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<HTML>
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<TITLE>ParamXMLFile Class Reference</TITLE>
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<li class="navelem"><a class="el" href="namespaceOpenMS.html">OpenMS</a></li><li class="navelem"><a class="el" href="classOpenMS_1_1ParamXMLFile.html">ParamXMLFile</a></li> </ul>
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<a href="#pub-methods">Public Member Functions</a> |
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<div class="title">ParamXMLFile Class Reference</div> </div>
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<p>The file pendant of the <a class="el" href="classOpenMS_1_1Param.html" title="Management and storage of parameters / INI files. ">Param</a> class used to load and store the param datastructure as paramXML.
<a href="classOpenMS_1_1ParamXMLFile.html#details">More...</a></p>
<p><code>#include <<a class="el" href="ParamXMLFile_8h_source.html">OpenMS/FORMAT/ParamXMLFile.h</a>></code></p>
<div class="dynheader">
Inheritance diagram for ParamXMLFile:</div>
<div class="dyncontent">
<div class="center">
<img src="classOpenMS_1_1ParamXMLFile.png" usemap="#ParamXMLFile_map" alt=""/>
<map id="ParamXMLFile_map" name="ParamXMLFile_map">
<area href="classOpenMS_1_1Internal_1_1XMLFile.html" title="Base class for loading/storing XML files that have a handler derived from XMLHandler. " alt="XMLFile" shape="rect" coords="0,0,96,24"/>
</map>
</div></div>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:a8a335ca795228b8f91cfa1822e68bac6"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ParamXMLFile.html#a8a335ca795228b8f91cfa1822e68bac6">ParamXMLFile</a> ()</td></tr>
<tr class="memdesc:a8a335ca795228b8f91cfa1822e68bac6"><td class="mdescLeft"> </td><td class="mdescRight">Constructor. <a href="#a8a335ca795228b8f91cfa1822e68bac6">More...</a><br/></td></tr>
<tr class="separator:a8a335ca795228b8f91cfa1822e68bac6"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:abc2449ecf46bffe99727fc2c1df21079"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ParamXMLFile.html#abc2449ecf46bffe99727fc2c1df21079">store</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &filename, const <a class="el" href="classOpenMS_1_1Param.html">Param</a> &param) const </td></tr>
<tr class="memdesc:abc2449ecf46bffe99727fc2c1df21079"><td class="mdescLeft"> </td><td class="mdescRight">Write XML file. <a href="#abc2449ecf46bffe99727fc2c1df21079">More...</a><br/></td></tr>
<tr class="separator:abc2449ecf46bffe99727fc2c1df21079"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ac968fd49a2fc2e091f88ddc8bc61c8a9"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ParamXMLFile.html#ac968fd49a2fc2e091f88ddc8bc61c8a9">writeXMLToStream</a> (std::ostream *os_ptr, const <a class="el" href="classOpenMS_1_1Param.html">Param</a> &param) const </td></tr>
<tr class="memdesc:ac968fd49a2fc2e091f88ddc8bc61c8a9"><td class="mdescLeft"> </td><td class="mdescRight">Write XML to output stream. <a href="#ac968fd49a2fc2e091f88ddc8bc61c8a9">More...</a><br/></td></tr>
<tr class="separator:ac968fd49a2fc2e091f88ddc8bc61c8a9"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a33d473d4424809f7699ff36c3db3c046"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ParamXMLFile.html#a33d473d4424809f7699ff36c3db3c046">load</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &filename, <a class="el" href="classOpenMS_1_1Param.html">Param</a> &param)</td></tr>
<tr class="memdesc:a33d473d4424809f7699ff36c3db3c046"><td class="mdescLeft"> </td><td class="mdescRight">Read XML file. <a href="#a33d473d4424809f7699ff36c3db3c046">More...</a><br/></td></tr>
<tr class="separator:a33d473d4424809f7699ff36c3db3c046"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_methods_classOpenMS_1_1Internal_1_1XMLFile"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classOpenMS_1_1Internal_1_1XMLFile')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classOpenMS_1_1Internal_1_1XMLFile.html">XMLFile</a></td></tr>
<tr class="memitem:a5288a663fb130ba112c205bd7c556fd4 inherit pub_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLFile.html#a5288a663fb130ba112c205bd7c556fd4">XMLFile</a> ()</td></tr>
<tr class="memdesc:a5288a663fb130ba112c205bd7c556fd4 inherit pub_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="mdescLeft"> </td><td class="mdescRight">Default constructor. <a href="#a5288a663fb130ba112c205bd7c556fd4">More...</a><br/></td></tr>
<tr class="separator:a5288a663fb130ba112c205bd7c556fd4 inherit pub_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ab6a2f018df297124fba778512994282a inherit pub_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLFile.html#ab6a2f018df297124fba778512994282a">XMLFile</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &schema_location, const <a class="el" href="classOpenMS_1_1String.html">String</a> &version)</td></tr>
<tr class="memdesc:ab6a2f018df297124fba778512994282a inherit pub_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="mdescLeft"> </td><td class="mdescRight">Constructor that sets the schema location. <a href="#ab6a2f018df297124fba778512994282a">More...</a><br/></td></tr>
<tr class="separator:ab6a2f018df297124fba778512994282a inherit pub_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae64064342fc97bdd2008c5a91cd6d9de inherit pub_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLFile.html#ae64064342fc97bdd2008c5a91cd6d9de">~XMLFile</a> ()</td></tr>
<tr class="memdesc:ae64064342fc97bdd2008c5a91cd6d9de inherit pub_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="mdescLeft"> </td><td class="mdescRight">Destructor. <a href="#ae64064342fc97bdd2008c5a91cd6d9de">More...</a><br/></td></tr>
<tr class="separator:ae64064342fc97bdd2008c5a91cd6d9de inherit pub_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a2f3216da86d8ced03f1b102a5c2e886c inherit pub_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLFile.html#a2f3216da86d8ced03f1b102a5c2e886c">isValid</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &filename, std::ostream &os=std::cerr)</td></tr>
<tr class="memdesc:a2f3216da86d8ced03f1b102a5c2e886c inherit pub_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="mdescLeft"> </td><td class="mdescRight">Checks if a file validates against the XML schema. <a href="#a2f3216da86d8ced03f1b102a5c2e886c">More...</a><br/></td></tr>
<tr class="separator:a2f3216da86d8ced03f1b102a5c2e886c inherit pub_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae6b3b4b6857bc1987282e2f29611dd41 inherit pub_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1String.html">String</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLFile.html#ae6b3b4b6857bc1987282e2f29611dd41">getVersion</a> () const </td></tr>
<tr class="memdesc:ae6b3b4b6857bc1987282e2f29611dd41 inherit pub_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="mdescLeft"> </td><td class="mdescRight">return the version of the schema <a href="#ae6b3b4b6857bc1987282e2f29611dd41">More...</a><br/></td></tr>
<tr class="separator:ae6b3b4b6857bc1987282e2f29611dd41 inherit pub_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="inherited"></a>
Additional Inherited Members</h2></td></tr>
<tr class="inherit_header pro_methods_classOpenMS_1_1Internal_1_1XMLFile"><td colspan="2" onclick="javascript:toggleInherit('pro_methods_classOpenMS_1_1Internal_1_1XMLFile')"><img src="closed.png" alt="-"/> Protected Member Functions inherited from <a class="el" href="classOpenMS_1_1Internal_1_1XMLFile.html">XMLFile</a></td></tr>
<tr class="memitem:ab08cc6e67bde4d478045ece950deb32b inherit pro_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLFile.html#ab08cc6e67bde4d478045ece950deb32b">parse_</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &filename, <a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html">XMLHandler</a> *handler)</td></tr>
<tr class="memdesc:ab08cc6e67bde4d478045ece950deb32b inherit pro_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="mdescLeft"> </td><td class="mdescRight">Parses the XML file given by <code>filename</code> using the handler given by <code>handler</code>. <a href="#ab08cc6e67bde4d478045ece950deb32b">More...</a><br/></td></tr>
<tr class="separator:ab08cc6e67bde4d478045ece950deb32b inherit pro_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aa99a8fa1726ecc3b865167eea1c17db7 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLFile.html#aa99a8fa1726ecc3b865167eea1c17db7">save_</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &filename, <a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html">XMLHandler</a> *handler) const </td></tr>
<tr class="memdesc:aa99a8fa1726ecc3b865167eea1c17db7 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="mdescLeft"> </td><td class="mdescRight">Stores the contents of the XML handler given by <code>handler</code> in the file given by <code>filename</code>. <a href="#aa99a8fa1726ecc3b865167eea1c17db7">More...</a><br/></td></tr>
<tr class="separator:aa99a8fa1726ecc3b865167eea1c17db7 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a97478c2a7b5ed960dae2ac5da0c03045 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLFile.html#a97478c2a7b5ed960dae2ac5da0c03045">enforceEncoding_</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &encoding)</td></tr>
<tr class="separator:a97478c2a7b5ed960dae2ac5da0c03045 inherit pro_methods_classOpenMS_1_1Internal_1_1XMLFile"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pro_attribs_classOpenMS_1_1Internal_1_1XMLFile"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classOpenMS_1_1Internal_1_1XMLFile')"><img src="closed.png" alt="-"/> Protected Attributes inherited from <a class="el" href="classOpenMS_1_1Internal_1_1XMLFile.html">XMLFile</a></td></tr>
<tr class="memitem:aea8dd5b28e6057c3e2b3f296966431c3 inherit pro_attribs_classOpenMS_1_1Internal_1_1XMLFile"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLFile.html#aea8dd5b28e6057c3e2b3f296966431c3">schema_location_</a></td></tr>
<tr class="memdesc:aea8dd5b28e6057c3e2b3f296966431c3 inherit pro_attribs_classOpenMS_1_1Internal_1_1XMLFile"><td class="mdescLeft"> </td><td class="mdescRight">XML schema file location. <a href="#aea8dd5b28e6057c3e2b3f296966431c3">More...</a><br/></td></tr>
<tr class="separator:aea8dd5b28e6057c3e2b3f296966431c3 inherit pro_attribs_classOpenMS_1_1Internal_1_1XMLFile"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a5a33231ac1616a429e6533af15231951 inherit pro_attribs_classOpenMS_1_1Internal_1_1XMLFile"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLFile.html#a5a33231ac1616a429e6533af15231951">schema_version_</a></td></tr>
<tr class="memdesc:a5a33231ac1616a429e6533af15231951 inherit pro_attribs_classOpenMS_1_1Internal_1_1XMLFile"><td class="mdescLeft"> </td><td class="mdescRight">Version string. <a href="#a5a33231ac1616a429e6533af15231951">More...</a><br/></td></tr>
<tr class="separator:a5a33231ac1616a429e6533af15231951 inherit pro_attribs_classOpenMS_1_1Internal_1_1XMLFile"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a6b0159bfc4bc3062d47825cccfeec9cd inherit pro_attribs_classOpenMS_1_1Internal_1_1XMLFile"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Internal_1_1XMLFile.html#a6b0159bfc4bc3062d47825cccfeec9cd">enforced_encoding_</a></td></tr>
<tr class="memdesc:a6b0159bfc4bc3062d47825cccfeec9cd inherit pro_attribs_classOpenMS_1_1Internal_1_1XMLFile"><td class="mdescLeft"> </td><td class="mdescRight">Encoding string that replaces the encoding (system dependend or specified in the XML). Disabled if empty. Used as a workaround for XTandem output xml. <a href="#a6b0159bfc4bc3062d47825cccfeec9cd">More...</a><br/></td></tr>
<tr class="separator:a6b0159bfc4bc3062d47825cccfeec9cd inherit pro_attribs_classOpenMS_1_1Internal_1_1XMLFile"><td class="memSeparator" colspan="2"> </td></tr>
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>The file pendant of the <a class="el" href="classOpenMS_1_1Param.html" title="Management and storage of parameters / INI files. ">Param</a> class used to load and store the param datastructure as paramXML. </p>
</div><h2 class="groupheader">Constructor & Destructor Documentation</h2>
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<td class="memname"><a class="el" href="classOpenMS_1_1ParamXMLFile.html">ParamXMLFile</a> </td>
<td>(</td>
<td class="paramname"></td><td>)</td>
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<p>Constructor. </p>
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<h2 class="groupheader">Member Function Documentation</h2>
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<td class="memname">void load </td>
<td>(</td>
<td class="paramtype">const <a class="el" href="classOpenMS_1_1String.html">String</a> & </td>
<td class="paramname"><em>filename</em>, </td>
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<td class="paramkey"></td>
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<td class="paramtype"><a class="el" href="classOpenMS_1_1Param.html">Param</a> & </td>
<td class="paramname"><em>param</em> </td>
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<p>Read XML file. </p>
<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">filename</td><td>The file from where to read the <a class="el" href="classOpenMS_1_1Param.html" title="Management and storage of parameters / INI files. ">Param</a> object. </td></tr>
<tr><td class="paramname">param</td><td>The param object where the read data should be stored.</td></tr>
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<dl class="exception"><dt>Exceptions</dt><dd>
<table class="exception">
<tr><td class="paramname"><a class="el" href="classOpenMS_1_1Exception_1_1FileNotFound.html" title="File not found exception. ">Exception::FileNotFound</a></td><td>is thrown if the file could not be found </td></tr>
<tr><td class="paramname"><a class="el" href="classOpenMS_1_1Exception_1_1ParseError.html" title="Parse Error exception. ">Exception::ParseError</a></td><td>is thrown if an error occurs during parsing </td></tr>
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</dd>
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<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a4eecbb3c7b39a36a9f365e4dc2a89387">TOPPASBase::loadPreferences()</a>, <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a4eecbb3c7b39a36a9f365e4dc2a89387">TOPPViewBase::loadPreferences()</a>, <a class="el" href="INIFileEditor_8C.html#a217dbf8b442f20279ea00b898af96f52">main()</a>, and <a class="el" href="classOpenMS_1_1INIFileEditorWindow.html#a842f9ec8bfd7bb9a5acac8212d593cba">INIFileEditorWindow::openFile()</a>.</p>
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<td class="memname">void store </td>
<td>(</td>
<td class="paramtype">const <a class="el" href="classOpenMS_1_1String.html">String</a> & </td>
<td class="paramname"><em>filename</em>, </td>
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<td class="paramkey"></td>
<td></td>
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<td class="paramname"><em>param</em> </td>
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<td></td>
<td>)</td>
<td></td><td> const</td>
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<p>Write XML file. </p>
<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">filename</td><td>The filename where the param data structure should be stored. </td></tr>
<tr><td class="paramname">param</td><td>The <a class="el" href="classOpenMS_1_1Param.html" title="Management and storage of parameters / INI files. ">Param</a> class that should be stored in the file.</td></tr>
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<dl class="exception"><dt>Exceptions</dt><dd>
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<tr><td class="paramname"><a class="el" href="classOpenMS_1_1Exception_1_1UnableToCreateFile.html" title="Unable to create file exception. ">Exception::UnableToCreateFile</a></td><td>is thrown if the file could not be created </td></tr>
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<p>Referenced by <a class="el" href="classOpenMS_1_1INIFileEditorWindow.html#af41570deb3dd3d8aa9c5d8be5cf2eb50">INIFileEditorWindow::saveFile()</a>, <a class="el" href="classOpenMS_1_1INIFileEditorWindow.html#ab0ebf393b95cb80b51232c124deec65f">INIFileEditorWindow::saveFileAs()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a23668b43705781c1cd284bda6ab40abc">TOPPASBase::savePreferences()</a>, and <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a23668b43705781c1cd284bda6ab40abc">TOPPViewBase::savePreferences()</a>.</p>
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<td class="memname">void writeXMLToStream </td>
<td>(</td>
<td class="paramtype">std::ostream * </td>
<td class="paramname"><em>os_ptr</em>, </td>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">const <a class="el" href="classOpenMS_1_1Param.html">Param</a> & </td>
<td class="paramname"><em>param</em> </td>
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<td>)</td>
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<p>Write XML to output stream. </p>
<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">os_ptr</td><td>The stream where the param class should be written to. </td></tr>
<tr><td class="paramname">param</td><td>The <a class="el" href="classOpenMS_1_1Param.html" title="Management and storage of parameters / INI files. ">Param</a> class that should be written to the stream. </td></tr>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:31 using doxygen 1.8.5</font></TD>
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