File: classOpenMS_1_1LabelFreeLabeler.html

package info (click to toggle)
openms 1.11.1-5
  • links: PTS, VCS
  • area: main
  • in suites: jessie, jessie-kfreebsd
  • size: 436,688 kB
  • ctags: 150,907
  • sloc: cpp: 387,126; xml: 71,547; python: 7,764; ansic: 2,626; php: 2,499; sql: 737; ruby: 342; sh: 325; makefile: 128
file content (549 lines) | stat: -rw-r--r-- 53,372 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
<HTML>
<HEAD>
<TITLE>LabelFreeLabeler Class Reference</TITLE>
<LINK HREF="doxygen.css" REL="stylesheet" TYPE="text/css">
<LINK HREF="style_ini.css" REL="stylesheet" TYPE="text/css">
</HEAD>
<BODY BGCOLOR="#FFFFFF">
<A href="index.html">Home</A> &nbsp;&middot;
<A href="classes.html">Classes</A> &nbsp;&middot;
<A href="annotated.html">Annotated Classes</A> &nbsp;&middot;
<A href="modules.html">Modules</A> &nbsp;&middot;
<A href="functions_func.html">Members</A> &nbsp;&middot;
<A href="namespaces.html">Namespaces</A> &nbsp;&middot;
<A href="pages.html">Related Pages</A>
<HR style="height:1px; border:none; border-top:1px solid #c0c0c0;">
<!-- Generated by Doxygen 1.8.5 -->
<div id="nav-path" class="navpath">
  <ul>
<li class="navelem"><a class="el" href="namespaceOpenMS.html">OpenMS</a></li><li class="navelem"><a class="el" href="classOpenMS_1_1LabelFreeLabeler.html">LabelFreeLabeler</a></li>  </ul>
</div>
</div><!-- top -->
<div class="header">
  <div class="summary">
<a href="#pub-methods">Public Member Functions</a> &#124;
<a href="#pub-static-methods">Static Public Member Functions</a> &#124;
<a href="classOpenMS_1_1LabelFreeLabeler-members.html">List of all members</a>  </div>
  <div class="headertitle">
<div class="title">LabelFreeLabeler Class Reference</div>  </div>
</div><!--header-->
<div class="contents">

<p>Abstract base class for all kinds of labeling techniques.  
 <a href="classOpenMS_1_1LabelFreeLabeler.html#details">More...</a></p>

<p><code>#include &lt;<a class="el" href="LabelFreeLabeler_8h_source.html">OpenMS/SIMULATION/LABELING/LabelFreeLabeler.h</a>&gt;</code></p>
<div class="dynheader">
Inheritance diagram for LabelFreeLabeler:</div>
<div class="dyncontent">
 <div class="center">
  <img src="classOpenMS_1_1LabelFreeLabeler.png" usemap="#LabelFreeLabeler_map" alt=""/>
  <map id="LabelFreeLabeler_map" name="LabelFreeLabeler_map">
<area href="classOpenMS_1_1BaseLabeler.html" title="Abstract base class for all kinds of labeling techniques. " alt="BaseLabeler" shape="rect" coords="0,56,133,80"/>
<area href="classOpenMS_1_1DefaultParamHandler.html" title="A base class for all classes handling default parameters. " alt="DefaultParamHandler" shape="rect" coords="0,0,133,24"/>
</map>
 </div></div>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:a277c7d4fb2e674953ff62438ee72dcad"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LabelFreeLabeler.html#a277c7d4fb2e674953ff62438ee72dcad">LabelFreeLabeler</a> ()</td></tr>
<tr class="memdesc:a277c7d4fb2e674953ff62438ee72dcad"><td class="mdescLeft">&#160;</td><td class="mdescRight">default constructor  <a href="#a277c7d4fb2e674953ff62438ee72dcad">More...</a><br/></td></tr>
<tr class="separator:a277c7d4fb2e674953ff62438ee72dcad"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a1ff4750d316b800e875cd04602b05e26"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LabelFreeLabeler.html#a1ff4750d316b800e875cd04602b05e26">~LabelFreeLabeler</a> ()</td></tr>
<tr class="memdesc:a1ff4750d316b800e875cd04602b05e26"><td class="mdescLeft">&#160;</td><td class="mdescRight">destructor  <a href="#a1ff4750d316b800e875cd04602b05e26">More...</a><br/></td></tr>
<tr class="separator:a1ff4750d316b800e875cd04602b05e26"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ad312929bb6a8d1088428f0b61181135c"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LabelFreeLabeler.html#ad312929bb6a8d1088428f0b61181135c">preCheck</a> (<a class="el" href="classOpenMS_1_1Param.html">Param</a> &amp;param) const </td></tr>
<tr class="memdesc:ad312929bb6a8d1088428f0b61181135c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks the (simulation) params passed if they are consistent with the labeling technique.  <a href="#ad312929bb6a8d1088428f0b61181135c">More...</a><br/></td></tr>
<tr class="separator:ad312929bb6a8d1088428f0b61181135c"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ab453c939cb92ff888c53f5e6de3b4a69"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LabelFreeLabeler.html#ab453c939cb92ff888c53f5e6de3b4a69">setUpHook</a> (<a class="el" href="namespaceOpenMS.html#a5377a8d620ef376a0b1eb2503b847e79">FeatureMapSimVector</a> &amp;)</td></tr>
<tr class="memdesc:ab453c939cb92ff888c53f5e6de3b4a69"><td class="mdescLeft">&#160;</td><td class="mdescRight">Hook to prepare the simulation process.  <a href="#ab453c939cb92ff888c53f5e6de3b4a69">More...</a><br/></td></tr>
<tr class="separator:ab453c939cb92ff888c53f5e6de3b4a69"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a4e2bc5baf58b7c0dcf27510809355115"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LabelFreeLabeler.html#a4e2bc5baf58b7c0dcf27510809355115">postDigestHook</a> (<a class="el" href="namespaceOpenMS.html#a5377a8d620ef376a0b1eb2503b847e79">FeatureMapSimVector</a> &amp;)</td></tr>
<tr class="memdesc:a4e2bc5baf58b7c0dcf27510809355115"><td class="mdescLeft">&#160;</td><td class="mdescRight">Labeling between digestion and rt simulation.  <a href="#a4e2bc5baf58b7c0dcf27510809355115">More...</a><br/></td></tr>
<tr class="separator:a4e2bc5baf58b7c0dcf27510809355115"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ab14670be6db3b4f96ccb886900106733"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LabelFreeLabeler.html#ab14670be6db3b4f96ccb886900106733">postRTHook</a> (<a class="el" href="namespaceOpenMS.html#a5377a8d620ef376a0b1eb2503b847e79">FeatureMapSimVector</a> &amp;)</td></tr>
<tr class="memdesc:ab14670be6db3b4f96ccb886900106733"><td class="mdescLeft">&#160;</td><td class="mdescRight">Labeling after rt simulation.  <a href="#ab14670be6db3b4f96ccb886900106733">More...</a><br/></td></tr>
<tr class="separator:ab14670be6db3b4f96ccb886900106733"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:afb6136a53321815a4ccab0c01642a306"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LabelFreeLabeler.html#afb6136a53321815a4ccab0c01642a306">postDetectabilityHook</a> (<a class="el" href="namespaceOpenMS.html#a5377a8d620ef376a0b1eb2503b847e79">FeatureMapSimVector</a> &amp;)</td></tr>
<tr class="memdesc:afb6136a53321815a4ccab0c01642a306"><td class="mdescLeft">&#160;</td><td class="mdescRight">Labeling after detectability simulation.  <a href="#afb6136a53321815a4ccab0c01642a306">More...</a><br/></td></tr>
<tr class="separator:afb6136a53321815a4ccab0c01642a306"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:acf225fd7177ec90269aced5e520aba01"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LabelFreeLabeler.html#acf225fd7177ec90269aced5e520aba01">postIonizationHook</a> (<a class="el" href="namespaceOpenMS.html#a5377a8d620ef376a0b1eb2503b847e79">FeatureMapSimVector</a> &amp;)</td></tr>
<tr class="memdesc:acf225fd7177ec90269aced5e520aba01"><td class="mdescLeft">&#160;</td><td class="mdescRight">Labeling after ionization.  <a href="#acf225fd7177ec90269aced5e520aba01">More...</a><br/></td></tr>
<tr class="separator:acf225fd7177ec90269aced5e520aba01"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a4fc3be969e53849728ce52fb0360aaf3"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LabelFreeLabeler.html#a4fc3be969e53849728ce52fb0360aaf3">postRawMSHook</a> (<a class="el" href="namespaceOpenMS.html#a5377a8d620ef376a0b1eb2503b847e79">FeatureMapSimVector</a> &amp;)</td></tr>
<tr class="memdesc:a4fc3be969e53849728ce52fb0360aaf3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Labeling after raw signal generation.  <a href="#a4fc3be969e53849728ce52fb0360aaf3">More...</a><br/></td></tr>
<tr class="separator:a4fc3be969e53849728ce52fb0360aaf3"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a2c12d70a72694f6ac28c3150d623cecc"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LabelFreeLabeler.html#a2c12d70a72694f6ac28c3150d623cecc">postRawTandemMSHook</a> (<a class="el" href="namespaceOpenMS.html#a5377a8d620ef376a0b1eb2503b847e79">FeatureMapSimVector</a> &amp;, <a class="el" href="namespaceOpenMS.html#ad8fab082e8d37c2f39ca13d92608d71d">MSSimExperiment</a> &amp;)</td></tr>
<tr class="memdesc:a2c12d70a72694f6ac28c3150d623cecc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Labeling after Tandem MS (e.g. iTRAQ)  <a href="#a2c12d70a72694f6ac28c3150d623cecc">More...</a><br/></td></tr>
<tr class="separator:a2c12d70a72694f6ac28c3150d623cecc"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pub_methods_classOpenMS_1_1BaseLabeler"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classOpenMS_1_1BaseLabeler')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classOpenMS_1_1BaseLabeler.html">BaseLabeler</a></td></tr>
<tr class="memitem:a8d9574a4f5dcf506b57ed1d5ef62eafb inherit pub_methods_classOpenMS_1_1BaseLabeler"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BaseLabeler.html#a8d9574a4f5dcf506b57ed1d5ef62eafb">BaseLabeler</a> ()</td></tr>
<tr class="memdesc:a8d9574a4f5dcf506b57ed1d5ef62eafb inherit pub_methods_classOpenMS_1_1BaseLabeler"><td class="mdescLeft">&#160;</td><td class="mdescRight">constructor  <a href="#a8d9574a4f5dcf506b57ed1d5ef62eafb">More...</a><br/></td></tr>
<tr class="separator:a8d9574a4f5dcf506b57ed1d5ef62eafb inherit pub_methods_classOpenMS_1_1BaseLabeler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a5ef109fcb4c3f83e0511f06e2ac3203a inherit pub_methods_classOpenMS_1_1BaseLabeler"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BaseLabeler.html#a5ef109fcb4c3f83e0511f06e2ac3203a">~BaseLabeler</a> ()</td></tr>
<tr class="memdesc:a5ef109fcb4c3f83e0511f06e2ac3203a inherit pub_methods_classOpenMS_1_1BaseLabeler"><td class="mdescLeft">&#160;</td><td class="mdescRight">destructor  <a href="#a5ef109fcb4c3f83e0511f06e2ac3203a">More...</a><br/></td></tr>
<tr class="separator:a5ef109fcb4c3f83e0511f06e2ac3203a inherit pub_methods_classOpenMS_1_1BaseLabeler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:abe2fce5095efeecbcd815817430058e0 inherit pub_methods_classOpenMS_1_1BaseLabeler"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="classOpenMS_1_1Param.html">Param</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BaseLabeler.html#abe2fce5095efeecbcd815817430058e0">getDefaultParameters</a> () const </td></tr>
<tr class="memdesc:abe2fce5095efeecbcd815817430058e0 inherit pub_methods_classOpenMS_1_1BaseLabeler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns the default parameters. Re-implement.  <a href="#abe2fce5095efeecbcd815817430058e0">More...</a><br/></td></tr>
<tr class="separator:abe2fce5095efeecbcd815817430058e0 inherit pub_methods_classOpenMS_1_1BaseLabeler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:abf6ea7bdfe009f1dc969fe767b963322 inherit pub_methods_classOpenMS_1_1BaseLabeler"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BaseLabeler.html#abf6ea7bdfe009f1dc969fe767b963322">setRnd</a> (const <a class="el" href="structOpenMS_1_1SimRandomNumberGenerator.html">SimRandomNumberGenerator</a> &amp;rng)</td></tr>
<tr class="memdesc:abf6ea7bdfe009f1dc969fe767b963322 inherit pub_methods_classOpenMS_1_1BaseLabeler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set the random number generator.  <a href="#abf6ea7bdfe009f1dc969fe767b963322">More...</a><br/></td></tr>
<tr class="separator:abf6ea7bdfe009f1dc969fe767b963322 inherit pub_methods_classOpenMS_1_1BaseLabeler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a90aed6cc7a020052c897817c63c2a3eb inherit pub_methods_classOpenMS_1_1BaseLabeler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BaseLabeler.html#a90aed6cc7a020052c897817c63c2a3eb">getConsensus</a> ()</td></tr>
<tr class="separator:a90aed6cc7a020052c897817c63c2a3eb inherit pub_methods_classOpenMS_1_1BaseLabeler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a95044aa92ba3e9d7f72ff5b3acd0b2a0 inherit pub_methods_classOpenMS_1_1BaseLabeler"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BaseLabeler.html#a95044aa92ba3e9d7f72ff5b3acd0b2a0">getDescription</a> () const </td></tr>
<tr class="memdesc:a95044aa92ba3e9d7f72ff5b3acd0b2a0 inherit pub_methods_classOpenMS_1_1BaseLabeler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get short description of the labeler (e.g., channels used)  <a href="#a95044aa92ba3e9d7f72ff5b3acd0b2a0">More...</a><br/></td></tr>
<tr class="separator:a95044aa92ba3e9d7f72ff5b3acd0b2a0 inherit pub_methods_classOpenMS_1_1BaseLabeler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a3f75d542eb488ecd8650b14673d16dd2 inherit pub_methods_classOpenMS_1_1BaseLabeler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BaseLabeler.html#a3f75d542eb488ecd8650b14673d16dd2">getChannelIntensityName</a> (const <a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> channel_index) const </td></tr>
<tr class="memdesc:a3f75d542eb488ecd8650b14673d16dd2 inherit pub_methods_classOpenMS_1_1BaseLabeler"><td class="mdescLeft">&#160;</td><td class="mdescRight">to ensure standardized meta value names across labelers for channel intensity  <a href="#a3f75d542eb488ecd8650b14673d16dd2">More...</a><br/></td></tr>
<tr class="separator:a3f75d542eb488ecd8650b14673d16dd2 inherit pub_methods_classOpenMS_1_1BaseLabeler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pub_methods_classOpenMS_1_1DefaultParamHandler"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classOpenMS_1_1DefaultParamHandler')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td></tr>
<tr class="memitem:afb6802fda161cb0c1a4a05597f94aecc inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#afb6802fda161cb0c1a4a05597f94aecc">DefaultParamHandler</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;name)</td></tr>
<tr class="memdesc:afb6802fda161cb0c1a4a05597f94aecc inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructor with name that is displayed in error messages.  <a href="#afb6802fda161cb0c1a4a05597f94aecc">More...</a><br/></td></tr>
<tr class="separator:afb6802fda161cb0c1a4a05597f94aecc inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a954da7eef3cfddda446574eaadd20abb inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a954da7eef3cfddda446574eaadd20abb">DefaultParamHandler</a> (const <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &amp;rhs)</td></tr>
<tr class="memdesc:a954da7eef3cfddda446574eaadd20abb inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Copy constructor.  <a href="#a954da7eef3cfddda446574eaadd20abb">More...</a><br/></td></tr>
<tr class="separator:a954da7eef3cfddda446574eaadd20abb inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a11e9d6dd34fe8860874aa8abe0ec121b inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a11e9d6dd34fe8860874aa8abe0ec121b">~DefaultParamHandler</a> ()</td></tr>
<tr class="memdesc:a11e9d6dd34fe8860874aa8abe0ec121b inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Destructor.  <a href="#a11e9d6dd34fe8860874aa8abe0ec121b">More...</a><br/></td></tr>
<tr class="separator:a11e9d6dd34fe8860874aa8abe0ec121b inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ae6b6d68036a573a44f6609460ba2dfb6 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ae6b6d68036a573a44f6609460ba2dfb6">operator=</a> (const <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &amp;rhs)</td></tr>
<tr class="memdesc:ae6b6d68036a573a44f6609460ba2dfb6 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Assignment operator.  <a href="#ae6b6d68036a573a44f6609460ba2dfb6">More...</a><br/></td></tr>
<tr class="separator:ae6b6d68036a573a44f6609460ba2dfb6 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ac435f2dd4d9f9328db83af97129a8d7e inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ac435f2dd4d9f9328db83af97129a8d7e">operator==</a> (const <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &amp;rhs) const </td></tr>
<tr class="memdesc:ac435f2dd4d9f9328db83af97129a8d7e inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Equality operator.  <a href="#ac435f2dd4d9f9328db83af97129a8d7e">More...</a><br/></td></tr>
<tr class="separator:ac435f2dd4d9f9328db83af97129a8d7e inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:abc8067511cfc949ae942ea2b08588f81 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#abc8067511cfc949ae942ea2b08588f81">setParameters</a> (const <a class="el" href="classOpenMS_1_1Param.html">Param</a> &amp;param)</td></tr>
<tr class="memdesc:abc8067511cfc949ae942ea2b08588f81 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets the parameters.  <a href="#abc8067511cfc949ae942ea2b08588f81">More...</a><br/></td></tr>
<tr class="separator:abc8067511cfc949ae942ea2b08588f81 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a7f6aab5a7dfbdd1c062a4352a29361f3 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1Param.html">Param</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a7f6aab5a7dfbdd1c062a4352a29361f3">getParameters</a> () const </td></tr>
<tr class="memdesc:a7f6aab5a7dfbdd1c062a4352a29361f3 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Non-mutable access to the parameters.  <a href="#a7f6aab5a7dfbdd1c062a4352a29361f3">More...</a><br/></td></tr>
<tr class="separator:a7f6aab5a7dfbdd1c062a4352a29361f3 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a02f02fa9832ca3e8d47c575a39803a2a inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1Param.html">Param</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a02f02fa9832ca3e8d47c575a39803a2a">getDefaults</a> () const </td></tr>
<tr class="memdesc:a02f02fa9832ca3e8d47c575a39803a2a inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Non-mutable access to the default parameters.  <a href="#a02f02fa9832ca3e8d47c575a39803a2a">More...</a><br/></td></tr>
<tr class="separator:a02f02fa9832ca3e8d47c575a39803a2a inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aaee0f2845288173de9f6ad47e6ad31d5 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#aaee0f2845288173de9f6ad47e6ad31d5">getName</a> () const </td></tr>
<tr class="memdesc:aaee0f2845288173de9f6ad47e6ad31d5 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Non-mutable access to the name.  <a href="#aaee0f2845288173de9f6ad47e6ad31d5">More...</a><br/></td></tr>
<tr class="separator:aaee0f2845288173de9f6ad47e6ad31d5 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a77d37f2e1c12e8bd33ea0e660a89e927 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a77d37f2e1c12e8bd33ea0e660a89e927">setName</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;name)</td></tr>
<tr class="memdesc:a77d37f2e1c12e8bd33ea0e660a89e927 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Mutable access to the name.  <a href="#a77d37f2e1c12e8bd33ea0e660a89e927">More...</a><br/></td></tr>
<tr class="separator:a77d37f2e1c12e8bd33ea0e660a89e927 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a768d4a2093627a2f34728656a9721bdf inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const std::vector&lt; <a class="el" href="classOpenMS_1_1String.html">String</a> &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a768d4a2093627a2f34728656a9721bdf">getSubsections</a> () const </td></tr>
<tr class="memdesc:a768d4a2093627a2f34728656a9721bdf inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Non-mutable access to the registered subsections.  <a href="#a768d4a2093627a2f34728656a9721bdf">More...</a><br/></td></tr>
<tr class="separator:a768d4a2093627a2f34728656a9721bdf inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-static-methods"></a>
Static Public Member Functions</h2></td></tr>
<tr class="memitem:a4de43939ecee328ea4cd203a39fb3dc0"><td class="memItemLeft" align="right" valign="top">static <a class="el" href="classOpenMS_1_1BaseLabeler.html">BaseLabeler</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LabelFreeLabeler.html#a4de43939ecee328ea4cd203a39fb3dc0">create</a> ()</td></tr>
<tr class="memdesc:a4de43939ecee328ea4cd203a39fb3dc0"><td class="mdescLeft">&#160;</td><td class="mdescRight">create new <a class="el" href="classOpenMS_1_1GaussModel.html" title="Normal distribution approximated using linear interpolation. ">GaussModel</a> object (needed by <a class="el" href="classOpenMS_1_1Factory.html" title="Returns FactoryProduct* based on the name of the desired concrete FactoryProduct. ...">Factory</a>)  <a href="#a4de43939ecee328ea4cd203a39fb3dc0">More...</a><br/></td></tr>
<tr class="separator:a4de43939ecee328ea4cd203a39fb3dc0"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:af73fd15708e50e77665070023a09cc87"><td class="memItemLeft" align="right" valign="top">static const <a class="el" href="classOpenMS_1_1String.html">String</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LabelFreeLabeler.html#af73fd15708e50e77665070023a09cc87">getProductName</a> ()</td></tr>
<tr class="memdesc:af73fd15708e50e77665070023a09cc87"><td class="mdescLeft">&#160;</td><td class="mdescRight">name of the model (needed by <a class="el" href="classOpenMS_1_1Factory.html" title="Returns FactoryProduct* based on the name of the desired concrete FactoryProduct. ...">Factory</a>)  <a href="#af73fd15708e50e77665070023a09cc87">More...</a><br/></td></tr>
<tr class="separator:af73fd15708e50e77665070023a09cc87"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pub_static_methods_classOpenMS_1_1BaseLabeler"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classOpenMS_1_1BaseLabeler')"><img src="closed.png" alt="-"/>&#160;Static Public Member Functions inherited from <a class="el" href="classOpenMS_1_1BaseLabeler.html">BaseLabeler</a></td></tr>
<tr class="memitem:a0619c54ebc0b33a02eb71f942bb00111 inherit pub_static_methods_classOpenMS_1_1BaseLabeler"><td class="memItemLeft" align="right" valign="top">static void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BaseLabeler.html#a0619c54ebc0b33a02eb71f942bb00111">registerChildren</a> ()</td></tr>
<tr class="memdesc:a0619c54ebc0b33a02eb71f942bb00111 inherit pub_static_methods_classOpenMS_1_1BaseLabeler"><td class="mdescLeft">&#160;</td><td class="mdescRight">register all derived classes here (implemented in file <a class="el" href="BaseLabeler__impl_8h.html">BaseLabeler_impl.h</a>)  <a href="#a0619c54ebc0b33a02eb71f942bb00111">More...</a><br/></td></tr>
<tr class="separator:a0619c54ebc0b33a02eb71f942bb00111 inherit pub_static_methods_classOpenMS_1_1BaseLabeler"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="inherited"></a>
Additional Inherited Members</h2></td></tr>
<tr class="inherit_header pro_methods_classOpenMS_1_1BaseLabeler"><td colspan="2" onclick="javascript:toggleInherit('pro_methods_classOpenMS_1_1BaseLabeler')"><img src="closed.png" alt="-"/>&#160;Protected Member Functions inherited from <a class="el" href="classOpenMS_1_1BaseLabeler.html">BaseLabeler</a></td></tr>
<tr class="memitem:a7d06bf207cf974a9c8727c6f8533f129 inherit pro_methods_classOpenMS_1_1BaseLabeler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespaceOpenMS.html#a9396dc872898d760f035465bc56585d8">FeatureMapSim</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BaseLabeler.html#a7d06bf207cf974a9c8727c6f8533f129">mergeProteinIdentificationsMaps_</a> (const <a class="el" href="namespaceOpenMS.html#a5377a8d620ef376a0b1eb2503b847e79">FeatureMapSimVector</a> &amp;maps)</td></tr>
<tr class="memdesc:a7d06bf207cf974a9c8727c6f8533f129 inherit pro_methods_classOpenMS_1_1BaseLabeler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Creates an empty <a class="el" href="classOpenMS_1_1FeatureMap.html" title="A container for features. ">FeatureMap</a> with the merged ProteinIdentifications from all FeatureMaps contained in <code>maps</code>.  <a href="#a7d06bf207cf974a9c8727c6f8533f129">More...</a><br/></td></tr>
<tr class="separator:a7d06bf207cf974a9c8727c6f8533f129 inherit pro_methods_classOpenMS_1_1BaseLabeler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a29c8755364e4efeb0df7ccbeaf3a3a9d inherit pro_methods_classOpenMS_1_1BaseLabeler"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BaseLabeler.html#a29c8755364e4efeb0df7ccbeaf3a3a9d">mergeProteinAccessions_</a> (<a class="el" href="classOpenMS_1_1Feature.html">Feature</a> &amp;target, const <a class="el" href="classOpenMS_1_1Feature.html">Feature</a> &amp;source) const </td></tr>
<tr class="memdesc:a29c8755364e4efeb0df7ccbeaf3a3a9d inherit pro_methods_classOpenMS_1_1BaseLabeler"><td class="mdescLeft">&#160;</td><td class="mdescRight">join all protein references of two features  <a href="#a29c8755364e4efeb0df7ccbeaf3a3a9d">More...</a><br/></td></tr>
<tr class="separator:a29c8755364e4efeb0df7ccbeaf3a3a9d inherit pro_methods_classOpenMS_1_1BaseLabeler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ad50a70450d9c1a0f822a34250057f385 inherit pro_methods_classOpenMS_1_1BaseLabeler"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BaseLabeler.html#ad50a70450d9c1a0f822a34250057f385">recomputeConsensus_</a> (const <a class="el" href="namespaceOpenMS.html#a9396dc872898d760f035465bc56585d8">FeatureMapSim</a> &amp;simulated_features)</td></tr>
<tr class="memdesc:ad50a70450d9c1a0f822a34250057f385 inherit pro_methods_classOpenMS_1_1BaseLabeler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Based on the stored consensus recompute the associations for the passed features, assuming that the features where derived from the features stored in the consensus.  <a href="#ad50a70450d9c1a0f822a34250057f385">More...</a><br/></td></tr>
<tr class="separator:ad50a70450d9c1a0f822a34250057f385 inherit pro_methods_classOpenMS_1_1BaseLabeler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pro_methods_classOpenMS_1_1DefaultParamHandler"><td colspan="2" onclick="javascript:toggleInherit('pro_methods_classOpenMS_1_1DefaultParamHandler')"><img src="closed.png" alt="-"/>&#160;Protected Member Functions inherited from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td></tr>
<tr class="memitem:a776f7572fc4f466e9527ca233471920d inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a776f7572fc4f466e9527ca233471920d">updateMembers_</a> ()</td></tr>
<tr class="memdesc:a776f7572fc4f466e9527ca233471920d inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">This method is used to update extra member variables at the end of the <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#abc8067511cfc949ae942ea2b08588f81" title="Sets the parameters. ">setParameters()</a> method.  <a href="#a776f7572fc4f466e9527ca233471920d">More...</a><br/></td></tr>
<tr class="separator:a776f7572fc4f466e9527ca233471920d inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a2802c591e6d7fd3fd9cc35f5e875d0ba inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a2802c591e6d7fd3fd9cc35f5e875d0ba">defaultsToParam_</a> ()</td></tr>
<tr class="memdesc:a2802c591e6d7fd3fd9cc35f5e875d0ba inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Updates the parameters after the defaults have been set in the constructor.  <a href="#a2802c591e6d7fd3fd9cc35f5e875d0ba">More...</a><br/></td></tr>
<tr class="separator:a2802c591e6d7fd3fd9cc35f5e875d0ba inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pro_attribs_classOpenMS_1_1BaseLabeler"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classOpenMS_1_1BaseLabeler')"><img src="closed.png" alt="-"/>&#160;Protected Attributes inherited from <a class="el" href="classOpenMS_1_1BaseLabeler.html">BaseLabeler</a></td></tr>
<tr class="memitem:a48ce86807bfb996dc261b6b1e4e47e35 inherit pro_attribs_classOpenMS_1_1BaseLabeler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BaseLabeler.html#a48ce86807bfb996dc261b6b1e4e47e35">consensus_</a></td></tr>
<tr class="separator:a48ce86807bfb996dc261b6b1e4e47e35 inherit pro_attribs_classOpenMS_1_1BaseLabeler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:acf6ab009189a770808e644baed4a2c6e inherit pro_attribs_classOpenMS_1_1BaseLabeler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structOpenMS_1_1SimRandomNumberGenerator.html">SimRandomNumberGenerator</a> const *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BaseLabeler.html#acf6ab009189a770808e644baed4a2c6e">rng_</a></td></tr>
<tr class="separator:acf6ab009189a770808e644baed4a2c6e inherit pro_attribs_classOpenMS_1_1BaseLabeler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a988e1f35dc9b477bbf287ecf7b8cee82 inherit pro_attribs_classOpenMS_1_1BaseLabeler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BaseLabeler.html#a988e1f35dc9b477bbf287ecf7b8cee82">channel_description_</a></td></tr>
<tr class="separator:a988e1f35dc9b477bbf287ecf7b8cee82 inherit pro_attribs_classOpenMS_1_1BaseLabeler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pro_attribs_classOpenMS_1_1DefaultParamHandler"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classOpenMS_1_1DefaultParamHandler')"><img src="closed.png" alt="-"/>&#160;Protected Attributes inherited from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td></tr>
<tr class="memitem:a28c73e623c63a4fe3bfceb1ae8274f39 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Param.html">Param</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a28c73e623c63a4fe3bfceb1ae8274f39">param_</a></td></tr>
<tr class="memdesc:a28c73e623c63a4fe3bfceb1ae8274f39 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Container for current parameters.  <a href="#a28c73e623c63a4fe3bfceb1ae8274f39">More...</a><br/></td></tr>
<tr class="separator:a28c73e623c63a4fe3bfceb1ae8274f39 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a761b1937850c141d0c6fff0e4d633a04 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Param.html">Param</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a761b1937850c141d0c6fff0e4d633a04">defaults_</a></td></tr>
<tr class="memdesc:a761b1937850c141d0c6fff0e4d633a04 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Container for default parameters. This member should be filled in the constructor of derived classes!  <a href="#a761b1937850c141d0c6fff0e4d633a04">More...</a><br/></td></tr>
<tr class="separator:a761b1937850c141d0c6fff0e4d633a04 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ac4b0e20bc59c7a5afe016c69067e428c inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">std::vector&lt; <a class="el" href="classOpenMS_1_1String.html">String</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ac4b0e20bc59c7a5afe016c69067e428c">subsections_</a></td></tr>
<tr class="memdesc:ac4b0e20bc59c7a5afe016c69067e428c inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Container for registered subsections. This member should be filled in the constructor of derived classes!  <a href="#ac4b0e20bc59c7a5afe016c69067e428c">More...</a><br/></td></tr>
<tr class="separator:ac4b0e20bc59c7a5afe016c69067e428c inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a5a51f3f150b09068256195e934339a19 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a5a51f3f150b09068256195e934339a19">error_name_</a></td></tr>
<tr class="memdesc:a5a51f3f150b09068256195e934339a19 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name that is displayed in error messages during the parameter checking.  <a href="#a5a51f3f150b09068256195e934339a19">More...</a><br/></td></tr>
<tr class="separator:a5a51f3f150b09068256195e934339a19 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a7c3b265b697a57615da5cd3274780efd inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a7c3b265b697a57615da5cd3274780efd">check_defaults_</a></td></tr>
<tr class="memdesc:a7c3b265b697a57615da5cd3274780efd inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">If this member is set to false no checking if parameters in done;.  <a href="#a7c3b265b697a57615da5cd3274780efd">More...</a><br/></td></tr>
<tr class="separator:a7c3b265b697a57615da5cd3274780efd inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aba444910e4fccb93f91bf7ab135f508a inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#aba444910e4fccb93f91bf7ab135f508a">warn_empty_defaults_</a></td></tr>
<tr class="memdesc:aba444910e4fccb93f91bf7ab135f508a inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">If this member is set to false no warning is emitted when defaults are empty;.  <a href="#aba444910e4fccb93f91bf7ab135f508a">More...</a><br/></td></tr>
<tr class="separator:aba444910e4fccb93f91bf7ab135f508a inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table>
<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>Abstract base class for all kinds of labeling techniques. </p>
</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
<a class="anchor" id="a277c7d4fb2e674953ff62438ee72dcad"></a>
<div class="memitem">
<div class="memproto">
      <table class="memname">
        <tr>
          <td class="memname"><a class="el" href="classOpenMS_1_1LabelFreeLabeler.html">LabelFreeLabeler</a> </td>
          <td>(</td>
          <td class="paramname"></td><td>)</td>
          <td></td>
        </tr>
      </table>
</div><div class="memdoc">

<p>default constructor </p>

</div>
</div>
<a class="anchor" id="a1ff4750d316b800e875cd04602b05e26"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
  <tr>
  <td class="mlabels-left">
      <table class="memname">
        <tr>
          <td class="memname">virtual ~<a class="el" href="classOpenMS_1_1LabelFreeLabeler.html">LabelFreeLabeler</a> </td>
          <td>(</td>
          <td class="paramname"></td><td>)</td>
          <td></td>
        </tr>
      </table>
  </td>
  <td class="mlabels-right">
<span class="mlabels"><span class="mlabel">virtual</span></span>  </td>
  </tr>
</table>
</div><div class="memdoc">

<p>destructor </p>

</div>
</div>
<h2 class="groupheader">Member Function Documentation</h2>
<a class="anchor" id="a4de43939ecee328ea4cd203a39fb3dc0"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
  <tr>
  <td class="mlabels-left">
      <table class="memname">
        <tr>
          <td class="memname">static <a class="el" href="classOpenMS_1_1BaseLabeler.html">BaseLabeler</a>* create </td>
          <td>(</td>
          <td class="paramname"></td><td>)</td>
          <td></td>
        </tr>
      </table>
  </td>
  <td class="mlabels-right">
<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">static</span></span>  </td>
  </tr>
</table>
</div><div class="memdoc">

<p>create new <a class="el" href="classOpenMS_1_1GaussModel.html" title="Normal distribution approximated using linear interpolation. ">GaussModel</a> object (needed by <a class="el" href="classOpenMS_1_1Factory.html" title="Returns FactoryProduct* based on the name of the desired concrete FactoryProduct. ...">Factory</a>) </p>

<p>Referenced by <a class="el" href="classOpenMS_1_1BaseLabeler.html#a0619c54ebc0b33a02eb71f942bb00111">BaseLabeler::registerChildren()</a>.</p>

</div>
</div>
<a class="anchor" id="af73fd15708e50e77665070023a09cc87"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
  <tr>
  <td class="mlabels-left">
      <table class="memname">
        <tr>
          <td class="memname">static const <a class="el" href="classOpenMS_1_1String.html">String</a> getProductName </td>
          <td>(</td>
          <td class="paramname"></td><td>)</td>
          <td></td>
        </tr>
      </table>
  </td>
  <td class="mlabels-right">
<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">static</span></span>  </td>
  </tr>
</table>
</div><div class="memdoc">

<p>name of the model (needed by <a class="el" href="classOpenMS_1_1Factory.html" title="Returns FactoryProduct* based on the name of the desired concrete FactoryProduct. ...">Factory</a>) </p>

<p>Referenced by <a class="el" href="classOpenMS_1_1BaseLabeler.html#a0619c54ebc0b33a02eb71f942bb00111">BaseLabeler::registerChildren()</a>.</p>

</div>
</div>
<a class="anchor" id="afb6136a53321815a4ccab0c01642a306"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
  <tr>
  <td class="mlabels-left">
      <table class="memname">
        <tr>
          <td class="memname">void postDetectabilityHook </td>
          <td>(</td>
          <td class="paramtype"><a class="el" href="namespaceOpenMS.html#a5377a8d620ef376a0b1eb2503b847e79">FeatureMapSimVector</a> &amp;&#160;</td>
          <td class="paramname"></td><td>)</td>
          <td></td>
        </tr>
      </table>
  </td>
  <td class="mlabels-right">
<span class="mlabels"><span class="mlabel">virtual</span></span>  </td>
  </tr>
</table>
</div><div class="memdoc">

<p>Labeling after detectability simulation. </p>

<p>Implements <a class="el" href="classOpenMS_1_1BaseLabeler.html#a3a4baf4c04e0c6bad29c5f2958d9c094">BaseLabeler</a>.</p>

</div>
</div>
<a class="anchor" id="a4e2bc5baf58b7c0dcf27510809355115"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
  <tr>
  <td class="mlabels-left">
      <table class="memname">
        <tr>
          <td class="memname">void postDigestHook </td>
          <td>(</td>
          <td class="paramtype"><a class="el" href="namespaceOpenMS.html#a5377a8d620ef376a0b1eb2503b847e79">FeatureMapSimVector</a> &amp;&#160;</td>
          <td class="paramname"></td><td>)</td>
          <td></td>
        </tr>
      </table>
  </td>
  <td class="mlabels-right">
<span class="mlabels"><span class="mlabel">virtual</span></span>  </td>
  </tr>
</table>
</div><div class="memdoc">

<p>Labeling between digestion and rt simulation. </p>

<p>Implements <a class="el" href="classOpenMS_1_1BaseLabeler.html#afa4bac3e0bd3d42fc1dca1a066c7c46e">BaseLabeler</a>.</p>

</div>
</div>
<a class="anchor" id="acf225fd7177ec90269aced5e520aba01"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
  <tr>
  <td class="mlabels-left">
      <table class="memname">
        <tr>
          <td class="memname">void postIonizationHook </td>
          <td>(</td>
          <td class="paramtype"><a class="el" href="namespaceOpenMS.html#a5377a8d620ef376a0b1eb2503b847e79">FeatureMapSimVector</a> &amp;&#160;</td>
          <td class="paramname"></td><td>)</td>
          <td></td>
        </tr>
      </table>
  </td>
  <td class="mlabels-right">
<span class="mlabels"><span class="mlabel">virtual</span></span>  </td>
  </tr>
</table>
</div><div class="memdoc">

<p>Labeling after ionization. </p>

<p>Implements <a class="el" href="classOpenMS_1_1BaseLabeler.html#a5e4bdc27fbdcfd37de0eff271a0a1778">BaseLabeler</a>.</p>

</div>
</div>
<a class="anchor" id="a4fc3be969e53849728ce52fb0360aaf3"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
  <tr>
  <td class="mlabels-left">
      <table class="memname">
        <tr>
          <td class="memname">void postRawMSHook </td>
          <td>(</td>
          <td class="paramtype"><a class="el" href="namespaceOpenMS.html#a5377a8d620ef376a0b1eb2503b847e79">FeatureMapSimVector</a> &amp;&#160;</td>
          <td class="paramname"></td><td>)</td>
          <td></td>
        </tr>
      </table>
  </td>
  <td class="mlabels-right">
<span class="mlabels"><span class="mlabel">virtual</span></span>  </td>
  </tr>
</table>
</div><div class="memdoc">

<p>Labeling after raw signal generation. </p>

<p>Implements <a class="el" href="classOpenMS_1_1BaseLabeler.html#a2a2d3d6ee40ed2050887ecd55e959f37">BaseLabeler</a>.</p>

</div>
</div>
<a class="anchor" id="a2c12d70a72694f6ac28c3150d623cecc"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
  <tr>
  <td class="mlabels-left">
      <table class="memname">
        <tr>
          <td class="memname">void postRawTandemMSHook </td>
          <td>(</td>
          <td class="paramtype"><a class="el" href="namespaceOpenMS.html#a5377a8d620ef376a0b1eb2503b847e79">FeatureMapSimVector</a> &amp;&#160;</td>
          <td class="paramname">, </td>
        </tr>
        <tr>
          <td class="paramkey"></td>
          <td></td>
          <td class="paramtype"><a class="el" href="namespaceOpenMS.html#ad8fab082e8d37c2f39ca13d92608d71d">MSSimExperiment</a> &amp;&#160;</td>
          <td class="paramname">&#160;</td>
        </tr>
        <tr>
          <td></td>
          <td>)</td>
          <td></td><td></td>
        </tr>
      </table>
  </td>
  <td class="mlabels-right">
<span class="mlabels"><span class="mlabel">virtual</span></span>  </td>
  </tr>
</table>
</div><div class="memdoc">

<p>Labeling after Tandem MS (e.g. iTRAQ) </p>

<p>Implements <a class="el" href="classOpenMS_1_1BaseLabeler.html#a1d04088b5867c87f8da1cf3cdffd386b">BaseLabeler</a>.</p>

</div>
</div>
<a class="anchor" id="ab14670be6db3b4f96ccb886900106733"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
  <tr>
  <td class="mlabels-left">
      <table class="memname">
        <tr>
          <td class="memname">void postRTHook </td>
          <td>(</td>
          <td class="paramtype"><a class="el" href="namespaceOpenMS.html#a5377a8d620ef376a0b1eb2503b847e79">FeatureMapSimVector</a> &amp;&#160;</td>
          <td class="paramname"></td><td>)</td>
          <td></td>
        </tr>
      </table>
  </td>
  <td class="mlabels-right">
<span class="mlabels"><span class="mlabel">virtual</span></span>  </td>
  </tr>
</table>
</div><div class="memdoc">

<p>Labeling after rt simulation. </p>

<p>Implements <a class="el" href="classOpenMS_1_1BaseLabeler.html#a29264a786af342480b2fba9007bfa6a0">BaseLabeler</a>.</p>

</div>
</div>
<a class="anchor" id="ad312929bb6a8d1088428f0b61181135c"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
  <tr>
  <td class="mlabels-left">
      <table class="memname">
        <tr>
          <td class="memname">void preCheck </td>
          <td>(</td>
          <td class="paramtype"><a class="el" href="classOpenMS_1_1Param.html">Param</a> &amp;&#160;</td>
          <td class="paramname"><em>param</em></td><td>)</td>
          <td> const</td>
        </tr>
      </table>
  </td>
  <td class="mlabels-right">
<span class="mlabels"><span class="mlabel">virtual</span></span>  </td>
  </tr>
</table>
</div><div class="memdoc">

<p>Checks the (simulation) params passed if they are consistent with the labeling technique. </p>
<dl class="params"><dt>Parameters</dt><dd>
  <table class="params">
    <tr><td class="paramname">param</td><td><a class="el" href="classOpenMS_1_1Param.html" title="Management and storage of parameters / INI files. ">Param</a> object containing the simulation parameters </td></tr>
  </table>
  </dd>
</dl>
<dl class="exception"><dt>Exceptions</dt><dd>
  <table class="exception">
    <tr><td class="paramname"><a class="el" href="classOpenMS_1_1Exception_1_1InvalidParameter.html" title="Exception indicating that an invalid parameter was handed over to an algorithm. ">Exception::InvalidParameter</a></td><td>if the given parameters are not consistent with the labeling technique </td></tr>
  </table>
  </dd>
</dl>

<p>Implements <a class="el" href="classOpenMS_1_1BaseLabeler.html#a5cb471ab0cfdfffa856efa13f48aff92">BaseLabeler</a>.</p>

</div>
</div>
<a class="anchor" id="ab453c939cb92ff888c53f5e6de3b4a69"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
  <tr>
  <td class="mlabels-left">
      <table class="memname">
        <tr>
          <td class="memname">void setUpHook </td>
          <td>(</td>
          <td class="paramtype"><a class="el" href="namespaceOpenMS.html#a5377a8d620ef376a0b1eb2503b847e79">FeatureMapSimVector</a> &amp;&#160;</td>
          <td class="paramname"></td><td>)</td>
          <td></td>
        </tr>
      </table>
  </td>
  <td class="mlabels-right">
<span class="mlabels"><span class="mlabel">virtual</span></span>  </td>
  </tr>
</table>
</div><div class="memdoc">

<p>Hook to prepare the simulation process. </p>

<p>Implements <a class="el" href="classOpenMS_1_1BaseLabeler.html#a0bac562e2949aa9f0b345ab5d9f5d7bd">BaseLabeler</a>.</p>

</div>
</div>
</div><!-- contents -->
<HR style="height:1px; border:none; border-top:1px solid #c0c0c0;">
<TABLE width="100%" border="0">
<TR>
<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:33 using doxygen 1.8.5</font></TD>
</TR>
</TABLE>
</BODY>
</HTML>