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<HTML>
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<TITLE>ItraqFourPlexQuantitationMethod Class Reference</TITLE>
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<li class="navelem"><a class="el" href="namespaceOpenMS.html">OpenMS</a></li><li class="navelem"><a class="el" href="classOpenMS_1_1ItraqFourPlexQuantitationMethod.html">ItraqFourPlexQuantitationMethod</a></li> </ul>
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<a href="#pub-methods">Public Member Functions</a> |
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<div class="title">ItraqFourPlexQuantitationMethod Class Reference</div> </div>
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<p>iTRAQ 4 plex quantitation to be used with the IsobaricQuantitation.
<a href="classOpenMS_1_1ItraqFourPlexQuantitationMethod.html#details">More...</a></p>
<p><code>#include <<a class="el" href="ItraqFourPlexQuantitationMethod_8h_source.html">OpenMS/ANALYSIS/QUANTITATION/ItraqFourPlexQuantitationMethod.h</a>></code></p>
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Inheritance diagram for ItraqFourPlexQuantitationMethod:</div>
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<img src="classOpenMS_1_1ItraqFourPlexQuantitationMethod.png" usemap="#ItraqFourPlexQuantitationMethod_map" alt=""/>
<map id="ItraqFourPlexQuantitationMethod_map" name="ItraqFourPlexQuantitationMethod_map">
<area href="classOpenMS_1_1IsobaricQuantitationMethod.html" title="Abstract base class describing an isobaric quantitation method in terms of the used channels and an i..." alt="IsobaricQuantitationMethod" shape="rect" coords="0,56,196,80"/>
<area href="classOpenMS_1_1DefaultParamHandler.html" title="A base class for all classes handling default parameters. " alt="DefaultParamHandler" shape="rect" coords="0,0,196,24"/>
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<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:ac1e4e1b4a65ed5476e3c1c4581bd7bb1"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ItraqFourPlexQuantitationMethod.html#ac1e4e1b4a65ed5476e3c1c4581bd7bb1">ItraqFourPlexQuantitationMethod</a> ()</td></tr>
<tr class="memdesc:ac1e4e1b4a65ed5476e3c1c4581bd7bb1"><td class="mdescLeft"> </td><td class="mdescRight">Default c'tor. <a href="#ac1e4e1b4a65ed5476e3c1c4581bd7bb1">More...</a><br/></td></tr>
<tr class="separator:ac1e4e1b4a65ed5476e3c1c4581bd7bb1"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a55a3f4419abf90f23925f88e8a2ef957"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ItraqFourPlexQuantitationMethod.html#a55a3f4419abf90f23925f88e8a2ef957">~ItraqFourPlexQuantitationMethod</a> ()</td></tr>
<tr class="memdesc:a55a3f4419abf90f23925f88e8a2ef957"><td class="mdescLeft"> </td><td class="mdescRight">d'tor <a href="#a55a3f4419abf90f23925f88e8a2ef957">More...</a><br/></td></tr>
<tr class="separator:a55a3f4419abf90f23925f88e8a2ef957"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a840a41a44c2846588d9f5c1c9f00aaa3"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ItraqFourPlexQuantitationMethod.html#a840a41a44c2846588d9f5c1c9f00aaa3">ItraqFourPlexQuantitationMethod</a> (const <a class="el" href="classOpenMS_1_1ItraqFourPlexQuantitationMethod.html">ItraqFourPlexQuantitationMethod</a> &other)</td></tr>
<tr class="memdesc:a840a41a44c2846588d9f5c1c9f00aaa3"><td class="mdescLeft"> </td><td class="mdescRight">Copy c'tor. <a href="#a840a41a44c2846588d9f5c1c9f00aaa3">More...</a><br/></td></tr>
<tr class="separator:a840a41a44c2846588d9f5c1c9f00aaa3"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a26d2bc99f297c5f5954230dcfc993afc"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1ItraqFourPlexQuantitationMethod.html">ItraqFourPlexQuantitationMethod</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ItraqFourPlexQuantitationMethod.html#a26d2bc99f297c5f5954230dcfc993afc">operator=</a> (const <a class="el" href="classOpenMS_1_1ItraqFourPlexQuantitationMethod.html">ItraqFourPlexQuantitationMethod</a> &rhs)</td></tr>
<tr class="memdesc:a26d2bc99f297c5f5954230dcfc993afc"><td class="mdescLeft"> </td><td class="mdescRight">Assignment operator. <a href="#a26d2bc99f297c5f5954230dcfc993afc">More...</a><br/></td></tr>
<tr class="separator:a26d2bc99f297c5f5954230dcfc993afc"><td class="memSeparator" colspan="2"> </td></tr>
<tr><td colspan="2"><div class="groupHeader"></div></td></tr>
<tr class="memitem:aaee0f2845288173de9f6ad47e6ad31d5"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1String.html">String</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ItraqFourPlexQuantitationMethod.html#aaee0f2845288173de9f6ad47e6ad31d5">getName</a> () const </td></tr>
<tr class="memdesc:aaee0f2845288173de9f6ad47e6ad31d5"><td class="mdescLeft"> </td><td class="mdescRight">Methods to implement from <a class="el" href="classOpenMS_1_1IsobaricQuantitationMethod.html" title="Abstract base class describing an isobaric quantitation method in terms of the used channels and an i...">IsobaricQuantitationMethod</a>. <a href="#aaee0f2845288173de9f6ad47e6ad31d5">More...</a><br/></td></tr>
<tr class="separator:aaee0f2845288173de9f6ad47e6ad31d5"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a46a71312f95f8e11bd74f11da1396fb8"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1IsobaricQuantitationMethod.html#aa7bb02779188678f665adfdcb4386bab">IsobaricChannelList</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ItraqFourPlexQuantitationMethod.html#a46a71312f95f8e11bd74f11da1396fb8">getChannelInformation</a> () const </td></tr>
<tr class="memdesc:a46a71312f95f8e11bd74f11da1396fb8"><td class="mdescLeft"> </td><td class="mdescRight">Returns information on the different channels used by the qunatitation method. <a href="#a46a71312f95f8e11bd74f11da1396fb8">More...</a><br/></td></tr>
<tr class="separator:a46a71312f95f8e11bd74f11da1396fb8"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:afeac82c909439329c803a1987bf3e9ba"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ItraqFourPlexQuantitationMethod.html#afeac82c909439329c803a1987bf3e9ba">getNumberOfChannels</a> () const </td></tr>
<tr class="memdesc:afeac82c909439329c803a1987bf3e9ba"><td class="mdescLeft"> </td><td class="mdescRight">Gives the number of channels available for this quantitation method. <a href="#afeac82c909439329c803a1987bf3e9ba">More...</a><br/></td></tr>
<tr class="separator:afeac82c909439329c803a1987bf3e9ba"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a187979d7971b2ea264793f6eb65917db"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="classOpenMS_1_1Matrix.html">Matrix</a>< <a class="el" href="classdouble.html">double</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ItraqFourPlexQuantitationMethod.html#a187979d7971b2ea264793f6eb65917db">getIsotopeCorrectionMatrix</a> () const </td></tr>
<tr class="memdesc:a187979d7971b2ea264793f6eb65917db"><td class="mdescLeft"> </td><td class="mdescRight">Returns an isotope correction matrix suitable for the given quantitation method. <a href="#a187979d7971b2ea264793f6eb65917db">More...</a><br/></td></tr>
<tr class="separator:a187979d7971b2ea264793f6eb65917db"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a016bcec7c633bcd0007e927ac3d0fa4e"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ItraqFourPlexQuantitationMethod.html#a016bcec7c633bcd0007e927ac3d0fa4e">getReferenceChannel</a> () const </td></tr>
<tr class="memdesc:a016bcec7c633bcd0007e927ac3d0fa4e"><td class="mdescLeft"> </td><td class="mdescRight">Returns the index of the reference channel in the IsobaricChannelList (see <a class="el" href="classOpenMS_1_1IsobaricQuantitationMethod.html#a4be01f758e4f0d040ca6219bb2e50203" title="Returns information on the different channels used by the qunatitation method. ">IsobaricQuantitationMethod::getChannelInformation()</a>). <a href="#a016bcec7c633bcd0007e927ac3d0fa4e">More...</a><br/></td></tr>
<tr class="separator:a016bcec7c633bcd0007e927ac3d0fa4e"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_methods_classOpenMS_1_1IsobaricQuantitationMethod"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classOpenMS_1_1IsobaricQuantitationMethod')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classOpenMS_1_1IsobaricQuantitationMethod.html">IsobaricQuantitationMethod</a></td></tr>
<tr class="memitem:a4df4e92b5177def1dfdc0a65eac40b80 inherit pub_methods_classOpenMS_1_1IsobaricQuantitationMethod"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IsobaricQuantitationMethod.html#a4df4e92b5177def1dfdc0a65eac40b80">IsobaricQuantitationMethod</a> ()</td></tr>
<tr class="memdesc:a4df4e92b5177def1dfdc0a65eac40b80 inherit pub_methods_classOpenMS_1_1IsobaricQuantitationMethod"><td class="mdescLeft"> </td><td class="mdescRight">c'tor setting the name for the underlying param handler <a href="#a4df4e92b5177def1dfdc0a65eac40b80">More...</a><br/></td></tr>
<tr class="separator:a4df4e92b5177def1dfdc0a65eac40b80 inherit pub_methods_classOpenMS_1_1IsobaricQuantitationMethod"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:abc81075b5cd50554104aa041d9f8af0a inherit pub_methods_classOpenMS_1_1IsobaricQuantitationMethod"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IsobaricQuantitationMethod.html#abc81075b5cd50554104aa041d9f8af0a">~IsobaricQuantitationMethod</a> ()</td></tr>
<tr class="memdesc:abc81075b5cd50554104aa041d9f8af0a inherit pub_methods_classOpenMS_1_1IsobaricQuantitationMethod"><td class="mdescLeft"> </td><td class="mdescRight">d'tor <a href="#abc81075b5cd50554104aa041d9f8af0a">More...</a><br/></td></tr>
<tr class="separator:abc81075b5cd50554104aa041d9f8af0a inherit pub_methods_classOpenMS_1_1IsobaricQuantitationMethod"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_methods_classOpenMS_1_1DefaultParamHandler"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classOpenMS_1_1DefaultParamHandler')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td></tr>
<tr class="memitem:afb6802fda161cb0c1a4a05597f94aecc inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#afb6802fda161cb0c1a4a05597f94aecc">DefaultParamHandler</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &name)</td></tr>
<tr class="memdesc:afb6802fda161cb0c1a4a05597f94aecc inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Constructor with name that is displayed in error messages. <a href="#afb6802fda161cb0c1a4a05597f94aecc">More...</a><br/></td></tr>
<tr class="separator:afb6802fda161cb0c1a4a05597f94aecc inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a954da7eef3cfddda446574eaadd20abb inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a954da7eef3cfddda446574eaadd20abb">DefaultParamHandler</a> (const <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &rhs)</td></tr>
<tr class="memdesc:a954da7eef3cfddda446574eaadd20abb inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Copy constructor. <a href="#a954da7eef3cfddda446574eaadd20abb">More...</a><br/></td></tr>
<tr class="separator:a954da7eef3cfddda446574eaadd20abb inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a11e9d6dd34fe8860874aa8abe0ec121b inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a11e9d6dd34fe8860874aa8abe0ec121b">~DefaultParamHandler</a> ()</td></tr>
<tr class="memdesc:a11e9d6dd34fe8860874aa8abe0ec121b inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Destructor. <a href="#a11e9d6dd34fe8860874aa8abe0ec121b">More...</a><br/></td></tr>
<tr class="separator:a11e9d6dd34fe8860874aa8abe0ec121b inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae6b6d68036a573a44f6609460ba2dfb6 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ae6b6d68036a573a44f6609460ba2dfb6">operator=</a> (const <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &rhs)</td></tr>
<tr class="memdesc:ae6b6d68036a573a44f6609460ba2dfb6 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Assignment operator. <a href="#ae6b6d68036a573a44f6609460ba2dfb6">More...</a><br/></td></tr>
<tr class="separator:ae6b6d68036a573a44f6609460ba2dfb6 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ac435f2dd4d9f9328db83af97129a8d7e inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ac435f2dd4d9f9328db83af97129a8d7e">operator==</a> (const <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &rhs) const </td></tr>
<tr class="memdesc:ac435f2dd4d9f9328db83af97129a8d7e inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Equality operator. <a href="#ac435f2dd4d9f9328db83af97129a8d7e">More...</a><br/></td></tr>
<tr class="separator:ac435f2dd4d9f9328db83af97129a8d7e inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:abc8067511cfc949ae942ea2b08588f81 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#abc8067511cfc949ae942ea2b08588f81">setParameters</a> (const <a class="el" href="classOpenMS_1_1Param.html">Param</a> &param)</td></tr>
<tr class="memdesc:abc8067511cfc949ae942ea2b08588f81 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Sets the parameters. <a href="#abc8067511cfc949ae942ea2b08588f81">More...</a><br/></td></tr>
<tr class="separator:abc8067511cfc949ae942ea2b08588f81 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a7f6aab5a7dfbdd1c062a4352a29361f3 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1Param.html">Param</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a7f6aab5a7dfbdd1c062a4352a29361f3">getParameters</a> () const </td></tr>
<tr class="memdesc:a7f6aab5a7dfbdd1c062a4352a29361f3 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Non-mutable access to the parameters. <a href="#a7f6aab5a7dfbdd1c062a4352a29361f3">More...</a><br/></td></tr>
<tr class="separator:a7f6aab5a7dfbdd1c062a4352a29361f3 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a02f02fa9832ca3e8d47c575a39803a2a inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1Param.html">Param</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a02f02fa9832ca3e8d47c575a39803a2a">getDefaults</a> () const </td></tr>
<tr class="memdesc:a02f02fa9832ca3e8d47c575a39803a2a inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Non-mutable access to the default parameters. <a href="#a02f02fa9832ca3e8d47c575a39803a2a">More...</a><br/></td></tr>
<tr class="separator:a02f02fa9832ca3e8d47c575a39803a2a inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aaee0f2845288173de9f6ad47e6ad31d5 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1String.html">String</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#aaee0f2845288173de9f6ad47e6ad31d5">getName</a> () const </td></tr>
<tr class="memdesc:aaee0f2845288173de9f6ad47e6ad31d5 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Non-mutable access to the name. <a href="#aaee0f2845288173de9f6ad47e6ad31d5">More...</a><br/></td></tr>
<tr class="separator:aaee0f2845288173de9f6ad47e6ad31d5 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a77d37f2e1c12e8bd33ea0e660a89e927 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a77d37f2e1c12e8bd33ea0e660a89e927">setName</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &name)</td></tr>
<tr class="memdesc:a77d37f2e1c12e8bd33ea0e660a89e927 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Mutable access to the name. <a href="#a77d37f2e1c12e8bd33ea0e660a89e927">More...</a><br/></td></tr>
<tr class="separator:a77d37f2e1c12e8bd33ea0e660a89e927 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a768d4a2093627a2f34728656a9721bdf inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const std::vector< <a class="el" href="classOpenMS_1_1String.html">String</a> > & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a768d4a2093627a2f34728656a9721bdf">getSubsections</a> () const </td></tr>
<tr class="memdesc:a768d4a2093627a2f34728656a9721bdf inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Non-mutable access to the registered subsections. <a href="#a768d4a2093627a2f34728656a9721bdf">More...</a><br/></td></tr>
<tr class="separator:a768d4a2093627a2f34728656a9721bdf inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pro-methods"></a>
Protected Member Functions</h2></td></tr>
<tr class="memitem:a592956c92badca126cec3abd62da8d67"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ItraqFourPlexQuantitationMethod.html#a592956c92badca126cec3abd62da8d67">setDefaultParams_</a> ()</td></tr>
<tr class="memdesc:a592956c92badca126cec3abd62da8d67"><td class="mdescLeft"> </td><td class="mdescRight">implemented for <a class="el" href="classOpenMS_1_1DefaultParamHandler.html" title="A base class for all classes handling default parameters. ">DefaultParamHandler</a> <a href="#a592956c92badca126cec3abd62da8d67">More...</a><br/></td></tr>
<tr class="separator:a592956c92badca126cec3abd62da8d67"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aaf258e1a9846d9b238ee4b3005ad3ee9"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ItraqFourPlexQuantitationMethod.html#aaf258e1a9846d9b238ee4b3005ad3ee9">updateMembers_</a> ()</td></tr>
<tr class="memdesc:aaf258e1a9846d9b238ee4b3005ad3ee9"><td class="mdescLeft"> </td><td class="mdescRight">implemented for <a class="el" href="classOpenMS_1_1DefaultParamHandler.html" title="A base class for all classes handling default parameters. ">DefaultParamHandler</a> <a href="#aaf258e1a9846d9b238ee4b3005ad3ee9">More...</a><br/></td></tr>
<tr class="separator:aaf258e1a9846d9b238ee4b3005ad3ee9"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pro_methods_classOpenMS_1_1IsobaricQuantitationMethod"><td colspan="2" onclick="javascript:toggleInherit('pro_methods_classOpenMS_1_1IsobaricQuantitationMethod')"><img src="closed.png" alt="-"/> Protected Member Functions inherited from <a class="el" href="classOpenMS_1_1IsobaricQuantitationMethod.html">IsobaricQuantitationMethod</a></td></tr>
<tr class="memitem:ad7f1c9c450ddd4b4872561038f21020c inherit pro_methods_classOpenMS_1_1IsobaricQuantitationMethod"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Matrix.html">Matrix</a>< <a class="el" href="classdouble.html">double</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IsobaricQuantitationMethod.html#ad7f1c9c450ddd4b4872561038f21020c">stringListToIsotopCorrectionMatrix_</a> (const <a class="el" href="classOpenMS_1_1StringList.html">StringList</a> &stringlist) const </td></tr>
<tr class="memdesc:ad7f1c9c450ddd4b4872561038f21020c inherit pro_methods_classOpenMS_1_1IsobaricQuantitationMethod"><td class="mdescLeft"> </td><td class="mdescRight">Helper function to convert a string list containing an isotope correction matrix into a <a class="el" href="classOpenMS_1_1Matrix.html">Matrix<double></a>. <a href="#ad7f1c9c450ddd4b4872561038f21020c">More...</a><br/></td></tr>
<tr class="separator:ad7f1c9c450ddd4b4872561038f21020c inherit pro_methods_classOpenMS_1_1IsobaricQuantitationMethod"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pro_methods_classOpenMS_1_1DefaultParamHandler"><td colspan="2" onclick="javascript:toggleInherit('pro_methods_classOpenMS_1_1DefaultParamHandler')"><img src="closed.png" alt="-"/> Protected Member Functions inherited from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td></tr>
<tr class="memitem:a2802c591e6d7fd3fd9cc35f5e875d0ba inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a2802c591e6d7fd3fd9cc35f5e875d0ba">defaultsToParam_</a> ()</td></tr>
<tr class="memdesc:a2802c591e6d7fd3fd9cc35f5e875d0ba inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Updates the parameters after the defaults have been set in the constructor. <a href="#a2802c591e6d7fd3fd9cc35f5e875d0ba">More...</a><br/></td></tr>
<tr class="separator:a2802c591e6d7fd3fd9cc35f5e875d0ba inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-attribs"></a>
Private Attributes</h2></td></tr>
<tr class="memitem:afb6fe75f5595a031a4f3a8c362e86954"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1IsobaricQuantitationMethod.html#aa7bb02779188678f665adfdcb4386bab">IsobaricChannelList</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ItraqFourPlexQuantitationMethod.html#afb6fe75f5595a031a4f3a8c362e86954">channels_</a></td></tr>
<tr class="memdesc:afb6fe75f5595a031a4f3a8c362e86954"><td class="mdescLeft"> </td><td class="mdescRight">the actuacl information on the different itraq4plex channels. <a href="#afb6fe75f5595a031a4f3a8c362e86954">More...</a><br/></td></tr>
<tr class="separator:afb6fe75f5595a031a4f3a8c362e86954"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a2f83ab7ec20f11592f41f7baa27f0e0c"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ItraqFourPlexQuantitationMethod.html#a2f83ab7ec20f11592f41f7baa27f0e0c">reference_channel_</a></td></tr>
<tr class="memdesc:a2f83ab7ec20f11592f41f7baa27f0e0c"><td class="mdescLeft"> </td><td class="mdescRight">The reference channel for this experiment. <a href="#a2f83ab7ec20f11592f41f7baa27f0e0c">More...</a><br/></td></tr>
<tr class="separator:a2f83ab7ec20f11592f41f7baa27f0e0c"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-static-attribs"></a>
Static Private Attributes</h2></td></tr>
<tr class="memitem:ad6a84cb49b70ff615b5a7c11c20377ca"><td class="memItemLeft" align="right" valign="top">static const <a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ItraqFourPlexQuantitationMethod.html#ad6a84cb49b70ff615b5a7c11c20377ca">name_</a></td></tr>
<tr class="memdesc:ad6a84cb49b70ff615b5a7c11c20377ca"><td class="mdescLeft"> </td><td class="mdescRight">The name of the quantitation method. <a href="#ad6a84cb49b70ff615b5a7c11c20377ca">More...</a><br/></td></tr>
<tr class="separator:ad6a84cb49b70ff615b5a7c11c20377ca"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="inherited"></a>
Additional Inherited Members</h2></td></tr>
<tr class="inherit_header pub_types_classOpenMS_1_1IsobaricQuantitationMethod"><td colspan="2" onclick="javascript:toggleInherit('pub_types_classOpenMS_1_1IsobaricQuantitationMethod')"><img src="closed.png" alt="-"/> Public Types inherited from <a class="el" href="classOpenMS_1_1IsobaricQuantitationMethod.html">IsobaricQuantitationMethod</a></td></tr>
<tr class="memitem:aa7bb02779188678f665adfdcb4386bab inherit pub_types_classOpenMS_1_1IsobaricQuantitationMethod"><td class="memItemLeft" align="right" valign="top">typedef std::vector<br class="typebreak"/>
< <a class="el" href="structOpenMS_1_1IsobaricQuantitationMethod_1_1IsobaricChannelInformation.html">IsobaricChannelInformation</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IsobaricQuantitationMethod.html#aa7bb02779188678f665adfdcb4386bab">IsobaricChannelList</a></td></tr>
<tr class="separator:aa7bb02779188678f665adfdcb4386bab inherit pub_types_classOpenMS_1_1IsobaricQuantitationMethod"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pro_attribs_classOpenMS_1_1DefaultParamHandler"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classOpenMS_1_1DefaultParamHandler')"><img src="closed.png" alt="-"/> Protected Attributes inherited from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td></tr>
<tr class="memitem:a28c73e623c63a4fe3bfceb1ae8274f39 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Param.html">Param</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a28c73e623c63a4fe3bfceb1ae8274f39">param_</a></td></tr>
<tr class="memdesc:a28c73e623c63a4fe3bfceb1ae8274f39 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Container for current parameters. <a href="#a28c73e623c63a4fe3bfceb1ae8274f39">More...</a><br/></td></tr>
<tr class="separator:a28c73e623c63a4fe3bfceb1ae8274f39 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a761b1937850c141d0c6fff0e4d633a04 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Param.html">Param</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a761b1937850c141d0c6fff0e4d633a04">defaults_</a></td></tr>
<tr class="memdesc:a761b1937850c141d0c6fff0e4d633a04 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Container for default parameters. This member should be filled in the constructor of derived classes! <a href="#a761b1937850c141d0c6fff0e4d633a04">More...</a><br/></td></tr>
<tr class="separator:a761b1937850c141d0c6fff0e4d633a04 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ac4b0e20bc59c7a5afe016c69067e428c inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">std::vector< <a class="el" href="classOpenMS_1_1String.html">String</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ac4b0e20bc59c7a5afe016c69067e428c">subsections_</a></td></tr>
<tr class="memdesc:ac4b0e20bc59c7a5afe016c69067e428c inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Container for registered subsections. This member should be filled in the constructor of derived classes! <a href="#ac4b0e20bc59c7a5afe016c69067e428c">More...</a><br/></td></tr>
<tr class="separator:ac4b0e20bc59c7a5afe016c69067e428c inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a5a51f3f150b09068256195e934339a19 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a5a51f3f150b09068256195e934339a19">error_name_</a></td></tr>
<tr class="memdesc:a5a51f3f150b09068256195e934339a19 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Name that is displayed in error messages during the parameter checking. <a href="#a5a51f3f150b09068256195e934339a19">More...</a><br/></td></tr>
<tr class="separator:a5a51f3f150b09068256195e934339a19 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a7c3b265b697a57615da5cd3274780efd inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a7c3b265b697a57615da5cd3274780efd">check_defaults_</a></td></tr>
<tr class="memdesc:a7c3b265b697a57615da5cd3274780efd inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">If this member is set to false no checking if parameters in done;. <a href="#a7c3b265b697a57615da5cd3274780efd">More...</a><br/></td></tr>
<tr class="separator:a7c3b265b697a57615da5cd3274780efd inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aba444910e4fccb93f91bf7ab135f508a inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#aba444910e4fccb93f91bf7ab135f508a">warn_empty_defaults_</a></td></tr>
<tr class="memdesc:aba444910e4fccb93f91bf7ab135f508a inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">If this member is set to false no warning is emitted when defaults are empty;. <a href="#aba444910e4fccb93f91bf7ab135f508a">More...</a><br/></td></tr>
<tr class="separator:aba444910e4fccb93f91bf7ab135f508a inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
</table>
<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>iTRAQ 4 plex quantitation to be used with the IsobaricQuantitation. </p>
<B>Parameters of this class are:</B><BR><BR>
<table border="1" style="border-style:solid; border-collapse:collapse; border-color:#c0c0c0;" width="100%" cellpadding="4">
<tr style="border-bottom:1px solid black; background:#fffff0"><th>Name</th><th>Type</th><th>Default</th><th>Restrictions</th><th>Description</th></tr>
<tr>
<td style="vertical-align:top"><b>channel_114_description</b></td>
<td style="vertical-align:top">string</td><td style="vertical-align:top"></td>
<td style="vertical-align:top"> </td><td style="vertical-align:top">Description for the content of the 114 channel.</td>
</tr>
<tr>
<td style="vertical-align:top"><b>channel_115_description</b></td>
<td style="vertical-align:top">string</td><td style="vertical-align:top"></td>
<td style="vertical-align:top"> </td><td style="vertical-align:top">Description for the content of the 115 channel.</td>
</tr>
<tr>
<td style="vertical-align:top"><b>channel_116_description</b></td>
<td style="vertical-align:top">string</td><td style="vertical-align:top"></td>
<td style="vertical-align:top"> </td><td style="vertical-align:top">Description for the content of the 116 channel.</td>
</tr>
<tr>
<td style="vertical-align:top"><b>channel_117_description</b></td>
<td style="vertical-align:top">string</td><td style="vertical-align:top"></td>
<td style="vertical-align:top"> </td><td style="vertical-align:top">Description for the content of the 117 channel.</td>
</tr>
<tr>
<td style="vertical-align:top"><b>reference_channel</b></td>
<td style="vertical-align:top">int</td><td style="vertical-align:top">114</td>
<td style="vertical-align:top">min: 114 max: 117</td><td style="vertical-align:top">Number of the reference channel (114-117).</td>
</tr>
<tr>
<td style="vertical-align:top"><b>correction_matrix</b></td>
<td style="vertical-align:top">string list</td><td style="vertical-align:top">[0.0/1.0/5.9/0.2, 0.0/2.0/5.6/0.1, 0.0/3.0/4.5/0.1, 0.1/4.0/3.5/0.1]</td>
<td style="vertical-align:top"> </td><td style="vertical-align:top">Override default values (see Documentation); use the following format: <-2Da>/<-1Da>/<+1Da>/<+2Da> ; e.g. '0/0.3/4/0' , '0.1/0.3/3/0.2'</td>
</tr>
</table>
<br>
<b>Note:</b>
<UL style="margin-top:0px;">
<LI> If a section name is documented, the documentation is displayed as tooltip.
<LI> Advanced parameter names are italic.
</UL>
</div><h2 class="groupheader">Constructor & Destructor Documentation</h2>
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<td class="memname"><a class="el" href="classOpenMS_1_1ItraqFourPlexQuantitationMethod.html">ItraqFourPlexQuantitationMethod</a> </td>
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<p>Default c'tor. </p>
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<td class="memname">~<a class="el" href="classOpenMS_1_1ItraqFourPlexQuantitationMethod.html">ItraqFourPlexQuantitationMethod</a> </td>
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<p>d'tor </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1ItraqFourPlexQuantitationMethod.html">ItraqFourPlexQuantitationMethod</a> </td>
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<p>Copy c'tor. </p>
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<h2 class="groupheader">Member Function Documentation</h2>
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<td class="memname">const <a class="el" href="classOpenMS_1_1IsobaricQuantitationMethod.html#aa7bb02779188678f665adfdcb4386bab">IsobaricChannelList</a>& getChannelInformation </td>
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<p>Returns information on the different channels used by the qunatitation method. </p>
<dl class="section return"><dt>Returns</dt><dd>A st::vector containing the channel information for this quantitation method. </dd></dl>
<p>Implements <a class="el" href="classOpenMS_1_1IsobaricQuantitationMethod.html#a4be01f758e4f0d040ca6219bb2e50203">IsobaricQuantitationMethod</a>.</p>
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<td class="memname">virtual <a class="el" href="classOpenMS_1_1Matrix.html">Matrix</a><<a class="el" href="classdouble.html">double</a>> getIsotopeCorrectionMatrix </td>
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<p>Returns an isotope correction matrix suitable for the given quantitation method. </p>
<p>Implements <a class="el" href="classOpenMS_1_1IsobaricQuantitationMethod.html#a7e53b19fbda82d25316ee853c72d23ff">IsobaricQuantitationMethod</a>.</p>
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<td class="memname">const <a class="el" href="classOpenMS_1_1String.html">String</a>& getName </td>
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<p>Methods to implement from <a class="el" href="classOpenMS_1_1IsobaricQuantitationMethod.html" title="Abstract base class describing an isobaric quantitation method in terms of the used channels and an i...">IsobaricQuantitationMethod</a>. </p>
<p>Implements <a class="el" href="classOpenMS_1_1IsobaricQuantitationMethod.html#a8c0368916329ab3be3d6cb3b8cf6d0a3">IsobaricQuantitationMethod</a>.</p>
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<td class="memname"><a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> getNumberOfChannels </td>
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<p>Gives the number of channels available for this quantitation method. </p>
<dl class="section return"><dt>Returns</dt><dd>The number of channels available for this quantitation method. </dd></dl>
<p>Implements <a class="el" href="classOpenMS_1_1IsobaricQuantitationMethod.html#a44286a57bf16754aca7cb71d8e9f3993">IsobaricQuantitationMethod</a>.</p>
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<td class="memname"><a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> getReferenceChannel </td>
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<p>Returns the index of the reference channel in the IsobaricChannelList (see <a class="el" href="classOpenMS_1_1IsobaricQuantitationMethod.html#a4be01f758e4f0d040ca6219bb2e50203" title="Returns information on the different channels used by the qunatitation method. ">IsobaricQuantitationMethod::getChannelInformation()</a>). </p>
<p>Implements <a class="el" href="classOpenMS_1_1IsobaricQuantitationMethod.html#a87769e757ff86b2a7aa9b3ab3d20dbc3">IsobaricQuantitationMethod</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1ItraqFourPlexQuantitationMethod.html">ItraqFourPlexQuantitationMethod</a>& operator= </td>
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<p>Assignment operator. </p>
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<td class="memname">void setDefaultParams_ </td>
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<p>implemented for <a class="el" href="classOpenMS_1_1DefaultParamHandler.html" title="A base class for all classes handling default parameters. ">DefaultParamHandler</a> </p>
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<td class="memname">void updateMembers_ </td>
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<p>implemented for <a class="el" href="classOpenMS_1_1DefaultParamHandler.html" title="A base class for all classes handling default parameters. ">DefaultParamHandler</a> </p>
<p>Reimplemented from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a776f7572fc4f466e9527ca233471920d">DefaultParamHandler</a>.</p>
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<h2 class="groupheader">Member Data Documentation</h2>
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<td class="memname"><a class="el" href="classOpenMS_1_1IsobaricQuantitationMethod.html#aa7bb02779188678f665adfdcb4386bab">IsobaricChannelList</a> channels_</td>
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<p>the actuacl information on the different itraq4plex channels. </p>
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<td class="memname">const <a class="el" href="classOpenMS_1_1String.html">String</a> name_</td>
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<p>The name of the quantitation method. </p>
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<td class="memname"><a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> reference_channel_</td>
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<p>The reference channel for this experiment. </p>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:27 using doxygen 1.8.5</font></TD>
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