1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549
|
<HTML>
<HEAD>
<TITLE>LabelFreeLabeler Class Reference</TITLE>
<LINK HREF="doxygen.css" REL="stylesheet" TYPE="text/css">
<LINK HREF="style_ini.css" REL="stylesheet" TYPE="text/css">
</HEAD>
<BODY BGCOLOR="#FFFFFF">
<A href="index.html">Home</A> ·
<A href="classes.html">Classes</A> ·
<A href="annotated.html">Annotated Classes</A> ·
<A href="modules.html">Modules</A> ·
<A href="functions_func.html">Members</A> ·
<A href="namespaces.html">Namespaces</A> ·
<A href="pages.html">Related Pages</A>
<HR style="height:1px; border:none; border-top:1px solid #c0c0c0;">
<!-- Generated by Doxygen 1.8.5 -->
<div id="nav-path" class="navpath">
<ul>
<li class="navelem"><a class="el" href="namespaceOpenMS.html">OpenMS</a></li><li class="navelem"><a class="el" href="classOpenMS_1_1LabelFreeLabeler.html">LabelFreeLabeler</a></li> </ul>
</div>
</div><!-- top -->
<div class="header">
<div class="summary">
<a href="#pub-methods">Public Member Functions</a> |
<a href="#pub-static-methods">Static Public Member Functions</a> |
<a href="classOpenMS_1_1LabelFreeLabeler-members.html">List of all members</a> </div>
<div class="headertitle">
<div class="title">LabelFreeLabeler Class Reference</div> </div>
</div><!--header-->
<div class="contents">
<p>Abstract base class for all kinds of labeling techniques.
<a href="classOpenMS_1_1LabelFreeLabeler.html#details">More...</a></p>
<p><code>#include <<a class="el" href="LabelFreeLabeler_8h_source.html">OpenMS/SIMULATION/LABELING/LabelFreeLabeler.h</a>></code></p>
<div class="dynheader">
Inheritance diagram for LabelFreeLabeler:</div>
<div class="dyncontent">
<div class="center">
<img src="classOpenMS_1_1LabelFreeLabeler.png" usemap="#LabelFreeLabeler_map" alt=""/>
<map id="LabelFreeLabeler_map" name="LabelFreeLabeler_map">
<area href="classOpenMS_1_1BaseLabeler.html" title="Abstract base class for all kinds of labeling techniques. " alt="BaseLabeler" shape="rect" coords="0,56,133,80"/>
<area href="classOpenMS_1_1DefaultParamHandler.html" title="A base class for all classes handling default parameters. " alt="DefaultParamHandler" shape="rect" coords="0,0,133,24"/>
</map>
</div></div>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:a277c7d4fb2e674953ff62438ee72dcad"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LabelFreeLabeler.html#a277c7d4fb2e674953ff62438ee72dcad">LabelFreeLabeler</a> ()</td></tr>
<tr class="memdesc:a277c7d4fb2e674953ff62438ee72dcad"><td class="mdescLeft"> </td><td class="mdescRight">default constructor <a href="#a277c7d4fb2e674953ff62438ee72dcad">More...</a><br/></td></tr>
<tr class="separator:a277c7d4fb2e674953ff62438ee72dcad"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a1ff4750d316b800e875cd04602b05e26"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LabelFreeLabeler.html#a1ff4750d316b800e875cd04602b05e26">~LabelFreeLabeler</a> ()</td></tr>
<tr class="memdesc:a1ff4750d316b800e875cd04602b05e26"><td class="mdescLeft"> </td><td class="mdescRight">destructor <a href="#a1ff4750d316b800e875cd04602b05e26">More...</a><br/></td></tr>
<tr class="separator:a1ff4750d316b800e875cd04602b05e26"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ad312929bb6a8d1088428f0b61181135c"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LabelFreeLabeler.html#ad312929bb6a8d1088428f0b61181135c">preCheck</a> (<a class="el" href="classOpenMS_1_1Param.html">Param</a> &param) const </td></tr>
<tr class="memdesc:ad312929bb6a8d1088428f0b61181135c"><td class="mdescLeft"> </td><td class="mdescRight">Checks the (simulation) params passed if they are consistent with the labeling technique. <a href="#ad312929bb6a8d1088428f0b61181135c">More...</a><br/></td></tr>
<tr class="separator:ad312929bb6a8d1088428f0b61181135c"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ab453c939cb92ff888c53f5e6de3b4a69"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LabelFreeLabeler.html#ab453c939cb92ff888c53f5e6de3b4a69">setUpHook</a> (<a class="el" href="namespaceOpenMS.html#a5377a8d620ef376a0b1eb2503b847e79">FeatureMapSimVector</a> &)</td></tr>
<tr class="memdesc:ab453c939cb92ff888c53f5e6de3b4a69"><td class="mdescLeft"> </td><td class="mdescRight">Hook to prepare the simulation process. <a href="#ab453c939cb92ff888c53f5e6de3b4a69">More...</a><br/></td></tr>
<tr class="separator:ab453c939cb92ff888c53f5e6de3b4a69"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a4e2bc5baf58b7c0dcf27510809355115"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LabelFreeLabeler.html#a4e2bc5baf58b7c0dcf27510809355115">postDigestHook</a> (<a class="el" href="namespaceOpenMS.html#a5377a8d620ef376a0b1eb2503b847e79">FeatureMapSimVector</a> &)</td></tr>
<tr class="memdesc:a4e2bc5baf58b7c0dcf27510809355115"><td class="mdescLeft"> </td><td class="mdescRight">Labeling between digestion and rt simulation. <a href="#a4e2bc5baf58b7c0dcf27510809355115">More...</a><br/></td></tr>
<tr class="separator:a4e2bc5baf58b7c0dcf27510809355115"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ab14670be6db3b4f96ccb886900106733"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LabelFreeLabeler.html#ab14670be6db3b4f96ccb886900106733">postRTHook</a> (<a class="el" href="namespaceOpenMS.html#a5377a8d620ef376a0b1eb2503b847e79">FeatureMapSimVector</a> &)</td></tr>
<tr class="memdesc:ab14670be6db3b4f96ccb886900106733"><td class="mdescLeft"> </td><td class="mdescRight">Labeling after rt simulation. <a href="#ab14670be6db3b4f96ccb886900106733">More...</a><br/></td></tr>
<tr class="separator:ab14670be6db3b4f96ccb886900106733"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:afb6136a53321815a4ccab0c01642a306"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LabelFreeLabeler.html#afb6136a53321815a4ccab0c01642a306">postDetectabilityHook</a> (<a class="el" href="namespaceOpenMS.html#a5377a8d620ef376a0b1eb2503b847e79">FeatureMapSimVector</a> &)</td></tr>
<tr class="memdesc:afb6136a53321815a4ccab0c01642a306"><td class="mdescLeft"> </td><td class="mdescRight">Labeling after detectability simulation. <a href="#afb6136a53321815a4ccab0c01642a306">More...</a><br/></td></tr>
<tr class="separator:afb6136a53321815a4ccab0c01642a306"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:acf225fd7177ec90269aced5e520aba01"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LabelFreeLabeler.html#acf225fd7177ec90269aced5e520aba01">postIonizationHook</a> (<a class="el" href="namespaceOpenMS.html#a5377a8d620ef376a0b1eb2503b847e79">FeatureMapSimVector</a> &)</td></tr>
<tr class="memdesc:acf225fd7177ec90269aced5e520aba01"><td class="mdescLeft"> </td><td class="mdescRight">Labeling after ionization. <a href="#acf225fd7177ec90269aced5e520aba01">More...</a><br/></td></tr>
<tr class="separator:acf225fd7177ec90269aced5e520aba01"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a4fc3be969e53849728ce52fb0360aaf3"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LabelFreeLabeler.html#a4fc3be969e53849728ce52fb0360aaf3">postRawMSHook</a> (<a class="el" href="namespaceOpenMS.html#a5377a8d620ef376a0b1eb2503b847e79">FeatureMapSimVector</a> &)</td></tr>
<tr class="memdesc:a4fc3be969e53849728ce52fb0360aaf3"><td class="mdescLeft"> </td><td class="mdescRight">Labeling after raw signal generation. <a href="#a4fc3be969e53849728ce52fb0360aaf3">More...</a><br/></td></tr>
<tr class="separator:a4fc3be969e53849728ce52fb0360aaf3"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a2c12d70a72694f6ac28c3150d623cecc"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LabelFreeLabeler.html#a2c12d70a72694f6ac28c3150d623cecc">postRawTandemMSHook</a> (<a class="el" href="namespaceOpenMS.html#a5377a8d620ef376a0b1eb2503b847e79">FeatureMapSimVector</a> &, <a class="el" href="namespaceOpenMS.html#ad8fab082e8d37c2f39ca13d92608d71d">MSSimExperiment</a> &)</td></tr>
<tr class="memdesc:a2c12d70a72694f6ac28c3150d623cecc"><td class="mdescLeft"> </td><td class="mdescRight">Labeling after Tandem MS (e.g. iTRAQ) <a href="#a2c12d70a72694f6ac28c3150d623cecc">More...</a><br/></td></tr>
<tr class="separator:a2c12d70a72694f6ac28c3150d623cecc"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_methods_classOpenMS_1_1BaseLabeler"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classOpenMS_1_1BaseLabeler')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classOpenMS_1_1BaseLabeler.html">BaseLabeler</a></td></tr>
<tr class="memitem:a8d9574a4f5dcf506b57ed1d5ef62eafb inherit pub_methods_classOpenMS_1_1BaseLabeler"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BaseLabeler.html#a8d9574a4f5dcf506b57ed1d5ef62eafb">BaseLabeler</a> ()</td></tr>
<tr class="memdesc:a8d9574a4f5dcf506b57ed1d5ef62eafb inherit pub_methods_classOpenMS_1_1BaseLabeler"><td class="mdescLeft"> </td><td class="mdescRight">constructor <a href="#a8d9574a4f5dcf506b57ed1d5ef62eafb">More...</a><br/></td></tr>
<tr class="separator:a8d9574a4f5dcf506b57ed1d5ef62eafb inherit pub_methods_classOpenMS_1_1BaseLabeler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a5ef109fcb4c3f83e0511f06e2ac3203a inherit pub_methods_classOpenMS_1_1BaseLabeler"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BaseLabeler.html#a5ef109fcb4c3f83e0511f06e2ac3203a">~BaseLabeler</a> ()</td></tr>
<tr class="memdesc:a5ef109fcb4c3f83e0511f06e2ac3203a inherit pub_methods_classOpenMS_1_1BaseLabeler"><td class="mdescLeft"> </td><td class="mdescRight">destructor <a href="#a5ef109fcb4c3f83e0511f06e2ac3203a">More...</a><br/></td></tr>
<tr class="separator:a5ef109fcb4c3f83e0511f06e2ac3203a inherit pub_methods_classOpenMS_1_1BaseLabeler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:abe2fce5095efeecbcd815817430058e0 inherit pub_methods_classOpenMS_1_1BaseLabeler"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="classOpenMS_1_1Param.html">Param</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BaseLabeler.html#abe2fce5095efeecbcd815817430058e0">getDefaultParameters</a> () const </td></tr>
<tr class="memdesc:abe2fce5095efeecbcd815817430058e0 inherit pub_methods_classOpenMS_1_1BaseLabeler"><td class="mdescLeft"> </td><td class="mdescRight">Returns the default parameters. Re-implement. <a href="#abe2fce5095efeecbcd815817430058e0">More...</a><br/></td></tr>
<tr class="separator:abe2fce5095efeecbcd815817430058e0 inherit pub_methods_classOpenMS_1_1BaseLabeler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:abf6ea7bdfe009f1dc969fe767b963322 inherit pub_methods_classOpenMS_1_1BaseLabeler"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BaseLabeler.html#abf6ea7bdfe009f1dc969fe767b963322">setRnd</a> (const <a class="el" href="structOpenMS_1_1SimRandomNumberGenerator.html">SimRandomNumberGenerator</a> &rng)</td></tr>
<tr class="memdesc:abf6ea7bdfe009f1dc969fe767b963322 inherit pub_methods_classOpenMS_1_1BaseLabeler"><td class="mdescLeft"> </td><td class="mdescRight">Set the random number generator. <a href="#abf6ea7bdfe009f1dc969fe767b963322">More...</a><br/></td></tr>
<tr class="separator:abf6ea7bdfe009f1dc969fe767b963322 inherit pub_methods_classOpenMS_1_1BaseLabeler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a90aed6cc7a020052c897817c63c2a3eb inherit pub_methods_classOpenMS_1_1BaseLabeler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BaseLabeler.html#a90aed6cc7a020052c897817c63c2a3eb">getConsensus</a> ()</td></tr>
<tr class="separator:a90aed6cc7a020052c897817c63c2a3eb inherit pub_methods_classOpenMS_1_1BaseLabeler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a95044aa92ba3e9d7f72ff5b3acd0b2a0 inherit pub_methods_classOpenMS_1_1BaseLabeler"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1String.html">String</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BaseLabeler.html#a95044aa92ba3e9d7f72ff5b3acd0b2a0">getDescription</a> () const </td></tr>
<tr class="memdesc:a95044aa92ba3e9d7f72ff5b3acd0b2a0 inherit pub_methods_classOpenMS_1_1BaseLabeler"><td class="mdescLeft"> </td><td class="mdescRight">Get short description of the labeler (e.g., channels used) <a href="#a95044aa92ba3e9d7f72ff5b3acd0b2a0">More...</a><br/></td></tr>
<tr class="separator:a95044aa92ba3e9d7f72ff5b3acd0b2a0 inherit pub_methods_classOpenMS_1_1BaseLabeler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a3f75d542eb488ecd8650b14673d16dd2 inherit pub_methods_classOpenMS_1_1BaseLabeler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BaseLabeler.html#a3f75d542eb488ecd8650b14673d16dd2">getChannelIntensityName</a> (const <a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> channel_index) const </td></tr>
<tr class="memdesc:a3f75d542eb488ecd8650b14673d16dd2 inherit pub_methods_classOpenMS_1_1BaseLabeler"><td class="mdescLeft"> </td><td class="mdescRight">to ensure standardized meta value names across labelers for channel intensity <a href="#a3f75d542eb488ecd8650b14673d16dd2">More...</a><br/></td></tr>
<tr class="separator:a3f75d542eb488ecd8650b14673d16dd2 inherit pub_methods_classOpenMS_1_1BaseLabeler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_methods_classOpenMS_1_1DefaultParamHandler"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classOpenMS_1_1DefaultParamHandler')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td></tr>
<tr class="memitem:afb6802fda161cb0c1a4a05597f94aecc inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#afb6802fda161cb0c1a4a05597f94aecc">DefaultParamHandler</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &name)</td></tr>
<tr class="memdesc:afb6802fda161cb0c1a4a05597f94aecc inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Constructor with name that is displayed in error messages. <a href="#afb6802fda161cb0c1a4a05597f94aecc">More...</a><br/></td></tr>
<tr class="separator:afb6802fda161cb0c1a4a05597f94aecc inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a954da7eef3cfddda446574eaadd20abb inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a954da7eef3cfddda446574eaadd20abb">DefaultParamHandler</a> (const <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &rhs)</td></tr>
<tr class="memdesc:a954da7eef3cfddda446574eaadd20abb inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Copy constructor. <a href="#a954da7eef3cfddda446574eaadd20abb">More...</a><br/></td></tr>
<tr class="separator:a954da7eef3cfddda446574eaadd20abb inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a11e9d6dd34fe8860874aa8abe0ec121b inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a11e9d6dd34fe8860874aa8abe0ec121b">~DefaultParamHandler</a> ()</td></tr>
<tr class="memdesc:a11e9d6dd34fe8860874aa8abe0ec121b inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Destructor. <a href="#a11e9d6dd34fe8860874aa8abe0ec121b">More...</a><br/></td></tr>
<tr class="separator:a11e9d6dd34fe8860874aa8abe0ec121b inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae6b6d68036a573a44f6609460ba2dfb6 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ae6b6d68036a573a44f6609460ba2dfb6">operator=</a> (const <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &rhs)</td></tr>
<tr class="memdesc:ae6b6d68036a573a44f6609460ba2dfb6 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Assignment operator. <a href="#ae6b6d68036a573a44f6609460ba2dfb6">More...</a><br/></td></tr>
<tr class="separator:ae6b6d68036a573a44f6609460ba2dfb6 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ac435f2dd4d9f9328db83af97129a8d7e inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ac435f2dd4d9f9328db83af97129a8d7e">operator==</a> (const <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &rhs) const </td></tr>
<tr class="memdesc:ac435f2dd4d9f9328db83af97129a8d7e inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Equality operator. <a href="#ac435f2dd4d9f9328db83af97129a8d7e">More...</a><br/></td></tr>
<tr class="separator:ac435f2dd4d9f9328db83af97129a8d7e inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:abc8067511cfc949ae942ea2b08588f81 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#abc8067511cfc949ae942ea2b08588f81">setParameters</a> (const <a class="el" href="classOpenMS_1_1Param.html">Param</a> &param)</td></tr>
<tr class="memdesc:abc8067511cfc949ae942ea2b08588f81 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Sets the parameters. <a href="#abc8067511cfc949ae942ea2b08588f81">More...</a><br/></td></tr>
<tr class="separator:abc8067511cfc949ae942ea2b08588f81 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a7f6aab5a7dfbdd1c062a4352a29361f3 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1Param.html">Param</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a7f6aab5a7dfbdd1c062a4352a29361f3">getParameters</a> () const </td></tr>
<tr class="memdesc:a7f6aab5a7dfbdd1c062a4352a29361f3 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Non-mutable access to the parameters. <a href="#a7f6aab5a7dfbdd1c062a4352a29361f3">More...</a><br/></td></tr>
<tr class="separator:a7f6aab5a7dfbdd1c062a4352a29361f3 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a02f02fa9832ca3e8d47c575a39803a2a inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1Param.html">Param</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a02f02fa9832ca3e8d47c575a39803a2a">getDefaults</a> () const </td></tr>
<tr class="memdesc:a02f02fa9832ca3e8d47c575a39803a2a inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Non-mutable access to the default parameters. <a href="#a02f02fa9832ca3e8d47c575a39803a2a">More...</a><br/></td></tr>
<tr class="separator:a02f02fa9832ca3e8d47c575a39803a2a inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aaee0f2845288173de9f6ad47e6ad31d5 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1String.html">String</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#aaee0f2845288173de9f6ad47e6ad31d5">getName</a> () const </td></tr>
<tr class="memdesc:aaee0f2845288173de9f6ad47e6ad31d5 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Non-mutable access to the name. <a href="#aaee0f2845288173de9f6ad47e6ad31d5">More...</a><br/></td></tr>
<tr class="separator:aaee0f2845288173de9f6ad47e6ad31d5 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a77d37f2e1c12e8bd33ea0e660a89e927 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a77d37f2e1c12e8bd33ea0e660a89e927">setName</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &name)</td></tr>
<tr class="memdesc:a77d37f2e1c12e8bd33ea0e660a89e927 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Mutable access to the name. <a href="#a77d37f2e1c12e8bd33ea0e660a89e927">More...</a><br/></td></tr>
<tr class="separator:a77d37f2e1c12e8bd33ea0e660a89e927 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a768d4a2093627a2f34728656a9721bdf inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const std::vector< <a class="el" href="classOpenMS_1_1String.html">String</a> > & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a768d4a2093627a2f34728656a9721bdf">getSubsections</a> () const </td></tr>
<tr class="memdesc:a768d4a2093627a2f34728656a9721bdf inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Non-mutable access to the registered subsections. <a href="#a768d4a2093627a2f34728656a9721bdf">More...</a><br/></td></tr>
<tr class="separator:a768d4a2093627a2f34728656a9721bdf inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-static-methods"></a>
Static Public Member Functions</h2></td></tr>
<tr class="memitem:a4de43939ecee328ea4cd203a39fb3dc0"><td class="memItemLeft" align="right" valign="top">static <a class="el" href="classOpenMS_1_1BaseLabeler.html">BaseLabeler</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LabelFreeLabeler.html#a4de43939ecee328ea4cd203a39fb3dc0">create</a> ()</td></tr>
<tr class="memdesc:a4de43939ecee328ea4cd203a39fb3dc0"><td class="mdescLeft"> </td><td class="mdescRight">create new <a class="el" href="classOpenMS_1_1GaussModel.html" title="Normal distribution approximated using linear interpolation. ">GaussModel</a> object (needed by <a class="el" href="classOpenMS_1_1Factory.html" title="Returns FactoryProduct* based on the name of the desired concrete FactoryProduct. ...">Factory</a>) <a href="#a4de43939ecee328ea4cd203a39fb3dc0">More...</a><br/></td></tr>
<tr class="separator:a4de43939ecee328ea4cd203a39fb3dc0"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:af73fd15708e50e77665070023a09cc87"><td class="memItemLeft" align="right" valign="top">static const <a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LabelFreeLabeler.html#af73fd15708e50e77665070023a09cc87">getProductName</a> ()</td></tr>
<tr class="memdesc:af73fd15708e50e77665070023a09cc87"><td class="mdescLeft"> </td><td class="mdescRight">name of the model (needed by <a class="el" href="classOpenMS_1_1Factory.html" title="Returns FactoryProduct* based on the name of the desired concrete FactoryProduct. ...">Factory</a>) <a href="#af73fd15708e50e77665070023a09cc87">More...</a><br/></td></tr>
<tr class="separator:af73fd15708e50e77665070023a09cc87"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_static_methods_classOpenMS_1_1BaseLabeler"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classOpenMS_1_1BaseLabeler')"><img src="closed.png" alt="-"/> Static Public Member Functions inherited from <a class="el" href="classOpenMS_1_1BaseLabeler.html">BaseLabeler</a></td></tr>
<tr class="memitem:a0619c54ebc0b33a02eb71f942bb00111 inherit pub_static_methods_classOpenMS_1_1BaseLabeler"><td class="memItemLeft" align="right" valign="top">static void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BaseLabeler.html#a0619c54ebc0b33a02eb71f942bb00111">registerChildren</a> ()</td></tr>
<tr class="memdesc:a0619c54ebc0b33a02eb71f942bb00111 inherit pub_static_methods_classOpenMS_1_1BaseLabeler"><td class="mdescLeft"> </td><td class="mdescRight">register all derived classes here (implemented in file <a class="el" href="BaseLabeler__impl_8h.html">BaseLabeler_impl.h</a>) <a href="#a0619c54ebc0b33a02eb71f942bb00111">More...</a><br/></td></tr>
<tr class="separator:a0619c54ebc0b33a02eb71f942bb00111 inherit pub_static_methods_classOpenMS_1_1BaseLabeler"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="inherited"></a>
Additional Inherited Members</h2></td></tr>
<tr class="inherit_header pro_methods_classOpenMS_1_1BaseLabeler"><td colspan="2" onclick="javascript:toggleInherit('pro_methods_classOpenMS_1_1BaseLabeler')"><img src="closed.png" alt="-"/> Protected Member Functions inherited from <a class="el" href="classOpenMS_1_1BaseLabeler.html">BaseLabeler</a></td></tr>
<tr class="memitem:a7d06bf207cf974a9c8727c6f8533f129 inherit pro_methods_classOpenMS_1_1BaseLabeler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespaceOpenMS.html#a9396dc872898d760f035465bc56585d8">FeatureMapSim</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BaseLabeler.html#a7d06bf207cf974a9c8727c6f8533f129">mergeProteinIdentificationsMaps_</a> (const <a class="el" href="namespaceOpenMS.html#a5377a8d620ef376a0b1eb2503b847e79">FeatureMapSimVector</a> &maps)</td></tr>
<tr class="memdesc:a7d06bf207cf974a9c8727c6f8533f129 inherit pro_methods_classOpenMS_1_1BaseLabeler"><td class="mdescLeft"> </td><td class="mdescRight">Creates an empty <a class="el" href="classOpenMS_1_1FeatureMap.html" title="A container for features. ">FeatureMap</a> with the merged ProteinIdentifications from all FeatureMaps contained in <code>maps</code>. <a href="#a7d06bf207cf974a9c8727c6f8533f129">More...</a><br/></td></tr>
<tr class="separator:a7d06bf207cf974a9c8727c6f8533f129 inherit pro_methods_classOpenMS_1_1BaseLabeler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a29c8755364e4efeb0df7ccbeaf3a3a9d inherit pro_methods_classOpenMS_1_1BaseLabeler"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BaseLabeler.html#a29c8755364e4efeb0df7ccbeaf3a3a9d">mergeProteinAccessions_</a> (<a class="el" href="classOpenMS_1_1Feature.html">Feature</a> &target, const <a class="el" href="classOpenMS_1_1Feature.html">Feature</a> &source) const </td></tr>
<tr class="memdesc:a29c8755364e4efeb0df7ccbeaf3a3a9d inherit pro_methods_classOpenMS_1_1BaseLabeler"><td class="mdescLeft"> </td><td class="mdescRight">join all protein references of two features <a href="#a29c8755364e4efeb0df7ccbeaf3a3a9d">More...</a><br/></td></tr>
<tr class="separator:a29c8755364e4efeb0df7ccbeaf3a3a9d inherit pro_methods_classOpenMS_1_1BaseLabeler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ad50a70450d9c1a0f822a34250057f385 inherit pro_methods_classOpenMS_1_1BaseLabeler"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BaseLabeler.html#ad50a70450d9c1a0f822a34250057f385">recomputeConsensus_</a> (const <a class="el" href="namespaceOpenMS.html#a9396dc872898d760f035465bc56585d8">FeatureMapSim</a> &simulated_features)</td></tr>
<tr class="memdesc:ad50a70450d9c1a0f822a34250057f385 inherit pro_methods_classOpenMS_1_1BaseLabeler"><td class="mdescLeft"> </td><td class="mdescRight">Based on the stored consensus recompute the associations for the passed features, assuming that the features where derived from the features stored in the consensus. <a href="#ad50a70450d9c1a0f822a34250057f385">More...</a><br/></td></tr>
<tr class="separator:ad50a70450d9c1a0f822a34250057f385 inherit pro_methods_classOpenMS_1_1BaseLabeler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pro_methods_classOpenMS_1_1DefaultParamHandler"><td colspan="2" onclick="javascript:toggleInherit('pro_methods_classOpenMS_1_1DefaultParamHandler')"><img src="closed.png" alt="-"/> Protected Member Functions inherited from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td></tr>
<tr class="memitem:a776f7572fc4f466e9527ca233471920d inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a776f7572fc4f466e9527ca233471920d">updateMembers_</a> ()</td></tr>
<tr class="memdesc:a776f7572fc4f466e9527ca233471920d inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">This method is used to update extra member variables at the end of the <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#abc8067511cfc949ae942ea2b08588f81" title="Sets the parameters. ">setParameters()</a> method. <a href="#a776f7572fc4f466e9527ca233471920d">More...</a><br/></td></tr>
<tr class="separator:a776f7572fc4f466e9527ca233471920d inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a2802c591e6d7fd3fd9cc35f5e875d0ba inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a2802c591e6d7fd3fd9cc35f5e875d0ba">defaultsToParam_</a> ()</td></tr>
<tr class="memdesc:a2802c591e6d7fd3fd9cc35f5e875d0ba inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Updates the parameters after the defaults have been set in the constructor. <a href="#a2802c591e6d7fd3fd9cc35f5e875d0ba">More...</a><br/></td></tr>
<tr class="separator:a2802c591e6d7fd3fd9cc35f5e875d0ba inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pro_attribs_classOpenMS_1_1BaseLabeler"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classOpenMS_1_1BaseLabeler')"><img src="closed.png" alt="-"/> Protected Attributes inherited from <a class="el" href="classOpenMS_1_1BaseLabeler.html">BaseLabeler</a></td></tr>
<tr class="memitem:a48ce86807bfb996dc261b6b1e4e47e35 inherit pro_attribs_classOpenMS_1_1BaseLabeler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BaseLabeler.html#a48ce86807bfb996dc261b6b1e4e47e35">consensus_</a></td></tr>
<tr class="separator:a48ce86807bfb996dc261b6b1e4e47e35 inherit pro_attribs_classOpenMS_1_1BaseLabeler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:acf6ab009189a770808e644baed4a2c6e inherit pro_attribs_classOpenMS_1_1BaseLabeler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structOpenMS_1_1SimRandomNumberGenerator.html">SimRandomNumberGenerator</a> const * </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BaseLabeler.html#acf6ab009189a770808e644baed4a2c6e">rng_</a></td></tr>
<tr class="separator:acf6ab009189a770808e644baed4a2c6e inherit pro_attribs_classOpenMS_1_1BaseLabeler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a988e1f35dc9b477bbf287ecf7b8cee82 inherit pro_attribs_classOpenMS_1_1BaseLabeler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BaseLabeler.html#a988e1f35dc9b477bbf287ecf7b8cee82">channel_description_</a></td></tr>
<tr class="separator:a988e1f35dc9b477bbf287ecf7b8cee82 inherit pro_attribs_classOpenMS_1_1BaseLabeler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pro_attribs_classOpenMS_1_1DefaultParamHandler"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classOpenMS_1_1DefaultParamHandler')"><img src="closed.png" alt="-"/> Protected Attributes inherited from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td></tr>
<tr class="memitem:a28c73e623c63a4fe3bfceb1ae8274f39 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Param.html">Param</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a28c73e623c63a4fe3bfceb1ae8274f39">param_</a></td></tr>
<tr class="memdesc:a28c73e623c63a4fe3bfceb1ae8274f39 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Container for current parameters. <a href="#a28c73e623c63a4fe3bfceb1ae8274f39">More...</a><br/></td></tr>
<tr class="separator:a28c73e623c63a4fe3bfceb1ae8274f39 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a761b1937850c141d0c6fff0e4d633a04 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Param.html">Param</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a761b1937850c141d0c6fff0e4d633a04">defaults_</a></td></tr>
<tr class="memdesc:a761b1937850c141d0c6fff0e4d633a04 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Container for default parameters. This member should be filled in the constructor of derived classes! <a href="#a761b1937850c141d0c6fff0e4d633a04">More...</a><br/></td></tr>
<tr class="separator:a761b1937850c141d0c6fff0e4d633a04 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ac4b0e20bc59c7a5afe016c69067e428c inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">std::vector< <a class="el" href="classOpenMS_1_1String.html">String</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ac4b0e20bc59c7a5afe016c69067e428c">subsections_</a></td></tr>
<tr class="memdesc:ac4b0e20bc59c7a5afe016c69067e428c inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Container for registered subsections. This member should be filled in the constructor of derived classes! <a href="#ac4b0e20bc59c7a5afe016c69067e428c">More...</a><br/></td></tr>
<tr class="separator:ac4b0e20bc59c7a5afe016c69067e428c inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a5a51f3f150b09068256195e934339a19 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a5a51f3f150b09068256195e934339a19">error_name_</a></td></tr>
<tr class="memdesc:a5a51f3f150b09068256195e934339a19 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Name that is displayed in error messages during the parameter checking. <a href="#a5a51f3f150b09068256195e934339a19">More...</a><br/></td></tr>
<tr class="separator:a5a51f3f150b09068256195e934339a19 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a7c3b265b697a57615da5cd3274780efd inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a7c3b265b697a57615da5cd3274780efd">check_defaults_</a></td></tr>
<tr class="memdesc:a7c3b265b697a57615da5cd3274780efd inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">If this member is set to false no checking if parameters in done;. <a href="#a7c3b265b697a57615da5cd3274780efd">More...</a><br/></td></tr>
<tr class="separator:a7c3b265b697a57615da5cd3274780efd inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aba444910e4fccb93f91bf7ab135f508a inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#aba444910e4fccb93f91bf7ab135f508a">warn_empty_defaults_</a></td></tr>
<tr class="memdesc:aba444910e4fccb93f91bf7ab135f508a inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">If this member is set to false no warning is emitted when defaults are empty;. <a href="#aba444910e4fccb93f91bf7ab135f508a">More...</a><br/></td></tr>
<tr class="separator:aba444910e4fccb93f91bf7ab135f508a inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
</table>
<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>Abstract base class for all kinds of labeling techniques. </p>
</div><h2 class="groupheader">Constructor & Destructor Documentation</h2>
<a class="anchor" id="a277c7d4fb2e674953ff62438ee72dcad"></a>
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname"><a class="el" href="classOpenMS_1_1LabelFreeLabeler.html">LabelFreeLabeler</a> </td>
<td>(</td>
<td class="paramname"></td><td>)</td>
<td></td>
</tr>
</table>
</div><div class="memdoc">
<p>default constructor </p>
</div>
</div>
<a class="anchor" id="a1ff4750d316b800e875cd04602b05e26"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">virtual ~<a class="el" href="classOpenMS_1_1LabelFreeLabeler.html">LabelFreeLabeler</a> </td>
<td>(</td>
<td class="paramname"></td><td>)</td>
<td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">virtual</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>destructor </p>
</div>
</div>
<h2 class="groupheader">Member Function Documentation</h2>
<a class="anchor" id="a4de43939ecee328ea4cd203a39fb3dc0"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">static <a class="el" href="classOpenMS_1_1BaseLabeler.html">BaseLabeler</a>* create </td>
<td>(</td>
<td class="paramname"></td><td>)</td>
<td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">static</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>create new <a class="el" href="classOpenMS_1_1GaussModel.html" title="Normal distribution approximated using linear interpolation. ">GaussModel</a> object (needed by <a class="el" href="classOpenMS_1_1Factory.html" title="Returns FactoryProduct* based on the name of the desired concrete FactoryProduct. ...">Factory</a>) </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1BaseLabeler.html#a0619c54ebc0b33a02eb71f942bb00111">BaseLabeler::registerChildren()</a>.</p>
</div>
</div>
<a class="anchor" id="af73fd15708e50e77665070023a09cc87"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">static const <a class="el" href="classOpenMS_1_1String.html">String</a> getProductName </td>
<td>(</td>
<td class="paramname"></td><td>)</td>
<td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">static</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>name of the model (needed by <a class="el" href="classOpenMS_1_1Factory.html" title="Returns FactoryProduct* based on the name of the desired concrete FactoryProduct. ...">Factory</a>) </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1BaseLabeler.html#a0619c54ebc0b33a02eb71f942bb00111">BaseLabeler::registerChildren()</a>.</p>
</div>
</div>
<a class="anchor" id="afb6136a53321815a4ccab0c01642a306"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">void postDetectabilityHook </td>
<td>(</td>
<td class="paramtype"><a class="el" href="namespaceOpenMS.html#a5377a8d620ef376a0b1eb2503b847e79">FeatureMapSimVector</a> & </td>
<td class="paramname"></td><td>)</td>
<td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">virtual</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>Labeling after detectability simulation. </p>
<p>Implements <a class="el" href="classOpenMS_1_1BaseLabeler.html#a3a4baf4c04e0c6bad29c5f2958d9c094">BaseLabeler</a>.</p>
</div>
</div>
<a class="anchor" id="a4e2bc5baf58b7c0dcf27510809355115"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">void postDigestHook </td>
<td>(</td>
<td class="paramtype"><a class="el" href="namespaceOpenMS.html#a5377a8d620ef376a0b1eb2503b847e79">FeatureMapSimVector</a> & </td>
<td class="paramname"></td><td>)</td>
<td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">virtual</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>Labeling between digestion and rt simulation. </p>
<p>Implements <a class="el" href="classOpenMS_1_1BaseLabeler.html#afa4bac3e0bd3d42fc1dca1a066c7c46e">BaseLabeler</a>.</p>
</div>
</div>
<a class="anchor" id="acf225fd7177ec90269aced5e520aba01"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">void postIonizationHook </td>
<td>(</td>
<td class="paramtype"><a class="el" href="namespaceOpenMS.html#a5377a8d620ef376a0b1eb2503b847e79">FeatureMapSimVector</a> & </td>
<td class="paramname"></td><td>)</td>
<td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">virtual</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>Labeling after ionization. </p>
<p>Implements <a class="el" href="classOpenMS_1_1BaseLabeler.html#a5e4bdc27fbdcfd37de0eff271a0a1778">BaseLabeler</a>.</p>
</div>
</div>
<a class="anchor" id="a4fc3be969e53849728ce52fb0360aaf3"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">void postRawMSHook </td>
<td>(</td>
<td class="paramtype"><a class="el" href="namespaceOpenMS.html#a5377a8d620ef376a0b1eb2503b847e79">FeatureMapSimVector</a> & </td>
<td class="paramname"></td><td>)</td>
<td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">virtual</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>Labeling after raw signal generation. </p>
<p>Implements <a class="el" href="classOpenMS_1_1BaseLabeler.html#a2a2d3d6ee40ed2050887ecd55e959f37">BaseLabeler</a>.</p>
</div>
</div>
<a class="anchor" id="a2c12d70a72694f6ac28c3150d623cecc"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">void postRawTandemMSHook </td>
<td>(</td>
<td class="paramtype"><a class="el" href="namespaceOpenMS.html#a5377a8d620ef376a0b1eb2503b847e79">FeatureMapSimVector</a> & </td>
<td class="paramname">, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype"><a class="el" href="namespaceOpenMS.html#ad8fab082e8d37c2f39ca13d92608d71d">MSSimExperiment</a> & </td>
<td class="paramname"> </td>
</tr>
<tr>
<td></td>
<td>)</td>
<td></td><td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">virtual</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>Labeling after Tandem MS (e.g. iTRAQ) </p>
<p>Implements <a class="el" href="classOpenMS_1_1BaseLabeler.html#a1d04088b5867c87f8da1cf3cdffd386b">BaseLabeler</a>.</p>
</div>
</div>
<a class="anchor" id="ab14670be6db3b4f96ccb886900106733"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">void postRTHook </td>
<td>(</td>
<td class="paramtype"><a class="el" href="namespaceOpenMS.html#a5377a8d620ef376a0b1eb2503b847e79">FeatureMapSimVector</a> & </td>
<td class="paramname"></td><td>)</td>
<td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">virtual</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>Labeling after rt simulation. </p>
<p>Implements <a class="el" href="classOpenMS_1_1BaseLabeler.html#a29264a786af342480b2fba9007bfa6a0">BaseLabeler</a>.</p>
</div>
</div>
<a class="anchor" id="ad312929bb6a8d1088428f0b61181135c"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">void preCheck </td>
<td>(</td>
<td class="paramtype"><a class="el" href="classOpenMS_1_1Param.html">Param</a> & </td>
<td class="paramname"><em>param</em></td><td>)</td>
<td> const</td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">virtual</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>Checks the (simulation) params passed if they are consistent with the labeling technique. </p>
<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">param</td><td><a class="el" href="classOpenMS_1_1Param.html" title="Management and storage of parameters / INI files. ">Param</a> object containing the simulation parameters </td></tr>
</table>
</dd>
</dl>
<dl class="exception"><dt>Exceptions</dt><dd>
<table class="exception">
<tr><td class="paramname"><a class="el" href="classOpenMS_1_1Exception_1_1InvalidParameter.html" title="Exception indicating that an invalid parameter was handed over to an algorithm. ">Exception::InvalidParameter</a></td><td>if the given parameters are not consistent with the labeling technique </td></tr>
</table>
</dd>
</dl>
<p>Implements <a class="el" href="classOpenMS_1_1BaseLabeler.html#a5cb471ab0cfdfffa856efa13f48aff92">BaseLabeler</a>.</p>
</div>
</div>
<a class="anchor" id="ab453c939cb92ff888c53f5e6de3b4a69"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">void setUpHook </td>
<td>(</td>
<td class="paramtype"><a class="el" href="namespaceOpenMS.html#a5377a8d620ef376a0b1eb2503b847e79">FeatureMapSimVector</a> & </td>
<td class="paramname"></td><td>)</td>
<td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">virtual</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>Hook to prepare the simulation process. </p>
<p>Implements <a class="el" href="classOpenMS_1_1BaseLabeler.html#a0bac562e2949aa9f0b345ab5d9f5d7bd">BaseLabeler</a>.</p>
</div>
</div>
</div><!-- contents -->
<HR style="height:1px; border:none; border-top:1px solid #c0c0c0;">
<TABLE width="100%" border="0">
<TR>
<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:33 using doxygen 1.8.5</font></TD>
</TR>
</TABLE>
</BODY>
</HTML>
|