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<li class="navelem"><a class="el" href="namespaceOpenMS.html">OpenMS</a></li><li class="navelem"><a class="el" href="classOpenMS_1_1MassDecomposition.html">MassDecomposition</a></li> </ul>
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<p>Class represents a decomposition of a mass into amino acids.
<a href="classOpenMS_1_1MassDecomposition.html#details">More...</a></p>
<p><code>#include <<a class="el" href="MassDecomposition_8h_source.html">OpenMS/CHEMISTRY/MASSDECOMPOSITION/MassDecomposition.h</a>></code></p>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr><td colspan="2"><div class="groupHeader">Constructors and destructors</div></td></tr>
<tr class="memitem:a55fcf29dab601ec0f6b59e7b0a0f4442"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MassDecomposition.html#a55fcf29dab601ec0f6b59e7b0a0f4442">MassDecomposition</a> ()</td></tr>
<tr class="memdesc:a55fcf29dab601ec0f6b59e7b0a0f4442"><td class="mdescLeft"> </td><td class="mdescRight">default constructor <a href="#a55fcf29dab601ec0f6b59e7b0a0f4442">More...</a><br/></td></tr>
<tr class="separator:a55fcf29dab601ec0f6b59e7b0a0f4442"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a736ce599443ed96369e693e49a08db9e"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MassDecomposition.html#a736ce599443ed96369e693e49a08db9e">MassDecomposition</a> (const <a class="el" href="classOpenMS_1_1MassDecomposition.html">MassDecomposition</a> &deco)</td></tr>
<tr class="memdesc:a736ce599443ed96369e693e49a08db9e"><td class="mdescLeft"> </td><td class="mdescRight">copy constructor <a href="#a736ce599443ed96369e693e49a08db9e">More...</a><br/></td></tr>
<tr class="separator:a736ce599443ed96369e693e49a08db9e"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ab246b56dd729ad25bfb07d1b4318b019"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MassDecomposition.html#ab246b56dd729ad25bfb07d1b4318b019">MassDecomposition</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &deco)</td></tr>
<tr class="memdesc:ab246b56dd729ad25bfb07d1b4318b019"><td class="mdescLeft"> </td><td class="mdescRight">constructor with <a class="el" href="classOpenMS_1_1String.html" title="A more convenient string class. ">String</a> as parameter <a href="#ab246b56dd729ad25bfb07d1b4318b019">More...</a><br/></td></tr>
<tr class="separator:ab246b56dd729ad25bfb07d1b4318b019"><td class="memSeparator" colspan="2"> </td></tr>
<tr><td colspan="2"><div class="groupHeader">Operators and accessors</div></td></tr>
<tr class="memitem:a9576414352a53ccc7e87e2defb31d77e"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1MassDecomposition.html">MassDecomposition</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MassDecomposition.html#a9576414352a53ccc7e87e2defb31d77e">operator=</a> (const <a class="el" href="classOpenMS_1_1MassDecomposition.html">MassDecomposition</a> &rhs)</td></tr>
<tr class="memdesc:a9576414352a53ccc7e87e2defb31d77e"><td class="mdescLeft"> </td><td class="mdescRight">assignment operator <a href="#a9576414352a53ccc7e87e2defb31d77e">More...</a><br/></td></tr>
<tr class="separator:a9576414352a53ccc7e87e2defb31d77e"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ab64e5828234a29a839fbe462ff093927"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1MassDecomposition.html">MassDecomposition</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MassDecomposition.html#ab64e5828234a29a839fbe462ff093927">operator+=</a> (const <a class="el" href="classOpenMS_1_1MassDecomposition.html">MassDecomposition</a> &d)</td></tr>
<tr class="memdesc:ab64e5828234a29a839fbe462ff093927"><td class="mdescLeft"> </td><td class="mdescRight">adds the mass decomposition d to this object <a href="#ab64e5828234a29a839fbe462ff093927">More...</a><br/></td></tr>
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<tr class="memitem:a82e960f65e28ae6aba1271adbb83236e"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MassDecomposition.html#a82e960f65e28ae6aba1271adbb83236e">toString</a> () const </td></tr>
<tr class="memdesc:a82e960f65e28ae6aba1271adbb83236e"><td class="mdescLeft"> </td><td class="mdescRight">returns the decomposition as a string <a href="#a82e960f65e28ae6aba1271adbb83236e">More...</a><br/></td></tr>
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<tr class="memitem:a5286d87687a64935681b624983291c19"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MassDecomposition.html#a5286d87687a64935681b624983291c19">toExpandedString</a> () const </td></tr>
<tr class="memdesc:a5286d87687a64935681b624983291c19"><td class="mdescLeft"> </td><td class="mdescRight">returns the decomposition as a string; instead of frequencies the amino acids are repeated <a href="#a5286d87687a64935681b624983291c19">More...</a><br/></td></tr>
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<tr class="memitem:a0168dfdb2feb11d73ed229543b89e4eb"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1MassDecomposition.html">MassDecomposition</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MassDecomposition.html#a0168dfdb2feb11d73ed229543b89e4eb">operator+</a> (const <a class="el" href="classOpenMS_1_1MassDecomposition.html">MassDecomposition</a> &rhs) const </td></tr>
<tr class="memdesc:a0168dfdb2feb11d73ed229543b89e4eb"><td class="mdescLeft"> </td><td class="mdescRight">adds this decomposition and the decomposition given and returns a new composition <a href="#a0168dfdb2feb11d73ed229543b89e4eb">More...</a><br/></td></tr>
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<tr class="memitem:a94e576447d4e9a008c652ce1fc81a0e8"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MassDecomposition.html#a94e576447d4e9a008c652ce1fc81a0e8">getNumberOfMaxAA</a> () const </td></tr>
<tr class="memdesc:a94e576447d4e9a008c652ce1fc81a0e8"><td class="mdescLeft"> </td><td class="mdescRight">returns the max frequency of this composition <a href="#a94e576447d4e9a008c652ce1fc81a0e8">More...</a><br/></td></tr>
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<tr><td colspan="2"><div class="groupHeader">Predicates</div></td></tr>
<tr class="memitem:a944d5e99ad2095c279eced8618f039d1"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MassDecomposition.html#a944d5e99ad2095c279eced8618f039d1">operator<</a> (const <a class="el" href="classOpenMS_1_1MassDecomposition.html">MassDecomposition</a> &rhs) const </td></tr>
<tr class="memdesc:a944d5e99ad2095c279eced8618f039d1"><td class="mdescLeft"> </td><td class="mdescRight">less than predicate <a href="#a944d5e99ad2095c279eced8618f039d1">More...</a><br/></td></tr>
<tr class="separator:a944d5e99ad2095c279eced8618f039d1"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aeaba8ef499c75defec4eee7fbd112622"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MassDecomposition.html#aeaba8ef499c75defec4eee7fbd112622">operator==</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &deco) const </td></tr>
<tr class="memdesc:aeaba8ef499c75defec4eee7fbd112622"><td class="mdescLeft"> </td><td class="mdescRight">equality operator <a href="#aeaba8ef499c75defec4eee7fbd112622">More...</a><br/></td></tr>
<tr class="separator:aeaba8ef499c75defec4eee7fbd112622"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a9af7e3bd4e9ffb5140634e19be5682ba"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MassDecomposition.html#a9af7e3bd4e9ffb5140634e19be5682ba">containsTag</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &tag) const </td></tr>
<tr class="memdesc:a9af7e3bd4e9ffb5140634e19be5682ba"><td class="mdescLeft"> </td><td class="mdescRight">returns true if tag is contained in the mass decomposition <a href="#a9af7e3bd4e9ffb5140634e19be5682ba">More...</a><br/></td></tr>
<tr class="separator:a9af7e3bd4e9ffb5140634e19be5682ba"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a36196513c63ca6262c18453ae84c05f6"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MassDecomposition.html#a36196513c63ca6262c18453ae84c05f6">compatible</a> (const <a class="el" href="classOpenMS_1_1MassDecomposition.html">MassDecomposition</a> &deco) const </td></tr>
<tr class="memdesc:a36196513c63ca6262c18453ae84c05f6"><td class="mdescLeft"> </td><td class="mdescRight">returns true if the mass decomposition if contained in this instance <a href="#a36196513c63ca6262c18453ae84c05f6">More...</a><br/></td></tr>
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pro-attribs"></a>
Protected Attributes</h2></td></tr>
<tr class="memitem:a0fa68d4a0728e0e41d6dc6b1be9eff95"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Map.html">Map</a>< char, <a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MassDecomposition.html#a0fa68d4a0728e0e41d6dc6b1be9eff95">decomp_</a></td></tr>
<tr class="separator:a0fa68d4a0728e0e41d6dc6b1be9eff95"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a838504e6f027b4b7c4dc43da1039d0d1"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MassDecomposition.html#a838504e6f027b4b7c4dc43da1039d0d1">number_of_max_aa_</a></td></tr>
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>Class represents a decomposition of a mass into amino acids. </p>
<p>This class represents a mass decomposition into amino acids. A decomposition are amino acids given with frequencies which add up to a specific mass. </p>
</div><h2 class="groupheader">Constructor & Destructor Documentation</h2>
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<p>default constructor </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1MassDecomposition.html">MassDecomposition</a> </td>
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<td class="paramtype">const <a class="el" href="classOpenMS_1_1MassDecomposition.html">MassDecomposition</a> & </td>
<td class="paramname"><em>deco</em></td><td>)</td>
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<p>copy constructor </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1MassDecomposition.html">MassDecomposition</a> </td>
<td>(</td>
<td class="paramtype">const <a class="el" href="classOpenMS_1_1String.html">String</a> & </td>
<td class="paramname"><em>deco</em></td><td>)</td>
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<span class="mlabels"><span class="mlabel">explicit</span></span> </td>
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<p>constructor with <a class="el" href="classOpenMS_1_1String.html" title="A more convenient string class. ">String</a> as parameter </p>
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<h2 class="groupheader">Member Function Documentation</h2>
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<td class="memname">bool compatible </td>
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<td class="paramtype">const <a class="el" href="classOpenMS_1_1MassDecomposition.html">MassDecomposition</a> & </td>
<td class="paramname"><em>deco</em></td><td>)</td>
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<p>returns true if the mass decomposition if contained in this instance </p>
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<td class="paramtype">const <a class="el" href="classOpenMS_1_1String.html">String</a> & </td>
<td class="paramname"><em>tag</em></td><td>)</td>
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<p>returns true if tag is contained in the mass decomposition </p>
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<td class="memname"><a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> getNumberOfMaxAA </td>
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<p>returns the max frequency of this composition </p>
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<td class="paramtype">const <a class="el" href="classOpenMS_1_1MassDecomposition.html">MassDecomposition</a> & </td>
<td class="paramname"><em>rhs</em></td><td>)</td>
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<p>adds this decomposition and the decomposition given and returns a new composition </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1MassDecomposition.html">MassDecomposition</a>& operator+= </td>
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<td class="paramtype">const <a class="el" href="classOpenMS_1_1MassDecomposition.html">MassDecomposition</a> & </td>
<td class="paramname"><em>d</em></td><td>)</td>
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<p>adds the mass decomposition d to this object </p>
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<td class="paramtype">const <a class="el" href="classOpenMS_1_1MassDecomposition.html">MassDecomposition</a> & </td>
<td class="paramname"><em>rhs</em></td><td>)</td>
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<p>less than predicate </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1MassDecomposition.html">MassDecomposition</a>& operator= </td>
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<td class="paramtype">const <a class="el" href="classOpenMS_1_1MassDecomposition.html">MassDecomposition</a> & </td>
<td class="paramname"><em>rhs</em></td><td>)</td>
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<p>assignment operator </p>
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<td class="memname">bool operator== </td>
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<td class="paramtype">const <a class="el" href="classOpenMS_1_1String.html">String</a> & </td>
<td class="paramname"><em>deco</em></td><td>)</td>
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<p>equality operator </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1String.html">String</a> toExpandedString </td>
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<p>returns the decomposition as a string; instead of frequencies the amino acids are repeated </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1String.html">String</a> toString </td>
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<p>returns the decomposition as a string </p>
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<h2 class="groupheader">Member Data Documentation</h2>
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<td class="memname"><a class="el" href="classOpenMS_1_1Map.html">Map</a><char, <a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a>> decomp_</td>
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<span class="mlabels"><span class="mlabel">protected</span></span> </td>
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<td class="memname"><a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> number_of_max_aa_</td>
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<span class="mlabels"><span class="mlabel">protected</span></span> </td>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:27 using doxygen 1.8.5</font></TD>
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