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<HTML>
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<TITLE>FeatureGroupingAlgorithmLabeled Class Reference</TITLE>
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<li class="navelem"><a class="el" href="namespaceOpenMS.html">OpenMS</a></li><li class="navelem"><a class="el" href="classOpenMS_1_1FeatureGroupingAlgorithmLabeled.html">FeatureGroupingAlgorithmLabeled</a></li> </ul>
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<a href="#pub-methods">Public Member Functions</a> |
<a href="#pub-static-methods">Static Public Member Functions</a> |
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<a href="classOpenMS_1_1FeatureGroupingAlgorithmLabeled-members.html">List of all members</a> </div>
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<div class="title">FeatureGroupingAlgorithmLabeled Class Reference<div class="ingroups"><a class="el" href="group__FeatureGrouping.html">FeatureGrouping</a></div></div> </div>
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<p>A map feature grouping algorithm for labeling techniques with two labels.
<a href="classOpenMS_1_1FeatureGroupingAlgorithmLabeled.html#details">More...</a></p>
<p><code>#include <<a class="el" href="FeatureGroupingAlgorithmLabeled_8h_source.html">OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmLabeled.h</a>></code></p>
<div class="dynheader">
Inheritance diagram for FeatureGroupingAlgorithmLabeled:</div>
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<div class="center">
<img src="classOpenMS_1_1FeatureGroupingAlgorithmLabeled.png" usemap="#FeatureGroupingAlgorithmLabeled_map" alt=""/>
<map id="FeatureGroupingAlgorithmLabeled_map" name="FeatureGroupingAlgorithmLabeled_map">
<area href="classOpenMS_1_1FeatureGroupingAlgorithm.html" title="Base class for all feature grouping algorithms. " alt="FeatureGroupingAlgorithm" shape="rect" coords="0,56,206,80"/>
<area href="classOpenMS_1_1DefaultParamHandler.html" title="A base class for all classes handling default parameters. " alt="DefaultParamHandler" shape="rect" coords="0,0,206,24"/>
</map>
</div></div>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:a0d937b96ec7c2accc8dc4cdf84e89005"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureGroupingAlgorithmLabeled.html#a0d937b96ec7c2accc8dc4cdf84e89005">FeatureGroupingAlgorithmLabeled</a> ()</td></tr>
<tr class="memdesc:a0d937b96ec7c2accc8dc4cdf84e89005"><td class="mdescLeft"> </td><td class="mdescRight">Default constructor. <a href="#a0d937b96ec7c2accc8dc4cdf84e89005">More...</a><br/></td></tr>
<tr class="separator:a0d937b96ec7c2accc8dc4cdf84e89005"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a8b5c1a22c7d9edb5fd82bfb175e35036"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureGroupingAlgorithmLabeled.html#a8b5c1a22c7d9edb5fd82bfb175e35036">~FeatureGroupingAlgorithmLabeled</a> ()</td></tr>
<tr class="memdesc:a8b5c1a22c7d9edb5fd82bfb175e35036"><td class="mdescLeft"> </td><td class="mdescRight">Destructor. <a href="#a8b5c1a22c7d9edb5fd82bfb175e35036">More...</a><br/></td></tr>
<tr class="separator:a8b5c1a22c7d9edb5fd82bfb175e35036"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a0f991d0bd786437714b340faceec4e51"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureGroupingAlgorithmLabeled.html#a0f991d0bd786437714b340faceec4e51">group</a> (const std::vector< <a class="el" href="classOpenMS_1_1FeatureMap.html">FeatureMap</a><> > &maps, <a class="el" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> &out)</td></tr>
<tr class="memdesc:a0f991d0bd786437714b340faceec4e51"><td class="mdescLeft"> </td><td class="mdescRight">Applies the algorithm. <a href="#a0f991d0bd786437714b340faceec4e51">More...</a><br/></td></tr>
<tr class="separator:a0f991d0bd786437714b340faceec4e51"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_methods_classOpenMS_1_1FeatureGroupingAlgorithm"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classOpenMS_1_1FeatureGroupingAlgorithm')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classOpenMS_1_1FeatureGroupingAlgorithm.html">FeatureGroupingAlgorithm</a></td></tr>
<tr class="memitem:a749e82dde5f7c640b69e5156548bec43 inherit pub_methods_classOpenMS_1_1FeatureGroupingAlgorithm"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureGroupingAlgorithm.html#a749e82dde5f7c640b69e5156548bec43">FeatureGroupingAlgorithm</a> ()</td></tr>
<tr class="memdesc:a749e82dde5f7c640b69e5156548bec43 inherit pub_methods_classOpenMS_1_1FeatureGroupingAlgorithm"><td class="mdescLeft"> </td><td class="mdescRight">Default constructor. <a href="#a749e82dde5f7c640b69e5156548bec43">More...</a><br/></td></tr>
<tr class="separator:a749e82dde5f7c640b69e5156548bec43 inherit pub_methods_classOpenMS_1_1FeatureGroupingAlgorithm"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a0fc0adddbbea2087d2de4d36211a3438 inherit pub_methods_classOpenMS_1_1FeatureGroupingAlgorithm"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureGroupingAlgorithm.html#a0fc0adddbbea2087d2de4d36211a3438">~FeatureGroupingAlgorithm</a> ()</td></tr>
<tr class="memdesc:a0fc0adddbbea2087d2de4d36211a3438 inherit pub_methods_classOpenMS_1_1FeatureGroupingAlgorithm"><td class="mdescLeft"> </td><td class="mdescRight">Destructor. <a href="#a0fc0adddbbea2087d2de4d36211a3438">More...</a><br/></td></tr>
<tr class="separator:a0fc0adddbbea2087d2de4d36211a3438 inherit pub_methods_classOpenMS_1_1FeatureGroupingAlgorithm"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a7eb1d3414b1552de49e8e2ce8a279002 inherit pub_methods_classOpenMS_1_1FeatureGroupingAlgorithm"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureGroupingAlgorithm.html#a7eb1d3414b1552de49e8e2ce8a279002">group</a> (const std::vector< <a class="el" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> > &maps, <a class="el" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> &out)</td></tr>
<tr class="separator:a7eb1d3414b1552de49e8e2ce8a279002 inherit pub_methods_classOpenMS_1_1FeatureGroupingAlgorithm"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a7901d219c96fec5363ebb83057f5a015 inherit pub_methods_classOpenMS_1_1FeatureGroupingAlgorithm"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureGroupingAlgorithm.html#a7901d219c96fec5363ebb83057f5a015">transferSubelements</a> (const std::vector< <a class="el" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> > &maps, <a class="el" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> &out) const </td></tr>
<tr class="memdesc:a7901d219c96fec5363ebb83057f5a015 inherit pub_methods_classOpenMS_1_1FeatureGroupingAlgorithm"><td class="mdescLeft"> </td><td class="mdescRight">Transfers subelements (grouped features) from input consensus maps to the result consensus map. <a href="#a7901d219c96fec5363ebb83057f5a015">More...</a><br/></td></tr>
<tr class="separator:a7901d219c96fec5363ebb83057f5a015 inherit pub_methods_classOpenMS_1_1FeatureGroupingAlgorithm"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_methods_classOpenMS_1_1DefaultParamHandler"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classOpenMS_1_1DefaultParamHandler')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td></tr>
<tr class="memitem:afb6802fda161cb0c1a4a05597f94aecc inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#afb6802fda161cb0c1a4a05597f94aecc">DefaultParamHandler</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &name)</td></tr>
<tr class="memdesc:afb6802fda161cb0c1a4a05597f94aecc inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Constructor with name that is displayed in error messages. <a href="#afb6802fda161cb0c1a4a05597f94aecc">More...</a><br/></td></tr>
<tr class="separator:afb6802fda161cb0c1a4a05597f94aecc inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a954da7eef3cfddda446574eaadd20abb inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a954da7eef3cfddda446574eaadd20abb">DefaultParamHandler</a> (const <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &rhs)</td></tr>
<tr class="memdesc:a954da7eef3cfddda446574eaadd20abb inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Copy constructor. <a href="#a954da7eef3cfddda446574eaadd20abb">More...</a><br/></td></tr>
<tr class="separator:a954da7eef3cfddda446574eaadd20abb inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a11e9d6dd34fe8860874aa8abe0ec121b inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a11e9d6dd34fe8860874aa8abe0ec121b">~DefaultParamHandler</a> ()</td></tr>
<tr class="memdesc:a11e9d6dd34fe8860874aa8abe0ec121b inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Destructor. <a href="#a11e9d6dd34fe8860874aa8abe0ec121b">More...</a><br/></td></tr>
<tr class="separator:a11e9d6dd34fe8860874aa8abe0ec121b inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae6b6d68036a573a44f6609460ba2dfb6 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ae6b6d68036a573a44f6609460ba2dfb6">operator=</a> (const <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &rhs)</td></tr>
<tr class="memdesc:ae6b6d68036a573a44f6609460ba2dfb6 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Assignment operator. <a href="#ae6b6d68036a573a44f6609460ba2dfb6">More...</a><br/></td></tr>
<tr class="separator:ae6b6d68036a573a44f6609460ba2dfb6 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ac435f2dd4d9f9328db83af97129a8d7e inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ac435f2dd4d9f9328db83af97129a8d7e">operator==</a> (const <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &rhs) const </td></tr>
<tr class="memdesc:ac435f2dd4d9f9328db83af97129a8d7e inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Equality operator. <a href="#ac435f2dd4d9f9328db83af97129a8d7e">More...</a><br/></td></tr>
<tr class="separator:ac435f2dd4d9f9328db83af97129a8d7e inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:abc8067511cfc949ae942ea2b08588f81 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#abc8067511cfc949ae942ea2b08588f81">setParameters</a> (const <a class="el" href="classOpenMS_1_1Param.html">Param</a> &param)</td></tr>
<tr class="memdesc:abc8067511cfc949ae942ea2b08588f81 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Sets the parameters. <a href="#abc8067511cfc949ae942ea2b08588f81">More...</a><br/></td></tr>
<tr class="separator:abc8067511cfc949ae942ea2b08588f81 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a7f6aab5a7dfbdd1c062a4352a29361f3 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1Param.html">Param</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a7f6aab5a7dfbdd1c062a4352a29361f3">getParameters</a> () const </td></tr>
<tr class="memdesc:a7f6aab5a7dfbdd1c062a4352a29361f3 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Non-mutable access to the parameters. <a href="#a7f6aab5a7dfbdd1c062a4352a29361f3">More...</a><br/></td></tr>
<tr class="separator:a7f6aab5a7dfbdd1c062a4352a29361f3 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a02f02fa9832ca3e8d47c575a39803a2a inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1Param.html">Param</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a02f02fa9832ca3e8d47c575a39803a2a">getDefaults</a> () const </td></tr>
<tr class="memdesc:a02f02fa9832ca3e8d47c575a39803a2a inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Non-mutable access to the default parameters. <a href="#a02f02fa9832ca3e8d47c575a39803a2a">More...</a><br/></td></tr>
<tr class="separator:a02f02fa9832ca3e8d47c575a39803a2a inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aaee0f2845288173de9f6ad47e6ad31d5 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1String.html">String</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#aaee0f2845288173de9f6ad47e6ad31d5">getName</a> () const </td></tr>
<tr class="memdesc:aaee0f2845288173de9f6ad47e6ad31d5 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Non-mutable access to the name. <a href="#aaee0f2845288173de9f6ad47e6ad31d5">More...</a><br/></td></tr>
<tr class="separator:aaee0f2845288173de9f6ad47e6ad31d5 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a77d37f2e1c12e8bd33ea0e660a89e927 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a77d37f2e1c12e8bd33ea0e660a89e927">setName</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &name)</td></tr>
<tr class="memdesc:a77d37f2e1c12e8bd33ea0e660a89e927 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Mutable access to the name. <a href="#a77d37f2e1c12e8bd33ea0e660a89e927">More...</a><br/></td></tr>
<tr class="separator:a77d37f2e1c12e8bd33ea0e660a89e927 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a768d4a2093627a2f34728656a9721bdf inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const std::vector< <a class="el" href="classOpenMS_1_1String.html">String</a> > & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a768d4a2093627a2f34728656a9721bdf">getSubsections</a> () const </td></tr>
<tr class="memdesc:a768d4a2093627a2f34728656a9721bdf inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Non-mutable access to the registered subsections. <a href="#a768d4a2093627a2f34728656a9721bdf">More...</a><br/></td></tr>
<tr class="separator:a768d4a2093627a2f34728656a9721bdf inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-static-methods"></a>
Static Public Member Functions</h2></td></tr>
<tr class="memitem:ad2ac805e16aa3138b474571b71ed96fe"><td class="memItemLeft" align="right" valign="top">static <a class="el" href="classOpenMS_1_1FeatureGroupingAlgorithm.html">FeatureGroupingAlgorithm</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureGroupingAlgorithmLabeled.html#ad2ac805e16aa3138b474571b71ed96fe">create</a> ()</td></tr>
<tr class="memdesc:ad2ac805e16aa3138b474571b71ed96fe"><td class="mdescLeft"> </td><td class="mdescRight">Creates a new instance of this class (for <a class="el" href="classOpenMS_1_1Factory.html" title="Returns FactoryProduct* based on the name of the desired concrete FactoryProduct. ...">Factory</a>) <a href="#ad2ac805e16aa3138b474571b71ed96fe">More...</a><br/></td></tr>
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<tr class="memitem:a8d4600093afb26cff7d7db82a1837e9f"><td class="memItemLeft" align="right" valign="top">static <a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureGroupingAlgorithmLabeled.html#a8d4600093afb26cff7d7db82a1837e9f">getProductName</a> ()</td></tr>
<tr class="memdesc:a8d4600093afb26cff7d7db82a1837e9f"><td class="mdescLeft"> </td><td class="mdescRight">Returns the product name (for the <a class="el" href="classOpenMS_1_1Factory.html" title="Returns FactoryProduct* based on the name of the desired concrete FactoryProduct. ...">Factory</a>) <a href="#a8d4600093afb26cff7d7db82a1837e9f">More...</a><br/></td></tr>
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<tr class="inherit_header pub_static_methods_classOpenMS_1_1FeatureGroupingAlgorithm"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classOpenMS_1_1FeatureGroupingAlgorithm')"><img src="closed.png" alt="-"/> Static Public Member Functions inherited from <a class="el" href="classOpenMS_1_1FeatureGroupingAlgorithm.html">FeatureGroupingAlgorithm</a></td></tr>
<tr class="memitem:a7899dbe105534dc1f81971dd71a26ff0 inherit pub_static_methods_classOpenMS_1_1FeatureGroupingAlgorithm"><td class="memItemLeft" align="right" valign="top">static void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureGroupingAlgorithm.html#a7899dbe105534dc1f81971dd71a26ff0">registerChildren</a> ()</td></tr>
<tr class="memdesc:a7899dbe105534dc1f81971dd71a26ff0 inherit pub_static_methods_classOpenMS_1_1FeatureGroupingAlgorithm"><td class="mdescLeft"> </td><td class="mdescRight">Register all derived classes in this method. <a href="#a7899dbe105534dc1f81971dd71a26ff0">More...</a><br/></td></tr>
<tr class="separator:a7899dbe105534dc1f81971dd71a26ff0 inherit pub_static_methods_classOpenMS_1_1FeatureGroupingAlgorithm"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-methods"></a>
Private Member Functions</h2></td></tr>
<tr class="memitem:a54c9cf4607af47c75100e45d70b3ee64"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureGroupingAlgorithmLabeled.html#a54c9cf4607af47c75100e45d70b3ee64">FeatureGroupingAlgorithmLabeled</a> (const <a class="el" href="classOpenMS_1_1FeatureGroupingAlgorithmLabeled.html">FeatureGroupingAlgorithmLabeled</a> &)</td></tr>
<tr class="memdesc:a54c9cf4607af47c75100e45d70b3ee64"><td class="mdescLeft"> </td><td class="mdescRight">Copy constructor is not implemented -> private. <a href="#a54c9cf4607af47c75100e45d70b3ee64">More...</a><br/></td></tr>
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<tr class="memitem:aa5e8c8327e0f0990bc613ff1f31cf88e"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1FeatureGroupingAlgorithmLabeled.html">FeatureGroupingAlgorithmLabeled</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureGroupingAlgorithmLabeled.html#aa5e8c8327e0f0990bc613ff1f31cf88e">operator=</a> (const <a class="el" href="classOpenMS_1_1FeatureGroupingAlgorithmLabeled.html">FeatureGroupingAlgorithmLabeled</a> &)</td></tr>
<tr class="memdesc:aa5e8c8327e0f0990bc613ff1f31cf88e"><td class="mdescLeft"> </td><td class="mdescRight">Assignment operator is not implemented -> private. <a href="#aa5e8c8327e0f0990bc613ff1f31cf88e">More...</a><br/></td></tr>
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Additional Inherited Members</h2></td></tr>
<tr class="inherit_header pro_methods_classOpenMS_1_1DefaultParamHandler"><td colspan="2" onclick="javascript:toggleInherit('pro_methods_classOpenMS_1_1DefaultParamHandler')"><img src="closed.png" alt="-"/> Protected Member Functions inherited from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td></tr>
<tr class="memitem:a776f7572fc4f466e9527ca233471920d inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a776f7572fc4f466e9527ca233471920d">updateMembers_</a> ()</td></tr>
<tr class="memdesc:a776f7572fc4f466e9527ca233471920d inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">This method is used to update extra member variables at the end of the <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#abc8067511cfc949ae942ea2b08588f81" title="Sets the parameters. ">setParameters()</a> method. <a href="#a776f7572fc4f466e9527ca233471920d">More...</a><br/></td></tr>
<tr class="separator:a776f7572fc4f466e9527ca233471920d inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a2802c591e6d7fd3fd9cc35f5e875d0ba inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a2802c591e6d7fd3fd9cc35f5e875d0ba">defaultsToParam_</a> ()</td></tr>
<tr class="memdesc:a2802c591e6d7fd3fd9cc35f5e875d0ba inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Updates the parameters after the defaults have been set in the constructor. <a href="#a2802c591e6d7fd3fd9cc35f5e875d0ba">More...</a><br/></td></tr>
<tr class="separator:a2802c591e6d7fd3fd9cc35f5e875d0ba inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pro_attribs_classOpenMS_1_1DefaultParamHandler"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classOpenMS_1_1DefaultParamHandler')"><img src="closed.png" alt="-"/> Protected Attributes inherited from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td></tr>
<tr class="memitem:a28c73e623c63a4fe3bfceb1ae8274f39 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Param.html">Param</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a28c73e623c63a4fe3bfceb1ae8274f39">param_</a></td></tr>
<tr class="memdesc:a28c73e623c63a4fe3bfceb1ae8274f39 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Container for current parameters. <a href="#a28c73e623c63a4fe3bfceb1ae8274f39">More...</a><br/></td></tr>
<tr class="separator:a28c73e623c63a4fe3bfceb1ae8274f39 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a761b1937850c141d0c6fff0e4d633a04 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Param.html">Param</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a761b1937850c141d0c6fff0e4d633a04">defaults_</a></td></tr>
<tr class="memdesc:a761b1937850c141d0c6fff0e4d633a04 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Container for default parameters. This member should be filled in the constructor of derived classes! <a href="#a761b1937850c141d0c6fff0e4d633a04">More...</a><br/></td></tr>
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<tr class="memitem:ac4b0e20bc59c7a5afe016c69067e428c inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">std::vector< <a class="el" href="classOpenMS_1_1String.html">String</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ac4b0e20bc59c7a5afe016c69067e428c">subsections_</a></td></tr>
<tr class="memdesc:ac4b0e20bc59c7a5afe016c69067e428c inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Container for registered subsections. This member should be filled in the constructor of derived classes! <a href="#ac4b0e20bc59c7a5afe016c69067e428c">More...</a><br/></td></tr>
<tr class="separator:ac4b0e20bc59c7a5afe016c69067e428c inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a5a51f3f150b09068256195e934339a19 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a5a51f3f150b09068256195e934339a19">error_name_</a></td></tr>
<tr class="memdesc:a5a51f3f150b09068256195e934339a19 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Name that is displayed in error messages during the parameter checking. <a href="#a5a51f3f150b09068256195e934339a19">More...</a><br/></td></tr>
<tr class="separator:a5a51f3f150b09068256195e934339a19 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a7c3b265b697a57615da5cd3274780efd inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a7c3b265b697a57615da5cd3274780efd">check_defaults_</a></td></tr>
<tr class="memdesc:a7c3b265b697a57615da5cd3274780efd inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">If this member is set to false no checking if parameters in done;. <a href="#a7c3b265b697a57615da5cd3274780efd">More...</a><br/></td></tr>
<tr class="separator:a7c3b265b697a57615da5cd3274780efd inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aba444910e4fccb93f91bf7ab135f508a inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#aba444910e4fccb93f91bf7ab135f508a">warn_empty_defaults_</a></td></tr>
<tr class="memdesc:aba444910e4fccb93f91bf7ab135f508a inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">If this member is set to false no warning is emitted when defaults are empty;. <a href="#aba444910e4fccb93f91bf7ab135f508a">More...</a><br/></td></tr>
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>A map feature grouping algorithm for labeling techniques with two labels. </p>
<p>It takes one maps and searches for corresponding features with a defined distance in RT and m/z.</p>
<B>Parameters of this class are:</B><BR><BR>
<table border="1" style="border-style:solid; border-collapse:collapse; border-color:#c0c0c0;" width="100%" cellpadding="4">
<tr style="border-bottom:1px solid black; background:#fffff0"><th>Name</th><th>Type</th><th>Default</th><th>Restrictions</th><th>Description</th></tr>
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<td style="vertical-align:top"><b>rt_estimate</b></td>
<td style="vertical-align:top">string</td><td style="vertical-align:top">true</td>
<td style="vertical-align:top">true, false</td><td style="vertical-align:top">If 'true' the optimal RT pair distance and deviation are estimated by fitting a gaussian distribution to the histogram of pair distance. Note that this works only datasets with a significant amount of pairs! If 'false' the parameters 'rt_pair_dist', 'rt_dev_low' and 'rt_dev_high' define the optimal distance.</td>
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<td style="vertical-align:top"><b>rt_pair_dist</b></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">-20</td>
<td style="vertical-align:top"> </td><td style="vertical-align:top">optimal pair distance in RT [sec] from light to heavy feature</td>
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<td style="vertical-align:top"><b>rt_dev_low</b></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">15</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">maximum allowed deviation below optimal retention time distance</td>
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<td style="vertical-align:top"><b>rt_dev_high</b></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">15</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">maximum allowed deviation above optimal retention time distance</td>
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<td style="vertical-align:top"><b>mz_pair_dists</b></td>
<td style="vertical-align:top">float list</td><td style="vertical-align:top">[4]</td>
<td style="vertical-align:top"> </td><td style="vertical-align:top">optimal pair distances in m/z [Th] for features with charge +1 (adapted to +2, +3, .. by division through charge)</td>
</tr>
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<td style="vertical-align:top"><b>mz_dev</b></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">0.05</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">maximum allowed deviation from optimal m/z distance<BR></td>
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<td style="vertical-align:top"><i>mrm</i></td>
<td style="vertical-align:top">string</td><td style="vertical-align:top">false</td>
<td style="vertical-align:top">true, false</td><td style="vertical-align:top">this option should be used if the features correspond mrm chromatograms (additionally the precursor is taken into account)</td>
</tr>
</table>
<br>
<b>Note:</b>
<UL style="margin-top:0px;">
<LI> If a section name is documented, the documentation is displayed as tooltip.
<LI> Advanced parameter names are italic.
</UL>
</div><h2 class="groupheader">Constructor & Destructor Documentation</h2>
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<td class="memname"><a class="el" href="classOpenMS_1_1FeatureGroupingAlgorithmLabeled.html">FeatureGroupingAlgorithmLabeled</a> </td>
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<p>Default constructor. </p>
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<td class="memname">virtual ~<a class="el" href="classOpenMS_1_1FeatureGroupingAlgorithmLabeled.html">FeatureGroupingAlgorithmLabeled</a> </td>
<td>(</td>
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<p>Destructor. </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1FeatureGroupingAlgorithmLabeled.html">FeatureGroupingAlgorithmLabeled</a> </td>
<td>(</td>
<td class="paramtype">const <a class="el" href="classOpenMS_1_1FeatureGroupingAlgorithmLabeled.html">FeatureGroupingAlgorithmLabeled</a> & </td>
<td class="paramname"></td><td>)</td>
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<p>Copy constructor is not implemented -> private. </p>
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<h2 class="groupheader">Member Function Documentation</h2>
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<td class="memname">static <a class="el" href="classOpenMS_1_1FeatureGroupingAlgorithm.html">FeatureGroupingAlgorithm</a>* create </td>
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<p>Creates a new instance of this class (for <a class="el" href="classOpenMS_1_1Factory.html" title="Returns FactoryProduct* based on the name of the desired concrete FactoryProduct. ...">Factory</a>) </p>
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<td class="memname">static <a class="el" href="classOpenMS_1_1String.html">String</a> getProductName </td>
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<p>Returns the product name (for the <a class="el" href="classOpenMS_1_1Factory.html" title="Returns FactoryProduct* based on the name of the desired concrete FactoryProduct. ...">Factory</a>) </p>
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<td class="memname">virtual void group </td>
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<td class="paramtype">const std::vector< <a class="el" href="classOpenMS_1_1FeatureMap.html">FeatureMap</a><> > & </td>
<td class="paramname"><em>maps</em>, </td>
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<td class="paramkey"></td>
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<td class="paramtype"><a class="el" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> & </td>
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<p>Applies the algorithm. </p>
<dl class="section note"><dt>Note</dt><dd>Exactly one <em>input</em> map has to be provided. </dd>
<dd>
The <em>output</em> map has to have two file descriptions, containing the same file name. The file descriptions have to be labeled 'heavy' and 'light'.</dd></dl>
<dl class="exception"><dt>Exceptions</dt><dd>
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<tr><td class="paramname"><a class="el" href="classOpenMS_1_1Exception_1_1IllegalArgument.html" title="A method or algorithm argument contains illegal values. ">Exception::IllegalArgument</a></td><td>is thrown if the input data is not valid. </td></tr>
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<p>Implements <a class="el" href="classOpenMS_1_1FeatureGroupingAlgorithm.html#aaaa08088795bd28c314bf41199c30c08">FeatureGroupingAlgorithm</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1FeatureGroupingAlgorithmLabeled.html">FeatureGroupingAlgorithmLabeled</a>& operator= </td>
<td>(</td>
<td class="paramtype">const <a class="el" href="classOpenMS_1_1FeatureGroupingAlgorithmLabeled.html">FeatureGroupingAlgorithmLabeled</a> & </td>
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<p>Assignment operator is not implemented -> private. </p>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:26 using doxygen 1.8.5</font></TD>
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