File: classOpenMS_1_1SILACPoint.html

package info (click to toggle)
openms 1.11.1-5
  • links: PTS, VCS
  • area: main
  • in suites: jessie, jessie-kfreebsd
  • size: 436,688 kB
  • ctags: 150,907
  • sloc: cpp: 387,126; xml: 71,547; python: 7,764; ansic: 2,626; php: 2,499; sql: 737; ruby: 342; sh: 325; makefile: 128
file content (229 lines) | stat: -rw-r--r-- 13,130 bytes parent folder | download 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
 
<HTML>
<HEAD>
<TITLE>SILACPoint Class Reference</TITLE>
<LINK HREF="doxygen.css" REL="stylesheet" TYPE="text/css">
<LINK HREF="style_ini.css" REL="stylesheet" TYPE="text/css">
</HEAD>
<BODY BGCOLOR="#FFFFFF">
<A href="index.html">Home</A> &nbsp;&middot;
<A href="classes.html">Classes</A> &nbsp;&middot;
<A href="annotated.html">Annotated Classes</A> &nbsp;&middot;
<A href="modules.html">Modules</A> &nbsp;&middot;
<A href="functions_func.html">Members</A> &nbsp;&middot;
<A href="namespaces.html">Namespaces</A> &nbsp;&middot;
<A href="pages.html">Related Pages</A>
<HR style="height:1px; border:none; border-top:1px solid #c0c0c0;">
<!-- Generated by Doxygen 1.8.5 -->
<div id="nav-path" class="navpath">
  <ul>
<li class="navelem"><a class="el" href="namespaceOpenMS.html">OpenMS</a></li><li class="navelem"><a class="el" href="classOpenMS_1_1SILACPoint.html">SILACPoint</a></li>  </ul>
</div>
</div><!-- top -->
<div class="header">
  <div class="summary">
<a href="#pub-methods">Public Member Functions</a> &#124;
<a href="#pub-attribs">Public Attributes</a> &#124;
<a href="classOpenMS_1_1SILACPoint-members.html">List of all members</a>  </div>
  <div class="headertitle">
<div class="title">SILACPoint Class Reference<div class="ingroups"><a class="el" href="group__Datastructures.html">Datastructures</a></div></div>  </div>
</div><!--header-->
<div class="contents">

<p>A single SILAC point.  
 <a href="classOpenMS_1_1SILACPoint.html#details">More...</a></p>

<p><code>#include &lt;<a class="el" href="SILACPoint_8h_source.html">OpenMS/FILTERING/DATAREDUCTION/SILACPoint.h</a>&gt;</code></p>
<div class="dynheader">
Inheritance diagram for SILACPoint:</div>
<div class="dyncontent">
 <div class="center">
  <img src="classOpenMS_1_1SILACPoint.png" usemap="#SILACPoint_map" alt=""/>
  <map id="SILACPoint_map" name="SILACPoint_map">
<area href="classOpenMS_1_1SILACPattern.html" title="A single SILAC pattern containing multiple found points. " alt="SILACPattern" shape="rect" coords="0,56,88,80"/>
</map>
 </div></div>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:a07b8ef7af11b8b1820016d0a3d5ee082"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SILACPoint.html#a07b8ef7af11b8b1820016d0a3d5ee082">SILACPoint</a> ()</td></tr>
<tr class="separator:a07b8ef7af11b8b1820016d0a3d5ee082"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-attribs"></a>
Public Attributes</h2></td></tr>
<tr class="memitem:ae7800b5f37aa029e53c6776f1952cdc7"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SILACPoint.html#ae7800b5f37aa029e53c6776f1952cdc7">mz</a></td></tr>
<tr class="memdesc:ae7800b5f37aa029e53c6776f1952cdc7"><td class="mdescLeft">&#160;</td><td class="mdescRight">m/z value of the element  <a href="#ae7800b5f37aa029e53c6776f1952cdc7">More...</a><br/></td></tr>
<tr class="separator:ae7800b5f37aa029e53c6776f1952cdc7"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a365131e721e286ddc62d0e6e60f382a1"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SILACPoint.html#a365131e721e286ddc62d0e6e60f382a1">rt</a></td></tr>
<tr class="memdesc:a365131e721e286ddc62d0e6e60f382a1"><td class="mdescLeft">&#160;</td><td class="mdescRight">RT value of the element.  <a href="#a365131e721e286ddc62d0e6e60f382a1">More...</a><br/></td></tr>
<tr class="separator:a365131e721e286ddc62d0e6e60f382a1"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aa5070185cf9b35225189831304b34d5f"><td class="memItemLeft" align="right" valign="top">std::vector&lt; std::vector<br class="typebreak"/>
&lt; <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SILACPoint.html#aa5070185cf9b35225189831304b34d5f">mz_positions</a></td></tr>
<tr class="memdesc:aa5070185cf9b35225189831304b34d5f"><td class="mdescLeft">&#160;</td><td class="mdescRight">exact m/z positions at which the intensities are read  <a href="#aa5070185cf9b35225189831304b34d5f">More...</a><br/></td></tr>
<tr class="separator:aa5070185cf9b35225189831304b34d5f"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ad9941b2a7d3a7ff8d403dd120af0bf1a"><td class="memItemLeft" align="right" valign="top">std::vector&lt; std::vector<br class="typebreak"/>
&lt; <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SILACPoint.html#ad9941b2a7d3a7ff8d403dd120af0bf1a">intensities</a></td></tr>
<tr class="memdesc:ad9941b2a7d3a7ff8d403dd120af0bf1a"><td class="mdescLeft">&#160;</td><td class="mdescRight">intensities at RT and the exact m/z positions  <a href="#ad9941b2a7d3a7ff8d403dd120af0bf1a">More...</a><br/></td></tr>
<tr class="separator:ad9941b2a7d3a7ff8d403dd120af0bf1a"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a2eb48e2c87977046e87ed094dd6e420f"><td class="memItemLeft" align="right" valign="top">std::vector&lt; <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SILACPoint.html#a2eb48e2c87977046e87ed094dd6e420f">mass_shifts</a></td></tr>
<tr class="memdesc:a2eb48e2c87977046e87ed094dd6e420f"><td class="mdescLeft">&#160;</td><td class="mdescRight">mass shifts [Da] used in the filter  <a href="#a2eb48e2c87977046e87ed094dd6e420f">More...</a><br/></td></tr>
<tr class="separator:a2eb48e2c87977046e87ed094dd6e420f"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a8253a7962ca1c79b71e6af96589b7720"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SILACPoint.html#a8253a7962ca1c79b71e6af96589b7720">charge</a></td></tr>
<tr class="memdesc:a8253a7962ca1c79b71e6af96589b7720"><td class="mdescLeft">&#160;</td><td class="mdescRight">charge of the cluster (i.e. peptide) which the data point is part of  <a href="#a8253a7962ca1c79b71e6af96589b7720">More...</a><br/></td></tr>
<tr class="separator:a8253a7962ca1c79b71e6af96589b7720"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:abe1ef740eeefa8343dca3b193fd14230"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SILACPoint.html#abe1ef740eeefa8343dca3b193fd14230">isotopes_per_peptide</a></td></tr>
<tr class="memdesc:abe1ef740eeefa8343dca3b193fd14230"><td class="mdescLeft">&#160;</td><td class="mdescRight">number of isotopes per peptide of the cluster  <a href="#abe1ef740eeefa8343dca3b193fd14230">More...</a><br/></td></tr>
<tr class="separator:abe1ef740eeefa8343dca3b193fd14230"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:af71dba097557f9f7c9b608b321972771"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SILACPoint.html#af71dba097557f9f7c9b608b321972771">quality</a></td></tr>
<tr class="memdesc:af71dba097557f9f7c9b608b321972771"><td class="mdescLeft">&#160;</td><td class="mdescRight">quality of the cluster  <a href="#af71dba097557f9f7c9b608b321972771">More...</a><br/></td></tr>
<tr class="separator:af71dba097557f9f7c9b608b321972771"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table>
<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>A single SILAC point. </p>
<dl class="section see"><dt>See Also</dt><dd><a class="el" href="classOpenMS_1_1HashGrid.html" title="Container for (2-dimensional coordinate, value) pairs. ">HashGrid</a> </dd></dl>
</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
<a class="anchor" id="a07b8ef7af11b8b1820016d0a3d5ee082"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
  <tr>
  <td class="mlabels-left">
      <table class="memname">
        <tr>
          <td class="memname"><a class="el" href="classOpenMS_1_1SILACPoint.html">SILACPoint</a> </td>
          <td>(</td>
          <td class="paramname"></td><td>)</td>
          <td></td>
        </tr>
      </table>
  </td>
  <td class="mlabels-right">
<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
  </tr>
</table>
</div><div class="memdoc">

</div>
</div>
<h2 class="groupheader">Member Data Documentation</h2>
<a class="anchor" id="a8253a7962ca1c79b71e6af96589b7720"></a>
<div class="memitem">
<div class="memproto">
      <table class="memname">
        <tr>
          <td class="memname"><a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> charge</td>
        </tr>
      </table>
</div><div class="memdoc">

<p>charge of the cluster (i.e. peptide) which the data point is part of </p>

</div>
</div>
<a class="anchor" id="ad9941b2a7d3a7ff8d403dd120af0bf1a"></a>
<div class="memitem">
<div class="memproto">
      <table class="memname">
        <tr>
          <td class="memname">std::vector&lt;std::vector&lt;<a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a>&gt; &gt; intensities</td>
        </tr>
      </table>
</div><div class="memdoc">

<p>intensities at RT and the exact m/z positions </p>

</div>
</div>
<a class="anchor" id="abe1ef740eeefa8343dca3b193fd14230"></a>
<div class="memitem">
<div class="memproto">
      <table class="memname">
        <tr>
          <td class="memname"><a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> isotopes_per_peptide</td>
        </tr>
      </table>
</div><div class="memdoc">

<p>number of isotopes per peptide of the cluster </p>

</div>
</div>
<a class="anchor" id="a2eb48e2c87977046e87ed094dd6e420f"></a>
<div class="memitem">
<div class="memproto">
      <table class="memname">
        <tr>
          <td class="memname">std::vector&lt;<a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a>&gt; mass_shifts</td>
        </tr>
      </table>
</div><div class="memdoc">

<p>mass shifts [Da] used in the filter </p>

</div>
</div>
<a class="anchor" id="ae7800b5f37aa029e53c6776f1952cdc7"></a>
<div class="memitem">
<div class="memproto">
      <table class="memname">
        <tr>
          <td class="memname"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> mz</td>
        </tr>
      </table>
</div><div class="memdoc">

<p>m/z value of the element </p>

</div>
</div>
<a class="anchor" id="aa5070185cf9b35225189831304b34d5f"></a>
<div class="memitem">
<div class="memproto">
      <table class="memname">
        <tr>
          <td class="memname">std::vector&lt;std::vector&lt;<a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a>&gt; &gt; mz_positions</td>
        </tr>
      </table>
</div><div class="memdoc">

<p>exact m/z positions at which the intensities are read </p>

</div>
</div>
<a class="anchor" id="af71dba097557f9f7c9b608b321972771"></a>
<div class="memitem">
<div class="memproto">
      <table class="memname">
        <tr>
          <td class="memname"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> quality</td>
        </tr>
      </table>
</div><div class="memdoc">

<p>quality of the cluster </p>

</div>
</div>
<a class="anchor" id="a365131e721e286ddc62d0e6e60f382a1"></a>
<div class="memitem">
<div class="memproto">
      <table class="memname">
        <tr>
          <td class="memname"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> rt</td>
        </tr>
      </table>
</div><div class="memdoc">

<p>RT value of the element. </p>

</div>
</div>
</div><!-- contents -->
<HR style="height:1px; border:none; border-top:1px solid #c0c0c0;">
<TABLE width="100%" border="0">
<TR>
<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:30 using doxygen 1.8.5</font></TD>
</TR>
</TABLE>
</BODY>
</HTML>