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<li class="navelem"><a class="el" href="namespaceOpenMS.html">OpenMS</a></li><li class="navelem"><a class="el" href="classOpenMS_1_1PeptideIdentification.html">PeptideIdentification</a></li> </ul>
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<p>Represents the peptide hits for a spectrum.
<a href="classOpenMS_1_1PeptideIdentification.html#details">More...</a></p>
<p><code>#include <<a class="el" href="PeptideIdentification_8h_source.html">OpenMS/METADATA/PeptideIdentification.h</a>></code></p>
<div class="dynheader">
Inheritance diagram for PeptideIdentification:</div>
<div class="dyncontent">
<div class="center">
<img src="classOpenMS_1_1PeptideIdentification.png" usemap="#PeptideIdentification_map" alt=""/>
<map id="PeptideIdentification_map" name="PeptideIdentification_map">
<area href="classOpenMS_1_1MetaInfoInterface.html" title="Interface for classes that can store arbitrary meta information (Type-Name-Value tuples). " alt="MetaInfoInterface" shape="rect" coords="0,0,125,24"/>
</map>
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<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-types"></a>
Public Types</h2></td></tr>
<tr class="memitem:a274bec67c485db1aae67a8d12d2ca296"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1PeptideHit.html">PeptideHit</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeptideIdentification.html#a274bec67c485db1aae67a8d12d2ca296">HitType</a></td></tr>
<tr class="memdesc:a274bec67c485db1aae67a8d12d2ca296"><td class="mdescLeft"> </td><td class="mdescRight">Hit type definition. <a href="#a274bec67c485db1aae67a8d12d2ca296">More...</a><br/></td></tr>
<tr class="separator:a274bec67c485db1aae67a8d12d2ca296"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:a564d2725cd06914a922d6fbda8be8a13"><td class="memItemLeft" align="right" valign="top">const std::vector< <a class="el" href="classOpenMS_1_1PeptideHit.html">PeptideHit</a> > & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeptideIdentification.html#a564d2725cd06914a922d6fbda8be8a13">getHits</a> () const </td></tr>
<tr class="memdesc:a564d2725cd06914a922d6fbda8be8a13"><td class="mdescLeft"> </td><td class="mdescRight">returns the peptide hits <a href="#a564d2725cd06914a922d6fbda8be8a13">More...</a><br/></td></tr>
<tr class="separator:a564d2725cd06914a922d6fbda8be8a13"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae558057222f754e972e0257de2fe3c2d"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeptideIdentification.html#ae558057222f754e972e0257de2fe3c2d">insertHit</a> (const <a class="el" href="classOpenMS_1_1PeptideHit.html">PeptideHit</a> &hit)</td></tr>
<tr class="memdesc:ae558057222f754e972e0257de2fe3c2d"><td class="mdescLeft"> </td><td class="mdescRight">Appends a peptide hit. <a href="#ae558057222f754e972e0257de2fe3c2d">More...</a><br/></td></tr>
<tr class="separator:ae558057222f754e972e0257de2fe3c2d"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ab4d15b02dbc53727d0b6dae927ad6688"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeptideIdentification.html#ab4d15b02dbc53727d0b6dae927ad6688">setHits</a> (const std::vector< <a class="el" href="classOpenMS_1_1PeptideHit.html">PeptideHit</a> > &hits)</td></tr>
<tr class="memdesc:ab4d15b02dbc53727d0b6dae927ad6688"><td class="mdescLeft"> </td><td class="mdescRight">Sets the peptide hits. <a href="#ab4d15b02dbc53727d0b6dae927ad6688">More...</a><br/></td></tr>
<tr class="separator:ab4d15b02dbc53727d0b6dae927ad6688"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae4816d8a2a93d47bb52174f16eaf9bed"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeptideIdentification.html#ae4816d8a2a93d47bb52174f16eaf9bed">getSignificanceThreshold</a> () const </td></tr>
<tr class="memdesc:ae4816d8a2a93d47bb52174f16eaf9bed"><td class="mdescLeft"> </td><td class="mdescRight">returns the peptide significance threshold value <a href="#ae4816d8a2a93d47bb52174f16eaf9bed">More...</a><br/></td></tr>
<tr class="separator:ae4816d8a2a93d47bb52174f16eaf9bed"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a8abccfc6fb1eceb2a2c43f17055a9360"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeptideIdentification.html#a8abccfc6fb1eceb2a2c43f17055a9360">setSignificanceThreshold</a> (<a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> value)</td></tr>
<tr class="memdesc:a8abccfc6fb1eceb2a2c43f17055a9360"><td class="mdescLeft"> </td><td class="mdescRight">setting of the peptide significance threshold value <a href="#a8abccfc6fb1eceb2a2c43f17055a9360">More...</a><br/></td></tr>
<tr class="separator:a8abccfc6fb1eceb2a2c43f17055a9360"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a6130c01a7439bfe9462b8d52507861c4"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeptideIdentification.html#a6130c01a7439bfe9462b8d52507861c4">getScoreType</a> () const </td></tr>
<tr class="memdesc:a6130c01a7439bfe9462b8d52507861c4"><td class="mdescLeft"> </td><td class="mdescRight">returns the peptide score type <a href="#a6130c01a7439bfe9462b8d52507861c4">More...</a><br/></td></tr>
<tr class="separator:a6130c01a7439bfe9462b8d52507861c4"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a915462ec4a7a731fdd71f28e8a3463b1"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeptideIdentification.html#a915462ec4a7a731fdd71f28e8a3463b1">setScoreType</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &type)</td></tr>
<tr class="memdesc:a915462ec4a7a731fdd71f28e8a3463b1"><td class="mdescLeft"> </td><td class="mdescRight">sets the peptide score type <a href="#a915462ec4a7a731fdd71f28e8a3463b1">More...</a><br/></td></tr>
<tr class="separator:a915462ec4a7a731fdd71f28e8a3463b1"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a7ae34a5d293424fbf091a3fa7218ccfb"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeptideIdentification.html#a7ae34a5d293424fbf091a3fa7218ccfb">isHigherScoreBetter</a> () const </td></tr>
<tr class="memdesc:a7ae34a5d293424fbf091a3fa7218ccfb"><td class="mdescLeft"> </td><td class="mdescRight">returns the peptide score orientation <a href="#a7ae34a5d293424fbf091a3fa7218ccfb">More...</a><br/></td></tr>
<tr class="separator:a7ae34a5d293424fbf091a3fa7218ccfb"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a98447dc4641b69db36fcc5087cfe73e6"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeptideIdentification.html#a98447dc4641b69db36fcc5087cfe73e6">setHigherScoreBetter</a> (bool value)</td></tr>
<tr class="memdesc:a98447dc4641b69db36fcc5087cfe73e6"><td class="mdescLeft"> </td><td class="mdescRight">sets the peptide score orientation <a href="#a98447dc4641b69db36fcc5087cfe73e6">More...</a><br/></td></tr>
<tr class="separator:a98447dc4641b69db36fcc5087cfe73e6"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a4eb8ec8636a89f575db95a370fd480b6"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1String.html">String</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeptideIdentification.html#a4eb8ec8636a89f575db95a370fd480b6">getIdentifier</a> () const </td></tr>
<tr class="memdesc:a4eb8ec8636a89f575db95a370fd480b6"><td class="mdescLeft"> </td><td class="mdescRight">returns the identifier <a href="#a4eb8ec8636a89f575db95a370fd480b6">More...</a><br/></td></tr>
<tr class="separator:a4eb8ec8636a89f575db95a370fd480b6"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a00f1456779f764c2738c35be2c04f6e8"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeptideIdentification.html#a00f1456779f764c2738c35be2c04f6e8">setIdentifier</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &id)</td></tr>
<tr class="memdesc:a00f1456779f764c2738c35be2c04f6e8"><td class="mdescLeft"> </td><td class="mdescRight">sets the indentifier <a href="#a00f1456779f764c2738c35be2c04f6e8">More...</a><br/></td></tr>
<tr class="separator:a00f1456779f764c2738c35be2c04f6e8"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aa79958ac1cf2cb1fc4b9ae1cd766cfcb"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeptideIdentification.html#aa79958ac1cf2cb1fc4b9ae1cd766cfcb">assignRanks</a> ()</td></tr>
<tr class="memdesc:aa79958ac1cf2cb1fc4b9ae1cd766cfcb"><td class="mdescLeft"> </td><td class="mdescRight">Sorts the hits by score and assigns ranks coording to the scores. <a href="#aa79958ac1cf2cb1fc4b9ae1cd766cfcb">More...</a><br/></td></tr>
<tr class="separator:aa79958ac1cf2cb1fc4b9ae1cd766cfcb"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a47fdc9eea42b6975cdc835bb2e08810e"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeptideIdentification.html#a47fdc9eea42b6975cdc835bb2e08810e">sort</a> ()</td></tr>
<tr class="memdesc:a47fdc9eea42b6975cdc835bb2e08810e"><td class="mdescLeft"> </td><td class="mdescRight">Sorts the hits by score. <a href="#a47fdc9eea42b6975cdc835bb2e08810e">More...</a><br/></td></tr>
<tr class="separator:a47fdc9eea42b6975cdc835bb2e08810e"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ac6e61de369e994009e36f344f99c15ad"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeptideIdentification.html#ac6e61de369e994009e36f344f99c15ad">empty</a> () const </td></tr>
<tr class="memdesc:ac6e61de369e994009e36f344f99c15ad"><td class="mdescLeft"> </td><td class="mdescRight">Returns if this <a class="el" href="classOpenMS_1_1PeptideIdentification.html" title="Represents the peptide hits for a spectrum. ">PeptideIdentification</a> result is empty. <a href="#ac6e61de369e994009e36f344f99c15ad">More...</a><br/></td></tr>
<tr class="separator:ac6e61de369e994009e36f344f99c15ad"><td class="memSeparator" colspan="2"> </td></tr>
<tr><td colspan="2"><div class="groupHeader">constructors,destructors,assignment operator</div></td></tr>
<tr class="memitem:a46a44bce76bc784d959c63d0be6b0bda"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeptideIdentification.html#a46a44bce76bc784d959c63d0be6b0bda">PeptideIdentification</a> ()</td></tr>
<tr class="memdesc:a46a44bce76bc784d959c63d0be6b0bda"><td class="mdescLeft"> </td><td class="mdescRight">default constructor <a href="#a46a44bce76bc784d959c63d0be6b0bda">More...</a><br/></td></tr>
<tr class="separator:a46a44bce76bc784d959c63d0be6b0bda"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a71207567e87c177f1c125f29bdd1fb6d"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeptideIdentification.html#a71207567e87c177f1c125f29bdd1fb6d">~PeptideIdentification</a> ()</td></tr>
<tr class="memdesc:a71207567e87c177f1c125f29bdd1fb6d"><td class="mdescLeft"> </td><td class="mdescRight">destructor <a href="#a71207567e87c177f1c125f29bdd1fb6d">More...</a><br/></td></tr>
<tr class="separator:a71207567e87c177f1c125f29bdd1fb6d"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a15f54673ddc014c6657946643f4b5885"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeptideIdentification.html#a15f54673ddc014c6657946643f4b5885">PeptideIdentification</a> (const <a class="el" href="classOpenMS_1_1PeptideIdentification.html">PeptideIdentification</a> &source)</td></tr>
<tr class="memdesc:a15f54673ddc014c6657946643f4b5885"><td class="mdescLeft"> </td><td class="mdescRight">copy constructor <a href="#a15f54673ddc014c6657946643f4b5885">More...</a><br/></td></tr>
<tr class="separator:a15f54673ddc014c6657946643f4b5885"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a6e30d610fa45531d3b85f22855a965e2"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1PeptideIdentification.html">PeptideIdentification</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeptideIdentification.html#a6e30d610fa45531d3b85f22855a965e2">operator=</a> (const <a class="el" href="classOpenMS_1_1PeptideIdentification.html">PeptideIdentification</a> &source)</td></tr>
<tr class="memdesc:a6e30d610fa45531d3b85f22855a965e2"><td class="mdescLeft"> </td><td class="mdescRight">assignment operator <a href="#a6e30d610fa45531d3b85f22855a965e2">More...</a><br/></td></tr>
<tr class="separator:a6e30d610fa45531d3b85f22855a965e2"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a86c5dca3c558d5242ba42151b28b0dad"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeptideIdentification.html#a86c5dca3c558d5242ba42151b28b0dad">operator==</a> (const <a class="el" href="classOpenMS_1_1PeptideIdentification.html">PeptideIdentification</a> &rhs) const </td></tr>
<tr class="memdesc:a86c5dca3c558d5242ba42151b28b0dad"><td class="mdescLeft"> </td><td class="mdescRight">Equality operator. <a href="#a86c5dca3c558d5242ba42151b28b0dad">More...</a><br/></td></tr>
<tr class="separator:a86c5dca3c558d5242ba42151b28b0dad"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:afb57ca0d336467c9ade5b3dffb8076b2"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeptideIdentification.html#afb57ca0d336467c9ade5b3dffb8076b2">operator!=</a> (const <a class="el" href="classOpenMS_1_1PeptideIdentification.html">PeptideIdentification</a> &rhs) const </td></tr>
<tr class="memdesc:afb57ca0d336467c9ade5b3dffb8076b2"><td class="mdescLeft"> </td><td class="mdescRight">Inequality operator. <a href="#afb57ca0d336467c9ade5b3dffb8076b2">More...</a><br/></td></tr>
<tr class="separator:afb57ca0d336467c9ade5b3dffb8076b2"><td class="memSeparator" colspan="2"> </td></tr>
<tr><td colspan="2"><div class="groupHeader">Methods for linking peptide and protein hits</div></td></tr>
<tr class="memitem:aee8d62170b7ce37aae32b44eebde353a"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeptideIdentification.html#aee8d62170b7ce37aae32b44eebde353a">getReferencingHits</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &protein_accession, std::vector< <a class="el" href="classOpenMS_1_1PeptideHit.html">PeptideHit</a> > &peptide_hits) const </td></tr>
<tr class="memdesc:aee8d62170b7ce37aae32b44eebde353a"><td class="mdescLeft"> </td><td class="mdescRight">finds and inserts all peptide hits which reference to a given protein accession <a href="#aee8d62170b7ce37aae32b44eebde353a">More...</a><br/></td></tr>
<tr class="separator:aee8d62170b7ce37aae32b44eebde353a"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a8804c99d11b40ef57d32dff94d05179e"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeptideIdentification.html#a8804c99d11b40ef57d32dff94d05179e">getReferencingHits</a> (const std::vector< <a class="el" href="classOpenMS_1_1String.html">String</a> > &accessions, std::vector< <a class="el" href="classOpenMS_1_1PeptideHit.html">PeptideHit</a> > &peptide_hits) const </td></tr>
<tr class="memdesc:a8804c99d11b40ef57d32dff94d05179e"><td class="mdescLeft"> </td><td class="mdescRight">finds and inserts all peptide hits which reference to a given list of protein accessions <a href="#a8804c99d11b40ef57d32dff94d05179e">More...</a><br/></td></tr>
<tr class="separator:a8804c99d11b40ef57d32dff94d05179e"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a41b3abb1f494293fac0391a774ff1798"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeptideIdentification.html#a41b3abb1f494293fac0391a774ff1798">getReferencingHits</a> (const std::vector< <a class="el" href="classOpenMS_1_1ProteinHit.html">ProteinHit</a> > &protein_hits, std::vector< <a class="el" href="classOpenMS_1_1PeptideHit.html">PeptideHit</a> > &peptide_hits) const </td></tr>
<tr class="memdesc:a41b3abb1f494293fac0391a774ff1798"><td class="mdescLeft"> </td><td class="mdescRight">finds and inserts all peptide hits which reference to a given list of proteins (via their accessions) <a href="#a41b3abb1f494293fac0391a774ff1798">More...</a><br/></td></tr>
<tr class="separator:a41b3abb1f494293fac0391a774ff1798"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a8ae4c09eedb9923e46f9bb5017832a95"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeptideIdentification.html#a8ae4c09eedb9923e46f9bb5017832a95">getNonReferencingHits</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &protein_accession, std::vector< <a class="el" href="classOpenMS_1_1PeptideHit.html">PeptideHit</a> > &peptide_hits) const </td></tr>
<tr class="memdesc:a8ae4c09eedb9923e46f9bb5017832a95"><td class="mdescLeft"> </td><td class="mdescRight">the complement of the above <a href="#a8ae4c09eedb9923e46f9bb5017832a95">More...</a><br/></td></tr>
<tr class="separator:a8ae4c09eedb9923e46f9bb5017832a95"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:adf44477834f25f0e27f75ed96fb7952d"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeptideIdentification.html#adf44477834f25f0e27f75ed96fb7952d">getNonReferencingHits</a> (const std::vector< <a class="el" href="classOpenMS_1_1String.html">String</a> > &accessions, std::vector< <a class="el" href="classOpenMS_1_1PeptideHit.html">PeptideHit</a> > &peptide_hits) const </td></tr>
<tr class="separator:adf44477834f25f0e27f75ed96fb7952d"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a537d61ea34d7c8f5c0aef83f73d70bf5"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeptideIdentification.html#a537d61ea34d7c8f5c0aef83f73d70bf5">getNonReferencingHits</a> (const std::vector< <a class="el" href="classOpenMS_1_1ProteinHit.html">ProteinHit</a> > &protein_hits, std::vector< <a class="el" href="classOpenMS_1_1PeptideHit.html">PeptideHit</a> > &peptide_hits) const </td></tr>
<tr class="separator:a537d61ea34d7c8f5c0aef83f73d70bf5"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_methods_classOpenMS_1_1MetaInfoInterface"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classOpenMS_1_1MetaInfoInterface')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classOpenMS_1_1MetaInfoInterface.html">MetaInfoInterface</a></td></tr>
<tr class="memitem:a4adf02f403d7b972e7e6a58e938ecb6c inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#a4adf02f403d7b972e7e6a58e938ecb6c">MetaInfoInterface</a> ()</td></tr>
<tr class="memdesc:a4adf02f403d7b972e7e6a58e938ecb6c inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">constructor <a href="#a4adf02f403d7b972e7e6a58e938ecb6c">More...</a><br/></td></tr>
<tr class="separator:a4adf02f403d7b972e7e6a58e938ecb6c inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae216eb0aa3192b67d70da8c461583256 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#ae216eb0aa3192b67d70da8c461583256">MetaInfoInterface</a> (const <a class="el" href="classOpenMS_1_1MetaInfoInterface.html">MetaInfoInterface</a> &rhs)</td></tr>
<tr class="memdesc:ae216eb0aa3192b67d70da8c461583256 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">copy constructor <a href="#ae216eb0aa3192b67d70da8c461583256">More...</a><br/></td></tr>
<tr class="separator:ae216eb0aa3192b67d70da8c461583256 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a30c6469ab28a1ae578b23109f8b931c6 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#a30c6469ab28a1ae578b23109f8b931c6">~MetaInfoInterface</a> ()</td></tr>
<tr class="memdesc:a30c6469ab28a1ae578b23109f8b931c6 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">destructor <a href="#a30c6469ab28a1ae578b23109f8b931c6">More...</a><br/></td></tr>
<tr class="separator:a30c6469ab28a1ae578b23109f8b931c6 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a0b7e858982ccb9d37b01971e6cd43596 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html">MetaInfoInterface</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#a0b7e858982ccb9d37b01971e6cd43596">operator=</a> (const <a class="el" href="classOpenMS_1_1MetaInfoInterface.html">MetaInfoInterface</a> &rhs)</td></tr>
<tr class="memdesc:a0b7e858982ccb9d37b01971e6cd43596 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">assignment operator <a href="#a0b7e858982ccb9d37b01971e6cd43596">More...</a><br/></td></tr>
<tr class="separator:a0b7e858982ccb9d37b01971e6cd43596 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae1233471a3265a00a5edef4017ee8f20 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#ae1233471a3265a00a5edef4017ee8f20">operator==</a> (const <a class="el" href="classOpenMS_1_1MetaInfoInterface.html">MetaInfoInterface</a> &rhs) const </td></tr>
<tr class="memdesc:ae1233471a3265a00a5edef4017ee8f20 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">Equality operator. <a href="#ae1233471a3265a00a5edef4017ee8f20">More...</a><br/></td></tr>
<tr class="separator:ae1233471a3265a00a5edef4017ee8f20 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aabdb6bf51d554dba98617e3f7609c6cf inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#aabdb6bf51d554dba98617e3f7609c6cf">operator!=</a> (const <a class="el" href="classOpenMS_1_1MetaInfoInterface.html">MetaInfoInterface</a> &rhs) const </td></tr>
<tr class="memdesc:aabdb6bf51d554dba98617e3f7609c6cf inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">Equality operator. <a href="#aabdb6bf51d554dba98617e3f7609c6cf">More...</a><br/></td></tr>
<tr class="separator:aabdb6bf51d554dba98617e3f7609c6cf inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aae35ae2dfad88d673b03c787aafca83d inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1DataValue.html">DataValue</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#aae35ae2dfad88d673b03c787aafca83d">getMetaValue</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &name) const </td></tr>
<tr class="memdesc:aae35ae2dfad88d673b03c787aafca83d inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">returns the value corresponding to a string <a href="#aae35ae2dfad88d673b03c787aafca83d">More...</a><br/></td></tr>
<tr class="separator:aae35ae2dfad88d673b03c787aafca83d inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae9b2516ea1331df63e4fc098c16b50e3 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1DataValue.html">DataValue</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#ae9b2516ea1331df63e4fc098c16b50e3">getMetaValue</a> (<a class="el" href="group__Concept.html#gaba0996d26f7be2572973245b51852757">UInt</a> index) const </td></tr>
<tr class="memdesc:ae9b2516ea1331df63e4fc098c16b50e3 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">returns the value corresponding to an index <a href="#ae9b2516ea1331df63e4fc098c16b50e3">More...</a><br/></td></tr>
<tr class="separator:ae9b2516ea1331df63e4fc098c16b50e3 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:acabf8a0e3c40224df62b282a5ce0318f inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#acabf8a0e3c40224df62b282a5ce0318f">metaValueExists</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &name) const </td></tr>
<tr class="memdesc:acabf8a0e3c40224df62b282a5ce0318f inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">returns if this <a class="el" href="classOpenMS_1_1MetaInfo.html" title="A Type-Name-Value tuple class. ">MetaInfo</a> is set <a href="#acabf8a0e3c40224df62b282a5ce0318f">More...</a><br/></td></tr>
<tr class="separator:acabf8a0e3c40224df62b282a5ce0318f inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aabf87daa46e081dd9584d4987d2206f6 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#aabf87daa46e081dd9584d4987d2206f6">metaValueExists</a> (<a class="el" href="group__Concept.html#gaba0996d26f7be2572973245b51852757">UInt</a> index) const </td></tr>
<tr class="memdesc:aabf87daa46e081dd9584d4987d2206f6 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">returns if this <a class="el" href="classOpenMS_1_1MetaInfo.html" title="A Type-Name-Value tuple class. ">MetaInfo</a> is set <a href="#aabf87daa46e081dd9584d4987d2206f6">More...</a><br/></td></tr>
<tr class="separator:aabf87daa46e081dd9584d4987d2206f6 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a135a7e818125b31198a8a65d9ac7a3d1 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#a135a7e818125b31198a8a65d9ac7a3d1">setMetaValue</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &name, const <a class="el" href="classOpenMS_1_1DataValue.html">DataValue</a> &value)</td></tr>
<tr class="memdesc:a135a7e818125b31198a8a65d9ac7a3d1 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">sets the <a class="el" href="classOpenMS_1_1DataValue.html" title="Class to hold strings, numeric values, lists of strings and lists of numeric values. ">DataValue</a> corresponding to a name <a href="#a135a7e818125b31198a8a65d9ac7a3d1">More...</a><br/></td></tr>
<tr class="separator:a135a7e818125b31198a8a65d9ac7a3d1 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:abbb9d3ebe8c7c3f6a9ed131faa8cf2c9 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#abbb9d3ebe8c7c3f6a9ed131faa8cf2c9">setMetaValue</a> (<a class="el" href="group__Concept.html#gaba0996d26f7be2572973245b51852757">UInt</a> index, const <a class="el" href="classOpenMS_1_1DataValue.html">DataValue</a> &value)</td></tr>
<tr class="memdesc:abbb9d3ebe8c7c3f6a9ed131faa8cf2c9 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">sets the <a class="el" href="classOpenMS_1_1DataValue.html" title="Class to hold strings, numeric values, lists of strings and lists of numeric values. ">DataValue</a> corresponding to an index <a href="#abbb9d3ebe8c7c3f6a9ed131faa8cf2c9">More...</a><br/></td></tr>
<tr class="separator:abbb9d3ebe8c7c3f6a9ed131faa8cf2c9 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aac68103b8336fa854cf4c59f8bd6cff8 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#aac68103b8336fa854cf4c59f8bd6cff8">removeMetaValue</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &name)</td></tr>
<tr class="memdesc:aac68103b8336fa854cf4c59f8bd6cff8 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">Removes the <a class="el" href="classOpenMS_1_1DataValue.html" title="Class to hold strings, numeric values, lists of strings and lists of numeric values. ">DataValue</a> corresponding to <code>name</code> if it exists. <a href="#aac68103b8336fa854cf4c59f8bd6cff8">More...</a><br/></td></tr>
<tr class="separator:aac68103b8336fa854cf4c59f8bd6cff8 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a3a8a7da0f5e71d3b96ea902c29bcf632 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#a3a8a7da0f5e71d3b96ea902c29bcf632">removeMetaValue</a> (<a class="el" href="group__Concept.html#gaba0996d26f7be2572973245b51852757">UInt</a> index)</td></tr>
<tr class="memdesc:a3a8a7da0f5e71d3b96ea902c29bcf632 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">Removes the <a class="el" href="classOpenMS_1_1DataValue.html" title="Class to hold strings, numeric values, lists of strings and lists of numeric values. ">DataValue</a> corresponding to <code>index</code> if it exists. <a href="#a3a8a7da0f5e71d3b96ea902c29bcf632">More...</a><br/></td></tr>
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<tr class="memitem:aaefa2a4a5d50f899cdd82d686104d164 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#aaefa2a4a5d50f899cdd82d686104d164">getKeys</a> (std::vector< <a class="el" href="classOpenMS_1_1String.html">String</a> > &keys) const </td></tr>
<tr class="memdesc:aaefa2a4a5d50f899cdd82d686104d164 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">fills the given vector with a list of all keys for which a value is set <a href="#aaefa2a4a5d50f899cdd82d686104d164">More...</a><br/></td></tr>
<tr class="separator:aaefa2a4a5d50f899cdd82d686104d164 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a121b22fe4dd05ef9fc4160bd52e9bd0b inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#a121b22fe4dd05ef9fc4160bd52e9bd0b">getKeys</a> (std::vector< <a class="el" href="group__Concept.html#gaba0996d26f7be2572973245b51852757">UInt</a> > &keys) const </td></tr>
<tr class="memdesc:a121b22fe4dd05ef9fc4160bd52e9bd0b inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">fills the given vector with a list of all keys for which a value is set <a href="#a121b22fe4dd05ef9fc4160bd52e9bd0b">More...</a><br/></td></tr>
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<tr class="memitem:a001483d1f67f068e585f10d9abcc487d inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#a001483d1f67f068e585f10d9abcc487d">isMetaEmpty</a> () const </td></tr>
<tr class="memdesc:a001483d1f67f068e585f10d9abcc487d inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">returns if the <a class="el" href="classOpenMS_1_1MetaInfo.html" title="A Type-Name-Value tuple class. ">MetaInfo</a> is empty <a href="#a001483d1f67f068e585f10d9abcc487d">More...</a><br/></td></tr>
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<tr class="memitem:ae5b77ecfe9182ebd648d54ca1137eba0 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#ae5b77ecfe9182ebd648d54ca1137eba0">clearMetaInfo</a> ()</td></tr>
<tr class="memdesc:ae5b77ecfe9182ebd648d54ca1137eba0 inherit pub_methods_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">removes all meta values <a href="#ae5b77ecfe9182ebd648d54ca1137eba0">More...</a><br/></td></tr>
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Protected Attributes</h2></td></tr>
<tr class="memitem:ae1d43a6f8bee9f364bea98c12662e966"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeptideIdentification.html#ae1d43a6f8bee9f364bea98c12662e966">id_</a></td></tr>
<tr class="memdesc:ae1d43a6f8bee9f364bea98c12662e966"><td class="mdescLeft"> </td><td class="mdescRight">Identifier by which <a class="el" href="classOpenMS_1_1ProteinIdentification.html" title="Representation of a protein identification run. ">ProteinIdentification</a> and <a class="el" href="classOpenMS_1_1PeptideIdentification.html" title="Represents the peptide hits for a spectrum. ">PeptideIdentification</a> are matched. <a href="#ae1d43a6f8bee9f364bea98c12662e966">More...</a><br/></td></tr>
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<tr class="memitem:a79d4455f471fcdd3e195cf29f2fdb36f"><td class="memItemLeft" align="right" valign="top">std::vector< <a class="el" href="classOpenMS_1_1PeptideHit.html">PeptideHit</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeptideIdentification.html#a79d4455f471fcdd3e195cf29f2fdb36f">hits_</a></td></tr>
<tr class="memdesc:a79d4455f471fcdd3e195cf29f2fdb36f"><td class="mdescLeft"> </td><td class="mdescRight">A list containing the peptide hits. <a href="#a79d4455f471fcdd3e195cf29f2fdb36f">More...</a><br/></td></tr>
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<tr class="memitem:abc04134b209607b000cf0981101fb72c"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeptideIdentification.html#abc04134b209607b000cf0981101fb72c">significance_threshold_</a></td></tr>
<tr class="memdesc:abc04134b209607b000cf0981101fb72c"><td class="mdescLeft"> </td><td class="mdescRight">the peptide significance threshold <a href="#abc04134b209607b000cf0981101fb72c">More...</a><br/></td></tr>
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<tr class="memitem:a53c5ab78a58e8242d9007d2319a5ad3e"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeptideIdentification.html#a53c5ab78a58e8242d9007d2319a5ad3e">score_type_</a></td></tr>
<tr class="memdesc:a53c5ab78a58e8242d9007d2319a5ad3e"><td class="mdescLeft"> </td><td class="mdescRight">The score type (Mascot, Sequest, e-value, p-value) <a href="#a53c5ab78a58e8242d9007d2319a5ad3e">More...</a><br/></td></tr>
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<tr class="memitem:a9e5d348a14e5fe639d88db39f0ff7ada"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeptideIdentification.html#a9e5d348a14e5fe639d88db39f0ff7ada">higher_score_better_</a></td></tr>
<tr class="memdesc:a9e5d348a14e5fe639d88db39f0ff7ada"><td class="mdescLeft"> </td><td class="mdescRight">The score orientation. <a href="#a9e5d348a14e5fe639d88db39f0ff7ada">More...</a><br/></td></tr>
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<tr class="inherit_header pro_attribs_classOpenMS_1_1MetaInfoInterface"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classOpenMS_1_1MetaInfoInterface')"><img src="closed.png" alt="-"/> Protected Attributes inherited from <a class="el" href="classOpenMS_1_1MetaInfoInterface.html">MetaInfoInterface</a></td></tr>
<tr class="memitem:a07ce72f4d24f650fcdbba3801e1b8f59 inherit pro_attribs_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1MetaInfo.html">MetaInfo</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#a07ce72f4d24f650fcdbba3801e1b8f59">meta_</a></td></tr>
<tr class="memdesc:a07ce72f4d24f650fcdbba3801e1b8f59 inherit pro_attribs_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">pointer to the <a class="el" href="classOpenMS_1_1MetaInfo.html" title="A Type-Name-Value tuple class. ">MetaInfo</a> object. 0 by default <a href="#a07ce72f4d24f650fcdbba3801e1b8f59">More...</a><br/></td></tr>
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Additional Inherited Members</h2></td></tr>
<tr class="inherit_header pub_static_methods_classOpenMS_1_1MetaInfoInterface"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classOpenMS_1_1MetaInfoInterface')"><img src="closed.png" alt="-"/> Static Public Member Functions inherited from <a class="el" href="classOpenMS_1_1MetaInfoInterface.html">MetaInfoInterface</a></td></tr>
<tr class="memitem:adc0992991f912788ed14e72b6f62b2dd inherit pub_static_methods_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top">static <a class="el" href="classOpenMS_1_1MetaInfoRegistry.html">MetaInfoRegistry</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#adc0992991f912788ed14e72b6f62b2dd">metaRegistry</a> ()</td></tr>
<tr class="memdesc:adc0992991f912788ed14e72b6f62b2dd inherit pub_static_methods_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">retuns a reference to the <a class="el" href="classOpenMS_1_1MetaInfoRegistry.html" title="Registry which assigns unique integer indices to strings. ">MetaInfoRegistry</a> <a href="#adc0992991f912788ed14e72b6f62b2dd">More...</a><br/></td></tr>
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<tr class="inherit_header pro_methods_classOpenMS_1_1MetaInfoInterface"><td colspan="2" onclick="javascript:toggleInherit('pro_methods_classOpenMS_1_1MetaInfoInterface')"><img src="closed.png" alt="-"/> Protected Member Functions inherited from <a class="el" href="classOpenMS_1_1MetaInfoInterface.html">MetaInfoInterface</a></td></tr>
<tr class="memitem:a23bcf7d2c2357d11e1363dfe44057037 inherit pro_methods_classOpenMS_1_1MetaInfoInterface"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html#a23bcf7d2c2357d11e1363dfe44057037">createIfNotExists_</a> ()</td></tr>
<tr class="memdesc:a23bcf7d2c2357d11e1363dfe44057037 inherit pro_methods_classOpenMS_1_1MetaInfoInterface"><td class="mdescLeft"> </td><td class="mdescRight">creates the <a class="el" href="classOpenMS_1_1MetaInfo.html" title="A Type-Name-Value tuple class. ">MetaInfo</a> object if it does not exist <a href="#a23bcf7d2c2357d11e1363dfe44057037">More...</a><br/></td></tr>
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>Represents the peptide hits for a spectrum. </p>
<p>This class is closely related to <a class="el" href="classOpenMS_1_1ProteinIdentification.html" title="Representation of a protein identification run. ">ProteinIdentification</a>, which stores the protein hits and the general information about the identification run. More than one <a class="el" href="classOpenMS_1_1PeptideIdentification.html" title="Represents the peptide hits for a spectrum. ">PeptideIdentification</a> can belong to one <a class="el" href="classOpenMS_1_1ProteinIdentification.html" title="Representation of a protein identification run. ">ProteinIdentification</a>. The general information about a <a class="el" href="classOpenMS_1_1PeptideIdentification.html" title="Represents the peptide hits for a spectrum. ">PeptideIdentification</a> has to be looked up in the correpsonding ProteinIndentification, using the unique <em>identifier</em> that links the two.</p>
<p>When loading <a class="el" href="classOpenMS_1_1PeptideHit.html" title="Representation of a peptide hit. ">PeptideHit</a> instances from a <a class="el" href="classOpenMS_1_1File.html" title="Basic file handling operations. ">File</a>, the retention time and mass-to-charge ratio of the precursor spectrum is stored in the <a class="el" href="classOpenMS_1_1MetaInfoInterface.html" title="Interface for classes that can store arbitrary meta information (Type-Name-Value tuples). ">MetaInfoInterface</a> using the names 'MZ' and 'RT'. This information can be used to map the peptide hits to an <a class="el" href="classOpenMS_1_1MSExperiment.html" title="Representation of a mass spectrometry experiment. ">MSExperiment</a>, a <a class="el" href="classOpenMS_1_1FeatureMap.html" title="A container for features. ">FeatureMap</a> or a <a class="el" href="classOpenMS_1_1ConsensusMap.html" title="A container for consensus elements. ">ConsensusMap</a> using the <a class="el" href="classOpenMS_1_1IDMapper.html" title="Annotates an MSExperiment, FeatureMap or ConsensusMap with peptide identifications. ">IDMapper</a> class. </p>
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<td class="memname">typedef <a class="el" href="classOpenMS_1_1PeptideHit.html">PeptideHit</a> <a class="el" href="classOpenMS_1_1PeptideIdentification.html#a274bec67c485db1aae67a8d12d2ca296">HitType</a></td>
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<p>Hit type definition. </p>
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<h2 class="groupheader">Constructor & Destructor Documentation</h2>
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<td class="memname"><a class="el" href="classOpenMS_1_1PeptideIdentification.html">PeptideIdentification</a> </td>
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<p>default constructor </p>
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<p>destructor </p>
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<p>copy constructor </p>
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<h2 class="groupheader">Member Function Documentation</h2>
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<td class="memname">void assignRanks </td>
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<p>Sorts the hits by score and assigns ranks coording to the scores. </p>
<p>Referenced by <a class="el" href="classTOPPRNPxl.html#ae6668492d67ea303296f9db6ac56325c">TOPPRNPxl::main_()</a>.</p>
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<p>Returns if this <a class="el" href="classOpenMS_1_1PeptideIdentification.html" title="Represents the peptide hits for a spectrum. ">PeptideIdentification</a> result is empty. </p>
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<td class="memname">const std::vector<<a class="el" href="classOpenMS_1_1PeptideHit.html">PeptideHit</a>>& getHits </td>
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<p>returns the peptide hits </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1IDFilter.html#adbddef78d7fcfbd5a87e19762fd1cc7b">IDFilter::filterIdentificationsByBestNHits()</a>, <a class="el" href="classOpenMS_1_1IDFilter.html#a4abee7e9d0f79197ddf80a6af8632d03">IDFilter::filterIdentificationsByProteins()</a>, <a class="el" href="classOpenMS_1_1IDFilter.html#aeb523c70d4d0f6e8cabd7b8db02cf638">IDFilter::filterIdentificationsByScores()</a>, <a class="el" href="classOpenMS_1_1IDFilter.html#a5317f48e0a2b44028ade11faa175dc12">IDFilter::filterIdentificationsByThresholds()</a>, and <a class="el" href="classTOPPRNPxl.html#ae6668492d67ea303296f9db6ac56325c">TOPPRNPxl::main_()</a>.</p>
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<p>returns the identifier </p>
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<p>the complement of the above </p>
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<td class="memname">void getNonReferencingHits </td>
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<td class="paramtype">const std::vector< <a class="el" href="classOpenMS_1_1ProteinHit.html">ProteinHit</a> > & </td>
<td class="paramname"><em>protein_hits</em>, </td>
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<td class="paramname"><em>peptide_hits</em> </td>
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<td class="memname">void getReferencingHits </td>
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<td class="paramtype">const <a class="el" href="classOpenMS_1_1String.html">String</a> & </td>
<td class="paramname"><em>protein_accession</em>, </td>
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<td class="paramtype">std::vector< <a class="el" href="classOpenMS_1_1PeptideHit.html">PeptideHit</a> > & </td>
<td class="paramname"><em>peptide_hits</em> </td>
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<p>finds and inserts all peptide hits which reference to a given protein accession </p>
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<td class="memname">void getReferencingHits </td>
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<td class="paramtype">const std::vector< <a class="el" href="classOpenMS_1_1String.html">String</a> > & </td>
<td class="paramname"><em>accessions</em>, </td>
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<p>finds and inserts all peptide hits which reference to a given list of protein accessions </p>
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<td class="memname">void getReferencingHits </td>
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<td class="paramtype">const std::vector< <a class="el" href="classOpenMS_1_1ProteinHit.html">ProteinHit</a> > & </td>
<td class="paramname"><em>protein_hits</em>, </td>
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<p>finds and inserts all peptide hits which reference to a given list of proteins (via their accessions) </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1String.html">String</a> getScoreType </td>
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<p>returns the peptide score type </p>
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<td class="memname"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> getSignificanceThreshold </td>
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<p>returns the peptide significance threshold value </p>
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<td class="memname">void insertHit </td>
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<td class="paramname"><em>hit</em></td><td>)</td>
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<p>Appends a peptide hit. </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1MRMFeatureFinderScoring.html#a1d7f11c2be93f8140f508487ba0ae718">MRMFeatureFinderScoring::scorePeakgroups_()</a>.</p>
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<td class="memname">bool isHigherScoreBetter </td>
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<p>returns the peptide score orientation </p>
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<td class="memname">bool operator!= </td>
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<td class="paramtype">const <a class="el" href="classOpenMS_1_1PeptideIdentification.html">PeptideIdentification</a> & </td>
<td class="paramname"><em>rhs</em></td><td>)</td>
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<p>Inequality operator. </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1PeptideIdentification.html">PeptideIdentification</a>& operator= </td>
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<td class="paramname"><em>source</em></td><td>)</td>
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<p>assignment operator </p>
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<td class="memname">bool operator== </td>
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<td class="paramname"><em>rhs</em></td><td>)</td>
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<p>Equality operator. </p>
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<td class="memname">void setHigherScoreBetter </td>
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<p>sets the peptide score orientation </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1DBAdapter.html#ad4d077939d4a1b5a633d79c138e364df">DBAdapter::loadSpectrum()</a>, and <a class="el" href="classTOPPRNPxl.html#ae6668492d67ea303296f9db6ac56325c">TOPPRNPxl::main_()</a>.</p>
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<td class="paramname"><em>hits</em></td><td>)</td>
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<p>Sets the peptide hits. </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1DBAdapter.html#ad4d077939d4a1b5a633d79c138e364df">DBAdapter::loadSpectrum()</a>, and <a class="el" href="classTOPPRNPxl.html#ae6668492d67ea303296f9db6ac56325c">TOPPRNPxl::main_()</a>.</p>
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<td class="memname">void setIdentifier </td>
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<td class="paramname"><em>id</em></td><td>)</td>
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<p>sets the indentifier </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1MRMFeatureFinderScoring.html#a1d7f11c2be93f8140f508487ba0ae718">MRMFeatureFinderScoring::scorePeakgroups_()</a>.</p>
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<td class="memname">void setScoreType </td>
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<td class="paramtype">const <a class="el" href="classOpenMS_1_1String.html">String</a> & </td>
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<p>sets the peptide score type </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1DBAdapter.html#ad4d077939d4a1b5a633d79c138e364df">DBAdapter::loadSpectrum()</a>.</p>
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<td class="memname">void setSignificanceThreshold </td>
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<td class="paramtype"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> </td>
<td class="paramname"><em>value</em></td><td>)</td>
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<p>setting of the peptide significance threshold value </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1DBAdapter.html#ad4d077939d4a1b5a633d79c138e364df">DBAdapter::loadSpectrum()</a>.</p>
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<td class="memname">void sort </td>
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<p>Sorts the hits by score. </p>
<p>Sorting takes the score orientation (<code>higher_score_better_</code>) into account, i.e. after sorting, the best-scoring hit is the first. </p>
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<h2 class="groupheader">Member Data Documentation</h2>
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<td class="memname">bool higher_score_better_</td>
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<p>The score orientation. </p>
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<td class="memname">std::vector<<a class="el" href="classOpenMS_1_1PeptideHit.html">PeptideHit</a>> hits_</td>
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<p>A list containing the peptide hits. </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1String.html">String</a> id_</td>
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<p>Identifier by which <a class="el" href="classOpenMS_1_1ProteinIdentification.html" title="Representation of a protein identification run. ">ProteinIdentification</a> and <a class="el" href="classOpenMS_1_1PeptideIdentification.html" title="Represents the peptide hits for a spectrum. ">PeptideIdentification</a> are matched. </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1String.html">String</a> score_type_</td>
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<p>The score type (Mascot, Sequest, e-value, p-value) </p>
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<td class="memname"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> significance_threshold_</td>
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<p>the peptide significance threshold </p>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:33 using doxygen 1.8.5</font></TD>
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