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<HTML>
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<TITLE>ModelFitter< PeakType, FeatureType > Class Template Reference</TITLE>
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<li class="navelem"><a class="el" href="namespaceOpenMS.html">OpenMS</a></li><li class="navelem"><a class="el" href="classOpenMS_1_1ModelFitter.html">ModelFitter</a></li> </ul>
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<a href="#pub-types">Public Types</a> |
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<div class="headertitle">
<div class="title">ModelFitter< PeakType, FeatureType > Class Template Reference<div class="ingroups"><a class="el" href="group__FeatureFinder.html">FeatureFinder</a></div></div> </div>
</div><!--header-->
<div class="contents">
<p>Tests a group of data points in an LC-MS map for goodness-of-fit with a 2D averagine model.
<a href="classOpenMS_1_1ModelFitter.html#details">More...</a></p>
<p><code>#include <<a class="el" href="ModelFitter_8h_source.html">OpenMS/TRANSFORMATIONS/FEATUREFINDER/ModelFitter.h</a>></code></p>
<div class="dynheader">
Inheritance diagram for ModelFitter< PeakType, FeatureType >:</div>
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<img src="classOpenMS_1_1ModelFitter.png" usemap="#ModelFitter< PeakType, FeatureType >_map" alt=""/>
<map id="ModelFitter< PeakType, FeatureType >_map" name="ModelFitter< PeakType, FeatureType >_map">
<area href="classOpenMS_1_1FeaFiModule.html" title="Implements a module of the FeatureFinder algorithm. " alt="FeaFiModule< PeakType, FeatureType >" shape="rect" coords="0,56,248,80"/>
<area href="structOpenMS_1_1FeatureFinderDefs.html" title="The purpose of this struct is to provide definitions of classes and typedefs which are used throughou..." alt="FeatureFinderDefs" shape="rect" coords="258,56,506,80"/>
<area href="classOpenMS_1_1DefaultParamHandler.html" title="A base class for all classes handling default parameters. " alt="DefaultParamHandler" shape="rect" coords="0,0,248,24"/>
</map>
</div></div>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-types"></a>
Public Types</h2></td></tr>
<tr class="memitem:a6b7b47dd702d9e331586d485013fd1ea"><td class="memItemLeft" align="right" valign="top">enum  </td><td class="memItemRight" valign="bottom">{ <a class="el" href="classOpenMS_1_1ModelFitter.html#a6b7b47dd702d9e331586d485013fd1eaaf388fcb6d444ef59841ef549ca6ee0da">RT</a> = Peak2D::RT,
<a class="el" href="classOpenMS_1_1ModelFitter.html#a6b7b47dd702d9e331586d485013fd1eaa35008b046ec2687e53152082281d0867">MZ</a> = Peak2D::MZ
}</td></tr>
<tr class="separator:a6b7b47dd702d9e331586d485013fd1ea"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:adc75bbd0ca620523daf2e796efdd1cdf"><td class="memItemLeft" align="right" valign="top">typedef IndexSet::const_iterator </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#adc75bbd0ca620523daf2e796efdd1cdf">IndexSetIter</a></td></tr>
<tr class="memdesc:adc75bbd0ca620523daf2e796efdd1cdf"><td class="mdescLeft"> </td><td class="mdescRight">IndexSet iterator. <a href="#adc75bbd0ca620523daf2e796efdd1cdf">More...</a><br/></td></tr>
<tr class="separator:adc75bbd0ca620523daf2e796efdd1cdf"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a5226d265fd03c7b41e9945248d241af1"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1BaseFeature.html#a8ca1d75ff489493f4458fa7137186089">Feature::QualityType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#a5226d265fd03c7b41e9945248d241af1">QualityType</a></td></tr>
<tr class="memdesc:a5226d265fd03c7b41e9945248d241af1"><td class="mdescLeft"> </td><td class="mdescRight">Quality of a feature. <a href="#a5226d265fd03c7b41e9945248d241af1">More...</a><br/></td></tr>
<tr class="separator:a5226d265fd03c7b41e9945248d241af1"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a75145a9f1f2689d0f54565ffbdb1f5d6"><td class="memItemLeft" align="right" valign="top">typedef Feature::CoordinateType </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#a75145a9f1f2689d0f54565ffbdb1f5d6">CoordinateType</a></td></tr>
<tr class="memdesc:a75145a9f1f2689d0f54565ffbdb1f5d6"><td class="mdescLeft"> </td><td class="mdescRight">Single coordinate. <a href="#a75145a9f1f2689d0f54565ffbdb1f5d6">More...</a><br/></td></tr>
<tr class="separator:a75145a9f1f2689d0f54565ffbdb1f5d6"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:adec9115bab6f7a59f89207e636875543"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1Peak2D.html#a4a8c5b2adc05e9ff96a007385bfe9b47">Feature::IntensityType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#adec9115bab6f7a59f89207e636875543">IntensityType</a></td></tr>
<tr class="memdesc:adec9115bab6f7a59f89207e636875543"><td class="mdescLeft"> </td><td class="mdescRight">Single intensity. <a href="#adec9115bab6f7a59f89207e636875543">More...</a><br/></td></tr>
<tr class="separator:adec9115bab6f7a59f89207e636875543"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a9f65527757d7146ea4eabbb506c9a646"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1BaseFeature.html#a87171116869a9f9511d7ce9ad7baf5d6">Feature::ChargeType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#a9f65527757d7146ea4eabbb506c9a646">ChargeType</a></td></tr>
<tr class="memdesc:a9f65527757d7146ea4eabbb506c9a646"><td class="mdescLeft"> </td><td class="mdescRight">Isotope charge. <a href="#a9f65527757d7146ea4eabbb506c9a646">More...</a><br/></td></tr>
<tr class="separator:a9f65527757d7146ea4eabbb506c9a646"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a79ea228cdc8755284e64dd9f625170a3"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1FeaFiModule.html">FeaFiModule</a>< <a class="el" href="namespaceOpenMS.html#a013338b7bdbb5c3b4c78666656070e23">PeakType</a>, <br class="typebreak"/>
FeatureType > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#a79ea228cdc8755284e64dd9f625170a3">Base</a></td></tr>
<tr class="memdesc:a79ea228cdc8755284e64dd9f625170a3"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1FeaFiModule.html" title="Implements a module of the FeatureFinder algorithm. ">FeaFiModule</a>. <a href="#a79ea228cdc8755284e64dd9f625170a3">More...</a><br/></td></tr>
<tr class="separator:a79ea228cdc8755284e64dd9f625170a3"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a31ac7361125f91f71e3d07be39a76023"><td class="memItemLeft" align="right" valign="top">typedef std::vector< <a class="el" href="namespaceOpenMS.html#a013338b7bdbb5c3b4c78666656070e23">PeakType</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#a31ac7361125f91f71e3d07be39a76023">RawDataArrayType</a></td></tr>
<tr class="memdesc:a31ac7361125f91f71e3d07be39a76023"><td class="mdescLeft"> </td><td class="mdescRight">Raw data container type using for the temporary storage of the input data. <a href="#a31ac7361125f91f71e3d07be39a76023">More...</a><br/></td></tr>
<tr class="separator:a31ac7361125f91f71e3d07be39a76023"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_types_classOpenMS_1_1FeaFiModule"><td colspan="2" onclick="javascript:toggleInherit('pub_types_classOpenMS_1_1FeaFiModule')"><img src="closed.png" alt="-"/> Public Types inherited from <a class="el" href="classOpenMS_1_1FeaFiModule.html">FeaFiModule< PeakType, FeatureType ></a></td></tr>
<tr class="memitem:a21ea3968c35235b6b3cd78a2190280d9 inherit pub_types_classOpenMS_1_1FeaFiModule"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1FeatureMap.html">FeatureMap</a>< FeatureType > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a21ea3968c35235b6b3cd78a2190280d9">FeatureMapType</a></td></tr>
<tr class="memdesc:a21ea3968c35235b6b3cd78a2190280d9 inherit pub_types_classOpenMS_1_1FeaFiModule"><td class="mdescLeft"> </td><td class="mdescRight">Output feature map type. <a href="#a21ea3968c35235b6b3cd78a2190280d9">More...</a><br/></td></tr>
<tr class="separator:a21ea3968c35235b6b3cd78a2190280d9 inherit pub_types_classOpenMS_1_1FeaFiModule"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:adf6f376e844058d129ce8ba868276643 inherit pub_types_classOpenMS_1_1FeaFiModule"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1MSExperiment.html">MSExperiment</a>< <a class="el" href="namespaceOpenMS.html#a013338b7bdbb5c3b4c78666656070e23">PeakType</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeaFiModule.html#adf6f376e844058d129ce8ba868276643">MapType</a></td></tr>
<tr class="memdesc:adf6f376e844058d129ce8ba868276643 inherit pub_types_classOpenMS_1_1FeaFiModule"><td class="mdescLeft"> </td><td class="mdescRight">Input map type. <a href="#adf6f376e844058d129ce8ba868276643">More...</a><br/></td></tr>
<tr class="separator:adf6f376e844058d129ce8ba868276643 inherit pub_types_classOpenMS_1_1FeaFiModule"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae4e0f0c176662a323a6a64d29ff986dd inherit pub_types_classOpenMS_1_1FeaFiModule"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1MSExperiment.html#a066042ae14211da37d4fa66d466bfa3e">MapType::SpectrumType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeaFiModule.html#ae4e0f0c176662a323a6a64d29ff986dd">SpectrumType</a></td></tr>
<tr class="memdesc:ae4e0f0c176662a323a6a64d29ff986dd inherit pub_types_classOpenMS_1_1FeaFiModule"><td class="mdescLeft"> </td><td class="mdescRight">Input spectrum type. <a href="#ae4e0f0c176662a323a6a64d29ff986dd">More...</a><br/></td></tr>
<tr class="separator:ae4e0f0c176662a323a6a64d29ff986dd inherit pub_types_classOpenMS_1_1FeaFiModule"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a221361082f641c3fccc58e9bc66aeee1 inherit pub_types_classOpenMS_1_1FeaFiModule"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1Peak2D.html#a4a8c5b2adc05e9ff96a007385bfe9b47">PeakType::IntensityType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a221361082f641c3fccc58e9bc66aeee1">IntensityType</a></td></tr>
<tr class="memdesc:a221361082f641c3fccc58e9bc66aeee1 inherit pub_types_classOpenMS_1_1FeaFiModule"><td class="mdescLeft"> </td><td class="mdescRight">Input intensity type. <a href="#a221361082f641c3fccc58e9bc66aeee1">More...</a><br/></td></tr>
<tr class="separator:a221361082f641c3fccc58e9bc66aeee1 inherit pub_types_classOpenMS_1_1FeaFiModule"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a181486a43da338e31f089df7661f50bb inherit pub_types_classOpenMS_1_1FeaFiModule"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1Peak2D.html#a063d40a3528749f1a905ab04d76387e0">PeakType::CoordinateType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a181486a43da338e31f089df7661f50bb">CoordinateType</a></td></tr>
<tr class="memdesc:a181486a43da338e31f089df7661f50bb inherit pub_types_classOpenMS_1_1FeaFiModule"><td class="mdescLeft"> </td><td class="mdescRight">Input coordinate type. <a href="#a181486a43da338e31f089df7661f50bb">More...</a><br/></td></tr>
<tr class="separator:a181486a43da338e31f089df7661f50bb inherit pub_types_classOpenMS_1_1FeaFiModule"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_types_structOpenMS_1_1FeatureFinderDefs"><td colspan="2" onclick="javascript:toggleInherit('pub_types_structOpenMS_1_1FeatureFinderDefs')"><img src="closed.png" alt="-"/> Public Types inherited from <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html">FeatureFinderDefs</a></td></tr>
<tr class="memitem:a3f3de3e0d751949b8d0b60ffb302944a inherit pub_types_structOpenMS_1_1FeatureFinderDefs"><td class="memItemLeft" align="right" valign="top">enum  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#a3f3de3e0d751949b8d0b60ffb302944a">Flag</a> { <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#a3f3de3e0d751949b8d0b60ffb302944aaa09b651ef326a9d8efcee5cc5b720ab4">UNUSED</a>,
<a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#a3f3de3e0d751949b8d0b60ffb302944aa1e780c62cb3fd2edcac39f739bbe6f6c">USED</a>
}</td></tr>
<tr class="memdesc:a3f3de3e0d751949b8d0b60ffb302944a"><td class="mdescLeft"> </td><td class="mdescRight">Flags that indicate if a peak is already used in a feature. <a href="structOpenMS_1_1FeatureFinderDefs.html#a3f3de3e0d751949b8d0b60ffb302944a">More...</a><br/></td></tr>
<tr class="separator:a3f3de3e0d751949b8d0b60ffb302944a inherit pub_types_structOpenMS_1_1FeatureFinderDefs"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aaee0bfd850887fdc58115cead9e9b8b9 inherit pub_types_structOpenMS_1_1FeatureFinderDefs"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="structOpenMS_1_1IsotopeCluster.html#a0cab124671a3ada269f0553e1c8934da">IsotopeCluster::IndexPair</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#aaee0bfd850887fdc58115cead9e9b8b9">IndexPair</a></td></tr>
<tr class="memdesc:aaee0bfd850887fdc58115cead9e9b8b9 inherit pub_types_structOpenMS_1_1FeatureFinderDefs"><td class="mdescLeft"> </td><td class="mdescRight">Index to peak consisting of two UInts (scan index / peak index) <a href="#aaee0bfd850887fdc58115cead9e9b8b9">More...</a><br/></td></tr>
<tr class="separator:aaee0bfd850887fdc58115cead9e9b8b9 inherit pub_types_structOpenMS_1_1FeatureFinderDefs"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:af01a99958d0b18999737158daf8820ac inherit pub_types_structOpenMS_1_1FeatureFinderDefs"><td class="memItemLeft" align="right" valign="top">typedef <br class="typebreak"/>
<a class="el" href="structOpenMS_1_1IsotopeCluster_1_1ChargedIndexSet.html">IsotopeCluster::ChargedIndexSet</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#af01a99958d0b18999737158daf8820ac">ChargedIndexSet</a></td></tr>
<tr class="memdesc:af01a99958d0b18999737158daf8820ac inherit pub_types_structOpenMS_1_1FeatureFinderDefs"><td class="mdescLeft"> </td><td class="mdescRight">Index to peak consisting of two UInts (scan index / peak index) with charge information. <a href="#af01a99958d0b18999737158daf8820ac">More...</a><br/></td></tr>
<tr class="separator:af01a99958d0b18999737158daf8820ac inherit pub_types_structOpenMS_1_1FeatureFinderDefs"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:af7439235b89a75354a2e87350e36834f inherit pub_types_structOpenMS_1_1FeatureFinderDefs"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="structOpenMS_1_1IsotopeCluster.html#aed4049efd4228c847ab300ac4c466eca">IsotopeCluster::IndexSet</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#af7439235b89a75354a2e87350e36834f">IndexSet</a></td></tr>
<tr class="memdesc:af7439235b89a75354a2e87350e36834f inherit pub_types_structOpenMS_1_1FeatureFinderDefs"><td class="mdescLeft"> </td><td class="mdescRight">A set of peak indices. <a href="#af7439235b89a75354a2e87350e36834f">More...</a><br/></td></tr>
<tr class="separator:af7439235b89a75354a2e87350e36834f inherit pub_types_structOpenMS_1_1FeatureFinderDefs"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:a00b389ceb266aea7a8b43fb9a2d899e0"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#a00b389ceb266aea7a8b43fb9a2d899e0">ModelFitter</a> (const <a class="el" href="classOpenMS_1_1MSExperiment.html">MSExperiment</a>< <a class="el" href="namespaceOpenMS.html#a013338b7bdbb5c3b4c78666656070e23">PeakType</a> > *map, <a class="el" href="classOpenMS_1_1FeatureMap.html">FeatureMap</a>< FeatureType > *features, <a class="el" href="classOpenMS_1_1FeatureFinder.html">FeatureFinder</a> *ff)</td></tr>
<tr class="memdesc:a00b389ceb266aea7a8b43fb9a2d899e0"><td class="mdescLeft"> </td><td class="mdescRight">Constructor. <a href="#a00b389ceb266aea7a8b43fb9a2d899e0">More...</a><br/></td></tr>
<tr class="separator:a00b389ceb266aea7a8b43fb9a2d899e0"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:af8b43fcf339870914680f9afe812cd85"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#af8b43fcf339870914680f9afe812cd85">~ModelFitter</a> ()</td></tr>
<tr class="memdesc:af8b43fcf339870914680f9afe812cd85"><td class="mdescLeft"> </td><td class="mdescRight">Destructor. <a href="#af8b43fcf339870914680f9afe812cd85">More...</a><br/></td></tr>
<tr class="separator:af8b43fcf339870914680f9afe812cd85"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a4aeb5297e8e231a3cc8e6a4f599944b5"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#a4aeb5297e8e231a3cc8e6a4f599944b5">setMonoIsotopicMass</a> (<a class="el" href="classOpenMS_1_1FeaFiModule.html#a181486a43da338e31f089df7661f50bb">CoordinateType</a> mz)</td></tr>
<tr class="memdesc:a4aeb5297e8e231a3cc8e6a4f599944b5"><td class="mdescLeft"> </td><td class="mdescRight">Sets or fixed the monoisotopic m/z at a specific position. <a href="#a4aeb5297e8e231a3cc8e6a4f599944b5">More...</a><br/></td></tr>
<tr class="separator:a4aeb5297e8e231a3cc8e6a4f599944b5"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a9a599157dfa0c832cf50f5596342c73e"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Feature.html">Feature</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#a9a599157dfa0c832cf50f5596342c73e">fit</a> (const <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#af01a99958d0b18999737158daf8820ac">ChargedIndexSet</a> &index_set)</td></tr>
<tr class="memdesc:a9a599157dfa0c832cf50f5596342c73e"><td class="mdescLeft"> </td><td class="mdescRight">Return next feature. <a href="#a9a599157dfa0c832cf50f5596342c73e">More...</a><br/></td></tr>
<tr class="separator:a9a599157dfa0c832cf50f5596342c73e"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_methods_classOpenMS_1_1FeaFiModule"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classOpenMS_1_1FeaFiModule')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classOpenMS_1_1FeaFiModule.html">FeaFiModule< PeakType, FeatureType ></a></td></tr>
<tr class="memitem:ad3fe3d27b98fcd12d996b358e30723fa inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeaFiModule.html#ad3fe3d27b98fcd12d996b358e30723fa">FeaFiModule</a> (const <a class="el" href="classOpenMS_1_1MSExperiment.html">MSExperiment</a>< <a class="el" href="namespaceOpenMS.html#a013338b7bdbb5c3b4c78666656070e23">PeakType</a> > *map, <a class="el" href="classOpenMS_1_1FeatureMap.html">FeatureMap</a>< FeatureType > *features, <a class="el" href="classOpenMS_1_1FeatureFinder.html">FeatureFinder</a> *ff)</td></tr>
<tr class="memdesc:ad3fe3d27b98fcd12d996b358e30723fa inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="mdescLeft"> </td><td class="mdescRight">Constructor. <a href="#ad3fe3d27b98fcd12d996b358e30723fa">More...</a><br/></td></tr>
<tr class="separator:ad3fe3d27b98fcd12d996b358e30723fa inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aa14dc0b3522c854b9005fc9dd5c754d3 inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeaFiModule.html#aa14dc0b3522c854b9005fc9dd5c754d3">~FeaFiModule</a> ()</td></tr>
<tr class="memdesc:aa14dc0b3522c854b9005fc9dd5c754d3 inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="mdescLeft"> </td><td class="mdescRight">destructor <a href="#aa14dc0b3522c854b9005fc9dd5c754d3">More...</a><br/></td></tr>
<tr class="separator:aa14dc0b3522c854b9005fc9dd5c754d3 inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a4698fa90bfbdd5729e0e25c62345ff0d inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a221361082f641c3fccc58e9bc66aeee1">IntensityType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a4698fa90bfbdd5729e0e25c62345ff0d">getPeakIntensity</a> (const <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#aaee0bfd850887fdc58115cead9e9b8b9">FeatureFinderDefs::IndexPair</a> &index) const </td></tr>
<tr class="memdesc:a4698fa90bfbdd5729e0e25c62345ff0d inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="mdescLeft"> </td><td class="mdescRight">Returns the intensity of a peak. <a href="#a4698fa90bfbdd5729e0e25c62345ff0d">More...</a><br/></td></tr>
<tr class="separator:a4698fa90bfbdd5729e0e25c62345ff0d inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a606049d47faacd506705556d333849a2 inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a181486a43da338e31f089df7661f50bb">CoordinateType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a606049d47faacd506705556d333849a2">getPeakMz</a> (const <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#aaee0bfd850887fdc58115cead9e9b8b9">FeatureFinderDefs::IndexPair</a> &index) const </td></tr>
<tr class="memdesc:a606049d47faacd506705556d333849a2 inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="mdescLeft"> </td><td class="mdescRight">Returns the m/z of a peak. <a href="#a606049d47faacd506705556d333849a2">More...</a><br/></td></tr>
<tr class="separator:a606049d47faacd506705556d333849a2 inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a8e5564d7b686645a7d7d6f5aed8cd494 inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a181486a43da338e31f089df7661f50bb">CoordinateType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a8e5564d7b686645a7d7d6f5aed8cd494">getPeakRt</a> (const <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#aaee0bfd850887fdc58115cead9e9b8b9">FeatureFinderDefs::IndexPair</a> &index) const </td></tr>
<tr class="memdesc:a8e5564d7b686645a7d7d6f5aed8cd494 inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="mdescLeft"> </td><td class="mdescRight">Returns the retention time of a peak. <a href="#a8e5564d7b686645a7d7d6f5aed8cd494">More...</a><br/></td></tr>
<tr class="separator:a8e5564d7b686645a7d7d6f5aed8cd494 inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a9f755c03fd9b7a485fec02224cc858d7 inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a9f755c03fd9b7a485fec02224cc858d7">getNextMz</a> (<a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#aaee0bfd850887fdc58115cead9e9b8b9">FeatureFinderDefs::IndexPair</a> &index) const </td></tr>
<tr class="memdesc:a9f755c03fd9b7a485fec02224cc858d7 inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="mdescLeft"> </td><td class="mdescRight">fills <code>index</code> with the index of next peak in m/z dimension <a href="#a9f755c03fd9b7a485fec02224cc858d7">More...</a><br/></td></tr>
<tr class="separator:a9f755c03fd9b7a485fec02224cc858d7 inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a62c6d0208b4fc2bc51e55eea8ea1ce9d inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a62c6d0208b4fc2bc51e55eea8ea1ce9d">getPrevMz</a> (<a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#aaee0bfd850887fdc58115cead9e9b8b9">FeatureFinderDefs::IndexPair</a> &index) const </td></tr>
<tr class="memdesc:a62c6d0208b4fc2bc51e55eea8ea1ce9d inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="mdescLeft"> </td><td class="mdescRight">fills <code>index</code> with the index of previous peak in m/z dimension <a href="#a62c6d0208b4fc2bc51e55eea8ea1ce9d">More...</a><br/></td></tr>
<tr class="separator:a62c6d0208b4fc2bc51e55eea8ea1ce9d inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:adf52c00b457571ad74d59a5d6fd12d1a inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeaFiModule.html#adf52c00b457571ad74d59a5d6fd12d1a">getNextRt</a> (<a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#aaee0bfd850887fdc58115cead9e9b8b9">FeatureFinderDefs::IndexPair</a> &index)</td></tr>
<tr class="memdesc:adf52c00b457571ad74d59a5d6fd12d1a inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="mdescLeft"> </td><td class="mdescRight">fills <code>index</code> with the index of the nearest peak in the next scan <a href="#adf52c00b457571ad74d59a5d6fd12d1a">More...</a><br/></td></tr>
<tr class="separator:adf52c00b457571ad74d59a5d6fd12d1a inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ad4efb644d8a117edfaf7f0f5a9b34e0a inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeaFiModule.html#ad4efb644d8a117edfaf7f0f5a9b34e0a">getPrevRt</a> (<a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#aaee0bfd850887fdc58115cead9e9b8b9">FeatureFinderDefs::IndexPair</a> &index)</td></tr>
<tr class="memdesc:ad4efb644d8a117edfaf7f0f5a9b34e0a inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="mdescLeft"> </td><td class="mdescRight">fills <code>index</code> with the index of the nearest peak in the previous scan <a href="#ad4efb644d8a117edfaf7f0f5a9b34e0a">More...</a><br/></td></tr>
<tr class="separator:ad4efb644d8a117edfaf7f0f5a9b34e0a inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ac641d17ba54cde66c331d17bdee355e8 inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeaFiModule.html#ac641d17ba54cde66c331d17bdee355e8">addConvexHull</a> (const <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#af7439235b89a75354a2e87350e36834f">FeatureFinderDefs::IndexSet</a> &set, <a class="el" href="classOpenMS_1_1Feature.html">Feature</a> &feature) const </td></tr>
<tr class="memdesc:ac641d17ba54cde66c331d17bdee355e8 inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="mdescLeft"> </td><td class="mdescRight">Calculates the convex hull of a index <code>set</code> and adds it to the <code>feature</code>. <a href="#ac641d17ba54cde66c331d17bdee355e8">More...</a><br/></td></tr>
<tr class="separator:ac641d17ba54cde66c331d17bdee355e8 inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_methods_classOpenMS_1_1DefaultParamHandler"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classOpenMS_1_1DefaultParamHandler')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td></tr>
<tr class="memitem:afb6802fda161cb0c1a4a05597f94aecc inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#afb6802fda161cb0c1a4a05597f94aecc">DefaultParamHandler</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &name)</td></tr>
<tr class="memdesc:afb6802fda161cb0c1a4a05597f94aecc inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Constructor with name that is displayed in error messages. <a href="#afb6802fda161cb0c1a4a05597f94aecc">More...</a><br/></td></tr>
<tr class="separator:afb6802fda161cb0c1a4a05597f94aecc inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a954da7eef3cfddda446574eaadd20abb inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a954da7eef3cfddda446574eaadd20abb">DefaultParamHandler</a> (const <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &rhs)</td></tr>
<tr class="memdesc:a954da7eef3cfddda446574eaadd20abb inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Copy constructor. <a href="#a954da7eef3cfddda446574eaadd20abb">More...</a><br/></td></tr>
<tr class="separator:a954da7eef3cfddda446574eaadd20abb inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a11e9d6dd34fe8860874aa8abe0ec121b inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a11e9d6dd34fe8860874aa8abe0ec121b">~DefaultParamHandler</a> ()</td></tr>
<tr class="memdesc:a11e9d6dd34fe8860874aa8abe0ec121b inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Destructor. <a href="#a11e9d6dd34fe8860874aa8abe0ec121b">More...</a><br/></td></tr>
<tr class="separator:a11e9d6dd34fe8860874aa8abe0ec121b inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae6b6d68036a573a44f6609460ba2dfb6 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ae6b6d68036a573a44f6609460ba2dfb6">operator=</a> (const <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &rhs)</td></tr>
<tr class="memdesc:ae6b6d68036a573a44f6609460ba2dfb6 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Assignment operator. <a href="#ae6b6d68036a573a44f6609460ba2dfb6">More...</a><br/></td></tr>
<tr class="separator:ae6b6d68036a573a44f6609460ba2dfb6 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ac435f2dd4d9f9328db83af97129a8d7e inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ac435f2dd4d9f9328db83af97129a8d7e">operator==</a> (const <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &rhs) const </td></tr>
<tr class="memdesc:ac435f2dd4d9f9328db83af97129a8d7e inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Equality operator. <a href="#ac435f2dd4d9f9328db83af97129a8d7e">More...</a><br/></td></tr>
<tr class="separator:ac435f2dd4d9f9328db83af97129a8d7e inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:abc8067511cfc949ae942ea2b08588f81 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#abc8067511cfc949ae942ea2b08588f81">setParameters</a> (const <a class="el" href="classOpenMS_1_1Param.html">Param</a> &param)</td></tr>
<tr class="memdesc:abc8067511cfc949ae942ea2b08588f81 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Sets the parameters. <a href="#abc8067511cfc949ae942ea2b08588f81">More...</a><br/></td></tr>
<tr class="separator:abc8067511cfc949ae942ea2b08588f81 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a7f6aab5a7dfbdd1c062a4352a29361f3 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1Param.html">Param</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a7f6aab5a7dfbdd1c062a4352a29361f3">getParameters</a> () const </td></tr>
<tr class="memdesc:a7f6aab5a7dfbdd1c062a4352a29361f3 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Non-mutable access to the parameters. <a href="#a7f6aab5a7dfbdd1c062a4352a29361f3">More...</a><br/></td></tr>
<tr class="separator:a7f6aab5a7dfbdd1c062a4352a29361f3 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a02f02fa9832ca3e8d47c575a39803a2a inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1Param.html">Param</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a02f02fa9832ca3e8d47c575a39803a2a">getDefaults</a> () const </td></tr>
<tr class="memdesc:a02f02fa9832ca3e8d47c575a39803a2a inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Non-mutable access to the default parameters. <a href="#a02f02fa9832ca3e8d47c575a39803a2a">More...</a><br/></td></tr>
<tr class="separator:a02f02fa9832ca3e8d47c575a39803a2a inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aaee0f2845288173de9f6ad47e6ad31d5 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1String.html">String</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#aaee0f2845288173de9f6ad47e6ad31d5">getName</a> () const </td></tr>
<tr class="memdesc:aaee0f2845288173de9f6ad47e6ad31d5 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Non-mutable access to the name. <a href="#aaee0f2845288173de9f6ad47e6ad31d5">More...</a><br/></td></tr>
<tr class="separator:aaee0f2845288173de9f6ad47e6ad31d5 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a77d37f2e1c12e8bd33ea0e660a89e927 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a77d37f2e1c12e8bd33ea0e660a89e927">setName</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &name)</td></tr>
<tr class="memdesc:a77d37f2e1c12e8bd33ea0e660a89e927 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Mutable access to the name. <a href="#a77d37f2e1c12e8bd33ea0e660a89e927">More...</a><br/></td></tr>
<tr class="separator:a77d37f2e1c12e8bd33ea0e660a89e927 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a768d4a2093627a2f34728656a9721bdf inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const std::vector< <a class="el" href="classOpenMS_1_1String.html">String</a> > & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a768d4a2093627a2f34728656a9721bdf">getSubsections</a> () const </td></tr>
<tr class="memdesc:a768d4a2093627a2f34728656a9721bdf inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Non-mutable access to the registered subsections. <a href="#a768d4a2093627a2f34728656a9721bdf">More...</a><br/></td></tr>
<tr class="separator:a768d4a2093627a2f34728656a9721bdf inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pro-methods"></a>
Protected Member Functions</h2></td></tr>
<tr class="memitem:a776f7572fc4f466e9527ca233471920d"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#a776f7572fc4f466e9527ca233471920d">updateMembers_</a> ()</td></tr>
<tr class="memdesc:a776f7572fc4f466e9527ca233471920d"><td class="mdescLeft"> </td><td class="mdescRight">This method is used to update extra member variables at the end of the <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#abc8067511cfc949ae942ea2b08588f81" title="Sets the parameters. ">setParameters()</a> method. <a href="#a776f7572fc4f466e9527ca233471920d">More...</a><br/></td></tr>
<tr class="separator:a776f7572fc4f466e9527ca233471920d"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aa08948a609e0be02a55895209d3d77a9"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1ModelFitter.html#a5226d265fd03c7b41e9945248d241af1">QualityType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#aa08948a609e0be02a55895209d3d77a9">fitMZLoop_</a> (const <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#af01a99958d0b18999737158daf8820ac">ChargedIndexSet</a> &set, const <a class="el" href="classOpenMS_1_1ModelFitter.html#a9f65527757d7146ea4eabbb506c9a646">ChargeType</a> &charge)</td></tr>
<tr class="memdesc:aa08948a609e0be02a55895209d3d77a9"><td class="mdescLeft"> </td><td class="mdescRight">main fit loop <a href="#aa08948a609e0be02a55895209d3d77a9">More...</a><br/></td></tr>
<tr class="separator:aa08948a609e0be02a55895209d3d77a9"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a520ad36c37273100004a5dca3c2a6c24"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1ModelFitter.html#a5226d265fd03c7b41e9945248d241af1">QualityType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#a520ad36c37273100004a5dca3c2a6c24">evaluate_</a> (const <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#af7439235b89a75354a2e87350e36834f">IndexSet</a> &set) const </td></tr>
<tr class="memdesc:a520ad36c37273100004a5dca3c2a6c24"><td class="mdescLeft"> </td><td class="mdescRight">evaluate 2d-model <a href="#a520ad36c37273100004a5dca3c2a6c24">More...</a><br/></td></tr>
<tr class="separator:a520ad36c37273100004a5dca3c2a6c24"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a5e69531f4b15948d57b30909fdba0cb4"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1ModelFitter.html#a5226d265fd03c7b41e9945248d241af1">QualityType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#a5e69531f4b15948d57b30909fdba0cb4">fitRT_</a> (<a class="el" href="classOpenMS_1_1InterpolationModel.html">InterpolationModel</a> *&model) const </td></tr>
<tr class="memdesc:a5e69531f4b15948d57b30909fdba0cb4"><td class="mdescLeft"> </td><td class="mdescRight">1d fit in RT <a href="#a5e69531f4b15948d57b30909fdba0cb4">More...</a><br/></td></tr>
<tr class="separator:a5e69531f4b15948d57b30909fdba0cb4"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a4e1ed92e7c5c8f3b4db0378a122ef3b1"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1ModelFitter.html#a5226d265fd03c7b41e9945248d241af1">QualityType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#a4e1ed92e7c5c8f3b4db0378a122ef3b1">fitMZ_</a> (<a class="el" href="classOpenMS_1_1InterpolationModel.html">InterpolationModel</a> *&model, const <a class="el" href="classOpenMS_1_1ModelFitter.html#a9f65527757d7146ea4eabbb506c9a646">ChargeType</a> &charge) const </td></tr>
<tr class="memdesc:a4e1ed92e7c5c8f3b4db0378a122ef3b1"><td class="mdescLeft"> </td><td class="mdescRight">1d fit in MZ <a href="#a4e1ed92e7c5c8f3b4db0378a122ef3b1">More...</a><br/></td></tr>
<tr class="separator:a4e1ed92e7c5c8f3b4db0378a122ef3b1"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a9e49d9564896fee1216a006f907d139d"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#a9e49d9564896fee1216a006f907d139d">doProjectionDim_</a> (const <a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> dim, const <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#af01a99958d0b18999737158daf8820ac">ChargedIndexSet</a> &index_set, <a class="el" href="classOpenMS_1_1ModelFitter.html#a31ac7361125f91f71e3d07be39a76023">RawDataArrayType</a> &set) const </td></tr>
<tr class="memdesc:a9e49d9564896fee1216a006f907d139d"><td class="mdescLeft"> </td><td class="mdescRight">Project the raw data into 1-dim array. <a href="#a9e49d9564896fee1216a006f907d139d">More...</a><br/></td></tr>
<tr class="separator:a9e49d9564896fee1216a006f907d139d"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pro_methods_classOpenMS_1_1DefaultParamHandler"><td colspan="2" onclick="javascript:toggleInherit('pro_methods_classOpenMS_1_1DefaultParamHandler')"><img src="closed.png" alt="-"/> Protected Member Functions inherited from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td></tr>
<tr class="memitem:a2802c591e6d7fd3fd9cc35f5e875d0ba inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a2802c591e6d7fd3fd9cc35f5e875d0ba">defaultsToParam_</a> ()</td></tr>
<tr class="memdesc:a2802c591e6d7fd3fd9cc35f5e875d0ba inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Updates the parameters after the defaults have been set in the constructor. <a href="#a2802c591e6d7fd3fd9cc35f5e875d0ba">More...</a><br/></td></tr>
<tr class="separator:a2802c591e6d7fd3fd9cc35f5e875d0ba inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pro-attribs"></a>
Protected Attributes</h2></td></tr>
<tr class="memitem:a9e7780ed6d3446aebf9ba5ccf1bb9574"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1ProductModel.html">ProductModel</a>< 2 > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#a9e7780ed6d3446aebf9ba5ccf1bb9574">model2D_</a></td></tr>
<tr class="memdesc:a9e7780ed6d3446aebf9ba5ccf1bb9574"><td class="mdescLeft"> </td><td class="mdescRight">2D model <a href="#a9e7780ed6d3446aebf9ba5ccf1bb9574">More...</a><br/></td></tr>
<tr class="separator:a9e7780ed6d3446aebf9ba5ccf1bb9574"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ab30d394914362ab0b7a8918133eec401"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Math_1_1BasicStatistics.html">Math::BasicStatistics</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#ab30d394914362ab0b7a8918133eec401">mz_stat_</a></td></tr>
<tr class="memdesc:ab30d394914362ab0b7a8918133eec401"><td class="mdescLeft"> </td><td class="mdescRight">statistics for mz <a href="#ab30d394914362ab0b7a8918133eec401">More...</a><br/></td></tr>
<tr class="separator:ab30d394914362ab0b7a8918133eec401"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a3c4dee13554dda34293916d83f811aaa"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Math_1_1AsymmetricStatistics.html">Math::AsymmetricStatistics</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#a3c4dee13554dda34293916d83f811aaa">rt_stat_</a></td></tr>
<tr class="memdesc:a3c4dee13554dda34293916d83f811aaa"><td class="mdescLeft"> </td><td class="mdescRight">statistics for rt <a href="#a3c4dee13554dda34293916d83f811aaa">More...</a><br/></td></tr>
<tr class="separator:a3c4dee13554dda34293916d83f811aaa"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ad1dd87342de3593f23630e645f995d1f"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1ModelFitter.html#a31ac7361125f91f71e3d07be39a76023">RawDataArrayType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#ad1dd87342de3593f23630e645f995d1f">mz_input_data_</a></td></tr>
<tr class="memdesc:ad1dd87342de3593f23630e645f995d1f"><td class="mdescLeft"> </td><td class="mdescRight">mz raw data <a href="#ad1dd87342de3593f23630e645f995d1f">More...</a><br/></td></tr>
<tr class="separator:ad1dd87342de3593f23630e645f995d1f"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a100b9653d9495c862bc57cee3dcdbb3f"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1ModelFitter.html#a31ac7361125f91f71e3d07be39a76023">RawDataArrayType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#a100b9653d9495c862bc57cee3dcdbb3f">rt_input_data_</a></td></tr>
<tr class="memdesc:a100b9653d9495c862bc57cee3dcdbb3f"><td class="mdescLeft"> </td><td class="mdescRight">rt raw data <a href="#a100b9653d9495c862bc57cee3dcdbb3f">More...</a><br/></td></tr>
<tr class="separator:a100b9653d9495c862bc57cee3dcdbb3f"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a550aafc7c40f4722708edca5488f5b6b"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a181486a43da338e31f089df7661f50bb">CoordinateType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#a550aafc7c40f4722708edca5488f5b6b">tolerance_stdev_box_</a></td></tr>
<tr class="memdesc:a550aafc7c40f4722708edca5488f5b6b"><td class="mdescLeft"> </td><td class="mdescRight">tolerance used for bounding box <a href="#a550aafc7c40f4722708edca5488f5b6b">More...</a><br/></td></tr>
<tr class="separator:a550aafc7c40f4722708edca5488f5b6b"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a26fe6c8385c2f47cc989960b4826c0bd"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a181486a43da338e31f089df7661f50bb">CoordinateType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#a26fe6c8385c2f47cc989960b4826c0bd">monoisotopic_mz_</a></td></tr>
<tr class="memdesc:a26fe6c8385c2f47cc989960b4826c0bd"><td class="mdescLeft"> </td><td class="mdescRight">monoistopic mass <a href="#a26fe6c8385c2f47cc989960b4826c0bd">More...</a><br/></td></tr>
<tr class="separator:a26fe6c8385c2f47cc989960b4826c0bd"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a5cf51152410c3773eeb23c45f288986c"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a181486a43da338e31f089df7661f50bb">CoordinateType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#a5cf51152410c3773eeb23c45f288986c">interpolation_step_mz_</a></td></tr>
<tr class="memdesc:a5cf51152410c3773eeb23c45f288986c"><td class="mdescLeft"> </td><td class="mdescRight">interpolation step size (in m/z) <a href="#a5cf51152410c3773eeb23c45f288986c">More...</a><br/></td></tr>
<tr class="separator:a5cf51152410c3773eeb23c45f288986c"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:adf3e31ca2a7272a82a67175153f39f98"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a181486a43da338e31f089df7661f50bb">CoordinateType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#adf3e31ca2a7272a82a67175153f39f98">interpolation_step_rt_</a></td></tr>
<tr class="memdesc:adf3e31ca2a7272a82a67175153f39f98"><td class="mdescLeft"> </td><td class="mdescRight">interpolation step size (in retention time) <a href="#adf3e31ca2a7272a82a67175153f39f98">More...</a><br/></td></tr>
<tr class="separator:adf3e31ca2a7272a82a67175153f39f98"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae29ab2ec7ad095c17fd97d56d4501c1c"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#ae29ab2ec7ad095c17fd97d56d4501c1c">max_isotope_</a></td></tr>
<tr class="memdesc:ae29ab2ec7ad095c17fd97d56d4501c1c"><td class="mdescLeft"> </td><td class="mdescRight">maximum isotopic rank to be considered <a href="#ae29ab2ec7ad095c17fd97d56d4501c1c">More...</a><br/></td></tr>
<tr class="separator:ae29ab2ec7ad095c17fd97d56d4501c1c"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:abfeee1372fcfb6bea261621d9f553e3d"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a181486a43da338e31f089df7661f50bb">CoordinateType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#abfeee1372fcfb6bea261621d9f553e3d">iso_stdev_first_</a></td></tr>
<tr class="memdesc:abfeee1372fcfb6bea261621d9f553e3d"><td class="mdescLeft"> </td><td class="mdescRight">first stdev <a href="#abfeee1372fcfb6bea261621d9f553e3d">More...</a><br/></td></tr>
<tr class="separator:abfeee1372fcfb6bea261621d9f553e3d"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a61031e41af78cf1ff1d097717b27faaa"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a181486a43da338e31f089df7661f50bb">CoordinateType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#a61031e41af78cf1ff1d097717b27faaa">iso_stdev_last_</a></td></tr>
<tr class="memdesc:a61031e41af78cf1ff1d097717b27faaa"><td class="mdescLeft"> </td><td class="mdescRight">last stdev <a href="#a61031e41af78cf1ff1d097717b27faaa">More...</a><br/></td></tr>
<tr class="separator:a61031e41af78cf1ff1d097717b27faaa"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a929a8e237da6180773aa965601894c60"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a181486a43da338e31f089df7661f50bb">CoordinateType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#a929a8e237da6180773aa965601894c60">iso_stdev_stepsize_</a></td></tr>
<tr class="memdesc:a929a8e237da6180773aa965601894c60"><td class="mdescLeft"> </td><td class="mdescRight">step size <a href="#a929a8e237da6180773aa965601894c60">More...</a><br/></td></tr>
<tr class="separator:a929a8e237da6180773aa965601894c60"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a9f3a5a09e281e06e938ab4ba54154aae"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#a9f3a5a09e281e06e938ab4ba54154aae">first_mz_model_</a></td></tr>
<tr class="memdesc:a9f3a5a09e281e06e938ab4ba54154aae"><td class="mdescLeft"> </td><td class="mdescRight">first mz model (0=Gaussian, 1....n = charge ) <a href="#a9f3a5a09e281e06e938ab4ba54154aae">More...</a><br/></td></tr>
<tr class="separator:a9f3a5a09e281e06e938ab4ba54154aae"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a966741575418441aef18050ea04b8519"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#a966741575418441aef18050ea04b8519">last_mz_model_</a></td></tr>
<tr class="memdesc:a966741575418441aef18050ea04b8519"><td class="mdescLeft"> </td><td class="mdescRight">last mz model <a href="#a966741575418441aef18050ea04b8519">More...</a><br/></td></tr>
<tr class="separator:a966741575418441aef18050ea04b8519"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a141bcda36021c50ea1e95a234e9aacff"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a181486a43da338e31f089df7661f50bb">CoordinateType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#a141bcda36021c50ea1e95a234e9aacff">isotope_stdev_</a></td></tr>
<tr class="memdesc:a141bcda36021c50ea1e95a234e9aacff"><td class="mdescLeft"> </td><td class="mdescRight">isotope stdev <a href="#a141bcda36021c50ea1e95a234e9aacff">More...</a><br/></td></tr>
<tr class="separator:a141bcda36021c50ea1e95a234e9aacff"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ac230d1bc572fc770f8e254d4f06088cb"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#ac230d1bc572fc770f8e254d4f06088cb">algorithm_</a></td></tr>
<tr class="memdesc:ac230d1bc572fc770f8e254d4f06088cb"><td class="mdescLeft"> </td><td class="mdescRight">algorithm <a href="#ac230d1bc572fc770f8e254d4f06088cb">More...</a><br/></td></tr>
<tr class="separator:ac230d1bc572fc770f8e254d4f06088cb"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a65156c6922b9524db057849c1d14cd56"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#a65156c6922b9524db057849c1d14cd56">max_iteration_</a></td></tr>
<tr class="memdesc:a65156c6922b9524db057849c1d14cd56"><td class="mdescLeft"> </td><td class="mdescRight">Maximum number of iterations. <a href="#a65156c6922b9524db057849c1d14cd56">More...</a><br/></td></tr>
<tr class="separator:a65156c6922b9524db057849c1d14cd56"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a29677fd7ae2cbf6f04964da70997b4d6"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a181486a43da338e31f089df7661f50bb">CoordinateType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#a29677fd7ae2cbf6f04964da70997b4d6">deltaAbsError_</a></td></tr>
<tr class="memdesc:a29677fd7ae2cbf6f04964da70997b4d6"><td class="mdescLeft"> </td><td class="mdescRight">Absolute error. <a href="#a29677fd7ae2cbf6f04964da70997b4d6">More...</a><br/></td></tr>
<tr class="separator:a29677fd7ae2cbf6f04964da70997b4d6"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aae802b51d6efd35a1378b228f4f40770"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a181486a43da338e31f089df7661f50bb">CoordinateType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#aae802b51d6efd35a1378b228f4f40770">deltaRelError_</a></td></tr>
<tr class="memdesc:aae802b51d6efd35a1378b228f4f40770"><td class="mdescLeft"> </td><td class="mdescRight">Relative error. <a href="#aae802b51d6efd35a1378b228f4f40770">More...</a><br/></td></tr>
<tr class="separator:aae802b51d6efd35a1378b228f4f40770"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:abbc8755ed3bfc1ce70b9a6e01b46bafd"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Math_1_1BasicStatistics.html">Math::BasicStatistics</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#abbc8755ed3bfc1ce70b9a6e01b46bafd">basic_stat_</a></td></tr>
<tr class="memdesc:abbc8755ed3bfc1ce70b9a6e01b46bafd"><td class="mdescLeft"> </td><td class="mdescRight">statistics <a href="#abbc8755ed3bfc1ce70b9a6e01b46bafd">More...</a><br/></td></tr>
<tr class="separator:abbc8755ed3bfc1ce70b9a6e01b46bafd"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ad14e23949d04910624b46731e5268fb5"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1ModelFitter.html#a5226d265fd03c7b41e9945248d241af1">QualityType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#ad14e23949d04910624b46731e5268fb5">quality_rt_</a></td></tr>
<tr class="memdesc:ad14e23949d04910624b46731e5268fb5"><td class="mdescLeft"> </td><td class="mdescRight">fit quality in RT dimension <a href="#ad14e23949d04910624b46731e5268fb5">More...</a><br/></td></tr>
<tr class="separator:ad14e23949d04910624b46731e5268fb5"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:afe69329d6075fc44aba749ead1fe6a8b"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1ModelFitter.html#a5226d265fd03c7b41e9945248d241af1">QualityType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#afe69329d6075fc44aba749ead1fe6a8b">quality_mz_</a></td></tr>
<tr class="memdesc:afe69329d6075fc44aba749ead1fe6a8b"><td class="mdescLeft"> </td><td class="mdescRight">fit quality in MZ dimension <a href="#afe69329d6075fc44aba749ead1fe6a8b">More...</a><br/></td></tr>
<tr class="separator:afe69329d6075fc44aba749ead1fe6a8b"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pro_attribs_classOpenMS_1_1FeaFiModule"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classOpenMS_1_1FeaFiModule')"><img src="closed.png" alt="-"/> Protected Attributes inherited from <a class="el" href="classOpenMS_1_1FeaFiModule.html">FeaFiModule< PeakType, FeatureType ></a></td></tr>
<tr class="memitem:a365c5cf67d48519199fe00cb5688d628 inherit pro_attribs_classOpenMS_1_1FeaFiModule"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1FeaFiModule.html#adf6f376e844058d129ce8ba868276643">MapType</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a365c5cf67d48519199fe00cb5688d628">map_</a></td></tr>
<tr class="memdesc:a365c5cf67d48519199fe00cb5688d628 inherit pro_attribs_classOpenMS_1_1FeaFiModule"><td class="mdescLeft"> </td><td class="mdescRight">Input data pointer. <a href="#a365c5cf67d48519199fe00cb5688d628">More...</a><br/></td></tr>
<tr class="separator:a365c5cf67d48519199fe00cb5688d628 inherit pro_attribs_classOpenMS_1_1FeaFiModule"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a5f09052343ef99616ad653897841ce3e inherit pro_attribs_classOpenMS_1_1FeaFiModule"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a21ea3968c35235b6b3cd78a2190280d9">FeatureMapType</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a5f09052343ef99616ad653897841ce3e">features_</a></td></tr>
<tr class="memdesc:a5f09052343ef99616ad653897841ce3e inherit pro_attribs_classOpenMS_1_1FeaFiModule"><td class="mdescLeft"> </td><td class="mdescRight">Output data pointer. <a href="#a5f09052343ef99616ad653897841ce3e">More...</a><br/></td></tr>
<tr class="separator:a5f09052343ef99616ad653897841ce3e inherit pro_attribs_classOpenMS_1_1FeaFiModule"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:adf68cb378c76b322b2cc4dbb2c145a3e inherit pro_attribs_classOpenMS_1_1FeaFiModule"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1FeatureFinder.html">FeatureFinder</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeaFiModule.html#adf68cb378c76b322b2cc4dbb2c145a3e">ff_</a></td></tr>
<tr class="memdesc:adf68cb378c76b322b2cc4dbb2c145a3e inherit pro_attribs_classOpenMS_1_1FeaFiModule"><td class="mdescLeft"> </td><td class="mdescRight">Pointer to the calling <a class="el" href="classOpenMS_1_1FeatureFinder.html" title="The main feature finder class. ">FeatureFinder</a> that is used to access the feature flags and report progress. <a href="#adf68cb378c76b322b2cc4dbb2c145a3e">More...</a><br/></td></tr>
<tr class="separator:adf68cb378c76b322b2cc4dbb2c145a3e inherit pro_attribs_classOpenMS_1_1FeaFiModule"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pro_attribs_classOpenMS_1_1DefaultParamHandler"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classOpenMS_1_1DefaultParamHandler')"><img src="closed.png" alt="-"/> Protected Attributes inherited from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td></tr>
<tr class="memitem:a28c73e623c63a4fe3bfceb1ae8274f39 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Param.html">Param</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a28c73e623c63a4fe3bfceb1ae8274f39">param_</a></td></tr>
<tr class="memdesc:a28c73e623c63a4fe3bfceb1ae8274f39 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Container for current parameters. <a href="#a28c73e623c63a4fe3bfceb1ae8274f39">More...</a><br/></td></tr>
<tr class="separator:a28c73e623c63a4fe3bfceb1ae8274f39 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a761b1937850c141d0c6fff0e4d633a04 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Param.html">Param</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a761b1937850c141d0c6fff0e4d633a04">defaults_</a></td></tr>
<tr class="memdesc:a761b1937850c141d0c6fff0e4d633a04 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Container for default parameters. This member should be filled in the constructor of derived classes! <a href="#a761b1937850c141d0c6fff0e4d633a04">More...</a><br/></td></tr>
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<tr class="memitem:ac4b0e20bc59c7a5afe016c69067e428c inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">std::vector< <a class="el" href="classOpenMS_1_1String.html">String</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ac4b0e20bc59c7a5afe016c69067e428c">subsections_</a></td></tr>
<tr class="memdesc:ac4b0e20bc59c7a5afe016c69067e428c inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Container for registered subsections. This member should be filled in the constructor of derived classes! <a href="#ac4b0e20bc59c7a5afe016c69067e428c">More...</a><br/></td></tr>
<tr class="separator:ac4b0e20bc59c7a5afe016c69067e428c inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a5a51f3f150b09068256195e934339a19 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a5a51f3f150b09068256195e934339a19">error_name_</a></td></tr>
<tr class="memdesc:a5a51f3f150b09068256195e934339a19 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Name that is displayed in error messages during the parameter checking. <a href="#a5a51f3f150b09068256195e934339a19">More...</a><br/></td></tr>
<tr class="separator:a5a51f3f150b09068256195e934339a19 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a7c3b265b697a57615da5cd3274780efd inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a7c3b265b697a57615da5cd3274780efd">check_defaults_</a></td></tr>
<tr class="memdesc:a7c3b265b697a57615da5cd3274780efd inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">If this member is set to false no checking if parameters in done;. <a href="#a7c3b265b697a57615da5cd3274780efd">More...</a><br/></td></tr>
<tr class="separator:a7c3b265b697a57615da5cd3274780efd inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aba444910e4fccb93f91bf7ab135f508a inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#aba444910e4fccb93f91bf7ab135f508a">warn_empty_defaults_</a></td></tr>
<tr class="memdesc:aba444910e4fccb93f91bf7ab135f508a inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">If this member is set to false no warning is emitted when defaults are empty;. <a href="#aba444910e4fccb93f91bf7ab135f508a">More...</a><br/></td></tr>
<tr class="separator:aba444910e4fccb93f91bf7ab135f508a inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-methods"></a>
Private Member Functions</h2></td></tr>
<tr class="memitem:a1fe4d38b96532c05c6931436ed5bc4db"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#a1fe4d38b96532c05c6931436ed5bc4db">ModelFitter</a> ()</td></tr>
<tr class="memdesc:a1fe4d38b96532c05c6931436ed5bc4db"><td class="mdescLeft"> </td><td class="mdescRight">Not implemented. <a href="#a1fe4d38b96532c05c6931436ed5bc4db">More...</a><br/></td></tr>
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<tr class="memitem:a713ca6314eab4ecca52be610f61e76a1"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1ModelFitter.html">ModelFitter</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#a713ca6314eab4ecca52be610f61e76a1">operator=</a> (const <a class="el" href="classOpenMS_1_1ModelFitter.html">ModelFitter</a> &)</td></tr>
<tr class="memdesc:a713ca6314eab4ecca52be610f61e76a1"><td class="mdescLeft"> </td><td class="mdescRight">Not implemented. <a href="#a713ca6314eab4ecca52be610f61e76a1">More...</a><br/></td></tr>
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<tr class="memitem:a8f666019227935c4c4a5add7bc45a609"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html#a8f666019227935c4c4a5add7bc45a609">ModelFitter</a> (const <a class="el" href="classOpenMS_1_1ModelFitter.html">ModelFitter</a> &)</td></tr>
<tr class="memdesc:a8f666019227935c4c4a5add7bc45a609"><td class="mdescLeft"> </td><td class="mdescRight">Not implemented. <a href="#a8f666019227935c4c4a5add7bc45a609">More...</a><br/></td></tr>
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><h3>template<class PeakType, class FeatureType><br/>
class OpenMS::ModelFitter< PeakType, FeatureType ></h3>
<p>Tests a group of data points in an LC-MS map for goodness-of-fit with a 2D averagine model. </p>
<p>The <a class="el" href="classOpenMS_1_1ModelFitter.html" title="Tests a group of data points in an LC-MS map for goodness-of-fit with a 2D averagine model...">ModelFitter</a> class uses a gaussian or isotope model in m/z and bigauss, lmagauss (bigauss with Levenberg-Marquardt) or emg (exponentially modified Gaussian with lma optimized parameters) in retention time.</p>
<p>For the isotope model, we test different charge states and peaks widths.</p>
<dl class="todo"><dt><b><a class="el" href="todo.html#_todo000022">Todo:</a></b></dt><dd>Fix problem with other peak types than <a class="el" href="classOpenMS_1_1Peak1D.html" title="A 1-dimensional raw data point or peak. ">Peak1D</a> and enable the respective tests for <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimple.html" title="FeatureFinderAlgorithm implementation using the Simple* modules. ">FeatureFinderAlgorithmSimple</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimplest.html" title="FeatureFinderAlgorithm implementation using the Simple* modules. ">FeatureFinderAlgorithmSimplest</a>, FeatureFinderAlgorithmWavelet (Clemens)</dd></dl>
<B>Parameters of this class are:</B><BR><BR>
<table border="1" style="border-style:solid; border-collapse:collapse; border-color:#c0c0c0;" width="100%" cellpadding="4">
<tr style="border-bottom:1px solid black; background:#fffff0"><th>Name</th><th>Type</th><th>Default</th><th>Restrictions</th><th>Description</th></tr>
<tr>
<td style="vertical-align:top"><i>fit_algorithm</i></td>
<td style="vertical-align:top">string</td><td style="vertical-align:top">simple</td>
<td style="vertical-align:top">simple, simplest, wavelet</td><td style="vertical-align:top">Fitting algorithm type (internal parameter).</td>
</tr>
<tr>
<td style="vertical-align:top"><i>max_iteration</i></td>
<td style="vertical-align:top">int</td><td style="vertical-align:top">500</td>
<td style="vertical-align:top">min: 1</td><td style="vertical-align:top">Maximum number of iterations for fitting with Levenberg-Marquardt algorithm.</td>
</tr>
<tr>
<td style="vertical-align:top"><i>deltaAbsError</i></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">0.0001</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">Absolute error used by the Levenberg-Marquardt algorithm.</td>
</tr>
<tr>
<td style="vertical-align:top"><i>deltaRelError</i></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">0.0001</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">Relative error used by the Levenberg-Marquardt algorithm.</td>
</tr>
<tr>
<td style="vertical-align:top"><i>tolerance_stdev_bounding_box</i></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">3</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">Bounding box has range [minimim of data, maximum of data] enlarged by tolerance_stdev_bounding_box times the standard deviation of the data</td>
</tr>
<tr>
<td style="vertical-align:top"><b>intensity_cutoff_factor</b></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">0.0500000007450581</td>
<td style="vertical-align:top">min: 0 max: 1</td><td style="vertical-align:top">Cutoff peaks with a predicted intensity below intensity_cutoff_factor times the maximal intensity of the model</td>
</tr>
<tr>
<td style="vertical-align:top"><i>feature_intensity_sum</i></td>
<td style="vertical-align:top">int</td><td style="vertical-align:top">1</td>
<td style="vertical-align:top">min: 0 max: 1</td><td style="vertical-align:top">Determines what is reported as feature intensity.<BR>1: the sum of peak intensities;<BR>0: the maximum intensity of all peaks</td>
</tr>
<tr>
<td style="vertical-align:top"><b><span title="Required number of peaks for a feature.">min_num_peaks</span>:final</b></td>
<td style="vertical-align:top">int</td><td style="vertical-align:top">5</td>
<td style="vertical-align:top">min: 1</td><td style="vertical-align:top">Minimum number of peaks left after cutoff. If smaller, feature will be discarded.</td>
</tr>
<tr>
<td style="vertical-align:top"><b><span title="Required number of peaks for a feature.">min_num_peaks</span>:extended</b></td>
<td style="vertical-align:top">int</td><td style="vertical-align:top">10</td>
<td style="vertical-align:top">min: 1</td><td style="vertical-align:top">Minimum number of peaks after extension. If smaller, feature will be discarded.</td>
</tr>
<tr>
<td style="vertical-align:top"><b><span title="Model settings in RT dimension.">rt</span>:interpolation_step</b></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">0.200000002980232</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">Step size in seconds used to interpolate model for RT.</td>
</tr>
<tr>
<td style="vertical-align:top"><b><span title="Model settings in m/z dimension.">mz</span>:interpolation_step</b></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">0.0299999993294477</td>
<td style="vertical-align:top">min: 0.001</td><td style="vertical-align:top">Interpolation step size for m/z.</td>
</tr>
<tr>
<td style="vertical-align:top"><b><span title="Model settings in m/z dimension.">mz</span>:model_type:first</b></td>
<td style="vertical-align:top">int</td><td style="vertical-align:top">1</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">Numeric id of first m/z model fitted (usually indicating the charge state), 0 = no isotope pattern (fit a single gaussian).</td>
</tr>
<tr>
<td style="vertical-align:top"><b><span title="Model settings in m/z dimension.">mz</span>:model_type:last</b></td>
<td style="vertical-align:top">int</td><td style="vertical-align:top">4</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">Numeric id of last m/z model fitted (usually indicating the charge state), 0 = no isotope pattern (fit a single gaussian).</td>
</tr>
<tr>
<td style="vertical-align:top"><i><span title="Fitting quality settings.">quality</span>:type</i></td>
<td style="vertical-align:top">string</td><td style="vertical-align:top">Correlation</td>
<td style="vertical-align:top">Correlation, RankCorrelation</td><td style="vertical-align:top">Type of the quality measure used to assess the fit of model vs data.</td>
</tr>
<tr>
<td style="vertical-align:top"><b><span title="Fitting quality settings.">quality</span>:minimum</b></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">0.649999976158142</td>
<td style="vertical-align:top">min: 0 max: 1</td><td style="vertical-align:top">Minimum quality of fit, features below this threshold are discarded.</td>
</tr>
<tr>
<td style="vertical-align:top"><b><span title="Settings of the isotope model (m/z).">isotope_model</span>:<span title="Instrument resolution settings for m/z dimension.">stdev</span>:first</b></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">0.0399999991059303</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">First standard deviation to be considered for isotope model.</td>
</tr>
<tr>
<td style="vertical-align:top"><b><span title="Settings of the isotope model (m/z).">isotope_model</span>:<span title="Instrument resolution settings for m/z dimension.">stdev</span>:last</b></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">0.119999997317791</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">Last standard deviation to be considered for isotope model.</td>
</tr>
<tr>
<td style="vertical-align:top"><b><span title="Settings of the isotope model (m/z).">isotope_model</span>:<span title="Instrument resolution settings for m/z dimension.">stdev</span>:step</b></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">0.0399999991059303</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">Step size for standard deviations considered for isotope model.</td>
</tr>
<tr>
<td style="vertical-align:top"><i><span title="Settings of the isotope model (m/z).">isotope_model</span>:<span title="Averagines are used to approximate the number of atoms (C,H,N,O,S) which a peptide of a given mass contains.">averagines</span>:C</i></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">0.0444398894906044</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">Number of C atoms per Dalton of the mass.</td>
</tr>
<tr>
<td style="vertical-align:top"><i><span title="Settings of the isotope model (m/z).">isotope_model</span>:<span title="Averagines are used to approximate the number of atoms (C,H,N,O,S) which a peptide of a given mass contains.">averagines</span>:H</i></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">0.0698157176375389</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">Number of H atoms per Dalton of the mass.</td>
</tr>
<tr>
<td style="vertical-align:top"><i><span title="Settings of the isotope model (m/z).">isotope_model</span>:<span title="Averagines are used to approximate the number of atoms (C,H,N,O,S) which a peptide of a given mass contains.">averagines</span>:N</i></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">0.0122177302837372</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">Number of N atoms per Dalton of the mass.</td>
</tr>
<tr>
<td style="vertical-align:top"><i><span title="Settings of the isotope model (m/z).">isotope_model</span>:<span title="Averagines are used to approximate the number of atoms (C,H,N,O,S) which a peptide of a given mass contains.">averagines</span>:O</i></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">0.0132939899340272</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">Number of O atoms per Dalton of the mass.</td>
</tr>
<tr>
<td style="vertical-align:top"><i><span title="Settings of the isotope model (m/z).">isotope_model</span>:<span title="Averagines are used to approximate the number of atoms (C,H,N,O,S) which a peptide of a given mass contains.">averagines</span>:S</i></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">0.000375250005163252</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">Number of S atoms per Dalton of the mass.</td>
</tr>
<tr>
<td style="vertical-align:top"><i><span title="Settings of the isotope model (m/z).">isotope_model</span>:isotope:trim_right_cutoff</i></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">0.00100000004749745</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">Cutoff for averagine distribution, trailing isotopes below this relative intensity are not considered.</td>
</tr>
<tr>
<td style="vertical-align:top"><i><span title="Settings of the isotope model (m/z).">isotope_model</span>:isotope:maximum</i></td>
<td style="vertical-align:top">int</td><td style="vertical-align:top">100</td>
<td style="vertical-align:top">min: 1</td><td style="vertical-align:top">Maximum number of isotopes being used for the IsotopeModel.</td>
</tr>
<tr>
<td style="vertical-align:top"><i><span title="Settings of the isotope model (m/z).">isotope_model</span>:isotope:distance</i></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">1.00049495697021</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">Distance between consecutive isotopic peaks.</td>
</tr>
</table>
<br>
<b>Note:</b>
<UL style="margin-top:0px;">
<LI> If a section name is documented, the documentation is displayed as tooltip.
<LI> Advanced parameter names are italic.
</UL>
</div><h2 class="groupheader">Member Typedef Documentation</h2>
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<td class="memname">typedef <a class="el" href="classOpenMS_1_1FeaFiModule.html">FeaFiModule</a><<a class="el" href="namespaceOpenMS.html#a013338b7bdbb5c3b4c78666656070e23">PeakType</a>, FeatureType> <a class="el" href="classOpenMS_1_1ModelFitter.html#a79ea228cdc8755284e64dd9f625170a3">Base</a></td>
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<p><a class="el" href="classOpenMS_1_1FeaFiModule.html" title="Implements a module of the FeatureFinder algorithm. ">FeaFiModule</a>. </p>
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<td class="memname">typedef <a class="el" href="classOpenMS_1_1BaseFeature.html#a87171116869a9f9511d7ce9ad7baf5d6">Feature::ChargeType</a> <a class="el" href="classOpenMS_1_1ModelFitter.html#a9f65527757d7146ea4eabbb506c9a646">ChargeType</a></td>
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<p>Isotope charge. </p>
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<td class="memname">typedef Feature::CoordinateType <a class="el" href="classOpenMS_1_1FeaFiModule.html#a181486a43da338e31f089df7661f50bb">CoordinateType</a></td>
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<p>Single coordinate. </p>
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<td class="memname">typedef IndexSet::const_iterator <a class="el" href="classOpenMS_1_1ModelFitter.html#adc75bbd0ca620523daf2e796efdd1cdf">IndexSetIter</a></td>
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<p>IndexSet iterator. </p>
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<td class="memname">typedef <a class="el" href="classOpenMS_1_1Peak2D.html#a4a8c5b2adc05e9ff96a007385bfe9b47">Feature::IntensityType</a> <a class="el" href="classOpenMS_1_1FeaFiModule.html#a221361082f641c3fccc58e9bc66aeee1">IntensityType</a></td>
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<p>Single intensity. </p>
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<td class="memname">typedef <a class="el" href="classOpenMS_1_1BaseFeature.html#a8ca1d75ff489493f4458fa7137186089">Feature::QualityType</a> <a class="el" href="classOpenMS_1_1ModelFitter.html#a5226d265fd03c7b41e9945248d241af1">QualityType</a></td>
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<p>Quality of a feature. </p>
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<td class="memname">typedef std::vector<<a class="el" href="namespaceOpenMS.html#a013338b7bdbb5c3b4c78666656070e23">PeakType</a>> <a class="el" href="classOpenMS_1_1ModelFitter.html#a31ac7361125f91f71e3d07be39a76023">RawDataArrayType</a></td>
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<p>Raw data container type using for the temporary storage of the input data. </p>
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<h2 class="groupheader">Member Enumeration Documentation</h2>
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<td class="memname">anonymous enum</td>
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<tr><th colspan="2">Enumerator</th></tr><tr><td class="fieldname"><em><a class="anchor" id="a6b7b47dd702d9e331586d485013fd1eaaf388fcb6d444ef59841ef549ca6ee0da"></a>RT</em> </td><td class="fielddoc">
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<tr><td class="fieldname"><em><a class="anchor" id="a6b7b47dd702d9e331586d485013fd1eaa35008b046ec2687e53152082281d0867"></a>MZ</em> </td><td class="fielddoc">
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<h2 class="groupheader">Constructor & Destructor Documentation</h2>
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<td class="memname"><a class="el" href="classOpenMS_1_1ModelFitter.html">ModelFitter</a> </td>
<td>(</td>
<td class="paramtype">const <a class="el" href="classOpenMS_1_1MSExperiment.html">MSExperiment</a>< <a class="el" href="namespaceOpenMS.html#a013338b7bdbb5c3b4c78666656070e23">PeakType</a> > * </td>
<td class="paramname"><em>map</em>, </td>
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<td class="paramtype"><a class="el" href="classOpenMS_1_1FeatureMap.html">FeatureMap</a>< FeatureType > * </td>
<td class="paramname"><em>features</em>, </td>
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<td class="paramtype"><a class="el" href="classOpenMS_1_1FeatureFinder.html">FeatureFinder</a> * </td>
<td class="paramname"><em>ff</em> </td>
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<p>Constructor. </p>
<p>References <a class="el" href="classOpenMS_1_1StringList.html#a5f86b59b547048311dd50df5fb6d3bb5">StringList::create()</a>, <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a761b1937850c141d0c6fff0e4d633a04">DefaultParamHandler::defaults_</a>, <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a2802c591e6d7fd3fd9cc35f5e875d0ba">DefaultParamHandler::defaultsToParam_()</a>, <a class="el" href="classOpenMS_1_1Param.html#a6b40506fffbae670045d065c354bb9b8">Param::setMaxFloat()</a>, <a class="el" href="classOpenMS_1_1Param.html#a37de948351467fdccb9d12f601dc8205">Param::setMaxInt()</a>, <a class="el" href="classOpenMS_1_1Param.html#aadc7a8536eb15f8c6fa05eefca0e25be">Param::setMinFloat()</a>, <a class="el" href="classOpenMS_1_1Param.html#a3a23089ec40eeed796efe7b69ecb02ac">Param::setMinInt()</a>, <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a77d37f2e1c12e8bd33ea0e660a89e927">DefaultParamHandler::setName()</a>, <a class="el" href="classOpenMS_1_1Param.html#a7dae78ea20f5b33125f50c6ee27b1a60">Param::setSectionDescription()</a>, <a class="el" href="classOpenMS_1_1Param.html#a10933782584a46cded91c40574027ee2">Param::setValidStrings()</a>, and <a class="el" href="classOpenMS_1_1Param.html#a432099944e11263aa20aaf8ea1389790">Param::setValue()</a>.</p>
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<td class="memname">virtual ~<a class="el" href="classOpenMS_1_1ModelFitter.html">ModelFitter</a> </td>
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<p>Destructor. </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1ModelFitter.html">ModelFitter</a> </td>
<td>(</td>
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<p>Not implemented. </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1ModelFitter.html">ModelFitter</a> </td>
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<td class="paramtype">const <a class="el" href="classOpenMS_1_1ModelFitter.html">ModelFitter</a>< <a class="el" href="namespaceOpenMS.html#a013338b7bdbb5c3b4c78666656070e23">PeakType</a>, FeatureType > & </td>
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<p>Not implemented. </p>
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<h2 class="groupheader">Member Function Documentation</h2>
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<td class="memname">void doProjectionDim_ </td>
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<td class="paramtype">const <a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> </td>
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<td class="paramtype"><a class="el" href="classOpenMS_1_1ModelFitter.html#a31ac7361125f91f71e3d07be39a76023">RawDataArrayType</a> & </td>
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<p>Project the raw data into 1-dim array. </p>
<p>References <a class="el" href="classOpenMS_1_1ModelFitter.html#ac230d1bc572fc770f8e254d4f06088cb">ModelFitter< PeakType, FeatureType >::algorithm_</a>, <a class="el" href="classOpenMS_1_1FeaFiModule.html#a4698fa90bfbdd5729e0e25c62345ff0d">FeaFiModule< PeakType, FeatureType >::getPeakIntensity()</a>, <a class="el" href="classOpenMS_1_1FeaFiModule.html#a606049d47faacd506705556d333849a2">FeaFiModule< PeakType, FeatureType >::getPeakMz()</a>, <a class="el" href="classOpenMS_1_1FeaFiModule.html#a8e5564d7b686645a7d7d6f5aed8cd494">FeaFiModule< PeakType, FeatureType >::getPeakRt()</a>, and <a class="el" href="classOpenMS_1_1ModelFitter.html#a6b7b47dd702d9e331586d485013fd1eaa35008b046ec2687e53152082281d0867">ModelFitter< PeakType, FeatureType >::MZ</a>.</p>
<p>Referenced by <a class="el" href="classOpenMS_1_1ModelFitter.html#a9a599157dfa0c832cf50f5596342c73e">ModelFitter< PeakType, FeatureType >::fit()</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1ModelFitter.html#a5226d265fd03c7b41e9945248d241af1">QualityType</a> evaluate_ </td>
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<td class="paramtype">const <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#af7439235b89a75354a2e87350e36834f">IndexSet</a> & </td>
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<p>evaluate 2d-model </p>
<p>References <a class="el" href="classOpenMS_1_1ModelFitter.html#ac230d1bc572fc770f8e254d4f06088cb">ModelFitter< PeakType, FeatureType >::algorithm_</a>, <a class="el" href="classOpenMS_1_1ProductModel_3_012_01_4.html#ac4534e8323ba5dc157bc4bba75096d50">ProductModel< 2 >::getIntensity()</a>, <a class="el" href="classOpenMS_1_1FeaFiModule.html#a4698fa90bfbdd5729e0e25c62345ff0d">FeaFiModule< PeakType, FeatureType >::getPeakIntensity()</a>, <a class="el" href="classOpenMS_1_1FeaFiModule.html#a606049d47faacd506705556d333849a2">FeaFiModule< PeakType, FeatureType >::getPeakMz()</a>, <a class="el" href="classOpenMS_1_1Param.html#abd0f5571675ec99e1aa647b39e2a8711">Param::getValue()</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a9e7780ed6d3446aebf9ba5ccf1bb9574">ModelFitter< PeakType, FeatureType >::model2D_</a>, <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a28c73e623c63a4fe3bfceb1ae8274f39">DefaultParamHandler::param_</a>, <a class="el" href="group__MathFunctionsStatistics.html#gac7a454e1847d508ba6635d47f49fbe8c">OpenMS::Math::pearsonCorrelationCoefficient()</a>, and <a class="el" href="group__MathFunctionsStatistics.html#ga67443c0e3d0ee860daf4f6f1e371ce2c">OpenMS::Math::rankCorrelationCoefficient()</a>.</p>
<p>Referenced by <a class="el" href="classOpenMS_1_1ModelFitter.html#aa08948a609e0be02a55895209d3d77a9">ModelFitter< PeakType, FeatureType >::fitMZLoop_()</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1Feature.html">Feature</a> fit </td>
<td>(</td>
<td class="paramtype">const <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#af01a99958d0b18999737158daf8820ac">ChargedIndexSet</a> & </td>
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<p>Return next feature. </p>
<dl class="exception"><dt>Exceptions</dt><dd>
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<tr><td class="paramname"><a class="el" href="classOpenMS_1_1Exception_1_1InvalidParameter.html" title="Exception indicating that an invalid parameter was handed over to an algorithm. ">Exception::InvalidParameter</a></td><td>if first and last charge to test do not define a range (first<=last) </td></tr>
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<p>References <a class="el" href="classOpenMS_1_1FeaFiModule.html#ac641d17ba54cde66c331d17bdee355e8">FeaFiModule< PeakType, FeatureType >::addConvexHull()</a>, <a class="el" href="structOpenMS_1_1IsotopeCluster_1_1ChargedIndexSet.html#a8253a7962ca1c79b71e6af96589b7720">IsotopeCluster::ChargedIndexSet::charge</a>, <a class="el" href="classOpenMS_1_1ModelDescription.html#a3f962855dbc9bbf8074f4306cb9c1a7b">ModelDescription< D >::createModel()</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a9e49d9564896fee1216a006f907d139d">ModelFitter< PeakType, FeatureType >::doProjectionDim_()</a>, <a class="el" href="classOpenMS_1_1Feature.html#a57c4a49592647cc2db0dc517ed9a1a02">Feature::encloses()</a>, <a class="el" href="classOpenMS_1_1FeaFiModule.html#adf68cb378c76b322b2cc4dbb2c145a3e">FeaFiModule< PeakType, FeatureType >::ff_</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a9f3a5a09e281e06e938ab4ba54154aae">ModelFitter< PeakType, FeatureType >::first_mz_model_</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#aa08948a609e0be02a55895209d3d77a9">ModelFitter< PeakType, FeatureType >::fitMZLoop_()</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a5e69531f4b15948d57b30909fdba0cb4">ModelFitter< PeakType, FeatureType >::fitRT_()</a>, <a class="el" href="classOpenMS_1_1ConvexHull2D.html#a88c6186ce22fc5eae73df90899695229">ConvexHull2D::getBoundingBox()</a>, <a class="el" href="classOpenMS_1_1BaseFeature.html#ac80a487ac41c375532f8bff16871ae15">BaseFeature::getCharge()</a>, <a class="el" href="classOpenMS_1_1Feature.html#ab071fe5bd7b2f969e4f9ed5d7467da1e">Feature::getConvexHull()</a>, <a class="el" href="classOpenMS_1_1ProductModel_3_012_01_4.html#ac4534e8323ba5dc157bc4bba75096d50">ProductModel< 2 >::getIntensity()</a>, <a class="el" href="classOpenMS_1_1ProductModel_3_012_01_4.html#a5a40666cbd449e6dab1270ef7153f490">ProductModel< 2 >::getModel()</a>, <a class="el" href="classOpenMS_1_1Feature.html#a94eabbe00bbab2a589688631c807005e">Feature::getModelDescription()</a>, <a class="el" href="classOpenMS_1_1Peak2D.html#a6fefef82aae7a3208e71648e763d5ea4">Peak2D::getMZ()</a>, <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#aaee0f2845288173de9f6ad47e6ad31d5">DefaultParamHandler::getName()</a>, <a class="el" href="classOpenMS_1_1Feature.html#a0adf747960bee685e34bfbbe57a7089b">Feature::getOverallQuality()</a>, <a class="el" href="classOpenMS_1_1FeatureFinder.html#a91adbb58dfeb79d2b5d78c1047f406c9">FeatureFinder::getPeakFlag()</a>, <a class="el" href="classOpenMS_1_1FeaFiModule.html#a4698fa90bfbdd5729e0e25c62345ff0d">FeaFiModule< PeakType, FeatureType >::getPeakIntensity()</a>, <a class="el" href="classOpenMS_1_1FeaFiModule.html#a606049d47faacd506705556d333849a2">FeaFiModule< PeakType, FeatureType >::getPeakMz()</a>, <a class="el" href="classOpenMS_1_1FeaFiModule.html#a8e5564d7b686645a7d7d6f5aed8cd494">FeaFiModule< PeakType, FeatureType >::getPeakRt()</a>, <a class="el" href="classOpenMS_1_1Feature.html#a1ad0c0f264440b15c5d699f3845b8ad7">Feature::getQuality()</a>, <a class="el" href="classOpenMS_1_1Peak2D.html#ab4e0f356f837ce58e57695da114adce3">Peak2D::getRT()</a>, <a class="el" href="classOpenMS_1_1Feature.html#aaa5e4ac166de2cd5d3e38ccb4157bd77">Feature::getSubordinates()</a>, <a class="el" href="classOpenMS_1_1Param.html#abd0f5571675ec99e1aa647b39e2a8711">Param::getValue()</a>, <a class="el" href="classOpenMS_1_1BaseModel.html#aca183c4ace75384f91bc04579eada9bc">BaseModel< D >::isContained()</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a966741575418441aef18050ea04b8519">ModelFitter< PeakType, FeatureType >::last_mz_model_</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a9e7780ed6d3446aebf9ba5ccf1bb9574">ModelFitter< PeakType, FeatureType >::model2D_</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a6b7b47dd702d9e331586d485013fd1eaa35008b046ec2687e53152082281d0867">ModelFitter< PeakType, FeatureType >::MZ</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#ad1dd87342de3593f23630e645f995d1f">ModelFitter< PeakType, FeatureType >::mz_input_data_</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#ab30d394914362ab0b7a8918133eec401">ModelFitter< PeakType, FeatureType >::mz_stat_</a>, <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a28c73e623c63a4fe3bfceb1ae8274f39">DefaultParamHandler::param_</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#afe69329d6075fc44aba749ead1fe6a8b">ModelFitter< PeakType, FeatureType >::quality_mz_</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#ad14e23949d04910624b46731e5268fb5">ModelFitter< PeakType, FeatureType >::quality_rt_</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a6b7b47dd702d9e331586d485013fd1eaaf388fcb6d444ef59841ef549ca6ee0da">ModelFitter< PeakType, FeatureType >::RT</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a100b9653d9495c862bc57cee3dcdbb3f">ModelFitter< PeakType, FeatureType >::rt_input_data_</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a3c4dee13554dda34293916d83f811aaa">ModelFitter< PeakType, FeatureType >::rt_stat_</a>, <a class="el" href="classOpenMS_1_1BaseFeature.html#ab595724fe9b9eb5d37011f07d90b9e0b">BaseFeature::setCharge()</a>, <a class="el" href="classOpenMS_1_1BaseModel.html#a464bd13b1e846ea0bc7bb0632f8e7256">BaseModel< D >::setCutOff()</a>, <a class="el" href="classOpenMS_1_1Peak2D.html#ab875c2479c6cd2a0189e4684bfa4f97d">Peak2D::setIntensity()</a>, <a class="el" href="classOpenMS_1_1MetaInfoInterface.html#a135a7e818125b31198a8a65d9ac7a3d1">MetaInfoInterface::setMetaValue()</a>, <a class="el" href="classOpenMS_1_1ProductModel_3_012_01_4.html#a8cd14764d47842020930ef7023a2d912">ProductModel< 2 >::setModel()</a>, <a class="el" href="classOpenMS_1_1Feature.html#a59f31f35e2e4a45316651cebbb358a1d">Feature::setModelDescription()</a>, <a class="el" href="classOpenMS_1_1Peak2D.html#a2694f0775c46d9076355cb85d9815425">Peak2D::setMZ()</a>, <a class="el" href="classOpenMS_1_1Feature.html#aeba0cded976431f70fbea5499218ce18">Feature::setOverallQuality()</a>, <a class="el" href="classOpenMS_1_1Feature.html#a93cd3fc199fc903768e3b8d7fafaeb95">Feature::setQuality()</a>, <a class="el" href="classOpenMS_1_1Peak2D.html#a396c5ebcac2e70f9b9a478bb2456985b">Peak2D::setRT()</a>, <a class="el" href="classOpenMS_1_1ProductModel_3_012_01_4.html#a6f73a9c8459a5cc55dada279e525437e">ProductModel< 2 >::setScale()</a>, <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#a3f3de3e0d751949b8d0b60ffb302944aaa09b651ef326a9d8efcee5cc5b720ab4">FeatureFinderDefs::UNUSED</a>, <a class="el" href="classOpenMS_1_1Math_1_1AsymmetricStatistics.html#a74998f835798420ad045536c0c2a3106">AsymmetricStatistics< Real >::update()</a>, and <a class="el" href="classOpenMS_1_1Math_1_1BasicStatistics.html#a6068425aeb34eec009695897d0408453">BasicStatistics< RealT >::update()</a>.</p>
<p>Referenced by <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimplest.html#a72fcb26a14f6beb1c3fbace9ab3e7dbb">FeatureFinderAlgorithmSimplest< PeakType, FeatureType >::run()</a>, and <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimple.html#a72fcb26a14f6beb1c3fbace9ab3e7dbb">FeatureFinderAlgorithmSimple< PeakType, FeatureType >::run()</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1ModelFitter.html#a5226d265fd03c7b41e9945248d241af1">QualityType</a> fitMZ_ </td>
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<td class="paramtype"><a class="el" href="classOpenMS_1_1InterpolationModel.html">InterpolationModel</a> *& </td>
<td class="paramname"><em>model</em>, </td>
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<p>1d fit in MZ </p>
<p>References <a class="el" href="classOpenMS_1_1ModelFitter.html#ac230d1bc572fc770f8e254d4f06088cb">ModelFitter< PeakType, FeatureType >::algorithm_</a>, <a class="el" href="classOpenMS_1_1Factory.html#a4cfac1ac1b4ac63d3b169291ac8019ed">Factory< FactoryProduct >::create()</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a29677fd7ae2cbf6f04964da70997b4d6">ModelFitter< PeakType, FeatureType >::deltaAbsError_</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#aae802b51d6efd35a1378b228f4f40770">ModelFitter< PeakType, FeatureType >::deltaRelError_</a>, <a class="el" href="classOpenMS_1_1Fitter1D.html#a78595664bcabdc63cf91fd338883d309">Fitter1D::fit1d()</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a5cf51152410c3773eeb23c45f288986c">ModelFitter< PeakType, FeatureType >::interpolation_step_mz_</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a141bcda36021c50ea1e95a234e9aacff">ModelFitter< PeakType, FeatureType >::isotope_stdev_</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#ae29ab2ec7ad095c17fd97d56d4501c1c">ModelFitter< PeakType, FeatureType >::max_isotope_</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a65156c6922b9524db057849c1d14cd56">ModelFitter< PeakType, FeatureType >::max_iteration_</a>, <a class="el" href="classOpenMS_1_1Math_1_1BasicStatistics.html#af6efe0afdae7cbb85a5ac3bed200c048">BasicStatistics< RealT >::mean()</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a26fe6c8385c2f47cc989960b4826c0bd">ModelFitter< PeakType, FeatureType >::monoisotopic_mz_</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#ad1dd87342de3593f23630e645f995d1f">ModelFitter< PeakType, FeatureType >::mz_input_data_</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#ab30d394914362ab0b7a8918133eec401">ModelFitter< PeakType, FeatureType >::mz_stat_</a>, <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#abc8067511cfc949ae942ea2b08588f81">DefaultParamHandler::setParameters()</a>, <a class="el" href="classOpenMS_1_1Param.html#a432099944e11263aa20aaf8ea1389790">Param::setValue()</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a550aafc7c40f4722708edca5488f5b6b">ModelFitter< PeakType, FeatureType >::tolerance_stdev_box_</a>, and <a class="el" href="classOpenMS_1_1Math_1_1BasicStatistics.html#a620e83f1ef3e206cacdacb1293677e05">BasicStatistics< RealT >::variance()</a>.</p>
<p>Referenced by <a class="el" href="classOpenMS_1_1ModelFitter.html#aa08948a609e0be02a55895209d3d77a9">ModelFitter< PeakType, FeatureType >::fitMZLoop_()</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1ModelFitter.html#a5226d265fd03c7b41e9945248d241af1">QualityType</a> fitMZLoop_ </td>
<td>(</td>
<td class="paramtype">const <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#af01a99958d0b18999737158daf8820ac">ChargedIndexSet</a> & </td>
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<p>main fit loop </p>
<p>References <a class="el" href="classOpenMS_1_1ModelFitter.html#a520ad36c37273100004a5dca3c2a6c24">ModelFitter< PeakType, FeatureType >::evaluate_()</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a4e1ed92e7c5c8f3b4db0378a122ef3b1">ModelFitter< PeakType, FeatureType >::fitMZ_()</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#abfeee1372fcfb6bea261621d9f553e3d">ModelFitter< PeakType, FeatureType >::iso_stdev_first_</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a61031e41af78cf1ff1d097717b27faaa">ModelFitter< PeakType, FeatureType >::iso_stdev_last_</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a929a8e237da6180773aa965601894c60">ModelFitter< PeakType, FeatureType >::iso_stdev_stepsize_</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a141bcda36021c50ea1e95a234e9aacff">ModelFitter< PeakType, FeatureType >::isotope_stdev_</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a9e7780ed6d3446aebf9ba5ccf1bb9574">ModelFitter< PeakType, FeatureType >::model2D_</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a6b7b47dd702d9e331586d485013fd1eaa35008b046ec2687e53152082281d0867">ModelFitter< PeakType, FeatureType >::MZ</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#afe69329d6075fc44aba749ead1fe6a8b">ModelFitter< PeakType, FeatureType >::quality_mz_</a>, and <a class="el" href="classOpenMS_1_1ProductModel_3_012_01_4.html#a8cd14764d47842020930ef7023a2d912">ProductModel< 2 >::setModel()</a>.</p>
<p>Referenced by <a class="el" href="classOpenMS_1_1ModelFitter.html#a9a599157dfa0c832cf50f5596342c73e">ModelFitter< PeakType, FeatureType >::fit()</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1ModelFitter.html#a5226d265fd03c7b41e9945248d241af1">QualityType</a> fitRT_ </td>
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<p>1d fit in RT </p>
<p>References <a class="el" href="classOpenMS_1_1ModelFitter.html#ac230d1bc572fc770f8e254d4f06088cb">ModelFitter< PeakType, FeatureType >::algorithm_</a>, <a class="el" href="classOpenMS_1_1Factory.html#a4cfac1ac1b4ac63d3b169291ac8019ed">Factory< FactoryProduct >::create()</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a29677fd7ae2cbf6f04964da70997b4d6">ModelFitter< PeakType, FeatureType >::deltaAbsError_</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#aae802b51d6efd35a1378b228f4f40770">ModelFitter< PeakType, FeatureType >::deltaRelError_</a>, <a class="el" href="classOpenMS_1_1Fitter1D.html#a78595664bcabdc63cf91fd338883d309">Fitter1D::fit1d()</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#adf3e31ca2a7272a82a67175153f39f98">ModelFitter< PeakType, FeatureType >::interpolation_step_rt_</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a65156c6922b9524db057849c1d14cd56">ModelFitter< PeakType, FeatureType >::max_iteration_</a>, <a class="el" href="classOpenMS_1_1Math_1_1BasicStatistics.html#af6efe0afdae7cbb85a5ac3bed200c048">BasicStatistics< RealT >::mean()</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a100b9653d9495c862bc57cee3dcdbb3f">ModelFitter< PeakType, FeatureType >::rt_input_data_</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a3c4dee13554dda34293916d83f811aaa">ModelFitter< PeakType, FeatureType >::rt_stat_</a>, <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#abc8067511cfc949ae942ea2b08588f81">DefaultParamHandler::setParameters()</a>, <a class="el" href="classOpenMS_1_1Param.html#a432099944e11263aa20aaf8ea1389790">Param::setValue()</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a550aafc7c40f4722708edca5488f5b6b">ModelFitter< PeakType, FeatureType >::tolerance_stdev_box_</a>, <a class="el" href="classOpenMS_1_1Math_1_1BasicStatistics.html#a620e83f1ef3e206cacdacb1293677e05">BasicStatistics< RealT >::variance()</a>, <a class="el" href="classOpenMS_1_1Math_1_1AsymmetricStatistics.html#ad7008a00da75aa4248c4f6076f1dc58c">AsymmetricStatistics< Real >::variance1()</a>, and <a class="el" href="classOpenMS_1_1Math_1_1AsymmetricStatistics.html#af5dad3b7af1fd39433b75414fed36f2c">AsymmetricStatistics< Real >::variance2()</a>.</p>
<p>Referenced by <a class="el" href="classOpenMS_1_1ModelFitter.html#a9a599157dfa0c832cf50f5596342c73e">ModelFitter< PeakType, FeatureType >::fit()</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1ModelFitter.html">ModelFitter</a>& operator= </td>
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<p>Not implemented. </p>
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<td class="memname">void setMonoIsotopicMass </td>
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<p>Sets or fixed the monoisotopic m/z at a specific position. </p>
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<p>References <a class="el" href="classOpenMS_1_1ModelFitter.html#a26fe6c8385c2f47cc989960b4826c0bd">ModelFitter< PeakType, FeatureType >::monoisotopic_mz_</a>.</p>
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<td class="memname">virtual void updateMembers_ </td>
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<p>This method is used to update extra member variables at the end of the <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#abc8067511cfc949ae942ea2b08588f81" title="Sets the parameters. ">setParameters()</a> method. </p>
<p>Also call it at the end of the derived classes' copy constructor and assignment operator.</p>
<p>The default implementation is empty. </p>
<p>Reimplemented from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a776f7572fc4f466e9527ca233471920d">DefaultParamHandler</a>.</p>
<p>References <a class="el" href="classOpenMS_1_1ModelFitter.html#ac230d1bc572fc770f8e254d4f06088cb">ModelFitter< PeakType, FeatureType >::algorithm_</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a29677fd7ae2cbf6f04964da70997b4d6">ModelFitter< PeakType, FeatureType >::deltaAbsError_</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#aae802b51d6efd35a1378b228f4f40770">ModelFitter< PeakType, FeatureType >::deltaRelError_</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a9f3a5a09e281e06e938ab4ba54154aae">ModelFitter< PeakType, FeatureType >::first_mz_model_</a>, <a class="el" href="classOpenMS_1_1Param.html#abd0f5571675ec99e1aa647b39e2a8711">Param::getValue()</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a5cf51152410c3773eeb23c45f288986c">ModelFitter< PeakType, FeatureType >::interpolation_step_mz_</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#adf3e31ca2a7272a82a67175153f39f98">ModelFitter< PeakType, FeatureType >::interpolation_step_rt_</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#abfeee1372fcfb6bea261621d9f553e3d">ModelFitter< PeakType, FeatureType >::iso_stdev_first_</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a61031e41af78cf1ff1d097717b27faaa">ModelFitter< PeakType, FeatureType >::iso_stdev_last_</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a929a8e237da6180773aa965601894c60">ModelFitter< PeakType, FeatureType >::iso_stdev_stepsize_</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a966741575418441aef18050ea04b8519">ModelFitter< PeakType, FeatureType >::last_mz_model_</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#ae29ab2ec7ad095c17fd97d56d4501c1c">ModelFitter< PeakType, FeatureType >::max_isotope_</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a65156c6922b9524db057849c1d14cd56">ModelFitter< PeakType, FeatureType >::max_iteration_</a>, <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a28c73e623c63a4fe3bfceb1ae8274f39">DefaultParamHandler::param_</a>, and <a class="el" href="classOpenMS_1_1ModelFitter.html#a550aafc7c40f4722708edca5488f5b6b">ModelFitter< PeakType, FeatureType >::tolerance_stdev_box_</a>.</p>
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<h2 class="groupheader">Member Data Documentation</h2>
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<td class="memname"><a class="el" href="classOpenMS_1_1String.html">String</a> algorithm_</td>
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<p>algorithm </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1ModelFitter.html#a9e49d9564896fee1216a006f907d139d">ModelFitter< PeakType, FeatureType >::doProjectionDim_()</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a520ad36c37273100004a5dca3c2a6c24">ModelFitter< PeakType, FeatureType >::evaluate_()</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a4e1ed92e7c5c8f3b4db0378a122ef3b1">ModelFitter< PeakType, FeatureType >::fitMZ_()</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a5e69531f4b15948d57b30909fdba0cb4">ModelFitter< PeakType, FeatureType >::fitRT_()</a>, and <a class="el" href="classOpenMS_1_1ModelFitter.html#a776f7572fc4f466e9527ca233471920d">ModelFitter< PeakType, FeatureType >::updateMembers_()</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1Math_1_1BasicStatistics.html">Math::BasicStatistics</a> basic_stat_</td>
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<p>statistics </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a181486a43da338e31f089df7661f50bb">CoordinateType</a> deltaAbsError_</td>
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<p>Absolute error. </p>
<p>Test for the convergence of the sequence by comparing the last iteration step dx with the absolute error epsabs and relative error epsrel to the current position x </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1ModelFitter.html#a4e1ed92e7c5c8f3b4db0378a122ef3b1">ModelFitter< PeakType, FeatureType >::fitMZ_()</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a5e69531f4b15948d57b30909fdba0cb4">ModelFitter< PeakType, FeatureType >::fitRT_()</a>, and <a class="el" href="classOpenMS_1_1ModelFitter.html#a776f7572fc4f466e9527ca233471920d">ModelFitter< PeakType, FeatureType >::updateMembers_()</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a181486a43da338e31f089df7661f50bb">CoordinateType</a> deltaRelError_</td>
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<p>Relative error. </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1ModelFitter.html#a4e1ed92e7c5c8f3b4db0378a122ef3b1">ModelFitter< PeakType, FeatureType >::fitMZ_()</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a5e69531f4b15948d57b30909fdba0cb4">ModelFitter< PeakType, FeatureType >::fitRT_()</a>, and <a class="el" href="classOpenMS_1_1ModelFitter.html#a776f7572fc4f466e9527ca233471920d">ModelFitter< PeakType, FeatureType >::updateMembers_()</a>.</p>
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<td class="memname"><a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> first_mz_model_</td>
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<p>first mz model (0=Gaussian, 1....n = charge ) </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1ModelFitter.html#a9a599157dfa0c832cf50f5596342c73e">ModelFitter< PeakType, FeatureType >::fit()</a>, and <a class="el" href="classOpenMS_1_1ModelFitter.html#a776f7572fc4f466e9527ca233471920d">ModelFitter< PeakType, FeatureType >::updateMembers_()</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a181486a43da338e31f089df7661f50bb">CoordinateType</a> interpolation_step_mz_</td>
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<p>interpolation step size (in m/z) </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1ModelFitter.html#a4e1ed92e7c5c8f3b4db0378a122ef3b1">ModelFitter< PeakType, FeatureType >::fitMZ_()</a>, and <a class="el" href="classOpenMS_1_1ModelFitter.html#a776f7572fc4f466e9527ca233471920d">ModelFitter< PeakType, FeatureType >::updateMembers_()</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a181486a43da338e31f089df7661f50bb">CoordinateType</a> interpolation_step_rt_</td>
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<p>interpolation step size (in retention time) </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1ModelFitter.html#a5e69531f4b15948d57b30909fdba0cb4">ModelFitter< PeakType, FeatureType >::fitRT_()</a>, and <a class="el" href="classOpenMS_1_1ModelFitter.html#a776f7572fc4f466e9527ca233471920d">ModelFitter< PeakType, FeatureType >::updateMembers_()</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a181486a43da338e31f089df7661f50bb">CoordinateType</a> iso_stdev_first_</td>
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<p>first stdev </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1ModelFitter.html#aa08948a609e0be02a55895209d3d77a9">ModelFitter< PeakType, FeatureType >::fitMZLoop_()</a>, and <a class="el" href="classOpenMS_1_1ModelFitter.html#a776f7572fc4f466e9527ca233471920d">ModelFitter< PeakType, FeatureType >::updateMembers_()</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a181486a43da338e31f089df7661f50bb">CoordinateType</a> iso_stdev_last_</td>
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<p>last stdev </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1ModelFitter.html#aa08948a609e0be02a55895209d3d77a9">ModelFitter< PeakType, FeatureType >::fitMZLoop_()</a>, and <a class="el" href="classOpenMS_1_1ModelFitter.html#a776f7572fc4f466e9527ca233471920d">ModelFitter< PeakType, FeatureType >::updateMembers_()</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a181486a43da338e31f089df7661f50bb">CoordinateType</a> iso_stdev_stepsize_</td>
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<p>step size </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1ModelFitter.html#aa08948a609e0be02a55895209d3d77a9">ModelFitter< PeakType, FeatureType >::fitMZLoop_()</a>, and <a class="el" href="classOpenMS_1_1ModelFitter.html#a776f7572fc4f466e9527ca233471920d">ModelFitter< PeakType, FeatureType >::updateMembers_()</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a181486a43da338e31f089df7661f50bb">CoordinateType</a> isotope_stdev_</td>
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<p>isotope stdev </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1ModelFitter.html#a4e1ed92e7c5c8f3b4db0378a122ef3b1">ModelFitter< PeakType, FeatureType >::fitMZ_()</a>, and <a class="el" href="classOpenMS_1_1ModelFitter.html#aa08948a609e0be02a55895209d3d77a9">ModelFitter< PeakType, FeatureType >::fitMZLoop_()</a>.</p>
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<td class="memname"><a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> last_mz_model_</td>
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<p>last mz model </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1ModelFitter.html#a9a599157dfa0c832cf50f5596342c73e">ModelFitter< PeakType, FeatureType >::fit()</a>, and <a class="el" href="classOpenMS_1_1ModelFitter.html#a776f7572fc4f466e9527ca233471920d">ModelFitter< PeakType, FeatureType >::updateMembers_()</a>.</p>
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<td class="memname"><a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> max_isotope_</td>
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<p>maximum isotopic rank to be considered </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1ModelFitter.html#a4e1ed92e7c5c8f3b4db0378a122ef3b1">ModelFitter< PeakType, FeatureType >::fitMZ_()</a>, and <a class="el" href="classOpenMS_1_1ModelFitter.html#a776f7572fc4f466e9527ca233471920d">ModelFitter< PeakType, FeatureType >::updateMembers_()</a>.</p>
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<td class="memname"><a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> max_iteration_</td>
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<p>Maximum number of iterations. </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1ModelFitter.html#a4e1ed92e7c5c8f3b4db0378a122ef3b1">ModelFitter< PeakType, FeatureType >::fitMZ_()</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a5e69531f4b15948d57b30909fdba0cb4">ModelFitter< PeakType, FeatureType >::fitRT_()</a>, and <a class="el" href="classOpenMS_1_1ModelFitter.html#a776f7572fc4f466e9527ca233471920d">ModelFitter< PeakType, FeatureType >::updateMembers_()</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1ProductModel.html">ProductModel</a><2> model2D_</td>
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<p>2D model </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1ModelFitter.html#a520ad36c37273100004a5dca3c2a6c24">ModelFitter< PeakType, FeatureType >::evaluate_()</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a9a599157dfa0c832cf50f5596342c73e">ModelFitter< PeakType, FeatureType >::fit()</a>, and <a class="el" href="classOpenMS_1_1ModelFitter.html#aa08948a609e0be02a55895209d3d77a9">ModelFitter< PeakType, FeatureType >::fitMZLoop_()</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a181486a43da338e31f089df7661f50bb">CoordinateType</a> monoisotopic_mz_</td>
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<p>monoistopic mass </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1ModelFitter.html#a4e1ed92e7c5c8f3b4db0378a122ef3b1">ModelFitter< PeakType, FeatureType >::fitMZ_()</a>, and <a class="el" href="classOpenMS_1_1ModelFitter.html#a4aeb5297e8e231a3cc8e6a4f599944b5">ModelFitter< PeakType, FeatureType >::setMonoIsotopicMass()</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1ModelFitter.html#a31ac7361125f91f71e3d07be39a76023">RawDataArrayType</a> mz_input_data_</td>
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<p>mz raw data </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1ModelFitter.html#a9a599157dfa0c832cf50f5596342c73e">ModelFitter< PeakType, FeatureType >::fit()</a>, and <a class="el" href="classOpenMS_1_1ModelFitter.html#a4e1ed92e7c5c8f3b4db0378a122ef3b1">ModelFitter< PeakType, FeatureType >::fitMZ_()</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1Math_1_1BasicStatistics.html">Math::BasicStatistics</a> mz_stat_</td>
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<p>statistics for mz </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1ModelFitter.html#a9a599157dfa0c832cf50f5596342c73e">ModelFitter< PeakType, FeatureType >::fit()</a>, and <a class="el" href="classOpenMS_1_1ModelFitter.html#a4e1ed92e7c5c8f3b4db0378a122ef3b1">ModelFitter< PeakType, FeatureType >::fitMZ_()</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1ModelFitter.html#a5226d265fd03c7b41e9945248d241af1">QualityType</a> quality_mz_</td>
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<p>fit quality in MZ dimension </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1ModelFitter.html#a9a599157dfa0c832cf50f5596342c73e">ModelFitter< PeakType, FeatureType >::fit()</a>, and <a class="el" href="classOpenMS_1_1ModelFitter.html#aa08948a609e0be02a55895209d3d77a9">ModelFitter< PeakType, FeatureType >::fitMZLoop_()</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1ModelFitter.html#a5226d265fd03c7b41e9945248d241af1">QualityType</a> quality_rt_</td>
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<p>fit quality in RT dimension </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1ModelFitter.html#a9a599157dfa0c832cf50f5596342c73e">ModelFitter< PeakType, FeatureType >::fit()</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1ModelFitter.html#a31ac7361125f91f71e3d07be39a76023">RawDataArrayType</a> rt_input_data_</td>
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<p>rt raw data </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1ModelFitter.html#a9a599157dfa0c832cf50f5596342c73e">ModelFitter< PeakType, FeatureType >::fit()</a>, and <a class="el" href="classOpenMS_1_1ModelFitter.html#a5e69531f4b15948d57b30909fdba0cb4">ModelFitter< PeakType, FeatureType >::fitRT_()</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1Math_1_1AsymmetricStatistics.html">Math::AsymmetricStatistics</a> rt_stat_</td>
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<p>statistics for rt </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1ModelFitter.html#a9a599157dfa0c832cf50f5596342c73e">ModelFitter< PeakType, FeatureType >::fit()</a>, and <a class="el" href="classOpenMS_1_1ModelFitter.html#a5e69531f4b15948d57b30909fdba0cb4">ModelFitter< PeakType, FeatureType >::fitRT_()</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a181486a43da338e31f089df7661f50bb">CoordinateType</a> tolerance_stdev_box_</td>
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<p>tolerance used for bounding box </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1ModelFitter.html#a4e1ed92e7c5c8f3b4db0378a122ef3b1">ModelFitter< PeakType, FeatureType >::fitMZ_()</a>, <a class="el" href="classOpenMS_1_1ModelFitter.html#a5e69531f4b15948d57b30909fdba0cb4">ModelFitter< PeakType, FeatureType >::fitRT_()</a>, and <a class="el" href="classOpenMS_1_1ModelFitter.html#a776f7572fc4f466e9527ca233471920d">ModelFitter< PeakType, FeatureType >::updateMembers_()</a>.</p>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:34 using doxygen 1.8.5</font></TD>
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