1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
|
<HTML>
<HEAD>
<TITLE>Modification Class Reference</TITLE>
<LINK HREF="doxygen.css" REL="stylesheet" TYPE="text/css">
<LINK HREF="style_ini.css" REL="stylesheet" TYPE="text/css">
</HEAD>
<BODY BGCOLOR="#FFFFFF">
<A href="index.html">Home</A> ·
<A href="classes.html">Classes</A> ·
<A href="annotated.html">Annotated Classes</A> ·
<A href="modules.html">Modules</A> ·
<A href="functions_func.html">Members</A> ·
<A href="namespaces.html">Namespaces</A> ·
<A href="pages.html">Related Pages</A>
<HR style="height:1px; border:none; border-top:1px solid #c0c0c0;">
<!-- Generated by Doxygen 1.8.5 -->
<div id="nav-path" class="navpath">
<ul>
<li class="navelem"><a class="el" href="namespaceOpenMS.html">OpenMS</a></li><li class="navelem"><a class="el" href="classOpenMS_1_1Modification.html">Modification</a></li> </ul>
</div>
</div><!-- top -->
<div class="header">
<div class="summary">
<a href="#pub-types">Public Types</a> |
<a href="#pub-methods">Public Member Functions</a> |
<a href="#pub-static-attribs">Static Public Attributes</a> |
<a href="#pro-attribs">Protected Attributes</a> |
<a href="classOpenMS_1_1Modification-members.html">List of all members</a> </div>
<div class="headertitle">
<div class="title">Modification Class Reference<div class="ingroups"><a class="el" href="group__Metadata.html">Metadata</a></div></div> </div>
</div><!--header-->
<div class="contents">
<p>Meta information about chemical modification of a sample.
<a href="classOpenMS_1_1Modification.html#details">More...</a></p>
<p><code>#include <<a class="el" href="Modification_8h_source.html">OpenMS/METADATA/Modification.h</a>></code></p>
<div class="dynheader">
Inheritance diagram for Modification:</div>
<div class="dyncontent">
<div class="center">
<img src="classOpenMS_1_1Modification.png" usemap="#Modification_map" alt=""/>
<map id="Modification_map" name="Modification_map">
<area href="classOpenMS_1_1SampleTreatment.html" title="Base class for sample treatments (Digestion, Modification, Tagging, ...) " alt="SampleTreatment" shape="rect" coords="0,56,111,80"/>
<area href="classOpenMS_1_1MetaInfoInterface.html" title="Interface for classes that can store arbitrary meta information (Type-Name-Value tuples). " alt="MetaInfoInterface" shape="rect" coords="0,0,111,24"/>
<area href="classOpenMS_1_1Tagging.html" title="Meta information about tagging of a sample e.g. ICAT labeling. " alt="Tagging" shape="rect" coords="0,168,111,192"/>
</map>
</div></div>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-types"></a>
Public Types</h2></td></tr>
<tr class="memitem:a60e47d0643ba030a4c13c4b3e7788d7f"><td class="memItemLeft" align="right" valign="top">enum  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Modification.html#a60e47d0643ba030a4c13c4b3e7788d7f">SpecificityType</a> { <br/>
  <a class="el" href="classOpenMS_1_1Modification.html#a60e47d0643ba030a4c13c4b3e7788d7fadf8e3bb19d1b4de18399b64a58a39590">AA</a>,
<a class="el" href="classOpenMS_1_1Modification.html#a60e47d0643ba030a4c13c4b3e7788d7faaf5309a6b44d50c2108ebeb56ff66924">AA_AT_CTERM</a>,
<a class="el" href="classOpenMS_1_1Modification.html#a60e47d0643ba030a4c13c4b3e7788d7fa36c755c9d424687a052d8d52f98f9492">AA_AT_NTERM</a>,
<a class="el" href="classOpenMS_1_1Modification.html#a60e47d0643ba030a4c13c4b3e7788d7fa8d9f1e0e3c9435a03680b960f327744d">CTERM</a>,
<br/>
  <a class="el" href="classOpenMS_1_1Modification.html#a60e47d0643ba030a4c13c4b3e7788d7faa4dbd6326cac52ce26d19cded6742c88">NTERM</a>,
<a class="el" href="classOpenMS_1_1Modification.html#a60e47d0643ba030a4c13c4b3e7788d7faa8fb00b1e5aed46b944ccd5bd9eaac70">SIZE_OF_SPECIFICITYTYPE</a>
<br/>
}</td></tr>
<tr class="memdesc:a60e47d0643ba030a4c13c4b3e7788d7f"><td class="mdescLeft"> </td><td class="mdescRight">specificity of the reagent. <a href="classOpenMS_1_1Modification.html#a60e47d0643ba030a4c13c4b3e7788d7f">More...</a><br/></td></tr>
<tr class="separator:a60e47d0643ba030a4c13c4b3e7788d7f"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:ab259c1021051a89bcc1fbf56a12f3902"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Modification.html#ab259c1021051a89bcc1fbf56a12f3902">Modification</a> ()</td></tr>
<tr class="memdesc:ab259c1021051a89bcc1fbf56a12f3902"><td class="mdescLeft"> </td><td class="mdescRight">default constructor <a href="#ab259c1021051a89bcc1fbf56a12f3902">More...</a><br/></td></tr>
<tr class="separator:ab259c1021051a89bcc1fbf56a12f3902"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a60807ea8c321c9bde48fcf7406437e4c"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Modification.html#a60807ea8c321c9bde48fcf7406437e4c">Modification</a> (const <a class="el" href="classOpenMS_1_1Modification.html">Modification</a> &)</td></tr>
<tr class="memdesc:a60807ea8c321c9bde48fcf7406437e4c"><td class="mdescLeft"> </td><td class="mdescRight">copy constructor <a href="#a60807ea8c321c9bde48fcf7406437e4c">More...</a><br/></td></tr>
<tr class="separator:a60807ea8c321c9bde48fcf7406437e4c"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ab4c74edf72a6cc4f9fb75f2a26e44740"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Modification.html#ab4c74edf72a6cc4f9fb75f2a26e44740">~Modification</a> ()</td></tr>
<tr class="memdesc:ab4c74edf72a6cc4f9fb75f2a26e44740"><td class="mdescLeft"> </td><td class="mdescRight">destructor <a href="#ab4c74edf72a6cc4f9fb75f2a26e44740">More...</a><br/></td></tr>
<tr class="separator:ab4c74edf72a6cc4f9fb75f2a26e44740"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a6685ae65405d6806d63040463fad4806"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Modification.html">Modification</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Modification.html#a6685ae65405d6806d63040463fad4806">operator=</a> (const <a class="el" href="classOpenMS_1_1Modification.html">Modification</a> &)</td></tr>
<tr class="memdesc:a6685ae65405d6806d63040463fad4806"><td class="mdescLeft"> </td><td class="mdescRight">assignment operator <a href="#a6685ae65405d6806d63040463fad4806">More...</a><br/></td></tr>
<tr class="separator:a6685ae65405d6806d63040463fad4806"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a095ceaebeabcb4884eda7bef0039012d"><td class="memItemLeft" align="right" valign="top">virtual bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Modification.html#a095ceaebeabcb4884eda7bef0039012d">operator==</a> (const <a class="el" href="classOpenMS_1_1SampleTreatment.html">SampleTreatment</a> &rhs) const </td></tr>
<tr class="memdesc:a095ceaebeabcb4884eda7bef0039012d"><td class="mdescLeft"> </td><td class="mdescRight">Equality operator. <a href="#a095ceaebeabcb4884eda7bef0039012d">More...</a><br/></td></tr>
<tr class="separator:a095ceaebeabcb4884eda7bef0039012d"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ad547684b6281c785fb4e9aa33cf1f859"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="classOpenMS_1_1SampleTreatment.html">SampleTreatment</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Modification.html#ad547684b6281c785fb4e9aa33cf1f859">clone</a> () const </td></tr>
<tr class="memdesc:ad547684b6281c785fb4e9aa33cf1f859"><td class="mdescLeft"> </td><td class="mdescRight">clone method. See <a class="el" href="classOpenMS_1_1SampleTreatment.html" title="Base class for sample treatments (Digestion, Modification, Tagging, ...) ">SampleTreatment</a> <a href="#ad547684b6281c785fb4e9aa33cf1f859">More...</a><br/></td></tr>
<tr class="separator:ad547684b6281c785fb4e9aa33cf1f859"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a04df2118da1f5d5d4d57ec9fbba992b7"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1String.html">String</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Modification.html#a04df2118da1f5d5d4d57ec9fbba992b7">getReagentName</a> () const </td></tr>
<tr class="memdesc:a04df2118da1f5d5d4d57ec9fbba992b7"><td class="mdescLeft"> </td><td class="mdescRight">returns the name of the reagent that was used (default: "") <a href="#a04df2118da1f5d5d4d57ec9fbba992b7">More...</a><br/></td></tr>
<tr class="separator:a04df2118da1f5d5d4d57ec9fbba992b7"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a027f65199eb3338f8a0ddc04e1c815d5"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Modification.html#a027f65199eb3338f8a0ddc04e1c815d5">setReagentName</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &reagent_name)</td></tr>
<tr class="memdesc:a027f65199eb3338f8a0ddc04e1c815d5"><td class="mdescLeft"> </td><td class="mdescRight">sets the name of the reagent that was used <a href="#a027f65199eb3338f8a0ddc04e1c815d5">More...</a><br/></td></tr>
<tr class="separator:a027f65199eb3338f8a0ddc04e1c815d5"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a51e7ec6e73028e6e0f073b01382bcaea"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Modification.html#a51e7ec6e73028e6e0f073b01382bcaea">getMass</a> () const </td></tr>
<tr class="memdesc:a51e7ec6e73028e6e0f073b01382bcaea"><td class="mdescLeft"> </td><td class="mdescRight">returns the mass change (default: 0.0) <a href="#a51e7ec6e73028e6e0f073b01382bcaea">More...</a><br/></td></tr>
<tr class="separator:a51e7ec6e73028e6e0f073b01382bcaea"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a984d3ffb17a84b059acea63b11177c92"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Modification.html#a984d3ffb17a84b059acea63b11177c92">setMass</a> (<a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> mass)</td></tr>
<tr class="memdesc:a984d3ffb17a84b059acea63b11177c92"><td class="mdescLeft"> </td><td class="mdescRight">sets the mass change <a href="#a984d3ffb17a84b059acea63b11177c92">More...</a><br/></td></tr>
<tr class="separator:a984d3ffb17a84b059acea63b11177c92"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a801521e31378e952afbfe933d29b1844"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1Modification.html#a60e47d0643ba030a4c13c4b3e7788d7f">SpecificityType</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Modification.html#a801521e31378e952afbfe933d29b1844">getSpecificityType</a> () const </td></tr>
<tr class="memdesc:a801521e31378e952afbfe933d29b1844"><td class="mdescLeft"> </td><td class="mdescRight">returns the specificity of the the reagent (default: AA) <a href="#a801521e31378e952afbfe933d29b1844">More...</a><br/></td></tr>
<tr class="separator:a801521e31378e952afbfe933d29b1844"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a7a0ebaba908900aeb0423d6de1090df0"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Modification.html#a7a0ebaba908900aeb0423d6de1090df0">setSpecificityType</a> (const <a class="el" href="classOpenMS_1_1Modification.html#a60e47d0643ba030a4c13c4b3e7788d7f">SpecificityType</a> &specificity_type)</td></tr>
<tr class="memdesc:a7a0ebaba908900aeb0423d6de1090df0"><td class="mdescLeft"> </td><td class="mdescRight">sets the specificity of the the reagent <a href="#a7a0ebaba908900aeb0423d6de1090df0">More...</a><br/></td></tr>
<tr class="separator:a7a0ebaba908900aeb0423d6de1090df0"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae2b7f54d12a4780ccda001d749ef01de"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1String.html">String</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Modification.html#ae2b7f54d12a4780ccda001d749ef01de">getAffectedAminoAcids</a> () const </td></tr>
<tr class="memdesc:ae2b7f54d12a4780ccda001d749ef01de"><td class="mdescLeft"> </td><td class="mdescRight">returns a string containing the one letter code of the amino acids that are affected by the reagent. (default: "") <a href="#ae2b7f54d12a4780ccda001d749ef01de">More...</a><br/></td></tr>
<tr class="separator:ae2b7f54d12a4780ccda001d749ef01de"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a72a78e4bd735aef8c1c7ff48328880f9"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Modification.html#a72a78e4bd735aef8c1c7ff48328880f9">setAffectedAminoAcids</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &affected_amino_acids)</td></tr>
<tr class="memdesc:a72a78e4bd735aef8c1c7ff48328880f9"><td class="mdescLeft"> </td><td class="mdescRight">returns a string containing the one letter code of the amino acids that are affected by the reagent. Do not separate them by space, tab or comma! <a href="#a72a78e4bd735aef8c1c7ff48328880f9">More...</a><br/></td></tr>
<tr class="separator:a72a78e4bd735aef8c1c7ff48328880f9"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_methods_classOpenMS_1_1SampleTreatment"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classOpenMS_1_1SampleTreatment')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classOpenMS_1_1SampleTreatment.html">SampleTreatment</a></td></tr>
<tr class="memitem:add876bbcecf14ebd488fbdea876c6ddf inherit pub_methods_classOpenMS_1_1SampleTreatment"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SampleTreatment.html#add876bbcecf14ebd488fbdea876c6ddf">SampleTreatment</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &type)</td></tr>
<tr class="memdesc:add876bbcecf14ebd488fbdea876c6ddf inherit pub_methods_classOpenMS_1_1SampleTreatment"><td class="mdescLeft"> </td><td class="mdescRight">Constructor. <a href="#add876bbcecf14ebd488fbdea876c6ddf">More...</a><br/></td></tr>
<tr class="separator:add876bbcecf14ebd488fbdea876c6ddf inherit pub_methods_classOpenMS_1_1SampleTreatment"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a67757cac504d89a0bc210a50a29fd9cf inherit pub_methods_classOpenMS_1_1SampleTreatment"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SampleTreatment.html#a67757cac504d89a0bc210a50a29fd9cf">SampleTreatment</a> (const <a class="el" href="classOpenMS_1_1SampleTreatment.html">SampleTreatment</a> &)</td></tr>
<tr class="memdesc:a67757cac504d89a0bc210a50a29fd9cf inherit pub_methods_classOpenMS_1_1SampleTreatment"><td class="mdescLeft"> </td><td class="mdescRight">Copy constructor. <a href="#a67757cac504d89a0bc210a50a29fd9cf">More...</a><br/></td></tr>
<tr class="separator:a67757cac504d89a0bc210a50a29fd9cf inherit pub_methods_classOpenMS_1_1SampleTreatment"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a707d5be10451aa1131d77f719963741c inherit pub_methods_classOpenMS_1_1SampleTreatment"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SampleTreatment.html#a707d5be10451aa1131d77f719963741c">~SampleTreatment</a> ()</td></tr>
<tr class="memdesc:a707d5be10451aa1131d77f719963741c inherit pub_methods_classOpenMS_1_1SampleTreatment"><td class="mdescLeft"> </td><td class="mdescRight">destructor <a href="#a707d5be10451aa1131d77f719963741c">More...</a><br/></td></tr>
<tr class="separator:a707d5be10451aa1131d77f719963741c inherit pub_methods_classOpenMS_1_1SampleTreatment"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a35ebf180fb2837146f652941924655f4 inherit pub_methods_classOpenMS_1_1SampleTreatment"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1SampleTreatment.html">SampleTreatment</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SampleTreatment.html#a35ebf180fb2837146f652941924655f4">operator=</a> (const <a class="el" href="classOpenMS_1_1SampleTreatment.html">SampleTreatment</a> &)</td></tr>
<tr class="memdesc:a35ebf180fb2837146f652941924655f4 inherit pub_methods_classOpenMS_1_1SampleTreatment"><td class="mdescLeft"> </td><td class="mdescRight">Assignment operator. <a href="#a35ebf180fb2837146f652941924655f4">More...</a><br/></td></tr>
<tr class="separator:a35ebf180fb2837146f652941924655f4 inherit pub_methods_classOpenMS_1_1SampleTreatment"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aa23b352e29bc8e7bbc2d870b90f28760 inherit pub_methods_classOpenMS_1_1SampleTreatment"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1String.html">String</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SampleTreatment.html#aa23b352e29bc8e7bbc2d870b90f28760">getType</a> () const </td></tr>
<tr class="memdesc:aa23b352e29bc8e7bbc2d870b90f28760 inherit pub_methods_classOpenMS_1_1SampleTreatment"><td class="mdescLeft"> </td><td class="mdescRight">return the treatment type <a href="#aa23b352e29bc8e7bbc2d870b90f28760">More...</a><br/></td></tr>
<tr class="separator:aa23b352e29bc8e7bbc2d870b90f28760 inherit pub_methods_classOpenMS_1_1SampleTreatment"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:af974151b7df6fcfeb6509e26431dcaa0 inherit pub_methods_classOpenMS_1_1SampleTreatment"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1String.html">String</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SampleTreatment.html#af974151b7df6fcfeb6509e26431dcaa0">getComment</a> () const </td></tr>
<tr class="memdesc:af974151b7df6fcfeb6509e26431dcaa0 inherit pub_methods_classOpenMS_1_1SampleTreatment"><td class="mdescLeft"> </td><td class="mdescRight">returns the description of the sample treatment <a href="#af974151b7df6fcfeb6509e26431dcaa0">More...</a><br/></td></tr>
<tr class="separator:af974151b7df6fcfeb6509e26431dcaa0 inherit pub_methods_classOpenMS_1_1SampleTreatment"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a2116f9b1dde8ba3aef4a07e6f2a970a7 inherit pub_methods_classOpenMS_1_1SampleTreatment"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SampleTreatment.html#a2116f9b1dde8ba3aef4a07e6f2a970a7">setComment</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &comment)</td></tr>
<tr class="memdesc:a2116f9b1dde8ba3aef4a07e6f2a970a7 inherit pub_methods_classOpenMS_1_1SampleTreatment"><td class="mdescLeft"> </td><td class="mdescRight">sets the description of the sample treatment <a href="#a2116f9b1dde8ba3aef4a07e6f2a970a7">More...</a><br/></td></tr>
<tr class="separator:a2116f9b1dde8ba3aef4a07e6f2a970a7 inherit pub_methods_classOpenMS_1_1SampleTreatment"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_methods_classOpenMS_1_1MetaInfoInterface"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classOpenMS_1_1MetaInfoInterface')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classOpenMS_1_1MetaInfoInterface.html">MetaInfoInterface</a></td></tr>
<tr class="memitem:a4adf02f403d7b972e7e6a58e938ecb6c inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#a4adf02f403d7b972e7e6a58e938ecb6c">MetaInfoInterface</a> ()</td></tr>
<tr class="memdesc:a4adf02f403d7b972e7e6a58e938ecb6c inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">constructor <a href="#a4adf02f403d7b972e7e6a58e938ecb6c">More...</a><br/></td></tr>
<tr class="separator:a4adf02f403d7b972e7e6a58e938ecb6c inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae216eb0aa3192b67d70da8c461583256 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#ae216eb0aa3192b67d70da8c461583256">MetaInfoInterface</a> (const <a class="el" href="classOpenMS_1_1MetaInfoInterface.html">MetaInfoInterface</a> &rhs)</td></tr>
<tr class="memdesc:ae216eb0aa3192b67d70da8c461583256 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">copy constructor <a href="#ae216eb0aa3192b67d70da8c461583256">More...</a><br/></td></tr>
<tr class="separator:ae216eb0aa3192b67d70da8c461583256 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a30c6469ab28a1ae578b23109f8b931c6 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#a30c6469ab28a1ae578b23109f8b931c6">~MetaInfoInterface</a> ()</td></tr>
<tr class="memdesc:a30c6469ab28a1ae578b23109f8b931c6 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">destructor <a href="#a30c6469ab28a1ae578b23109f8b931c6">More...</a><br/></td></tr>
<tr class="separator:a30c6469ab28a1ae578b23109f8b931c6 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a0b7e858982ccb9d37b01971e6cd43596 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html">MetaInfoInterface</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#a0b7e858982ccb9d37b01971e6cd43596">operator=</a> (const <a class="el" href="classOpenMS_1_1MetaInfoInterface.html">MetaInfoInterface</a> &rhs)</td></tr>
<tr class="memdesc:a0b7e858982ccb9d37b01971e6cd43596 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">assignment operator <a href="#a0b7e858982ccb9d37b01971e6cd43596">More...</a><br/></td></tr>
<tr class="separator:a0b7e858982ccb9d37b01971e6cd43596 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae1233471a3265a00a5edef4017ee8f20 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#ae1233471a3265a00a5edef4017ee8f20">operator==</a> (const <a class="el" href="classOpenMS_1_1MetaInfoInterface.html">MetaInfoInterface</a> &rhs) const </td></tr>
<tr class="memdesc:ae1233471a3265a00a5edef4017ee8f20 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">Equality operator. <a href="#ae1233471a3265a00a5edef4017ee8f20">More...</a><br/></td></tr>
<tr class="separator:ae1233471a3265a00a5edef4017ee8f20 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aabdb6bf51d554dba98617e3f7609c6cf inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#aabdb6bf51d554dba98617e3f7609c6cf">operator!=</a> (const <a class="el" href="classOpenMS_1_1MetaInfoInterface.html">MetaInfoInterface</a> &rhs) const </td></tr>
<tr class="memdesc:aabdb6bf51d554dba98617e3f7609c6cf inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">Equality operator. <a href="#aabdb6bf51d554dba98617e3f7609c6cf">More...</a><br/></td></tr>
<tr class="separator:aabdb6bf51d554dba98617e3f7609c6cf inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aae35ae2dfad88d673b03c787aafca83d inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1DataValue.html">DataValue</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#aae35ae2dfad88d673b03c787aafca83d">getMetaValue</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &name) const </td></tr>
<tr class="memdesc:aae35ae2dfad88d673b03c787aafca83d inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">returns the value corresponding to a string <a href="#aae35ae2dfad88d673b03c787aafca83d">More...</a><br/></td></tr>
<tr class="separator:aae35ae2dfad88d673b03c787aafca83d inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae9b2516ea1331df63e4fc098c16b50e3 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1DataValue.html">DataValue</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#ae9b2516ea1331df63e4fc098c16b50e3">getMetaValue</a> (<a class="el" href="group__Concept.html#gaba0996d26f7be2572973245b51852757">UInt</a> index) const </td></tr>
<tr class="memdesc:ae9b2516ea1331df63e4fc098c16b50e3 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">returns the value corresponding to an index <a href="#ae9b2516ea1331df63e4fc098c16b50e3">More...</a><br/></td></tr>
<tr class="separator:ae9b2516ea1331df63e4fc098c16b50e3 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:acabf8a0e3c40224df62b282a5ce0318f inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#acabf8a0e3c40224df62b282a5ce0318f">metaValueExists</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &name) const </td></tr>
<tr class="memdesc:acabf8a0e3c40224df62b282a5ce0318f inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">returns if this <a class="el" href="classOpenMS_1_1MetaInfo.html" title="A Type-Name-Value tuple class. ">MetaInfo</a> is set <a href="#acabf8a0e3c40224df62b282a5ce0318f">More...</a><br/></td></tr>
<tr class="separator:acabf8a0e3c40224df62b282a5ce0318f inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aabf87daa46e081dd9584d4987d2206f6 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#aabf87daa46e081dd9584d4987d2206f6">metaValueExists</a> (<a class="el" href="group__Concept.html#gaba0996d26f7be2572973245b51852757">UInt</a> index) const </td></tr>
<tr class="memdesc:aabf87daa46e081dd9584d4987d2206f6 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">returns if this <a class="el" href="classOpenMS_1_1MetaInfo.html" title="A Type-Name-Value tuple class. ">MetaInfo</a> is set <a href="#aabf87daa46e081dd9584d4987d2206f6">More...</a><br/></td></tr>
<tr class="separator:aabf87daa46e081dd9584d4987d2206f6 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a135a7e818125b31198a8a65d9ac7a3d1 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#a135a7e818125b31198a8a65d9ac7a3d1">setMetaValue</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &name, const <a class="el" href="classOpenMS_1_1DataValue.html">DataValue</a> &value)</td></tr>
<tr class="memdesc:a135a7e818125b31198a8a65d9ac7a3d1 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">sets the <a class="el" href="classOpenMS_1_1DataValue.html" title="Class to hold strings, numeric values, lists of strings and lists of numeric values. ">DataValue</a> corresponding to a name <a href="#a135a7e818125b31198a8a65d9ac7a3d1">More...</a><br/></td></tr>
<tr class="separator:a135a7e818125b31198a8a65d9ac7a3d1 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:abbb9d3ebe8c7c3f6a9ed131faa8cf2c9 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#abbb9d3ebe8c7c3f6a9ed131faa8cf2c9">setMetaValue</a> (<a class="el" href="group__Concept.html#gaba0996d26f7be2572973245b51852757">UInt</a> index, const <a class="el" href="classOpenMS_1_1DataValue.html">DataValue</a> &value)</td></tr>
<tr class="memdesc:abbb9d3ebe8c7c3f6a9ed131faa8cf2c9 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">sets the <a class="el" href="classOpenMS_1_1DataValue.html" title="Class to hold strings, numeric values, lists of strings and lists of numeric values. ">DataValue</a> corresponding to an index <a href="#abbb9d3ebe8c7c3f6a9ed131faa8cf2c9">More...</a><br/></td></tr>
<tr class="separator:abbb9d3ebe8c7c3f6a9ed131faa8cf2c9 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aac68103b8336fa854cf4c59f8bd6cff8 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#aac68103b8336fa854cf4c59f8bd6cff8">removeMetaValue</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &name)</td></tr>
<tr class="memdesc:aac68103b8336fa854cf4c59f8bd6cff8 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">Removes the <a class="el" href="classOpenMS_1_1DataValue.html" title="Class to hold strings, numeric values, lists of strings and lists of numeric values. ">DataValue</a> corresponding to <code>name</code> if it exists. <a href="#aac68103b8336fa854cf4c59f8bd6cff8">More...</a><br/></td></tr>
<tr class="separator:aac68103b8336fa854cf4c59f8bd6cff8 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a3a8a7da0f5e71d3b96ea902c29bcf632 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#a3a8a7da0f5e71d3b96ea902c29bcf632">removeMetaValue</a> (<a class="el" href="group__Concept.html#gaba0996d26f7be2572973245b51852757">UInt</a> index)</td></tr>
<tr class="memdesc:a3a8a7da0f5e71d3b96ea902c29bcf632 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">Removes the <a class="el" href="classOpenMS_1_1DataValue.html" title="Class to hold strings, numeric values, lists of strings and lists of numeric values. ">DataValue</a> corresponding to <code>index</code> if it exists. <a href="#a3a8a7da0f5e71d3b96ea902c29bcf632">More...</a><br/></td></tr>
<tr class="separator:a3a8a7da0f5e71d3b96ea902c29bcf632 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aaefa2a4a5d50f899cdd82d686104d164 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#aaefa2a4a5d50f899cdd82d686104d164">getKeys</a> (std::vector< <a class="el" href="classOpenMS_1_1String.html">String</a> > &keys) const </td></tr>
<tr class="memdesc:aaefa2a4a5d50f899cdd82d686104d164 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">fills the given vector with a list of all keys for which a value is set <a href="#aaefa2a4a5d50f899cdd82d686104d164">More...</a><br/></td></tr>
<tr class="separator:aaefa2a4a5d50f899cdd82d686104d164 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a121b22fe4dd05ef9fc4160bd52e9bd0b inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#a121b22fe4dd05ef9fc4160bd52e9bd0b">getKeys</a> (std::vector< <a class="el" href="group__Concept.html#gaba0996d26f7be2572973245b51852757">UInt</a> > &keys) const </td></tr>
<tr class="memdesc:a121b22fe4dd05ef9fc4160bd52e9bd0b inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">fills the given vector with a list of all keys for which a value is set <a href="#a121b22fe4dd05ef9fc4160bd52e9bd0b">More...</a><br/></td></tr>
<tr class="separator:a121b22fe4dd05ef9fc4160bd52e9bd0b inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a001483d1f67f068e585f10d9abcc487d inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#a001483d1f67f068e585f10d9abcc487d">isMetaEmpty</a> () const </td></tr>
<tr class="memdesc:a001483d1f67f068e585f10d9abcc487d inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">returns if the <a class="el" href="classOpenMS_1_1MetaInfo.html" title="A Type-Name-Value tuple class. ">MetaInfo</a> is empty <a href="#a001483d1f67f068e585f10d9abcc487d">More...</a><br/></td></tr>
<tr class="separator:a001483d1f67f068e585f10d9abcc487d inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae5b77ecfe9182ebd648d54ca1137eba0 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#ae5b77ecfe9182ebd648d54ca1137eba0">clearMetaInfo</a> ()</td></tr>
<tr class="memdesc:ae5b77ecfe9182ebd648d54ca1137eba0 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">removes all meta values <a href="#ae5b77ecfe9182ebd648d54ca1137eba0">More...</a><br/></td></tr>
<tr class="separator:ae5b77ecfe9182ebd648d54ca1137eba0 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-static-attribs"></a>
Static Public Attributes</h2></td></tr>
<tr class="memitem:a22ebde2b35a6b53e9594e5a8170a46ba"><td class="memItemLeft" align="right" valign="top">static const std::string </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Modification.html#a22ebde2b35a6b53e9594e5a8170a46ba">NamesOfSpecificityType</a> [<a class="el" href="classOpenMS_1_1Modification.html#a60e47d0643ba030a4c13c4b3e7788d7faa8fb00b1e5aed46b944ccd5bd9eaac70">SIZE_OF_SPECIFICITYTYPE</a>]</td></tr>
<tr class="memdesc:a22ebde2b35a6b53e9594e5a8170a46ba"><td class="mdescLeft"> </td><td class="mdescRight">Names of specifitiy types. <a href="#a22ebde2b35a6b53e9594e5a8170a46ba">More...</a><br/></td></tr>
<tr class="separator:a22ebde2b35a6b53e9594e5a8170a46ba"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pro-attribs"></a>
Protected Attributes</h2></td></tr>
<tr class="memitem:a59b3681515233e08429369def98268da"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Modification.html#a59b3681515233e08429369def98268da">reagent_name_</a></td></tr>
<tr class="separator:a59b3681515233e08429369def98268da"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ac0c786325cbcf73a4146acd843b3e404"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Modification.html#ac0c786325cbcf73a4146acd843b3e404">mass_</a></td></tr>
<tr class="separator:ac0c786325cbcf73a4146acd843b3e404"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae1c8cd5f3264845b16200d4224d95d04"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Modification.html#a60e47d0643ba030a4c13c4b3e7788d7f">SpecificityType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Modification.html#ae1c8cd5f3264845b16200d4224d95d04">specificity_type_</a></td></tr>
<tr class="separator:ae1c8cd5f3264845b16200d4224d95d04"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a489bd9122ead366ab01e4baad8c4fbd8"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Modification.html#a489bd9122ead366ab01e4baad8c4fbd8">affected_amino_acids_</a></td></tr>
<tr class="separator:a489bd9122ead366ab01e4baad8c4fbd8"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pro_attribs_classOpenMS_1_1SampleTreatment"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classOpenMS_1_1SampleTreatment')"><img src="closed.png" alt="-"/> Protected Attributes inherited from <a class="el" href="classOpenMS_1_1SampleTreatment.html">SampleTreatment</a></td></tr>
<tr class="memitem:a0bfd23e2ac1b1a4933438d6080550d5f inherit pro_attribs_classOpenMS_1_1SampleTreatment"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SampleTreatment.html#a0bfd23e2ac1b1a4933438d6080550d5f">type_</a></td></tr>
<tr class="separator:a0bfd23e2ac1b1a4933438d6080550d5f inherit pro_attribs_classOpenMS_1_1SampleTreatment"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a0476ea2b66eba99318ede9591a223f64 inherit pro_attribs_classOpenMS_1_1SampleTreatment"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SampleTreatment.html#a0476ea2b66eba99318ede9591a223f64">comment_</a></td></tr>
<tr class="separator:a0476ea2b66eba99318ede9591a223f64 inherit pro_attribs_classOpenMS_1_1SampleTreatment"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pro_attribs_classOpenMS_1_1MetaInfoInterface"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classOpenMS_1_1MetaInfoInterface')"><img src="closed.png" alt="-"/> Protected Attributes inherited from <a class="el" href="classOpenMS_1_1MetaInfoInterface.html">MetaInfoInterface</a></td></tr>
<tr class="memitem:a07ce72f4d24f650fcdbba3801e1b8f59 inherit pro_attribs_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1MetaInfo.html">MetaInfo</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#a07ce72f4d24f650fcdbba3801e1b8f59">meta_</a></td></tr>
<tr class="memdesc:a07ce72f4d24f650fcdbba3801e1b8f59 inherit pro_attribs_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">pointer to the <a class="el" href="classOpenMS_1_1MetaInfo.html" title="A Type-Name-Value tuple class. ">MetaInfo</a> object. 0 by default <a href="#a07ce72f4d24f650fcdbba3801e1b8f59">More...</a><br/></td></tr>
<tr class="separator:a07ce72f4d24f650fcdbba3801e1b8f59 inherit pro_attribs_classOpenMS_1_1MetaInfoInterface"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="inherited"></a>
Additional Inherited Members</h2></td></tr>
<tr class="inherit_header pub_static_methods_classOpenMS_1_1MetaInfoInterface"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classOpenMS_1_1MetaInfoInterface')"><img src="closed.png" alt="-"/> Static Public Member Functions inherited from <a class="el" href="classOpenMS_1_1MetaInfoInterface.html">MetaInfoInterface</a></td></tr>
<tr class="memitem:adc0992991f912788ed14e72b6f62b2dd inherit pub_static_methods_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top">static <a class="el" href="classOpenMS_1_1MetaInfoRegistry.html">MetaInfoRegistry</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#adc0992991f912788ed14e72b6f62b2dd">metaRegistry</a> ()</td></tr>
<tr class="memdesc:adc0992991f912788ed14e72b6f62b2dd inherit pub_static_methods_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">retuns a reference to the <a class="el" href="classOpenMS_1_1MetaInfoRegistry.html" title="Registry which assigns unique integer indices to strings. ">MetaInfoRegistry</a> <a href="#adc0992991f912788ed14e72b6f62b2dd">More...</a><br/></td></tr>
<tr class="separator:adc0992991f912788ed14e72b6f62b2dd inherit pub_static_methods_classOpenMS_1_1MetaInfoInterface"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pro_methods_classOpenMS_1_1MetaInfoInterface"><td colspan="2" onclick="javascript:toggleInherit('pro_methods_classOpenMS_1_1MetaInfoInterface')"><img src="closed.png" alt="-"/> Protected Member Functions inherited from <a class="el" href="classOpenMS_1_1MetaInfoInterface.html">MetaInfoInterface</a></td></tr>
<tr class="memitem:a23bcf7d2c2357d11e1363dfe44057037 inherit pro_methods_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#a23bcf7d2c2357d11e1363dfe44057037">createIfNotExists_</a> ()</td></tr>
<tr class="memdesc:a23bcf7d2c2357d11e1363dfe44057037 inherit pro_methods_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">creates the <a class="el" href="classOpenMS_1_1MetaInfo.html" title="A Type-Name-Value tuple class. ">MetaInfo</a> object if it does not exist <a href="#a23bcf7d2c2357d11e1363dfe44057037">More...</a><br/></td></tr>
<tr class="separator:a23bcf7d2c2357d11e1363dfe44057037 inherit pro_methods_classOpenMS_1_1MetaInfoInterface"><td class="memSeparator" colspan="2"> </td></tr>
</table>
<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>Meta information about chemical modification of a sample. </p>
<p>Representation of some kind of modification. It hold information about what amino acids are modified and how much the mass changes. </p>
</div><h2 class="groupheader">Member Enumeration Documentation</h2>
<a class="anchor" id="a60e47d0643ba030a4c13c4b3e7788d7f"></a>
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname">enum <a class="el" href="classOpenMS_1_1Modification.html#a60e47d0643ba030a4c13c4b3e7788d7f">SpecificityType</a></td>
</tr>
</table>
</div><div class="memdoc">
<p>specificity of the reagent. </p>
<table class="fieldtable">
<tr><th colspan="2">Enumerator</th></tr><tr><td class="fieldname"><em><a class="anchor" id="a60e47d0643ba030a4c13c4b3e7788d7fadf8e3bb19d1b4de18399b64a58a39590"></a>AA</em> </td><td class="fielddoc">
<p>specified amino acids are modified </p>
</td></tr>
<tr><td class="fieldname"><em><a class="anchor" id="a60e47d0643ba030a4c13c4b3e7788d7faaf5309a6b44d50c2108ebeb56ff66924"></a>AA_AT_CTERM</em> </td><td class="fielddoc">
<p>specified amino acids are modified, if they are at the C-terminus </p>
</td></tr>
<tr><td class="fieldname"><em><a class="anchor" id="a60e47d0643ba030a4c13c4b3e7788d7fa36c755c9d424687a052d8d52f98f9492"></a>AA_AT_NTERM</em> </td><td class="fielddoc">
<p>specified amino acids are modified, if they are at the N-terminus </p>
</td></tr>
<tr><td class="fieldname"><em><a class="anchor" id="a60e47d0643ba030a4c13c4b3e7788d7fa8d9f1e0e3c9435a03680b960f327744d"></a>CTERM</em> </td><td class="fielddoc">
<p>the C-termiuns is modified </p>
</td></tr>
<tr><td class="fieldname"><em><a class="anchor" id="a60e47d0643ba030a4c13c4b3e7788d7faa4dbd6326cac52ce26d19cded6742c88"></a>NTERM</em> </td><td class="fielddoc">
<p>the N-termiuns is modified </p>
</td></tr>
<tr><td class="fieldname"><em><a class="anchor" id="a60e47d0643ba030a4c13c4b3e7788d7faa8fb00b1e5aed46b944ccd5bd9eaac70"></a>SIZE_OF_SPECIFICITYTYPE</em> </td><td class="fielddoc">
</td></tr>
</table>
</div>
</div>
<h2 class="groupheader">Constructor & Destructor Documentation</h2>
<a class="anchor" id="ab259c1021051a89bcc1fbf56a12f3902"></a>
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname"><a class="el" href="classOpenMS_1_1Modification.html">Modification</a> </td>
<td>(</td>
<td class="paramname"></td><td>)</td>
<td></td>
</tr>
</table>
</div><div class="memdoc">
<p>default constructor </p>
</div>
</div>
<a class="anchor" id="a60807ea8c321c9bde48fcf7406437e4c"></a>
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname"><a class="el" href="classOpenMS_1_1Modification.html">Modification</a> </td>
<td>(</td>
<td class="paramtype">const <a class="el" href="classOpenMS_1_1Modification.html">Modification</a> & </td>
<td class="paramname"></td><td>)</td>
<td></td>
</tr>
</table>
</div><div class="memdoc">
<p>copy constructor </p>
</div>
</div>
<a class="anchor" id="ab4c74edf72a6cc4f9fb75f2a26e44740"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">virtual ~<a class="el" href="classOpenMS_1_1Modification.html">Modification</a> </td>
<td>(</td>
<td class="paramname"></td><td>)</td>
<td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">virtual</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>destructor </p>
</div>
</div>
<h2 class="groupheader">Member Function Documentation</h2>
<a class="anchor" id="ad547684b6281c785fb4e9aa33cf1f859"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">virtual <a class="el" href="classOpenMS_1_1SampleTreatment.html">SampleTreatment</a>* clone </td>
<td>(</td>
<td class="paramname"></td><td>)</td>
<td> const</td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">virtual</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>clone method. See <a class="el" href="classOpenMS_1_1SampleTreatment.html" title="Base class for sample treatments (Digestion, Modification, Tagging, ...) ">SampleTreatment</a> </p>
<p>Implements <a class="el" href="classOpenMS_1_1SampleTreatment.html#a51b58d600ee99017e8104ce3d65de180">SampleTreatment</a>.</p>
<p>Reimplemented in <a class="el" href="classOpenMS_1_1Tagging.html#ad547684b6281c785fb4e9aa33cf1f859">Tagging</a>.</p>
</div>
</div>
<a class="anchor" id="ae2b7f54d12a4780ccda001d749ef01de"></a>
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname">const <a class="el" href="classOpenMS_1_1String.html">String</a>& getAffectedAminoAcids </td>
<td>(</td>
<td class="paramname"></td><td>)</td>
<td> const</td>
</tr>
</table>
</div><div class="memdoc">
<p>returns a string containing the one letter code of the amino acids that are affected by the reagent. (default: "") </p>
</div>
</div>
<a class="anchor" id="a51e7ec6e73028e6e0f073b01382bcaea"></a>
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> getMass </td>
<td>(</td>
<td class="paramname"></td><td>)</td>
<td> const</td>
</tr>
</table>
</div><div class="memdoc">
<p>returns the mass change (default: 0.0) </p>
</div>
</div>
<a class="anchor" id="a04df2118da1f5d5d4d57ec9fbba992b7"></a>
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname">const <a class="el" href="classOpenMS_1_1String.html">String</a>& getReagentName </td>
<td>(</td>
<td class="paramname"></td><td>)</td>
<td> const</td>
</tr>
</table>
</div><div class="memdoc">
<p>returns the name of the reagent that was used (default: "") </p>
</div>
</div>
<a class="anchor" id="a801521e31378e952afbfe933d29b1844"></a>
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname">const <a class="el" href="classOpenMS_1_1Modification.html#a60e47d0643ba030a4c13c4b3e7788d7f">SpecificityType</a>& getSpecificityType </td>
<td>(</td>
<td class="paramname"></td><td>)</td>
<td> const</td>
</tr>
</table>
</div><div class="memdoc">
<p>returns the specificity of the the reagent (default: AA) </p>
</div>
</div>
<a class="anchor" id="a6685ae65405d6806d63040463fad4806"></a>
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname"><a class="el" href="classOpenMS_1_1Modification.html">Modification</a>& operator= </td>
<td>(</td>
<td class="paramtype">const <a class="el" href="classOpenMS_1_1Modification.html">Modification</a> & </td>
<td class="paramname"></td><td>)</td>
<td></td>
</tr>
</table>
</div><div class="memdoc">
<p>assignment operator </p>
</div>
</div>
<a class="anchor" id="a095ceaebeabcb4884eda7bef0039012d"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">virtual bool operator== </td>
<td>(</td>
<td class="paramtype">const <a class="el" href="classOpenMS_1_1SampleTreatment.html">SampleTreatment</a> & </td>
<td class="paramname"><em>rhs</em></td><td>)</td>
<td> const</td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">virtual</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>Equality operator. </p>
<p>Although this operator takes a reference to a <a class="el" href="classOpenMS_1_1SampleTreatment.html" title="Base class for sample treatments (Digestion, Modification, Tagging, ...) ">SampleTreatment</a> as argument it tests for the equality of <a class="el" href="classOpenMS_1_1Tagging.html" title="Meta information about tagging of a sample e.g. ICAT labeling. ">Tagging</a> instances! </p>
<p>Reimplemented from <a class="el" href="classOpenMS_1_1SampleTreatment.html#a095ceaebeabcb4884eda7bef0039012d">SampleTreatment</a>.</p>
<p>Reimplemented in <a class="el" href="classOpenMS_1_1Tagging.html#a095ceaebeabcb4884eda7bef0039012d">Tagging</a>.</p>
</div>
</div>
<a class="anchor" id="a72a78e4bd735aef8c1c7ff48328880f9"></a>
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname">void setAffectedAminoAcids </td>
<td>(</td>
<td class="paramtype">const <a class="el" href="classOpenMS_1_1String.html">String</a> & </td>
<td class="paramname"><em>affected_amino_acids</em></td><td>)</td>
<td></td>
</tr>
</table>
</div><div class="memdoc">
<p>returns a string containing the one letter code of the amino acids that are affected by the reagent. Do not separate them by space, tab or comma! </p>
</div>
</div>
<a class="anchor" id="a984d3ffb17a84b059acea63b11177c92"></a>
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname">void setMass </td>
<td>(</td>
<td class="paramtype"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> </td>
<td class="paramname"><em>mass</em></td><td>)</td>
<td></td>
</tr>
</table>
</div><div class="memdoc">
<p>sets the mass change </p>
</div>
</div>
<a class="anchor" id="a027f65199eb3338f8a0ddc04e1c815d5"></a>
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname">void setReagentName </td>
<td>(</td>
<td class="paramtype">const <a class="el" href="classOpenMS_1_1String.html">String</a> & </td>
<td class="paramname"><em>reagent_name</em></td><td>)</td>
<td></td>
</tr>
</table>
</div><div class="memdoc">
<p>sets the name of the reagent that was used </p>
</div>
</div>
<a class="anchor" id="a7a0ebaba908900aeb0423d6de1090df0"></a>
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname">void setSpecificityType </td>
<td>(</td>
<td class="paramtype">const <a class="el" href="classOpenMS_1_1Modification.html#a60e47d0643ba030a4c13c4b3e7788d7f">SpecificityType</a> & </td>
<td class="paramname"><em>specificity_type</em></td><td>)</td>
<td></td>
</tr>
</table>
</div><div class="memdoc">
<p>sets the specificity of the the reagent </p>
</div>
</div>
<h2 class="groupheader">Member Data Documentation</h2>
<a class="anchor" id="a489bd9122ead366ab01e4baad8c4fbd8"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname"><a class="el" href="classOpenMS_1_1String.html">String</a> affected_amino_acids_</td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">protected</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
</div>
</div>
<a class="anchor" id="ac0c786325cbcf73a4146acd843b3e404"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> mass_</td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">protected</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
</div>
</div>
<a class="anchor" id="a22ebde2b35a6b53e9594e5a8170a46ba"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">const std::string NamesOfSpecificityType[<a class="el" href="classOpenMS_1_1Modification.html#a60e47d0643ba030a4c13c4b3e7788d7faa8fb00b1e5aed46b944ccd5bd9eaac70">SIZE_OF_SPECIFICITYTYPE</a>]</td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">static</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>Names of specifitiy types. </p>
</div>
</div>
<a class="anchor" id="a59b3681515233e08429369def98268da"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname"><a class="el" href="classOpenMS_1_1String.html">String</a> reagent_name_</td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">protected</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
</div>
</div>
<a class="anchor" id="ae1c8cd5f3264845b16200d4224d95d04"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname"><a class="el" href="classOpenMS_1_1Modification.html#a60e47d0643ba030a4c13c4b3e7788d7f">SpecificityType</a> specificity_type_</td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">protected</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
</div>
</div>
</div><!-- contents -->
<HR style="height:1px; border:none; border-top:1px solid #c0c0c0;">
<TABLE width="100%" border="0">
<TR>
<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:33 using doxygen 1.8.5</font></TD>
</TR>
</TABLE>
</BODY>
</HTML>
|
