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<HTML>
<HEAD>
<TITLE>FeatureFinderAlgorithmSimplest< PeakType, FeatureType > Class Template Reference</TITLE>
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<li class="navelem"><a class="el" href="namespaceOpenMS.html">OpenMS</a></li><li class="navelem"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimplest.html">FeatureFinderAlgorithmSimplest</a></li> </ul>
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<a href="#pub-methods">Public Member Functions</a> |
<a href="#pub-static-methods">Static Public Member Functions</a> |
<a href="#pri-methods">Private Member Functions</a> |
<a href="classOpenMS_1_1FeatureFinderAlgorithmSimplest-members.html">List of all members</a> </div>
<div class="headertitle">
<div class="title">FeatureFinderAlgorithmSimplest< PeakType, FeatureType > Class Template Reference<div class="ingroups"><a class="el" href="group__FeatureFinder.html">FeatureFinder</a></div></div> </div>
</div><!--header-->
<div class="contents">
<p><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html" title="Abstract base class for FeatureFinder algorithms. ">FeatureFinderAlgorithm</a> implementation using the Simple* modules.
<a href="classOpenMS_1_1FeatureFinderAlgorithmSimplest.html#details">More...</a></p>
<p><code>#include <<a class="el" href="FeatureFinderAlgorithmSimplest_8h_source.html">OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmSimplest.h</a>></code></p>
<div class="dynheader">
Inheritance diagram for FeatureFinderAlgorithmSimplest< PeakType, FeatureType >:</div>
<div class="dyncontent">
<div class="center">
<img src="classOpenMS_1_1FeatureFinderAlgorithmSimplest.png" usemap="#FeatureFinderAlgorithmSimplest< PeakType, FeatureType >_map" alt=""/>
<map id="FeatureFinderAlgorithmSimplest< PeakType, FeatureType >_map" name="FeatureFinderAlgorithmSimplest< PeakType, FeatureType >_map">
<area href="classOpenMS_1_1FeatureFinderAlgorithm.html" title="Abstract base class for FeatureFinder algorithms. " alt="FeatureFinderAlgorithm< PeakType, FeatureType >" shape="rect" coords="0,56,353,80"/>
<area href="structOpenMS_1_1FeatureFinderDefs.html" title="The purpose of this struct is to provide definitions of classes and typedefs which are used throughou..." alt="FeatureFinderDefs" shape="rect" coords="363,56,716,80"/>
<area href="classOpenMS_1_1DefaultParamHandler.html" title="A base class for all classes handling default parameters. " alt="DefaultParamHandler" shape="rect" coords="0,0,353,24"/>
</map>
</div></div>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:ac204820010faf324ef3f9b7c7f3056d5"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimplest.html#ac204820010faf324ef3f9b7c7f3056d5">FeatureFinderAlgorithmSimplest</a> ()</td></tr>
<tr class="memdesc:ac204820010faf324ef3f9b7c7f3056d5"><td class="mdescLeft"> </td><td class="mdescRight">default constructor <a href="#ac204820010faf324ef3f9b7c7f3056d5">More...</a><br/></td></tr>
<tr class="separator:ac204820010faf324ef3f9b7c7f3056d5"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:abe2fce5095efeecbcd815817430058e0"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="classOpenMS_1_1Param.html">Param</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimplest.html#abe2fce5095efeecbcd815817430058e0">getDefaultParameters</a> () const </td></tr>
<tr class="memdesc:abe2fce5095efeecbcd815817430058e0"><td class="mdescLeft"> </td><td class="mdescRight">Returns the default parameters. Reimplment. <a href="#abe2fce5095efeecbcd815817430058e0">More...</a><br/></td></tr>
<tr class="separator:abe2fce5095efeecbcd815817430058e0"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a72fcb26a14f6beb1c3fbace9ab3e7dbb"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimplest.html#a72fcb26a14f6beb1c3fbace9ab3e7dbb">run</a> ()</td></tr>
<tr class="memdesc:a72fcb26a14f6beb1c3fbace9ab3e7dbb"><td class="mdescLeft"> </td><td class="mdescRight">Main method that implements the actual algorithm. <a href="#a72fcb26a14f6beb1c3fbace9ab3e7dbb">More...</a><br/></td></tr>
<tr class="separator:a72fcb26a14f6beb1c3fbace9ab3e7dbb"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_methods_classOpenMS_1_1FeatureFinderAlgorithm"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classOpenMS_1_1FeatureFinderAlgorithm')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html">FeatureFinderAlgorithm< PeakType, FeatureType ></a></td></tr>
<tr class="memitem:ab3f8cbcd66e98d658af1c794192988a8 inherit pub_methods_classOpenMS_1_1FeatureFinderAlgorithm"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html#ab3f8cbcd66e98d658af1c794192988a8">FeatureFinderAlgorithm</a> ()</td></tr>
<tr class="memdesc:ab3f8cbcd66e98d658af1c794192988a8 inherit pub_methods_classOpenMS_1_1FeatureFinderAlgorithm"><td class="mdescLeft"> </td><td class="mdescRight">default constructor <a href="#ab3f8cbcd66e98d658af1c794192988a8">More...</a><br/></td></tr>
<tr class="separator:ab3f8cbcd66e98d658af1c794192988a8 inherit pub_methods_classOpenMS_1_1FeatureFinderAlgorithm"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a636289874783c1efc7df5cb0359007d5 inherit pub_methods_classOpenMS_1_1FeatureFinderAlgorithm"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html#a636289874783c1efc7df5cb0359007d5">~FeatureFinderAlgorithm</a> ()</td></tr>
<tr class="memdesc:a636289874783c1efc7df5cb0359007d5 inherit pub_methods_classOpenMS_1_1FeatureFinderAlgorithm"><td class="mdescLeft"> </td><td class="mdescRight">destructor <a href="#a636289874783c1efc7df5cb0359007d5">More...</a><br/></td></tr>
<tr class="separator:a636289874783c1efc7df5cb0359007d5 inherit pub_methods_classOpenMS_1_1FeatureFinderAlgorithm"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a7e594645b8460e600602bb64a8403537 inherit pub_methods_classOpenMS_1_1FeatureFinderAlgorithm"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html#a7e594645b8460e600602bb64a8403537">setData</a> (const <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html#adf6f376e844058d129ce8ba868276643">MapType</a> &map, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html#a21ea3968c35235b6b3cd78a2190280d9">FeatureMapType</a> &features, <a class="el" href="classOpenMS_1_1FeatureFinder.html">FeatureFinder</a> &ff)</td></tr>
<tr class="memdesc:a7e594645b8460e600602bb64a8403537 inherit pub_methods_classOpenMS_1_1FeatureFinderAlgorithm"><td class="mdescLeft"> </td><td class="mdescRight">Sets a reference to the calling <a class="el" href="classOpenMS_1_1FeatureFinder.html" title="The main feature finder class. ">FeatureFinder</a>. <a href="#a7e594645b8460e600602bb64a8403537">More...</a><br/></td></tr>
<tr class="separator:a7e594645b8460e600602bb64a8403537 inherit pub_methods_classOpenMS_1_1FeatureFinderAlgorithm"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a683154793bbb12ab5d16db81209606b0 inherit pub_methods_classOpenMS_1_1FeatureFinderAlgorithm"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html#a683154793bbb12ab5d16db81209606b0">setSeeds</a> (const <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html#a21ea3968c35235b6b3cd78a2190280d9">FeatureMapType</a> &seeds)</td></tr>
<tr class="memdesc:a683154793bbb12ab5d16db81209606b0 inherit pub_methods_classOpenMS_1_1FeatureFinderAlgorithm"><td class="mdescLeft"> </td><td class="mdescRight">Sets a reference to the calling <a class="el" href="classOpenMS_1_1FeatureFinder.html" title="The main feature finder class. ">FeatureFinder</a>. <a href="#a683154793bbb12ab5d16db81209606b0">More...</a><br/></td></tr>
<tr class="separator:a683154793bbb12ab5d16db81209606b0 inherit pub_methods_classOpenMS_1_1FeatureFinderAlgorithm"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_methods_classOpenMS_1_1DefaultParamHandler"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classOpenMS_1_1DefaultParamHandler')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td></tr>
<tr class="memitem:afb6802fda161cb0c1a4a05597f94aecc inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#afb6802fda161cb0c1a4a05597f94aecc">DefaultParamHandler</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &name)</td></tr>
<tr class="memdesc:afb6802fda161cb0c1a4a05597f94aecc inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Constructor with name that is displayed in error messages. <a href="#afb6802fda161cb0c1a4a05597f94aecc">More...</a><br/></td></tr>
<tr class="separator:afb6802fda161cb0c1a4a05597f94aecc inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a954da7eef3cfddda446574eaadd20abb inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a954da7eef3cfddda446574eaadd20abb">DefaultParamHandler</a> (const <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &rhs)</td></tr>
<tr class="memdesc:a954da7eef3cfddda446574eaadd20abb inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Copy constructor. <a href="#a954da7eef3cfddda446574eaadd20abb">More...</a><br/></td></tr>
<tr class="separator:a954da7eef3cfddda446574eaadd20abb inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a11e9d6dd34fe8860874aa8abe0ec121b inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a11e9d6dd34fe8860874aa8abe0ec121b">~DefaultParamHandler</a> ()</td></tr>
<tr class="memdesc:a11e9d6dd34fe8860874aa8abe0ec121b inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Destructor. <a href="#a11e9d6dd34fe8860874aa8abe0ec121b">More...</a><br/></td></tr>
<tr class="separator:a11e9d6dd34fe8860874aa8abe0ec121b inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae6b6d68036a573a44f6609460ba2dfb6 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ae6b6d68036a573a44f6609460ba2dfb6">operator=</a> (const <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &rhs)</td></tr>
<tr class="memdesc:ae6b6d68036a573a44f6609460ba2dfb6 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Assignment operator. <a href="#ae6b6d68036a573a44f6609460ba2dfb6">More...</a><br/></td></tr>
<tr class="separator:ae6b6d68036a573a44f6609460ba2dfb6 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ac435f2dd4d9f9328db83af97129a8d7e inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ac435f2dd4d9f9328db83af97129a8d7e">operator==</a> (const <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &rhs) const </td></tr>
<tr class="memdesc:ac435f2dd4d9f9328db83af97129a8d7e inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Equality operator. <a href="#ac435f2dd4d9f9328db83af97129a8d7e">More...</a><br/></td></tr>
<tr class="separator:ac435f2dd4d9f9328db83af97129a8d7e inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:abc8067511cfc949ae942ea2b08588f81 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#abc8067511cfc949ae942ea2b08588f81">setParameters</a> (const <a class="el" href="classOpenMS_1_1Param.html">Param</a> &param)</td></tr>
<tr class="memdesc:abc8067511cfc949ae942ea2b08588f81 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Sets the parameters. <a href="#abc8067511cfc949ae942ea2b08588f81">More...</a><br/></td></tr>
<tr class="separator:abc8067511cfc949ae942ea2b08588f81 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a7f6aab5a7dfbdd1c062a4352a29361f3 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1Param.html">Param</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a7f6aab5a7dfbdd1c062a4352a29361f3">getParameters</a> () const </td></tr>
<tr class="memdesc:a7f6aab5a7dfbdd1c062a4352a29361f3 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Non-mutable access to the parameters. <a href="#a7f6aab5a7dfbdd1c062a4352a29361f3">More...</a><br/></td></tr>
<tr class="separator:a7f6aab5a7dfbdd1c062a4352a29361f3 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a02f02fa9832ca3e8d47c575a39803a2a inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1Param.html">Param</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a02f02fa9832ca3e8d47c575a39803a2a">getDefaults</a> () const </td></tr>
<tr class="memdesc:a02f02fa9832ca3e8d47c575a39803a2a inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Non-mutable access to the default parameters. <a href="#a02f02fa9832ca3e8d47c575a39803a2a">More...</a><br/></td></tr>
<tr class="separator:a02f02fa9832ca3e8d47c575a39803a2a inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aaee0f2845288173de9f6ad47e6ad31d5 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1String.html">String</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#aaee0f2845288173de9f6ad47e6ad31d5">getName</a> () const </td></tr>
<tr class="memdesc:aaee0f2845288173de9f6ad47e6ad31d5 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Non-mutable access to the name. <a href="#aaee0f2845288173de9f6ad47e6ad31d5">More...</a><br/></td></tr>
<tr class="separator:aaee0f2845288173de9f6ad47e6ad31d5 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a77d37f2e1c12e8bd33ea0e660a89e927 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a77d37f2e1c12e8bd33ea0e660a89e927">setName</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &name)</td></tr>
<tr class="memdesc:a77d37f2e1c12e8bd33ea0e660a89e927 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Mutable access to the name. <a href="#a77d37f2e1c12e8bd33ea0e660a89e927">More...</a><br/></td></tr>
<tr class="separator:a77d37f2e1c12e8bd33ea0e660a89e927 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a768d4a2093627a2f34728656a9721bdf inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const std::vector< <a class="el" href="classOpenMS_1_1String.html">String</a> > & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a768d4a2093627a2f34728656a9721bdf">getSubsections</a> () const </td></tr>
<tr class="memdesc:a768d4a2093627a2f34728656a9721bdf inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Non-mutable access to the registered subsections. <a href="#a768d4a2093627a2f34728656a9721bdf">More...</a><br/></td></tr>
<tr class="separator:a768d4a2093627a2f34728656a9721bdf inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-static-methods"></a>
Static Public Member Functions</h2></td></tr>
<tr class="memitem:a81483ea6deb5aa7b6e11d0c3c871f532"><td class="memItemLeft" align="right" valign="top">static <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html">FeatureFinderAlgorithm</a><br class="typebreak"/>
< <a class="el" href="namespaceOpenMS.html#a013338b7bdbb5c3b4c78666656070e23">PeakType</a>, FeatureType > * </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimplest.html#a81483ea6deb5aa7b6e11d0c3c871f532">create</a> ()</td></tr>
<tr class="separator:a81483ea6deb5aa7b6e11d0c3c871f532"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:af73fd15708e50e77665070023a09cc87"><td class="memItemLeft" align="right" valign="top">static const <a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimplest.html#af73fd15708e50e77665070023a09cc87">getProductName</a> ()</td></tr>
<tr class="separator:af73fd15708e50e77665070023a09cc87"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_static_methods_classOpenMS_1_1FeatureFinderAlgorithm"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classOpenMS_1_1FeatureFinderAlgorithm')"><img src="closed.png" alt="-"/> Static Public Member Functions inherited from <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html">FeatureFinderAlgorithm< PeakType, FeatureType ></a></td></tr>
<tr class="memitem:a0619c54ebc0b33a02eb71f942bb00111 inherit pub_static_methods_classOpenMS_1_1FeatureFinderAlgorithm"><td class="memItemLeft" align="right" valign="top">static void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html#a0619c54ebc0b33a02eb71f942bb00111">registerChildren</a> ()</td></tr>
<tr class="memdesc:a0619c54ebc0b33a02eb71f942bb00111 inherit pub_static_methods_classOpenMS_1_1FeatureFinderAlgorithm"><td class="mdescLeft"> </td><td class="mdescRight">register all derived classes here (see <a class="el" href="FeatureFinderAlgorithm__impl_8h.html">FeatureFinderAlgorithm_impl.h</a>) <a href="#a0619c54ebc0b33a02eb71f942bb00111">More...</a><br/></td></tr>
<tr class="separator:a0619c54ebc0b33a02eb71f942bb00111 inherit pub_static_methods_classOpenMS_1_1FeatureFinderAlgorithm"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-methods"></a>
Private Member Functions</h2></td></tr>
<tr class="memitem:ac873ed4fb53a5c2e19f4430ce7e178ea"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimplest.html">FeatureFinderAlgorithmSimplest</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimplest.html#ac873ed4fb53a5c2e19f4430ce7e178ea">operator=</a> (const <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimplest.html">FeatureFinderAlgorithmSimplest</a> &)</td></tr>
<tr class="memdesc:ac873ed4fb53a5c2e19f4430ce7e178ea"><td class="mdescLeft"> </td><td class="mdescRight">Not implemented. <a href="#ac873ed4fb53a5c2e19f4430ce7e178ea">More...</a><br/></td></tr>
<tr class="separator:ac873ed4fb53a5c2e19f4430ce7e178ea"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a35a57e26382b36d54214b1e1f1e8ae67"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimplest.html#a35a57e26382b36d54214b1e1f1e8ae67">FeatureFinderAlgorithmSimplest</a> (const <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimplest.html">FeatureFinderAlgorithmSimplest</a> &)</td></tr>
<tr class="memdesc:a35a57e26382b36d54214b1e1f1e8ae67"><td class="mdescLeft"> </td><td class="mdescRight">Not implemented. <a href="#a35a57e26382b36d54214b1e1f1e8ae67">More...</a><br/></td></tr>
<tr class="separator:a35a57e26382b36d54214b1e1f1e8ae67"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="inherited"></a>
Additional Inherited Members</h2></td></tr>
<tr class="inherit_header pub_types_classOpenMS_1_1FeatureFinderAlgorithm"><td colspan="2" onclick="javascript:toggleInherit('pub_types_classOpenMS_1_1FeatureFinderAlgorithm')"><img src="closed.png" alt="-"/> Public Types inherited from <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html">FeatureFinderAlgorithm< PeakType, FeatureType ></a></td></tr>
<tr class="memitem:adf6f376e844058d129ce8ba868276643 inherit pub_types_classOpenMS_1_1FeatureFinderAlgorithm"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1MSExperiment.html">MSExperiment</a>< <a class="el" href="namespaceOpenMS.html#a013338b7bdbb5c3b4c78666656070e23">PeakType</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html#adf6f376e844058d129ce8ba868276643">MapType</a></td></tr>
<tr class="memdesc:adf6f376e844058d129ce8ba868276643 inherit pub_types_classOpenMS_1_1FeatureFinderAlgorithm"><td class="mdescLeft"> </td><td class="mdescRight">Input map type. <a href="#adf6f376e844058d129ce8ba868276643">More...</a><br/></td></tr>
<tr class="separator:adf6f376e844058d129ce8ba868276643 inherit pub_types_classOpenMS_1_1FeatureFinderAlgorithm"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae6ccfa631b2715c7d67fb491ebb6c422 inherit pub_types_classOpenMS_1_1FeatureFinderAlgorithm"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1MSExperiment.html#a181486a43da338e31f089df7661f50bb">MapType::CoordinateType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html#ae6ccfa631b2715c7d67fb491ebb6c422">CoordinateType</a></td></tr>
<tr class="memdesc:ae6ccfa631b2715c7d67fb491ebb6c422 inherit pub_types_classOpenMS_1_1FeatureFinderAlgorithm"><td class="mdescLeft"> </td><td class="mdescRight">Coordinate/Position type of peaks. <a href="#ae6ccfa631b2715c7d67fb491ebb6c422">More...</a><br/></td></tr>
<tr class="separator:ae6ccfa631b2715c7d67fb491ebb6c422 inherit pub_types_classOpenMS_1_1FeatureFinderAlgorithm"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ad697cf4c925820f74c876c10d0cb5570 inherit pub_types_classOpenMS_1_1FeatureFinderAlgorithm"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1MSExperiment.html#a221361082f641c3fccc58e9bc66aeee1">MapType::IntensityType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html#ad697cf4c925820f74c876c10d0cb5570">IntensityType</a></td></tr>
<tr class="memdesc:ad697cf4c925820f74c876c10d0cb5570 inherit pub_types_classOpenMS_1_1FeatureFinderAlgorithm"><td class="mdescLeft"> </td><td class="mdescRight">Intensity type of peaks. <a href="#ad697cf4c925820f74c876c10d0cb5570">More...</a><br/></td></tr>
<tr class="separator:ad697cf4c925820f74c876c10d0cb5570 inherit pub_types_classOpenMS_1_1FeatureFinderAlgorithm"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a21ea3968c35235b6b3cd78a2190280d9 inherit pub_types_classOpenMS_1_1FeatureFinderAlgorithm"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1FeatureMap.html">FeatureMap</a>< FeatureType > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html#a21ea3968c35235b6b3cd78a2190280d9">FeatureMapType</a></td></tr>
<tr class="memdesc:a21ea3968c35235b6b3cd78a2190280d9 inherit pub_types_classOpenMS_1_1FeatureFinderAlgorithm"><td class="mdescLeft"> </td><td class="mdescRight">Output feature type. <a href="#a21ea3968c35235b6b3cd78a2190280d9">More...</a><br/></td></tr>
<tr class="separator:a21ea3968c35235b6b3cd78a2190280d9 inherit pub_types_classOpenMS_1_1FeatureFinderAlgorithm"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_types_structOpenMS_1_1FeatureFinderDefs"><td colspan="2" onclick="javascript:toggleInherit('pub_types_structOpenMS_1_1FeatureFinderDefs')"><img src="closed.png" alt="-"/> Public Types inherited from <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html">FeatureFinderDefs</a></td></tr>
<tr class="memitem:a3f3de3e0d751949b8d0b60ffb302944a inherit pub_types_structOpenMS_1_1FeatureFinderDefs"><td class="memItemLeft" align="right" valign="top">enum  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#a3f3de3e0d751949b8d0b60ffb302944a">Flag</a> { <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#a3f3de3e0d751949b8d0b60ffb302944aaa09b651ef326a9d8efcee5cc5b720ab4">UNUSED</a>,
<a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#a3f3de3e0d751949b8d0b60ffb302944aa1e780c62cb3fd2edcac39f739bbe6f6c">USED</a>
}</td></tr>
<tr class="memdesc:a3f3de3e0d751949b8d0b60ffb302944a"><td class="mdescLeft"> </td><td class="mdescRight">Flags that indicate if a peak is already used in a feature. <a href="structOpenMS_1_1FeatureFinderDefs.html#a3f3de3e0d751949b8d0b60ffb302944a">More...</a><br/></td></tr>
<tr class="separator:a3f3de3e0d751949b8d0b60ffb302944a inherit pub_types_structOpenMS_1_1FeatureFinderDefs"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aaee0bfd850887fdc58115cead9e9b8b9 inherit pub_types_structOpenMS_1_1FeatureFinderDefs"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="structOpenMS_1_1IsotopeCluster.html#a0cab124671a3ada269f0553e1c8934da">IsotopeCluster::IndexPair</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#aaee0bfd850887fdc58115cead9e9b8b9">IndexPair</a></td></tr>
<tr class="memdesc:aaee0bfd850887fdc58115cead9e9b8b9 inherit pub_types_structOpenMS_1_1FeatureFinderDefs"><td class="mdescLeft"> </td><td class="mdescRight">Index to peak consisting of two UInts (scan index / peak index) <a href="#aaee0bfd850887fdc58115cead9e9b8b9">More...</a><br/></td></tr>
<tr class="separator:aaee0bfd850887fdc58115cead9e9b8b9 inherit pub_types_structOpenMS_1_1FeatureFinderDefs"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:af01a99958d0b18999737158daf8820ac inherit pub_types_structOpenMS_1_1FeatureFinderDefs"><td class="memItemLeft" align="right" valign="top">typedef <br class="typebreak"/>
<a class="el" href="structOpenMS_1_1IsotopeCluster_1_1ChargedIndexSet.html">IsotopeCluster::ChargedIndexSet</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#af01a99958d0b18999737158daf8820ac">ChargedIndexSet</a></td></tr>
<tr class="memdesc:af01a99958d0b18999737158daf8820ac inherit pub_types_structOpenMS_1_1FeatureFinderDefs"><td class="mdescLeft"> </td><td class="mdescRight">Index to peak consisting of two UInts (scan index / peak index) with charge information. <a href="#af01a99958d0b18999737158daf8820ac">More...</a><br/></td></tr>
<tr class="separator:af01a99958d0b18999737158daf8820ac inherit pub_types_structOpenMS_1_1FeatureFinderDefs"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:af7439235b89a75354a2e87350e36834f inherit pub_types_structOpenMS_1_1FeatureFinderDefs"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="structOpenMS_1_1IsotopeCluster.html#aed4049efd4228c847ab300ac4c466eca">IsotopeCluster::IndexSet</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#af7439235b89a75354a2e87350e36834f">IndexSet</a></td></tr>
<tr class="memdesc:af7439235b89a75354a2e87350e36834f inherit pub_types_structOpenMS_1_1FeatureFinderDefs"><td class="mdescLeft"> </td><td class="mdescRight">A set of peak indices. <a href="#af7439235b89a75354a2e87350e36834f">More...</a><br/></td></tr>
<tr class="separator:af7439235b89a75354a2e87350e36834f inherit pub_types_structOpenMS_1_1FeatureFinderDefs"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pro_methods_classOpenMS_1_1DefaultParamHandler"><td colspan="2" onclick="javascript:toggleInherit('pro_methods_classOpenMS_1_1DefaultParamHandler')"><img src="closed.png" alt="-"/> Protected Member Functions inherited from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td></tr>
<tr class="memitem:a776f7572fc4f466e9527ca233471920d inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a776f7572fc4f466e9527ca233471920d">updateMembers_</a> ()</td></tr>
<tr class="memdesc:a776f7572fc4f466e9527ca233471920d inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">This method is used to update extra member variables at the end of the <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#abc8067511cfc949ae942ea2b08588f81" title="Sets the parameters. ">setParameters()</a> method. <a href="#a776f7572fc4f466e9527ca233471920d">More...</a><br/></td></tr>
<tr class="separator:a776f7572fc4f466e9527ca233471920d inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a2802c591e6d7fd3fd9cc35f5e875d0ba inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a2802c591e6d7fd3fd9cc35f5e875d0ba">defaultsToParam_</a> ()</td></tr>
<tr class="memdesc:a2802c591e6d7fd3fd9cc35f5e875d0ba inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Updates the parameters after the defaults have been set in the constructor. <a href="#a2802c591e6d7fd3fd9cc35f5e875d0ba">More...</a><br/></td></tr>
<tr class="separator:a2802c591e6d7fd3fd9cc35f5e875d0ba inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pro_attribs_classOpenMS_1_1FeatureFinderAlgorithm"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classOpenMS_1_1FeatureFinderAlgorithm')"><img src="closed.png" alt="-"/> Protected Attributes inherited from <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html">FeatureFinderAlgorithm< PeakType, FeatureType ></a></td></tr>
<tr class="memitem:a365c5cf67d48519199fe00cb5688d628 inherit pro_attribs_classOpenMS_1_1FeatureFinderAlgorithm"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html#adf6f376e844058d129ce8ba868276643">MapType</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html#a365c5cf67d48519199fe00cb5688d628">map_</a></td></tr>
<tr class="memdesc:a365c5cf67d48519199fe00cb5688d628 inherit pro_attribs_classOpenMS_1_1FeatureFinderAlgorithm"><td class="mdescLeft"> </td><td class="mdescRight">Input data pointer. <a href="#a365c5cf67d48519199fe00cb5688d628">More...</a><br/></td></tr>
<tr class="separator:a365c5cf67d48519199fe00cb5688d628 inherit pro_attribs_classOpenMS_1_1FeatureFinderAlgorithm"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a5f09052343ef99616ad653897841ce3e inherit pro_attribs_classOpenMS_1_1FeatureFinderAlgorithm"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html#a21ea3968c35235b6b3cd78a2190280d9">FeatureMapType</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html#a5f09052343ef99616ad653897841ce3e">features_</a></td></tr>
<tr class="memdesc:a5f09052343ef99616ad653897841ce3e inherit pro_attribs_classOpenMS_1_1FeatureFinderAlgorithm"><td class="mdescLeft"> </td><td class="mdescRight">Output data pointer. <a href="#a5f09052343ef99616ad653897841ce3e">More...</a><br/></td></tr>
<tr class="separator:a5f09052343ef99616ad653897841ce3e inherit pro_attribs_classOpenMS_1_1FeatureFinderAlgorithm"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:adf68cb378c76b322b2cc4dbb2c145a3e inherit pro_attribs_classOpenMS_1_1FeatureFinderAlgorithm"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1FeatureFinder.html">FeatureFinder</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html#adf68cb378c76b322b2cc4dbb2c145a3e">ff_</a></td></tr>
<tr class="memdesc:adf68cb378c76b322b2cc4dbb2c145a3e inherit pro_attribs_classOpenMS_1_1FeatureFinderAlgorithm"><td class="mdescLeft"> </td><td class="mdescRight">Pointer to the calling <a class="el" href="classOpenMS_1_1FeatureFinder.html" title="The main feature finder class. ">FeatureFinder</a> that is used to access the feature flags. <a href="#adf68cb378c76b322b2cc4dbb2c145a3e">More...</a><br/></td></tr>
<tr class="separator:adf68cb378c76b322b2cc4dbb2c145a3e inherit pro_attribs_classOpenMS_1_1FeatureFinderAlgorithm"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pro_attribs_classOpenMS_1_1DefaultParamHandler"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classOpenMS_1_1DefaultParamHandler')"><img src="closed.png" alt="-"/> Protected Attributes inherited from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td></tr>
<tr class="memitem:a28c73e623c63a4fe3bfceb1ae8274f39 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Param.html">Param</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a28c73e623c63a4fe3bfceb1ae8274f39">param_</a></td></tr>
<tr class="memdesc:a28c73e623c63a4fe3bfceb1ae8274f39 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Container for current parameters. <a href="#a28c73e623c63a4fe3bfceb1ae8274f39">More...</a><br/></td></tr>
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<tr class="memdesc:a761b1937850c141d0c6fff0e4d633a04 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Container for default parameters. This member should be filled in the constructor of derived classes! <a href="#a761b1937850c141d0c6fff0e4d633a04">More...</a><br/></td></tr>
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<tr class="memitem:ac4b0e20bc59c7a5afe016c69067e428c inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">std::vector< <a class="el" href="classOpenMS_1_1String.html">String</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ac4b0e20bc59c7a5afe016c69067e428c">subsections_</a></td></tr>
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<tr class="memdesc:a5a51f3f150b09068256195e934339a19 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Name that is displayed in error messages during the parameter checking. <a href="#a5a51f3f150b09068256195e934339a19">More...</a><br/></td></tr>
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<tr class="memitem:a7c3b265b697a57615da5cd3274780efd inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a7c3b265b697a57615da5cd3274780efd">check_defaults_</a></td></tr>
<tr class="memdesc:a7c3b265b697a57615da5cd3274780efd inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">If this member is set to false no checking if parameters in done;. <a href="#a7c3b265b697a57615da5cd3274780efd">More...</a><br/></td></tr>
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<tr class="memitem:aba444910e4fccb93f91bf7ab135f508a inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#aba444910e4fccb93f91bf7ab135f508a">warn_empty_defaults_</a></td></tr>
<tr class="memdesc:aba444910e4fccb93f91bf7ab135f508a inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">If this member is set to false no warning is emitted when defaults are empty;. <a href="#aba444910e4fccb93f91bf7ab135f508a">More...</a><br/></td></tr>
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</table>
<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><h3>template<class PeakType, class FeatureType><br/>
class OpenMS::FeatureFinderAlgorithmSimplest< PeakType, FeatureType ></h3>
<p><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html" title="Abstract base class for FeatureFinder algorithms. ">FeatureFinderAlgorithm</a> implementation using the Simple* modules. </p>
<dl class="deprecated"><dt><b><a class="el" href="deprecated.html#_deprecated000004">Deprecated:</a></b></dt><dd>Deprecated in <a class="el" href="namespaceOpenMS.html" title="Main OpenMS namespace. ">OpenMS</a> 1.7.</dd></dl>
<p><a class="el" href="classOpenMS_1_1SimpleSeeder.html" title="Simple seeding class that uses the strongest peak as next seed. ">SimpleSeeder</a>, <a class="el" href="classOpenMS_1_1SimpleExtender.html" title="Simple feature extension algorithm. ">SimpleExtender</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html" title="Tests a group of data points in an LC-MS map for goodness-of-fit with a 2D averagine model...">ModelFitter</a> (using <a class="el" href="classOpenMS_1_1BiGaussModel.html" title="Bigaussian distribution approximated using linear interpolation. ">BiGaussModel</a> in RT dimension and <a class="el" href="classOpenMS_1_1IsotopeModel.html" title="Isotope distribution approximated using linear interpolation. ">IsotopeModel</a> (charge does not equal zero) or <a class="el" href="classOpenMS_1_1GaussModel.html" title="Normal distribution approximated using linear interpolation. ">GaussModel</a> in dimension of mz).</p>
<B>Parameters of this class are:</B><BR><BR>
<table border="1" style="border-style:solid; border-collapse:collapse; border-color:#c0c0c0;" width="100%" cellpadding="4">
<tr style="border-bottom:1px solid black; background:#fffff0"><th>Name</th><th>Type</th><th>Default</th><th>Restrictions</th><th>Description</th></tr>
<tr>
<td style="vertical-align:top"><b><span title="Settings for the seeder (Determines potential feature regions)">seeder</span>:min_intensity</b></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">0</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">Absolute value for the minimum intensity required for a seed.</td>
</tr>
<tr>
<td style="vertical-align:top"><b><span title="Settings for the seeder (Determines potential feature regions)">seeder</span>:signal_to_noise</b></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">10</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">Minimal required SignalToNoise (S/N) ratio for a seed.</td>
</tr>
<tr>
<td style="vertical-align:top"><i><span title="Settings for the seeder (Determines potential feature regions)">seeder</span>:SignalToNoiseEstimationParameter:max_intensity</i></td>
<td style="vertical-align:top">int</td><td style="vertical-align:top">-1</td>
<td style="vertical-align:top">min: -1</td><td style="vertical-align:top">maximal intensity considered for histogram construction. By default, it will be calculated automatically (see auto_mode). Only provide this parameter if you know what you are doing (and change 'auto_mode' to '-1')! All intensities EQUAL/ABOVE 'max_intensity' will be added to the LAST histogram bin. If you choose 'max_intensity' too small, the noise estimate might be too small as well. If chosen too big, the bins become quite large (which you could counter by increasing 'bin_count', which increases runtime). In general, the Median-S/N estimator is more robust to a manual max_intensity than the MeanIterative-S/N.</td>
</tr>
<tr>
<td style="vertical-align:top"><i><span title="Settings for the seeder (Determines potential feature regions)">seeder</span>:SignalToNoiseEstimationParameter:auto_max_stdev_factor</i></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">3</td>
<td style="vertical-align:top">min: 0 max: 999</td><td style="vertical-align:top">parameter for 'max_intensity' estimation (if 'auto_mode' == 0): mean + 'auto_max_stdev_factor' * stdev</td>
</tr>
<tr>
<td style="vertical-align:top"><i><span title="Settings for the seeder (Determines potential feature regions)">seeder</span>:SignalToNoiseEstimationParameter:auto_max_percentile</i></td>
<td style="vertical-align:top">int</td><td style="vertical-align:top">95</td>
<td style="vertical-align:top">min: 0 max: 100</td><td style="vertical-align:top">parameter for 'max_intensity' estimation (if 'auto_mode' == 1): auto_max_percentile th percentile</td>
</tr>
<tr>
<td style="vertical-align:top"><i><span title="Settings for the seeder (Determines potential feature regions)">seeder</span>:SignalToNoiseEstimationParameter:auto_mode</i></td>
<td style="vertical-align:top">int</td><td style="vertical-align:top">0</td>
<td style="vertical-align:top">min: -1 max: 1</td><td style="vertical-align:top">method to use to determine maximal intensity: -1 --> use 'max_intensity'; 0 --> 'auto_max_stdev_factor' method (default); 1 --> 'auto_max_percentile' method</td>
</tr>
<tr>
<td style="vertical-align:top"><b><span title="Settings for the seeder (Determines potential feature regions)">seeder</span>:SignalToNoiseEstimationParameter:win_len</b></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">200</td>
<td style="vertical-align:top">min: 1</td><td style="vertical-align:top">window length in Thomson</td>
</tr>
<tr>
<td style="vertical-align:top"><b><span title="Settings for the seeder (Determines potential feature regions)">seeder</span>:SignalToNoiseEstimationParameter:bin_count</b></td>
<td style="vertical-align:top">int</td><td style="vertical-align:top">30</td>
<td style="vertical-align:top">min: 3</td><td style="vertical-align:top">number of bins for intensity values</td>
</tr>
<tr>
<td style="vertical-align:top"><b><span title="Settings for the seeder (Determines potential feature regions)">seeder</span>:SignalToNoiseEstimationParameter:min_required_elements</b></td>
<td style="vertical-align:top">int</td><td style="vertical-align:top">10</td>
<td style="vertical-align:top">min: 1</td><td style="vertical-align:top">minimum number of elements required in a window (otherwise it is considered sparse)</td>
</tr>
<tr>
<td style="vertical-align:top"><i><span title="Settings for the seeder (Determines potential feature regions)">seeder</span>:SignalToNoiseEstimationParameter:noise_for_empty_window</i></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">1e+20</td>
<td style="vertical-align:top"> </td><td style="vertical-align:top">noise value used for sparse windows</td>
</tr>
<tr>
<td style="vertical-align:top"><b><span title="Settings for the extender (Collects all peaks belonging to a feature)">extender</span>:dist_mz_up</b></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">6</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">Maximum high m/z distance of peak in the region/boundary from the seed.</td>
</tr>
<tr>
<td style="vertical-align:top"><b><span title="Settings for the extender (Collects all peaks belonging to a feature)">extender</span>:dist_mz_down</b></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">2</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">Maximum low m/z distance of peak in the region/boundary from the seed.</td>
</tr>
<tr>
<td style="vertical-align:top"><b><span title="Settings for the extender (Collects all peaks belonging to a feature)">extender</span>:dist_rt_up</b></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">5</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">Maximum high RT distance of peak in the region/boundary from the seed.</td>
</tr>
<tr>
<td style="vertical-align:top"><b><span title="Settings for the extender (Collects all peaks belonging to a feature)">extender</span>:dist_rt_down</b></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">5</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">Maximum low RT distance of peak in the region/boundary from the seed.</td>
</tr>
<tr>
<td style="vertical-align:top"><i><span title="Settings for the extender (Collects all peaks belonging to a feature)">extender</span>:priority_thr</i></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">-0.1</td>
<td style="vertical-align:top"> </td><td style="vertical-align:top">Minimum priority for data points to be included into the boundary of the feature (default 0.0). The priority of a data point is a function of its intensity and its distance to the last point included into the feature region. Setting this threshold to zero or a very small value is usually a good idea.</td>
</tr>
<tr>
<td style="vertical-align:top"><b><span title="Settings for the extender (Collects all peaks belonging to a feature)">extender</span>:intensity_factor</b></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">0.03</td>
<td style="vertical-align:top">min: 0 max: 1</td><td style="vertical-align:top">Influences for intensity (ion count) threshold in the feature extension. We include only raw data points into this region if their intensity is larger than [intensity_factor * (intensity of the seed)].</td>
</tr>
<tr>
<td style="vertical-align:top"><i><span title="Settings for the modefitter (Fits a model to the data determinging the probapility that they represent a feature.)">fitter</span>:fit_algorithm</i></td>
<td style="vertical-align:top">string</td><td style="vertical-align:top">simple</td>
<td style="vertical-align:top">simple, simplest, wavelet</td><td style="vertical-align:top">Fitting algorithm type (internal parameter).</td>
</tr>
<tr>
<td style="vertical-align:top"><i><span title="Settings for the modefitter (Fits a model to the data determinging the probapility that they represent a feature.)">fitter</span>:max_iteration</i></td>
<td style="vertical-align:top">int</td><td style="vertical-align:top">500</td>
<td style="vertical-align:top">min: 1</td><td style="vertical-align:top">Maximum number of iterations for fitting with Levenberg-Marquardt algorithm.</td>
</tr>
<tr>
<td style="vertical-align:top"><i><span title="Settings for the modefitter (Fits a model to the data determinging the probapility that they represent a feature.)">fitter</span>:deltaAbsError</i></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">0.0001</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">Absolute error used by the Levenberg-Marquardt algorithm.</td>
</tr>
<tr>
<td style="vertical-align:top"><i><span title="Settings for the modefitter (Fits a model to the data determinging the probapility that they represent a feature.)">fitter</span>:deltaRelError</i></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">0.0001</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">Relative error used by the Levenberg-Marquardt algorithm.</td>
</tr>
<tr>
<td style="vertical-align:top"><i><span title="Settings for the modefitter (Fits a model to the data determinging the probapility that they represent a feature.)">fitter</span>:tolerance_stdev_bounding_box</i></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">3</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">Bounding box has range [minimim of data, maximum of data] enlarged by tolerance_stdev_bounding_box times the standard deviation of the data</td>
</tr>
<tr>
<td style="vertical-align:top"><b><span title="Settings for the modefitter (Fits a model to the data determinging the probapility that they represent a feature.)">fitter</span>:intensity_cutoff_factor</b></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">0.0500000007450581</td>
<td style="vertical-align:top">min: 0 max: 1</td><td style="vertical-align:top">Cutoff peaks with a predicted intensity below intensity_cutoff_factor times the maximal intensity of the model</td>
</tr>
<tr>
<td style="vertical-align:top"><i><span title="Settings for the modefitter (Fits a model to the data determinging the probapility that they represent a feature.)">fitter</span>:feature_intensity_sum</i></td>
<td style="vertical-align:top">int</td><td style="vertical-align:top">1</td>
<td style="vertical-align:top">min: 0 max: 1</td><td style="vertical-align:top">Determines what is reported as feature intensity.<BR>1: the sum of peak intensities;<BR>0: the maximum intensity of all peaks</td>
</tr>
<tr>
<td style="vertical-align:top"><b><span title="Settings for the modefitter (Fits a model to the data determinging the probapility that they represent a feature.)">fitter</span>:<span title="Required number of peaks for a feature.">min_num_peaks</span>:final</b></td>
<td style="vertical-align:top">int</td><td style="vertical-align:top">5</td>
<td style="vertical-align:top">min: 1</td><td style="vertical-align:top">Minimum number of peaks left after cutoff. If smaller, feature will be discarded.</td>
</tr>
<tr>
<td style="vertical-align:top"><b><span title="Settings for the modefitter (Fits a model to the data determinging the probapility that they represent a feature.)">fitter</span>:<span title="Required number of peaks for a feature.">min_num_peaks</span>:extended</b></td>
<td style="vertical-align:top">int</td><td style="vertical-align:top">10</td>
<td style="vertical-align:top">min: 1</td><td style="vertical-align:top">Minimum number of peaks after extension. If smaller, feature will be discarded.</td>
</tr>
<tr>
<td style="vertical-align:top"><b><span title="Settings for the modefitter (Fits a model to the data determinging the probapility that they represent a feature.)">fitter</span>:<span title="Model settings in RT dimension.">rt</span>:interpolation_step</b></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">0.200000002980232</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">Step size in seconds used to interpolate model for RT.</td>
</tr>
<tr>
<td style="vertical-align:top"><b><span title="Settings for the modefitter (Fits a model to the data determinging the probapility that they represent a feature.)">fitter</span>:<span title="Model settings in m/z dimension.">mz</span>:interpolation_step</b></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">0.0299999993294477</td>
<td style="vertical-align:top">min: 0.001</td><td style="vertical-align:top">Interpolation step size for m/z.</td>
</tr>
<tr>
<td style="vertical-align:top"><b><span title="Settings for the modefitter (Fits a model to the data determinging the probapility that they represent a feature.)">fitter</span>:<span title="Model settings in m/z dimension.">mz</span>:model_type:first</b></td>
<td style="vertical-align:top">int</td><td style="vertical-align:top">1</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">Numeric id of first m/z model fitted (usually indicating the charge state), 0 = no isotope pattern (fit a single gaussian).</td>
</tr>
<tr>
<td style="vertical-align:top"><b><span title="Settings for the modefitter (Fits a model to the data determinging the probapility that they represent a feature.)">fitter</span>:<span title="Model settings in m/z dimension.">mz</span>:model_type:last</b></td>
<td style="vertical-align:top">int</td><td style="vertical-align:top">4</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">Numeric id of last m/z model fitted (usually indicating the charge state), 0 = no isotope pattern (fit a single gaussian).</td>
</tr>
<tr>
<td style="vertical-align:top"><i><span title="Settings for the modefitter (Fits a model to the data determinging the probapility that they represent a feature.)">fitter</span>:<span title="Fitting quality settings.">quality</span>:type</i></td>
<td style="vertical-align:top">string</td><td style="vertical-align:top">Correlation</td>
<td style="vertical-align:top">Correlation, RankCorrelation</td><td style="vertical-align:top">Type of the quality measure used to assess the fit of model vs data.</td>
</tr>
<tr>
<td style="vertical-align:top"><b><span title="Settings for the modefitter (Fits a model to the data determinging the probapility that they represent a feature.)">fitter</span>:<span title="Fitting quality settings.">quality</span>:minimum</b></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">0.649999976158142</td>
<td style="vertical-align:top">min: 0 max: 1</td><td style="vertical-align:top">Minimum quality of fit, features below this threshold are discarded.</td>
</tr>
<tr>
<td style="vertical-align:top"><b><span title="Settings for the modefitter (Fits a model to the data determinging the probapility that they represent a feature.)">fitter</span>:<span title="Settings of the isotope model (m/z).">isotope_model</span>:<span title="Instrument resolution settings for m/z dimension.">stdev</span>:first</b></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">0.0399999991059303</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">First standard deviation to be considered for isotope model.</td>
</tr>
<tr>
<td style="vertical-align:top"><b><span title="Settings for the modefitter (Fits a model to the data determinging the probapility that they represent a feature.)">fitter</span>:<span title="Settings of the isotope model (m/z).">isotope_model</span>:<span title="Instrument resolution settings for m/z dimension.">stdev</span>:last</b></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">0.119999997317791</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">Last standard deviation to be considered for isotope model.</td>
</tr>
<tr>
<td style="vertical-align:top"><b><span title="Settings for the modefitter (Fits a model to the data determinging the probapility that they represent a feature.)">fitter</span>:<span title="Settings of the isotope model (m/z).">isotope_model</span>:<span title="Instrument resolution settings for m/z dimension.">stdev</span>:step</b></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">0.0399999991059303</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">Step size for standard deviations considered for isotope model.</td>
</tr>
<tr>
<td style="vertical-align:top"><i><span title="Settings for the modefitter (Fits a model to the data determinging the probapility that they represent a feature.)">fitter</span>:<span title="Settings of the isotope model (m/z).">isotope_model</span>:<span title="Averagines are used to approximate the number of atoms (C,H,N,O,S) which a peptide of a given mass contains.">averagines</span>:C</i></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">0.0444398894906044</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">Number of C atoms per Dalton of the mass.</td>
</tr>
<tr>
<td style="vertical-align:top"><i><span title="Settings for the modefitter (Fits a model to the data determinging the probapility that they represent a feature.)">fitter</span>:<span title="Settings of the isotope model (m/z).">isotope_model</span>:<span title="Averagines are used to approximate the number of atoms (C,H,N,O,S) which a peptide of a given mass contains.">averagines</span>:H</i></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">0.0698157176375389</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">Number of H atoms per Dalton of the mass.</td>
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<td style="vertical-align:top"><i><span title="Settings for the modefitter (Fits a model to the data determinging the probapility that they represent a feature.)">fitter</span>:<span title="Settings of the isotope model (m/z).">isotope_model</span>:<span title="Averagines are used to approximate the number of atoms (C,H,N,O,S) which a peptide of a given mass contains.">averagines</span>:N</i></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">0.0122177302837372</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">Number of N atoms per Dalton of the mass.</td>
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<td style="vertical-align:top"><i><span title="Settings for the modefitter (Fits a model to the data determinging the probapility that they represent a feature.)">fitter</span>:<span title="Settings of the isotope model (m/z).">isotope_model</span>:<span title="Averagines are used to approximate the number of atoms (C,H,N,O,S) which a peptide of a given mass contains.">averagines</span>:O</i></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">0.0132939899340272</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">Number of O atoms per Dalton of the mass.</td>
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<td style="vertical-align:top"><i><span title="Settings for the modefitter (Fits a model to the data determinging the probapility that they represent a feature.)">fitter</span>:<span title="Settings of the isotope model (m/z).">isotope_model</span>:<span title="Averagines are used to approximate the number of atoms (C,H,N,O,S) which a peptide of a given mass contains.">averagines</span>:S</i></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">0.000375250005163252</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">Number of S atoms per Dalton of the mass.</td>
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<td style="vertical-align:top"><i><span title="Settings for the modefitter (Fits a model to the data determinging the probapility that they represent a feature.)">fitter</span>:<span title="Settings of the isotope model (m/z).">isotope_model</span>:isotope:trim_right_cutoff</i></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">0.00100000004749745</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">Cutoff for averagine distribution, trailing isotopes below this relative intensity are not considered.</td>
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<td style="vertical-align:top"><i><span title="Settings for the modefitter (Fits a model to the data determinging the probapility that they represent a feature.)">fitter</span>:<span title="Settings of the isotope model (m/z).">isotope_model</span>:isotope:maximum</i></td>
<td style="vertical-align:top">int</td><td style="vertical-align:top">100</td>
<td style="vertical-align:top">min: 1</td><td style="vertical-align:top">Maximum number of isotopes being used for the IsotopeModel.</td>
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<td style="vertical-align:top"><i><span title="Settings for the modefitter (Fits a model to the data determinging the probapility that they represent a feature.)">fitter</span>:<span title="Settings of the isotope model (m/z).">isotope_model</span>:isotope:distance</i></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">1.00049495697021</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">Distance between consecutive isotopic peaks.</td>
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<LI> If a section name is documented, the documentation is displayed as tooltip.
<LI> Advanced parameter names are italic.
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</div><h2 class="groupheader">Constructor & Destructor Documentation</h2>
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<td class="memname"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimplest.html">FeatureFinderAlgorithmSimplest</a> </td>
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<p>default constructor </p>
<p>References <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a7c3b265b697a57615da5cd3274780efd">DefaultParamHandler::check_defaults_</a>, <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a761b1937850c141d0c6fff0e4d633a04">DefaultParamHandler::defaults_</a>, and <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimplest.html#abe2fce5095efeecbcd815817430058e0">FeatureFinderAlgorithmSimplest< PeakType, FeatureType >::getDefaultParameters()</a>.</p>
<p>Referenced by <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimplest.html#a81483ea6deb5aa7b6e11d0c3c871f532">FeatureFinderAlgorithmSimplest< PeakType, FeatureType >::create()</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimplest.html">FeatureFinderAlgorithmSimplest</a> </td>
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<td class="paramtype">const <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimplest.html">FeatureFinderAlgorithmSimplest</a>< <a class="el" href="namespaceOpenMS.html#a013338b7bdbb5c3b4c78666656070e23">PeakType</a>, FeatureType > & </td>
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<p>Not implemented. </p>
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<h2 class="groupheader">Member Function Documentation</h2>
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<td class="memname">static <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html">FeatureFinderAlgorithm</a><<a class="el" href="namespaceOpenMS.html#a013338b7bdbb5c3b4c78666656070e23">PeakType</a>, FeatureType>* create </td>
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<p>References <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimplest.html#ac204820010faf324ef3f9b7c7f3056d5">FeatureFinderAlgorithmSimplest< PeakType, FeatureType >::FeatureFinderAlgorithmSimplest()</a>.</p>
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<td class="memname">virtual <a class="el" href="classOpenMS_1_1Param.html">Param</a> getDefaultParameters </td>
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<p>Returns the default parameters. Reimplment. </p>
<p>Reimplment if you derive a class and have to incoopreate sub-algorithm default parameters. </p>
<p>Reimplemented from <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html#abe2fce5095efeecbcd815817430058e0">FeatureFinderAlgorithm< PeakType, FeatureType ></a>.</p>
<p>References <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html#a5f09052343ef99616ad653897841ce3e">FeatureFinderAlgorithm< PeakType, FeatureType >::features_</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html#adf68cb378c76b322b2cc4dbb2c145a3e">FeatureFinderAlgorithm< PeakType, FeatureType >::ff_</a>, <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a7f6aab5a7dfbdd1c062a4352a29361f3">DefaultParamHandler::getParameters()</a>, <a class="el" href="classOpenMS_1_1Param.html#ad2dc775a73f96e91dd97c61c39e4e7b8">Param::insert()</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html#a365c5cf67d48519199fe00cb5688d628">FeatureFinderAlgorithm< PeakType, FeatureType >::map_</a>, and <a class="el" href="classOpenMS_1_1Param.html#a7dae78ea20f5b33125f50c6ee27b1a60">Param::setSectionDescription()</a>.</p>
<p>Referenced by <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimplest.html#ac204820010faf324ef3f9b7c7f3056d5">FeatureFinderAlgorithmSimplest< PeakType, FeatureType >::FeatureFinderAlgorithmSimplest()</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimplest.html">FeatureFinderAlgorithmSimplest</a>& operator= </td>
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<td class="paramtype">const <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimplest.html">FeatureFinderAlgorithmSimplest</a>< <a class="el" href="namespaceOpenMS.html#a013338b7bdbb5c3b4c78666656070e23">PeakType</a>, FeatureType > & </td>
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<p>Not implemented. </p>
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<td class="memname">virtual void run </td>
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<p>Main method that implements the actual algorithm. </p>
<p><a class="el" href="structOpenMS_1_1Summary.html" title="Summary of fitting results. ">Summary</a> of fitting results </p>
<p>Implements <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html#a18954417d3124a8095783ea13dc6d00b">FeatureFinderAlgorithm< PeakType, FeatureType ></a>.</p>
<p>References <a class="el" href="structOpenMS_1_1Summary.html#a9b56db69bb4951352b93c88462ff1ebf">Summary::charge</a>, <a class="el" href="structOpenMS_1_1Summary.html#ada49faa76fd89acdb868bdc7a6dee4f3">Summary::corr_max</a>, <a class="el" href="structOpenMS_1_1Summary.html#a3358137d55fd95058116ee88f2663a88">Summary::corr_mean</a>, <a class="el" href="structOpenMS_1_1Summary.html#a71cb946fce0c9a14ad9c16ce9b12478d">Summary::corr_min</a>, <a class="el" href="classOpenMS_1_1DataValue.html#a078588ac6fbb817e4d04ea210c86d323">DataValue::EMPTY</a>, <a class="el" href="classOpenMS_1_1ProgressLogger.html#a1cc1012b0cdaea97f58d571af1ff45de">ProgressLogger::endProgress()</a>, <a class="el" href="structOpenMS_1_1Summary.html#a08ed2a5eb5d54783930d2b81ec1a54f3">Summary::exception</a>, <a class="el" href="classOpenMS_1_1Param.html#a1228c6f4950f49a2f819b48db40ee071">Param::exists()</a>, <a class="el" href="classOpenMS_1_1SimpleExtender.html#a1139a06b7cf1886d1977e5afcfddfea6">SimpleExtender< PeakType, FeatureType >::extend()</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html#a5f09052343ef99616ad653897841ce3e">FeatureFinderAlgorithm< PeakType, FeatureType >::features_</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html#adf68cb378c76b322b2cc4dbb2c145a3e">FeatureFinderAlgorithm< PeakType, FeatureType >::ff_</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a9a599157dfa0c832cf50f5596342c73e">ModelFitter< PeakType, FeatureType >::fit()</a>, <a class="el" href="classOpenMS_1_1BaseFeature.html#ac80a487ac41c375532f8bff16871ae15">BaseFeature::getCharge()</a>, <a class="el" href="classOpenMS_1_1Feature.html#a94eabbe00bbab2a589688631c807005e">Feature::getModelDescription()</a>, <a class="el" href="classOpenMS_1_1Exception_1_1BaseException.html#a2ad8ebd431528d7f92ce9a2fa14ccb34">BaseException::getName()</a>, <a class="el" href="classOpenMS_1_1Feature.html#a0adf747960bee685e34bfbbe57a7089b">Feature::getOverallQuality()</a>, <a class="el" href="classOpenMS_1_1ModelDescription.html#a8183b5d5ad2dcdeabbc0ef3e40b99ec7">ModelDescription< D >::getParam()</a>, <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a7f6aab5a7dfbdd1c062a4352a29361f3">DefaultParamHandler::getParameters()</a>, <a class="el" href="classOpenMS_1_1FeatureFinder.html#a91adbb58dfeb79d2b5d78c1047f406c9">FeatureFinder::getPeakFlag()</a>, <a class="el" href="classOpenMS_1_1Param.html#abd0f5571675ec99e1aa647b39e2a8711">Param::getValue()</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html#a365c5cf67d48519199fe00cb5688d628">FeatureFinderAlgorithm< PeakType, FeatureType >::map_</a>, <a class="el" href="structOpenMS_1_1Summary.html#ab0eab2f15ba67b518f5f559aed34f033">Summary::mz_model</a>, <a class="el" href="structOpenMS_1_1Summary.html#a0e61382ce2ca1e403a6cf0a540a205af">Summary::mz_stdev</a>, <a class="el" href="classOpenMS_1_1SimpleSeeder.html#a9101eb2633f34b26a1436b3d8e1e7522">SimpleSeeder< PeakType, FeatureType >::nextSeed()</a>, <a class="el" href="structOpenMS_1_1Summary.html#ac68ce663c906bb967bc90b60c355d009">Summary::no_exceptions</a>, <a class="el" href="classOpenMS_1_1Param.html#a33b2b89b6c31ab6fcf1e0babae08bd18">Param::setDefaults()</a>, <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#abc8067511cfc949ae942ea2b08588f81">DefaultParamHandler::setParameters()</a>, <a class="el" href="classOpenMS_1_1Param.html#a432099944e11263aa20aaf8ea1389790">Param::setValue()</a>, <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#a3f3de3e0d751949b8d0b60ffb302944aaa09b651ef326a9d8efcee5cc5b720ab4">FeatureFinderDefs::UNUSED</a>, and <a class="el" href="classOpenMS_1_1Exception_1_1BaseException.html#aff06f49065b54a8a86e02e9a2441a8ba">BaseException::what()</a>.</p>
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<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:34 using doxygen 1.8.5</font></TD>
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