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<li class="navelem"><a class="el" href="namespaceOpenMS.html">OpenMS</a></li><li class="navelem"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html">LibSVMEncoder</a></li>  </ul>
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<div class="title">LibSVMEncoder Member List</div>  </div>
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<p>This is the complete list of members for <a class="el" href="classOpenMS_1_1LibSVMEncoder.html">LibSVMEncoder</a>, including all inherited members.</p>
<table class="directory">
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html#a070d7b3d971b30a61bcc2cbe5db9c9ed">cmpOligos_</a>(std::pair&lt; Int, DoubleReal &gt; a, std::pair&lt; Int, DoubleReal &gt; b)</td><td class="entry"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html">LibSVMEncoder</a></td><td class="entry"><span class="mlabel">private</span><span class="mlabel">static</span></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html#a94f559ce6231df530c5f7627415cd0c1">destroyProblem</a>(svm_problem *problem)</td><td class="entry"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html">LibSVMEncoder</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html#a6a55c55c9a1b6bb89a28ad2d01f6c282">encodeCompositionVector</a>(const String &amp;sequence, std::vector&lt; std::pair&lt; Int, DoubleReal &gt; &gt; &amp;encoded_vector, const String &amp;allowed_characters=&quot;ACDEFGHIKLMNPQRSTVWY&quot;)</td><td class="entry"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html">LibSVMEncoder</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html#ae7616d10bd510a300474854327595f4b">encodeCompositionVectors</a>(const std::vector&lt; String &gt; &amp;sequences, const String &amp;allowed_characters, std::vector&lt; std::vector&lt; std::pair&lt; Int, DoubleReal &gt; &gt; &gt; &amp;composition_vectors)</td><td class="entry"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html">LibSVMEncoder</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html#a2ea48476fb89be562d3034a405c33995">encodeLibSVMProblem</a>(const std::vector&lt; svm_node * &gt; &amp;vectors, std::vector&lt; DoubleReal &gt; &amp;labels)</td><td class="entry"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html">LibSVMEncoder</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html#af88c607a510497211033ebe3bc9e3f32">encodeLibSVMProblemWithCompositionAndLengthVectors</a>(const std::vector&lt; String &gt; &amp;sequences, std::vector&lt; DoubleReal &gt; &amp;labels, const String &amp;allowed_characters, UInt maximum_sequence_length)</td><td class="entry"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html">LibSVMEncoder</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html#a934185e9bc3cf943fd6ca10d84c3a50e">encodeLibSVMProblemWithCompositionLengthAndWeightVectors</a>(const std::vector&lt; String &gt; &amp;sequences, std::vector&lt; DoubleReal &gt; &amp;labels, const String &amp;allowed_characters)</td><td class="entry"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html">LibSVMEncoder</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html#a06f713b79fd3fc8854aa4d3161379d8f">encodeLibSVMProblemWithCompositionVectors</a>(const std::vector&lt; String &gt; &amp;sequences, std::vector&lt; DoubleReal &gt; &amp;labels, const String &amp;allowed_characters)</td><td class="entry"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html">LibSVMEncoder</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html#af7de985006b4a0673bd1942fd282f3c8">encodeLibSVMProblemWithOligoBorderVectors</a>(const std::vector&lt; String &gt; &amp;sequences, std::vector&lt; DoubleReal &gt; &amp;labels, UInt k_mer_length, const String &amp;allowed_characters, UInt border_length, bool strict=false, bool unpaired=false, bool length_encoding=false)</td><td class="entry"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html">LibSVMEncoder</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html#adc354fac28608905af89d54965ac9831">encodeLibSVMVector</a>(const std::vector&lt; std::pair&lt; Int, DoubleReal &gt; &gt; &amp;feature_vector)</td><td class="entry"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html">LibSVMEncoder</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html#a6928bd2e1b05f88227ec2a8ea6dc2d66">encodeLibSVMVectors</a>(const std::vector&lt; std::vector&lt; std::pair&lt; Int, DoubleReal &gt; &gt; &gt; &amp;feature_vectors, std::vector&lt; svm_node * &gt; &amp;libsvm_vectors)</td><td class="entry"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html">LibSVMEncoder</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html#ad7203656eb6d92da3a2552064ee05831">encodeOligo</a>(const AASequence &amp;sequence, UInt k_mer_length, const String &amp;allowed_characters, std::vector&lt; std::pair&lt; Int, DoubleReal &gt; &gt; &amp;values, bool is_right_border=false)</td><td class="entry"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html">LibSVMEncoder</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html#a14d0f15718f7ce8574d28b3155b700cf">encodeOligoBorders</a>(String sequence, UInt k_mer_length, const String &amp;allowed_characters, UInt border_length, std::vector&lt; std::pair&lt; Int, DoubleReal &gt; &gt; &amp;libsvm_vector, bool strict=false, bool unpaired=false, bool length_encoding=false)</td><td class="entry"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html">LibSVMEncoder</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html#a3bdbe58670b5a2ba93b3962a5c419623">encodeProblemWithOligoBorderVectors</a>(const std::vector&lt; AASequence &gt; &amp;sequences, UInt k_mer_length, const String &amp;allowed_characters, UInt border_length, std::vector&lt; std::vector&lt; std::pair&lt; Int, DoubleReal &gt; &gt; &gt; &amp;vectors)</td><td class="entry"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html">LibSVMEncoder</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html#a8fd830149e5e33446b65d0f988c49e2f">LibSVMEncoder</a>()</td><td class="entry"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html">LibSVMEncoder</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html#a9c1ad079376ba0f55d414e1c584e4569">libSVMVectorsToString</a>(svm_problem *vector, String &amp;output)</td><td class="entry"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html">LibSVMEncoder</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html#ae755e074b7667b38b2e173c46d7791c8">libSVMVectorToString</a>(svm_node *vector, String &amp;output)</td><td class="entry"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html">LibSVMEncoder</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html#a022ef62449e1ef4547d07d3f1bdb0596">loadLibSVMProblem</a>(const String &amp;filename)</td><td class="entry"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html">LibSVMEncoder</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html#ab9a514a9fd405b986cd85ef4d3b9ea54">storeLibSVMProblem</a>(const String &amp;filename, const svm_problem *problem) const </td><td class="entry"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html">LibSVMEncoder</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html#a316f01d46fc8b58acf85fbe0d92ebeb9">~LibSVMEncoder</a>()</td><td class="entry"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html">LibSVMEncoder</a></td><td class="entry"></td></tr>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:30 using doxygen 1.8.5</font></TD>
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