File: classOpenMS_1_1ProteinResolver-members.html

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<li class="navelem"><a class="el" href="namespaceOpenMS.html">OpenMS</a></li><li class="navelem"><a class="el" href="classOpenMS_1_1ProteinResolver.html">ProteinResolver</a></li>  </ul>
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<div class="title">ProteinResolver Member List</div>  </div>
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<p>This is the complete list of members for <a class="el" href="classOpenMS_1_1ProteinResolver.html">ProteinResolver</a>, including all inherited members.</p>
<table class="directory">
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html#ac4eae9cac8f5f8aa33ffc07d15795581">binarySearchNodes_</a>(String &amp;seq, std::vector&lt; PeptideEntry &gt; &amp;nodes, Size start, Size end)</td><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html">ProteinResolver</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html#a4d1240960d9281e740808907bb011e96">buildingISDGroups_</a>(std::vector&lt; ProteinEntry &gt; &amp;protein_nodes, std::vector&lt; PeptideEntry &gt; &amp;peptide_nodes, std::vector&lt; ISDGroup &gt; &amp;isd_groups)</td><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html">ProteinResolver</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html#aa77abb84b93f44633066e786c6176342">buildingMSDGroups_</a>(std::vector&lt; MSDGroup &gt; &amp;msd_groups, std::vector&lt; ISDGroup &gt; &amp;isd_groups)</td><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html">ProteinResolver</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a7c3b265b697a57615da5cd3274780efd">check_defaults_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html#a2c5158e98b848aa78b228bd71168f7bf">clearResult</a>()</td><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html">ProteinResolver</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html#af715fc84a8f108dfdcf83d6c9dc22ec9">computeIntensityOfMSD_</a>(std::vector&lt; MSDGroup &gt; &amp;msd_groups)</td><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html">ProteinResolver</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html#ab67adca0248e37127c96309fc6d6fb12">countTargetDecoy</a>(std::vector&lt; MSDGroup &gt; &amp;msd_groups, ConsensusMap &amp;consensus)</td><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html">ProteinResolver</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html#a51a88df551b3964101c37cd47f935958">countTargetDecoy</a>(std::vector&lt; MSDGroup &gt; &amp;msd_groups, std::vector&lt; PeptideIdentification &gt; &amp;peptide_nodes)</td><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html">ProteinResolver</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#afb6802fda161cb0c1a4a05597f94aecc">DefaultParamHandler</a>(const String &amp;name)</td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a954da7eef3cfddda446574eaadd20abb">DefaultParamHandler</a>(const DefaultParamHandler &amp;rhs)</td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a761b1937850c141d0c6fff0e4d633a04">defaults_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a2802c591e6d7fd3fd9cc35f5e875d0ba">defaultsToParam_</a>()</td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a5a51f3f150b09068256195e934339a19">error_name_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html#ab666aa8cb352c70365a9399552545dfe">findPeptideEntry_</a>(String seq, std::vector&lt; PeptideEntry &gt; &amp;nodes)</td><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html">ProteinResolver</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a02f02fa9832ca3e8d47c575a39803a2a">getDefaults</a>() const </td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#aaee0f2845288173de9f6ad47e6ad31d5">getName</a>() const </td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a7f6aab5a7dfbdd1c062a4352a29361f3">getParameters</a>() const </td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html#adbd2d22e8e85c441100286dce58b7b1b">getPeptideHit</a>(const ConsensusMap &amp;consensus, const PeptideEntry *peptide)</td><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html">ProteinResolver</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html#a16647b5c821c6065cdd105bc91aafd08">getPeptideHit</a>(const std::vector&lt; PeptideIdentification &gt; &amp;peptide_nodes, const PeptideEntry *peptide)</td><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html">ProteinResolver</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html#aaf4d712f7903f900f416e8ff9be42cf8">getPeptideIdentification</a>(const ConsensusMap &amp;consensus, const PeptideEntry *peptide)</td><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html">ProteinResolver</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html#a86baa831d7286c4db0c0434544102e24">getPeptideIdentification</a>(const std::vector&lt; PeptideIdentification &gt; &amp;peptide_nodes, const PeptideEntry *peptide)</td><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html">ProteinResolver</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html#a9093f6da9fa450e42e9d703f28686f62">getResults</a>()</td><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html">ProteinResolver</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a768d4a2093627a2f34728656a9721bdf">getSubsections</a>() const </td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html#a747454c311bd788151b616a24c83bf89">includeMSMSPeptides_</a>(std::vector&lt; PeptideIdentification &gt; &amp;peptide_identifications, std::vector&lt; PeptideEntry &gt; &amp;peptide_nodes)</td><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html">ProteinResolver</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html#a9741d3ee68a4bdb9f74a60ccc05b1042">includeMSMSPeptides_</a>(ConsensusMap &amp;consensus, std::vector&lt; PeptideEntry &gt; &amp;peptide_nodes)</td><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html">ProteinResolver</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html#af44f503cc24c98384bda22860e0dc647">operator=</a>(const ProteinResolver &amp;rhs)</td><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html">ProteinResolver</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ae6b6d68036a573a44f6609460ba2dfb6">OpenMS::DefaultParamHandler::operator=</a>(const DefaultParamHandler &amp;rhs)</td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ac435f2dd4d9f9328db83af97129a8d7e">operator==</a>(const DefaultParamHandler &amp;rhs) const </td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a28c73e623c63a4fe3bfceb1ae8274f39">param_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html#a8220c410ff2ecf53cc3332f181dc9937">primaryProteins_</a>(std::vector&lt; PeptideEntry &gt; &amp;peptide_nodes, std::vector&lt; Size &gt; &amp;reindexed_peptides)</td><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html">ProteinResolver</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html#adbb6932604b6b4a6f5dc6526cc2c9048">protein_data_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html">ProteinResolver</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html#ad275cf3cc1a58934bdf310c23f4dada8">ProteinResolver</a>()</td><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html">ProteinResolver</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html#aad8a670f6f54f779d04a1f3aadf38d88">ProteinResolver</a>(const ProteinResolver &amp;rhs)</td><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html">ProteinResolver</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html#add53f3c1c6831d16331d2b7b413c59a9">reindexingNodes_</a>(std::vector&lt; MSDGroup &gt; &amp;msd_groups, std::vector&lt; Size &gt; &amp;reindexed_proteins, std::vector&lt; Size &gt; &amp;reindexed_peptides)</td><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html">ProteinResolver</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html#a658e675d8755bcb1a7d8fc0d3bd17053">resolveConsensus</a>(ConsensusMap &amp;consensus)</td><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html">ProteinResolver</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html#a3a001c805248605a0812c7b8511a4a2e">resolveID</a>(std::vector&lt; PeptideIdentification &gt; &amp;peptide_identifications)</td><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html">ProteinResolver</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html#a4c49b96ec457ee2202e74f5ada1e40ff">resolver_result_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html">ProteinResolver</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a77d37f2e1c12e8bd33ea0e660a89e927">setName</a>(const String &amp;name)</td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#abc8067511cfc949ae942ea2b08588f81">setParameters</a>(const Param &amp;param)</td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html#ac6f8b6589ab42c93b042408740dd1c14">setProteinData</a>(std::vector&lt; FASTAFile::FASTAEntry &gt; &amp;protein_data)</td><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html">ProteinResolver</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ac4b0e20bc59c7a5afe016c69067e428c">subsections_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html#a472d17d35d22e1586b78cd5c83f4a29d">traversPeptide_</a>(PeptideEntry *pep_node, ISDGroup &amp;group)</td><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html">ProteinResolver</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html#a5091d31f4aa5bd4ade8d331561d28c6c">traversPeptide_</a>(PeptideEntry *pep_node, MSDGroup &amp;group)</td><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html">ProteinResolver</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html#afa0a91e61a7669a40c5ea4a0ec453531">traversProtein_</a>(ProteinEntry *prot_node, ISDGroup &amp;group)</td><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html">ProteinResolver</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html#aa71757b8d35bb32d527f3ad93c7df491">traversProtein_</a>(ProteinEntry *prot_node, MSDGroup &amp;group)</td><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html">ProteinResolver</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a776f7572fc4f466e9527ca233471920d">updateMembers_</a>()</td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"><span class="mlabel">protected</span><span class="mlabel">virtual</span></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#aba444910e4fccb93f91bf7ab135f508a">warn_empty_defaults_</a></td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a11e9d6dd34fe8860874aa8abe0ec121b">~DefaultParamHandler</a>()</td><td class="entry"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html#a33d6e3f2b48423cd7ff0e7ae548d2055">~ProteinResolver</a>()</td><td class="entry"><a class="el" href="classOpenMS_1_1ProteinResolver.html">ProteinResolver</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:27 using doxygen 1.8.5</font></TD>
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