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<TITLE>OpenSwathDataAccessHelper Class Reference</TITLE>
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<a href="#pub-static-methods">Static Public Member Functions</a> &#124;
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<p>Several helpers to convert <a class="el" href="namespaceOpenMS.html" title="Main OpenMS namespace. ">OpenMS</a> datastructures to structures that implement the OpenSWATH interfaces.  
 <a href="classOpenMS_1_1OpenSwathDataAccessHelper.html#details">More...</a></p>

<p><code>#include &lt;<a class="el" href="DataAccessHelper_8h_source.html">OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/DataAccessHelper.h</a>&gt;</code></p>
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-static-methods"></a>
Static Public Member Functions</h2></td></tr>
<tr class="memitem:abdfea944b47657cb07679cb723bb7d1e"><td class="memItemLeft" align="right" valign="top">static void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1OpenSwathDataAccessHelper.html#abdfea944b47657cb07679cb723bb7d1e">convertToOpenMSSpectrum</a> (const <a class="el" href="namespaceOpenSwath.html#a93e7d6a13eb66ccae0357dbae6f33523">OpenSwath::SpectrumPtr</a> sptr, <a class="el" href="classOpenMS_1_1MSSpectrum.html">OpenMS::MSSpectrum</a>&lt;&gt; &amp;spectrum)</td></tr>
<tr class="memdesc:abdfea944b47657cb07679cb723bb7d1e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convert a SpectrumPtr to an <a class="el" href="namespaceOpenMS.html" title="Main OpenMS namespace. ">OpenMS</a> Spectrum.  <a href="#abdfea944b47657cb07679cb723bb7d1e">More...</a><br/></td></tr>
<tr class="separator:abdfea944b47657cb07679cb723bb7d1e"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a13d17d1899b239966950b8124acb38ae"><td class="memItemLeft" align="right" valign="top">static <a class="el" href="namespaceOpenSwath.html#a93e7d6a13eb66ccae0357dbae6f33523">OpenSwath::SpectrumPtr</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1OpenSwathDataAccessHelper.html#a13d17d1899b239966950b8124acb38ae">convertToSpectrumPtr</a> (const <a class="el" href="classOpenMS_1_1MSSpectrum.html">OpenMS::MSSpectrum</a>&lt;&gt; &amp;spectrum)</td></tr>
<tr class="memdesc:a13d17d1899b239966950b8124acb38ae"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convert an <a class="el" href="namespaceOpenMS.html" title="Main OpenMS namespace. ">OpenMS</a> Spectrum to an SpectrumPtr.  <a href="#a13d17d1899b239966950b8124acb38ae">More...</a><br/></td></tr>
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<tr class="memitem:a64343e3d648cde97d9d7970c08eea3f7"><td class="memItemLeft" align="right" valign="top">static void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1OpenSwathDataAccessHelper.html#a64343e3d648cde97d9d7970c08eea3f7">convertToOpenMSChromatogram</a> (<a class="el" href="classOpenMS_1_1MSChromatogram.html">OpenMS::MSChromatogram</a>&lt;&gt; &amp;chromatogram, const <a class="el" href="namespaceOpenSwath.html#a159d76e81a041373752ffca5f953a5ca">OpenSwath::ChromatogramPtr</a> cptr)</td></tr>
<tr class="memdesc:a64343e3d648cde97d9d7970c08eea3f7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convert a ChromatogramPtr to an <a class="el" href="namespaceOpenMS.html" title="Main OpenMS namespace. ">OpenMS</a> Chromatogram.  <a href="#a64343e3d648cde97d9d7970c08eea3f7">More...</a><br/></td></tr>
<tr class="separator:a64343e3d648cde97d9d7970c08eea3f7"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a0476f3ea925f584d9064efee48c7db6a"><td class="memItemLeft" align="right" valign="top">static void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1OpenSwathDataAccessHelper.html#a0476f3ea925f584d9064efee48c7db6a">convertTargetedExp</a> (const <a class="el" href="classOpenMS_1_1TargetedExperiment.html">OpenMS::TargetedExperiment</a> &amp;transition_exp_, <a class="el" href="structOpenSwath_1_1LightTargetedExperiment.html">OpenSwath::LightTargetedExperiment</a> &amp;transition_exp)</td></tr>
<tr class="memdesc:a0476f3ea925f584d9064efee48c7db6a"><td class="mdescLeft">&#160;</td><td class="mdescRight">convert from the <a class="el" href="namespaceOpenMS.html" title="Main OpenMS namespace. ">OpenMS</a> Targeted experiment to the light Targeted Experiment  <a href="#a0476f3ea925f584d9064efee48c7db6a">More...</a><br/></td></tr>
<tr class="separator:a0476f3ea925f584d9064efee48c7db6a"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a8ae154a5964d69f913d864b169b7310e"><td class="memItemLeft" align="right" valign="top">static void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1OpenSwathDataAccessHelper.html#a8ae154a5964d69f913d864b169b7310e">convertPeptideToAASequence</a> (const <a class="el" href="structOpenSwath_1_1LightPeptide.html">OpenSwath::LightPeptide</a> &amp;peptide, <a class="el" href="classOpenMS_1_1AASequence.html">AASequence</a> &amp;aa_sequence)</td></tr>
<tr class="memdesc:a8ae154a5964d69f913d864b169b7310e"><td class="mdescLeft">&#160;</td><td class="mdescRight">convert from the LightPeptide to an <a class="el" href="namespaceOpenMS.html" title="Main OpenMS namespace. ">OpenMS</a> <a class="el" href="classOpenMS_1_1AASequence.html" title="Representation of a peptide/protein sequence. ">AASequence</a> (with correct modifications)  <a href="#a8ae154a5964d69f913d864b169b7310e">More...</a><br/></td></tr>
<tr class="separator:a8ae154a5964d69f913d864b169b7310e"><td class="memSeparator" colspan="2">&#160;</td></tr>
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>Several helpers to convert <a class="el" href="namespaceOpenMS.html" title="Main OpenMS namespace. ">OpenMS</a> datastructures to structures that implement the OpenSWATH interfaces. </p>
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          <td class="memname">static void convertPeptideToAASequence </td>
          <td>(</td>
          <td class="paramtype">const <a class="el" href="structOpenSwath_1_1LightPeptide.html">OpenSwath::LightPeptide</a> &amp;&#160;</td>
          <td class="paramname"><em>peptide</em>, </td>
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          <td class="paramkey"></td>
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          <td class="paramtype"><a class="el" href="classOpenMS_1_1AASequence.html">AASequence</a> &amp;&#160;</td>
          <td class="paramname"><em>aa_sequence</em>&#160;</td>
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<p>convert from the LightPeptide to an <a class="el" href="namespaceOpenMS.html" title="Main OpenMS namespace. ">OpenMS</a> <a class="el" href="classOpenMS_1_1AASequence.html" title="Representation of a peptide/protein sequence. ">AASequence</a> (with correct modifications) </p>

<p>Referenced by <a class="el" href="classOpenMS_1_1MRMFeatureFinderScoring.html#a7aa7123edb723725ec69f259c69d46d0">MRMFeatureFinderScoring::calculateSwathScores_()</a>.</p>

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          <td class="memname">static void convertTargetedExp </td>
          <td>(</td>
          <td class="paramtype">const <a class="el" href="classOpenMS_1_1TargetedExperiment.html">OpenMS::TargetedExperiment</a> &amp;&#160;</td>
          <td class="paramname"><em>transition_exp_</em>, </td>
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          <td class="paramkey"></td>
          <td></td>
          <td class="paramtype"><a class="el" href="structOpenSwath_1_1LightTargetedExperiment.html">OpenSwath::LightTargetedExperiment</a> &amp;&#160;</td>
          <td class="paramname"><em>transition_exp</em>&#160;</td>
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<p>convert from the <a class="el" href="namespaceOpenMS.html" title="Main OpenMS namespace. ">OpenMS</a> Targeted experiment to the light Targeted Experiment </p>

<p>Referenced by <a class="el" href="classOpenMS_1_1MRMFeatureFinderScoring.html#af879ba2bc9bcc83bed021af39c24e9d6">MRMFeatureFinderScoring::pickExperiment()</a>.</p>

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          <td class="memname">static void convertToOpenMSChromatogram </td>
          <td>(</td>
          <td class="paramtype"><a class="el" href="classOpenMS_1_1MSChromatogram.html">OpenMS::MSChromatogram</a>&lt;&gt; &amp;&#160;</td>
          <td class="paramname"><em>chromatogram</em>, </td>
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          <td class="paramtype">const <a class="el" href="namespaceOpenSwath.html#a159d76e81a041373752ffca5f953a5ca">OpenSwath::ChromatogramPtr</a>&#160;</td>
          <td class="paramname"><em>cptr</em>&#160;</td>
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<p>Convert a ChromatogramPtr to an <a class="el" href="namespaceOpenMS.html" title="Main OpenMS namespace. ">OpenMS</a> Chromatogram. </p>

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          <td class="memname">static void convertToOpenMSSpectrum </td>
          <td>(</td>
          <td class="paramtype">const <a class="el" href="namespaceOpenSwath.html#a93e7d6a13eb66ccae0357dbae6f33523">OpenSwath::SpectrumPtr</a>&#160;</td>
          <td class="paramname"><em>sptr</em>, </td>
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          <td></td>
          <td class="paramtype"><a class="el" href="classOpenMS_1_1MSSpectrum.html">OpenMS::MSSpectrum</a>&lt;&gt; &amp;&#160;</td>
          <td class="paramname"><em>spectrum</em>&#160;</td>
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<p>Convert a SpectrumPtr to an <a class="el" href="namespaceOpenMS.html" title="Main OpenMS namespace. ">OpenMS</a> Spectrum. </p>

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          <td class="memname">static <a class="el" href="namespaceOpenSwath.html#a93e7d6a13eb66ccae0357dbae6f33523">OpenSwath::SpectrumPtr</a> convertToSpectrumPtr </td>
          <td>(</td>
          <td class="paramtype">const <a class="el" href="classOpenMS_1_1MSSpectrum.html">OpenMS::MSSpectrum</a>&lt;&gt; &amp;&#160;</td>
          <td class="paramname"><em>spectrum</em></td><td>)</td>
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<p>Convert an <a class="el" href="namespaceOpenMS.html" title="Main OpenMS namespace. ">OpenMS</a> Spectrum to an SpectrumPtr. </p>

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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:26 using doxygen 1.8.5</font></TD>
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