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<HTML>
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<TITLE>MapAlignmentEvaluationAlgorithmRecall Class Reference</TITLE>
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<p>Caap evaluation algorithm to obtain a recall value.  
 <a href="classOpenMS_1_1MapAlignmentEvaluationAlgorithmRecall.html#details">More...</a></p>

<p><code>#include &lt;<a class="el" href="MapAlignmentEvaluationAlgorithmRecall_8h_source.html">OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithmRecall.h</a>&gt;</code></p>
<div class="dynheader">
Inheritance diagram for MapAlignmentEvaluationAlgorithmRecall:</div>
<div class="dyncontent">
 <div class="center">
  <img src="classOpenMS_1_1MapAlignmentEvaluationAlgorithmRecall.png" usemap="#MapAlignmentEvaluationAlgorithmRecall_map" alt=""/>
  <map id="MapAlignmentEvaluationAlgorithmRecall_map" name="MapAlignmentEvaluationAlgorithmRecall_map">
<area href="classOpenMS_1_1MapAlignmentEvaluationAlgorithm.html" title="Base class for all Caap evaluation algorithms. " alt="MapAlignmentEvaluationAlgorithm" shape="rect" coords="0,0,239,24"/>
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<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:a27d94e5d108b5c697da75953dc1e6a9d"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MapAlignmentEvaluationAlgorithmRecall.html#a27d94e5d108b5c697da75953dc1e6a9d">MapAlignmentEvaluationAlgorithmRecall</a> ()</td></tr>
<tr class="memdesc:a27d94e5d108b5c697da75953dc1e6a9d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Default constructor.  <a href="#a27d94e5d108b5c697da75953dc1e6a9d">More...</a><br/></td></tr>
<tr class="separator:a27d94e5d108b5c697da75953dc1e6a9d"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a407e93ed858e6199ad831e6a281069ca"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MapAlignmentEvaluationAlgorithmRecall.html#a407e93ed858e6199ad831e6a281069ca">~MapAlignmentEvaluationAlgorithmRecall</a> ()</td></tr>
<tr class="memdesc:a407e93ed858e6199ad831e6a281069ca"><td class="mdescLeft">&#160;</td><td class="mdescRight">Destructor.  <a href="#a407e93ed858e6199ad831e6a281069ca">More...</a><br/></td></tr>
<tr class="separator:a407e93ed858e6199ad831e6a281069ca"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a04f0dd3d4175f3f37413fddefa3315f1"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MapAlignmentEvaluationAlgorithmRecall.html#a04f0dd3d4175f3f37413fddefa3315f1">evaluate</a> (const <a class="el" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> &amp;consensus_map_in, const <a class="el" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> &amp;consensus_map_gt, const <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> &amp;rt_dev, const <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> &amp;mz_dev, const <a class="el" href="classOpenMS_1_1Peak2D.html#a4a8c5b2adc05e9ff96a007385bfe9b47">Peak2D::IntensityType</a> &amp;int_dev, const bool use_charge, <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> &amp;out)</td></tr>
<tr class="memdesc:a04f0dd3d4175f3f37413fddefa3315f1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Applies the algorithm.  <a href="#a04f0dd3d4175f3f37413fddefa3315f1">More...</a><br/></td></tr>
<tr class="separator:a04f0dd3d4175f3f37413fddefa3315f1"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pub_methods_classOpenMS_1_1MapAlignmentEvaluationAlgorithm"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classOpenMS_1_1MapAlignmentEvaluationAlgorithm')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classOpenMS_1_1MapAlignmentEvaluationAlgorithm.html">MapAlignmentEvaluationAlgorithm</a></td></tr>
<tr class="memitem:a3ff45d7c5953b4f1950d17639e9534ab inherit pub_methods_classOpenMS_1_1MapAlignmentEvaluationAlgorithm"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MapAlignmentEvaluationAlgorithm.html#a3ff45d7c5953b4f1950d17639e9534ab">MapAlignmentEvaluationAlgorithm</a> ()</td></tr>
<tr class="memdesc:a3ff45d7c5953b4f1950d17639e9534ab inherit pub_methods_classOpenMS_1_1MapAlignmentEvaluationAlgorithm"><td class="mdescLeft">&#160;</td><td class="mdescRight">Default constructor.  <a href="#a3ff45d7c5953b4f1950d17639e9534ab">More...</a><br/></td></tr>
<tr class="separator:a3ff45d7c5953b4f1950d17639e9534ab inherit pub_methods_classOpenMS_1_1MapAlignmentEvaluationAlgorithm"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ac5c6c9fde1ece5542135447846268c90 inherit pub_methods_classOpenMS_1_1MapAlignmentEvaluationAlgorithm"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MapAlignmentEvaluationAlgorithm.html#ac5c6c9fde1ece5542135447846268c90">~MapAlignmentEvaluationAlgorithm</a> ()</td></tr>
<tr class="memdesc:ac5c6c9fde1ece5542135447846268c90 inherit pub_methods_classOpenMS_1_1MapAlignmentEvaluationAlgorithm"><td class="mdescLeft">&#160;</td><td class="mdescRight">Destructor.  <a href="#ac5c6c9fde1ece5542135447846268c90">More...</a><br/></td></tr>
<tr class="separator:ac5c6c9fde1ece5542135447846268c90 inherit pub_methods_classOpenMS_1_1MapAlignmentEvaluationAlgorithm"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ae6e8c3ab60723fffb3f65998d0c14a44 inherit pub_methods_classOpenMS_1_1MapAlignmentEvaluationAlgorithm"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MapAlignmentEvaluationAlgorithm.html#ae6e8c3ab60723fffb3f65998d0c14a44">isSameHandle</a> (const <a class="el" href="classOpenMS_1_1FeatureHandle.html">FeatureHandle</a> &amp;lhs, const <a class="el" href="classOpenMS_1_1FeatureHandle.html">FeatureHandle</a> &amp;rhs, const <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> &amp;rt_dev, const <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> &amp;mz_dev, const <a class="el" href="classOpenMS_1_1Peak2D.html#a4a8c5b2adc05e9ff96a007385bfe9b47">Peak2D::IntensityType</a> &amp;int_dev, const bool use_charge)</td></tr>
<tr class="memdesc:ae6e8c3ab60723fffb3f65998d0c14a44 inherit pub_methods_classOpenMS_1_1MapAlignmentEvaluationAlgorithm"><td class="mdescLeft">&#160;</td><td class="mdescRight">Decides if two features are the same, based on maximum allowed deviations for retention time, m/z and intensity.  <a href="#ae6e8c3ab60723fffb3f65998d0c14a44">More...</a><br/></td></tr>
<tr class="separator:ae6e8c3ab60723fffb3f65998d0c14a44 inherit pub_methods_classOpenMS_1_1MapAlignmentEvaluationAlgorithm"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-static-methods"></a>
Static Public Member Functions</h2></td></tr>
<tr class="memitem:aad72baefabd847a7376010ca08a462fe"><td class="memItemLeft" align="right" valign="top">static <br class="typebreak"/>
<a class="el" href="classOpenMS_1_1MapAlignmentEvaluationAlgorithm.html">MapAlignmentEvaluationAlgorithm</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MapAlignmentEvaluationAlgorithmRecall.html#aad72baefabd847a7376010ca08a462fe">create</a> ()</td></tr>
<tr class="memdesc:aad72baefabd847a7376010ca08a462fe"><td class="mdescLeft">&#160;</td><td class="mdescRight">Creates a new instance of this class (for <a class="el" href="classOpenMS_1_1Factory.html" title="Returns FactoryProduct* based on the name of the desired concrete FactoryProduct. ...">Factory</a>)  <a href="#aad72baefabd847a7376010ca08a462fe">More...</a><br/></td></tr>
<tr class="separator:aad72baefabd847a7376010ca08a462fe"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a8d4600093afb26cff7d7db82a1837e9f"><td class="memItemLeft" align="right" valign="top">static <a class="el" href="classOpenMS_1_1String.html">String</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MapAlignmentEvaluationAlgorithmRecall.html#a8d4600093afb26cff7d7db82a1837e9f">getProductName</a> ()</td></tr>
<tr class="memdesc:a8d4600093afb26cff7d7db82a1837e9f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns the product name (for the <a class="el" href="classOpenMS_1_1Factory.html" title="Returns FactoryProduct* based on the name of the desired concrete FactoryProduct. ...">Factory</a>)  <a href="#a8d4600093afb26cff7d7db82a1837e9f">More...</a><br/></td></tr>
<tr class="separator:a8d4600093afb26cff7d7db82a1837e9f"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pub_static_methods_classOpenMS_1_1MapAlignmentEvaluationAlgorithm"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classOpenMS_1_1MapAlignmentEvaluationAlgorithm')"><img src="closed.png" alt="-"/>&#160;Static Public Member Functions inherited from <a class="el" href="classOpenMS_1_1MapAlignmentEvaluationAlgorithm.html">MapAlignmentEvaluationAlgorithm</a></td></tr>
<tr class="memitem:a7899dbe105534dc1f81971dd71a26ff0 inherit pub_static_methods_classOpenMS_1_1MapAlignmentEvaluationAlgorithm"><td class="memItemLeft" align="right" valign="top">static void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MapAlignmentEvaluationAlgorithm.html#a7899dbe105534dc1f81971dd71a26ff0">registerChildren</a> ()</td></tr>
<tr class="memdesc:a7899dbe105534dc1f81971dd71a26ff0 inherit pub_static_methods_classOpenMS_1_1MapAlignmentEvaluationAlgorithm"><td class="mdescLeft">&#160;</td><td class="mdescRight">Register all derived classes in this method.  <a href="#a7899dbe105534dc1f81971dd71a26ff0">More...</a><br/></td></tr>
<tr class="separator:a7899dbe105534dc1f81971dd71a26ff0 inherit pub_static_methods_classOpenMS_1_1MapAlignmentEvaluationAlgorithm"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-methods"></a>
Private Member Functions</h2></td></tr>
<tr class="memitem:a78895ac3e74f700e1fdfc46483b45d20"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MapAlignmentEvaluationAlgorithmRecall.html#a78895ac3e74f700e1fdfc46483b45d20">MapAlignmentEvaluationAlgorithmRecall</a> (const <a class="el" href="classOpenMS_1_1MapAlignmentEvaluationAlgorithmRecall.html">MapAlignmentEvaluationAlgorithmRecall</a> &amp;)</td></tr>
<tr class="memdesc:a78895ac3e74f700e1fdfc46483b45d20"><td class="mdescLeft">&#160;</td><td class="mdescRight">Copy constructor intentionally not implemented -&gt; private.  <a href="#a78895ac3e74f700e1fdfc46483b45d20">More...</a><br/></td></tr>
<tr class="separator:a78895ac3e74f700e1fdfc46483b45d20"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a0303caacbea528bfd4ebf75236b57b10"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1MapAlignmentEvaluationAlgorithmRecall.html">MapAlignmentEvaluationAlgorithmRecall</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MapAlignmentEvaluationAlgorithmRecall.html#a0303caacbea528bfd4ebf75236b57b10">operator=</a> (const <a class="el" href="classOpenMS_1_1MapAlignmentEvaluationAlgorithmRecall.html">MapAlignmentEvaluationAlgorithmRecall</a> &amp;)</td></tr>
<tr class="memdesc:a0303caacbea528bfd4ebf75236b57b10"><td class="mdescLeft">&#160;</td><td class="mdescRight">Assignment operator intentionally not implemented -&gt; private.  <a href="#a0303caacbea528bfd4ebf75236b57b10">More...</a><br/></td></tr>
<tr class="separator:a0303caacbea528bfd4ebf75236b57b10"><td class="memSeparator" colspan="2">&#160;</td></tr>
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="inherited"></a>
Additional Inherited Members</h2></td></tr>
<tr class="inherit_header pro_types_classOpenMS_1_1MapAlignmentEvaluationAlgorithm"><td colspan="2" onclick="javascript:toggleInherit('pro_types_classOpenMS_1_1MapAlignmentEvaluationAlgorithm')"><img src="closed.png" alt="-"/>&#160;Protected Types inherited from <a class="el" href="classOpenMS_1_1MapAlignmentEvaluationAlgorithm.html">MapAlignmentEvaluationAlgorithm</a></td></tr>
<tr class="memitem:a2c233ffe5523da73c521648a3b57d0e4 inherit pro_types_classOpenMS_1_1MapAlignmentEvaluationAlgorithm"><td class="memItemLeft" align="right" valign="top">typedef <br class="typebreak"/>
ConsensusFeature::HandleSetType::const_iterator&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MapAlignmentEvaluationAlgorithm.html#a2c233ffe5523da73c521648a3b57d0e4">HandleIterator</a></td></tr>
<tr class="separator:a2c233ffe5523da73c521648a3b57d0e4 inherit pro_types_classOpenMS_1_1MapAlignmentEvaluationAlgorithm"><td class="memSeparator" colspan="2">&#160;</td></tr>
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>Caap evaluation algorithm to obtain a recall value. </p>
<p>It evaluates an input consensus map with respect to a ground truth. </p>
</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
<a class="anchor" id="a27d94e5d108b5c697da75953dc1e6a9d"></a>
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          <td class="memname"><a class="el" href="classOpenMS_1_1MapAlignmentEvaluationAlgorithmRecall.html">MapAlignmentEvaluationAlgorithmRecall</a> </td>
          <td>(</td>
          <td class="paramname"></td><td>)</td>
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<p>Default constructor. </p>

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          <td class="memname">virtual ~<a class="el" href="classOpenMS_1_1MapAlignmentEvaluationAlgorithmRecall.html">MapAlignmentEvaluationAlgorithmRecall</a> </td>
          <td>(</td>
          <td class="paramname"></td><td>)</td>
          <td></td>
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<span class="mlabels"><span class="mlabel">virtual</span></span>  </td>
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<p>Destructor. </p>

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          <td class="memname"><a class="el" href="classOpenMS_1_1MapAlignmentEvaluationAlgorithmRecall.html">MapAlignmentEvaluationAlgorithmRecall</a> </td>
          <td>(</td>
          <td class="paramtype">const <a class="el" href="classOpenMS_1_1MapAlignmentEvaluationAlgorithmRecall.html">MapAlignmentEvaluationAlgorithmRecall</a> &amp;&#160;</td>
          <td class="paramname"></td><td>)</td>
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<p>Copy constructor intentionally not implemented -&gt; private. </p>

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<h2 class="groupheader">Member Function Documentation</h2>
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          <td class="memname">static <a class="el" href="classOpenMS_1_1MapAlignmentEvaluationAlgorithm.html">MapAlignmentEvaluationAlgorithm</a>* create </td>
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<p>Creates a new instance of this class (for <a class="el" href="classOpenMS_1_1Factory.html" title="Returns FactoryProduct* based on the name of the desired concrete FactoryProduct. ...">Factory</a>) </p>

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          <td class="memname">virtual void evaluate </td>
          <td>(</td>
          <td class="paramtype">const <a class="el" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> &amp;&#160;</td>
          <td class="paramname"><em>consensus_map_in</em>, </td>
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          <td class="paramkey"></td>
          <td></td>
          <td class="paramtype">const <a class="el" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> &amp;&#160;</td>
          <td class="paramname"><em>consensus_map_gt</em>, </td>
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          <td class="paramtype">const <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> &amp;&#160;</td>
          <td class="paramname"><em>rt_dev</em>, </td>
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          <td class="paramtype">const <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> &amp;&#160;</td>
          <td class="paramname"><em>mz_dev</em>, </td>
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          <td class="paramtype">const <a class="el" href="classOpenMS_1_1Peak2D.html#a4a8c5b2adc05e9ff96a007385bfe9b47">Peak2D::IntensityType</a> &amp;&#160;</td>
          <td class="paramname"><em>int_dev</em>, </td>
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          <td class="paramname"><em>use_charge</em>, </td>
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          <td class="paramtype"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> &amp;&#160;</td>
          <td class="paramname"><em>out</em>&#160;</td>
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          <td>)</td>
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<p>Applies the algorithm. </p>

<p>Implements <a class="el" href="classOpenMS_1_1MapAlignmentEvaluationAlgorithm.html#a242e005f981c9992d9d8852cf7b7f09f">MapAlignmentEvaluationAlgorithm</a>.</p>

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          <td class="memname">static <a class="el" href="classOpenMS_1_1String.html">String</a> getProductName </td>
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<p>Returns the product name (for the <a class="el" href="classOpenMS_1_1Factory.html" title="Returns FactoryProduct* based on the name of the desired concrete FactoryProduct. ...">Factory</a>) </p>

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          <td class="memname"><a class="el" href="classOpenMS_1_1MapAlignmentEvaluationAlgorithmRecall.html">MapAlignmentEvaluationAlgorithmRecall</a>&amp; operator= </td>
          <td>(</td>
          <td class="paramtype">const <a class="el" href="classOpenMS_1_1MapAlignmentEvaluationAlgorithmRecall.html">MapAlignmentEvaluationAlgorithmRecall</a> &amp;&#160;</td>
          <td class="paramname"></td><td>)</td>
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<p>Assignment operator intentionally not implemented -&gt; private. </p>

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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:26 using doxygen 1.8.5</font></TD>
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