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<li class="navelem"><a class="el" href="namespaceOpenMS.html">OpenMS</a></li><li class="navelem"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked</a></li> </ul>
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<div class="title">FeatureFinderAlgorithmPicked< PeakType, FeatureType > Member List</div> </div>
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<p>This is the complete list of members for <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a>, including all inherited members.</p>
<table class="directory">
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a5eeb26578a9f2313c4fff108fb2d9d7b">abort_</a>(const Seed &seed, const String &reason)</td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">protected</span></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a290ced0989c9db9d895a6a3435360f47">abort_reasons_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#afebc8acd9f3b44ba2936d842469f47e4">aborts_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
<tr><td class="entry"><a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#af01a99958d0b18999737158daf8820ac">ChargedIndexSet</a> typedef</td><td class="entry"><a class="el" href="structOpenMS_1_1FeatureFinderDefs.html">FeatureFinderDefs</a></td><td class="entry"></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a7c3b265b697a57615da5cd3274780efd">check_defaults_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#aef59aef1baf90c9ea2376d677c9bf79d">checkFeatureQuality_</a>(TraceFitter< PeakType > *fitter, MassTraces &feature_traces, const DoubleReal &seed_mz, const DoubleReal &min_feature_score, String &error_msg, DoubleReal &fit_score, DoubleReal &correlation, DoubleReal &final_score)</td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">protected</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#ad832d6128e519d1c6a7fefd89158c37e">chooseTraceFitter_</a>(double &tau)</td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">protected</span></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html#ae6ccfa631b2715c7d67fb491ebb6c422">CoordinateType</a> typedef</td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html">FeatureFinderAlgorithm< PeakType, FeatureType ></a></td><td class="entry"></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a81483ea6deb5aa7b6e11d0c3c871f532">create</a>()</td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">static</span></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a1f44db8f9a5426ed4be51833385f5d6a">cropFeature_</a>(TraceFitter< PeakType > *fitter, const MassTraces &traces, MassTraces &new_traces)</td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">protected</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#afa3f4fa08a8a3b675e2dab06e29412a1">debug_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#afb6802fda161cb0c1a4a05597f94aecc">DefaultParamHandler</a>(const String &name)</td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a954da7eef3cfddda446574eaadd20abb">DefaultParamHandler</a>(const DefaultParamHandler &rhs)</td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a761b1937850c141d0c6fff0e4d633a04">defaults_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a2802c591e6d7fd3fd9cc35f5e875d0ba">defaultsToParam_</a>()</td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a5a51f3f150b09068256195e934339a19">error_name_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#aa839121d4666e45d2b5b6d6eab010c5f">extendMassTrace_</a>(MassTrace &trace, SignedSize spectrum_index, DoubleReal mz, bool increase_rt, Size meta_index_overall, DoubleReal min_rt=0.0, DoubleReal max_rt=0.0) const </td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">protected</span></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a00f443c46b1d9f3485ef02d844b2433d">extendMassTraces_</a>(const IsotopePattern &pattern, MassTraces &traces, Size meta_index_overall) const </td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">protected</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html#ab3f8cbcd66e98d658af1c794192988a8">FeatureFinderAlgorithm</a>()</td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html">FeatureFinderAlgorithm< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#aea2bb0ee05df783538f89be9649dc3a6">FeatureFinderAlgorithmPicked</a>()</td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#add0d0618a5fcb50e31d55e698a8aa4ad">FeatureFinderAlgorithmPicked</a>(const FeatureFinderAlgorithmPicked &)</td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">private</span></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#abb9911ee4d024e85861f29bbbd0a63ef">FeatureMapType</a> typedef</td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html#a5f09052343ef99616ad653897841ce3e">features_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html">FeatureFinderAlgorithm< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html#adf68cb378c76b322b2cc4dbb2c145a3e">ff_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html">FeatureFinderAlgorithm< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#ad47e8e2093326bd3a2476713d538dd9e">findBestIsotopeFit_</a>(const Seed &center, UInt charge, IsotopePattern &best_pattern) const </td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">protected</span></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a48c8332d7771967946379f577ca3d973">findIsotope_</a>(DoubleReal pos, Size spectrum_index, IsotopePattern &pattern, Size pattern_index, Size &peak_index) const </td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">protected</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#a3f3de3e0d751949b8d0b60ffb302944a">Flag</a> enum name</td><td class="entry"><a class="el" href="structOpenMS_1_1FeatureFinderDefs.html">FeatureFinderDefs</a></td><td class="entry"></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a4097a067534171488208ac7b101b5c0c">FloatDataArrays</a> typedef</td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html#abe2fce5095efeecbcd815817430058e0">getDefaultParameters</a>() const </td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html">FeatureFinderAlgorithm< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a02f02fa9832ca3e8d47c575a39803a2a">getDefaults</a>() const </td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a9227a818c19cefa0d29f2940d87de2c6">getIsotopeDistribution_</a>(DoubleReal mass) const </td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">protected</span></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#aaee0f2845288173de9f6ad47e6ad31d5">getName</a>() const </td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a7f6aab5a7dfbdd1c062a4352a29361f3">getParameters</a>() const </td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#af73fd15708e50e77665070023a09cc87">getProductName</a>()</td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">static</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a768d4a2093627a2f34728656a9721bdf">getSubsections</a>() const </td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"></td></tr>
<tr><td class="entry"><a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#aaee0bfd850887fdc58115cead9e9b8b9">IndexPair</a> typedef</td><td class="entry"><a class="el" href="structOpenMS_1_1FeatureFinderDefs.html">FeatureFinderDefs</a></td><td class="entry"></td></tr>
<tr class="even"><td class="entry"><a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#af7439235b89a75354a2e87350e36834f">IndexSet</a> typedef</td><td class="entry"><a class="el" href="structOpenMS_1_1FeatureFinderDefs.html">FeatureFinderDefs</a></td><td class="entry"></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a1b9ec9e0082be83ffb6db38de5d6a59e">intensity_bins_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a5bce00011821a31f9344547c20c91e89">intensity_mz_step_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#aa2835fd8d8621a7ff9effbf85801917d">intensity_percentage_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#afea7a0615504af04bc1b922416f702f7">intensity_percentage_optional_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#ac3ad3885811bdd008ebad6dc58424303">intensity_rt_step_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a7678e0cd827e8669246943be392bd8d0">intensity_thresholds_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a5ae84d207afd136419c46d9ec811bb97">intensityScore_</a>(Size spectrum, Size peak) const </td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">protected</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a3430a3cac3d46d0420ab99024264359f">intensityScore_</a>(Size rt_bin, Size mz_bin, DoubleReal intensity) const </td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">protected</span></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html#ad697cf4c925820f74c876c10d0cb5570">IntensityType</a> typedef</td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html">FeatureFinderAlgorithm< PeakType, FeatureType ></a></td><td class="entry"></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#acc97fb931afc9e8f86fe9e40683a5a6c">intersection_</a>(const Feature &f1, const Feature &f2) const </td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">protected</span></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#afd3d2147a4dba98319002b876781f9ee">isotope_distributions_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a3e0a91daf1d288f768c9683e317488f4">IsotopePattern</a> typedef</td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a55abad1b592c5e19bfaddfc9f9c4a43e">isotopeScore_</a>(const TheoreticalIsotopePattern &isotopes, IsotopePattern &pattern, bool consider_mz_distances) const </td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">protected</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a1fd714af1f19177741eb0b4f6eb43e35">log_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">protected</span></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a0b28abb9db6a809eec07048c69fdfaab">map_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a2f89be2feec82f5414aedc09e488420b">MapType</a> typedef</td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#ac58a0fa7d6013c1855f905dbaa13c22f">mass_window_width_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#aa6c9b584cfcb710d0fce1c647086faaa">MassTrace</a> typedef</td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#af8a4ff323b3f9b72d77f56f9974d5aff">MassTraces</a> typedef</td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#ac7db097c6fa88dec6877edd3b7638b00">max_feature_intersection_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a4c3291ae9ef170e82168ccf10eaece4b">max_missing_trace_peaks_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a301b8bd9f8b8404ffd2bf375b1f0cf2b">max_rt_span_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a99b8e7ca327a789a40e0b03d4a280ca5">min_isotope_fit_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#abe26e024e3bac78f99e2a6d487cfe007">min_rt_span_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a5fcb56e069842a53246cb6f063e99f22">min_spectra_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#ae9d0a125b344c7315dd63aed9b6871fc">min_trace_score_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a5c38e77e9286e4faf58e56afce913ee2">nearest_</a>(DoubleReal pos, const SpectrumType &spec, Size start) const </td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">protected</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#ab76605572e7deccf4898a4398aa30d91">operator=</a>(const FeatureFinderAlgorithmPicked &)</td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">private</span></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ae6b6d68036a573a44f6609460ba2dfb6">OpenMS::DefaultParamHandler::operator=</a>(const DefaultParamHandler &rhs)</td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ac435f2dd4d9f9328db83af97129a8d7e">operator==</a>(const DefaultParamHandler &rhs) const </td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a26002e622e0cb7f544d7d364be7c274a">optional_fit_improvement_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a28c73e623c63a4fe3bfceb1ae8274f39">param_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#ae8eb5ec37d3582ac0963d06ea624ab48">pattern_tolerance_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a37daff803c85d8fa7e2ba173b3138d60">positionScore_</a>(DoubleReal pos1, DoubleReal pos2, DoubleReal allowed_deviation) const </td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">protected</span></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html#a0619c54ebc0b33a02eb71f942bb00111">registerChildren</a>()</td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html">FeatureFinderAlgorithm< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">static</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#ae464adecb765a4c2b9c35b374620454e">reported_mz_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a72fcb26a14f6beb1c3fbace9ab3e7dbb">run</a>()</td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#ac02da3d017367d854cb162983679aadc">Seed</a> typedef</td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a2f4fb91382abc4c1b9f767630d978f4d">seeds_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html#a7e594645b8460e600602bb64a8403537">setData</a>(const MapType &map, FeatureMapType &features, FeatureFinder &ff)</td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html">FeatureFinderAlgorithm< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a77d37f2e1c12e8bd33ea0e660a89e927">setName</a>(const String &name)</td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#abc8067511cfc949ae942ea2b08588f81">setParameters</a>(const Param &param)</td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a683154793bbb12ab5d16db81209606b0">setSeeds</a>(const FeatureMapType &seeds)</td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a6b1ec7d53602252d1f4d7cd0331fc917">slope_bound_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#ae4e0f0c176662a323a6a64d29ff986dd">SpectrumType</a> typedef</td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ac4b0e20bc59c7a5afe016c69067e428c">subsections_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#adb93f7d18f3a19b45d1a05e7c29dbeaa">TheoreticalIsotopePattern</a> typedef</td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a41848085aa61f5c00fc88e683945adf7">trace_tolerance_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
<tr><td class="entry"><a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#a3f3de3e0d751949b8d0b60ffb302944aaa09b651ef326a9d8efcee5cc5b720ab4">UNUSED</a> enum value</td><td class="entry"><a class="el" href="structOpenMS_1_1FeatureFinderDefs.html">FeatureFinderDefs</a></td><td class="entry"></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a776f7572fc4f466e9527ca233471920d">updateMembers_</a>()</td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">protected</span><span class="mlabel">virtual</span></td></tr>
<tr><td class="entry"><a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#a3f3de3e0d751949b8d0b60ffb302944aa1e780c62cb3fd2edcac39f739bbe6f6c">USED</a> enum value</td><td class="entry"><a class="el" href="structOpenMS_1_1FeatureFinderDefs.html">FeatureFinderDefs</a></td><td class="entry"></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#aba444910e4fccb93f91bf7ab135f508a">warn_empty_defaults_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#ad608d4f3d2a370fe2c1672c7818146b4">writeFeatureDebugInfo_</a>(TraceFitter< PeakType > *fitter, const MassTraces &traces, const MassTraces &new_traces, bool feature_ok, const String error_msg, const DoubleReal final_score, const Int plot_nr, const PeakType &peak, const String path="debug/features/")</td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">protected</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a11e9d6dd34fe8860874aa8abe0ec121b">~DefaultParamHandler</a>()</td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
<tr><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html#a636289874783c1efc7df5cb0359007d5">~FeatureFinderAlgorithm</a>()</td><td class="entry"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html">FeatureFinderAlgorithm< PeakType, FeatureType ></a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:34 using doxygen 1.8.5</font></TD>
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