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<HTML>
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<TITLE>SimpleExtender< PeakType, FeatureType > Class Template Reference</TITLE>
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<li class="navelem"><a class="el" href="namespaceOpenMS.html">OpenMS</a></li><li class="navelem"><a class="el" href="classOpenMS_1_1SimpleExtender.html">SimpleExtender</a></li> </ul>
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<div class="headertitle">
<div class="title">SimpleExtender< PeakType, FeatureType > Class Template Reference<div class="ingroups"><a class="el" href="group__FeatureFinder.html">FeatureFinder</a></div></div> </div>
</div><!--header-->
<div class="contents">
<p>Simple feature extension algorithm.
<a href="classOpenMS_1_1SimpleExtender.html#details">More...</a></p>
<p><code>#include <<a class="el" href="SimpleExtender_8h_source.html">OpenMS/TRANSFORMATIONS/FEATUREFINDER/SimpleExtender.h</a>></code></p>
<div class="dynheader">
Inheritance diagram for SimpleExtender< PeakType, FeatureType >:</div>
<div class="dyncontent">
<div class="center">
<img src="classOpenMS_1_1SimpleExtender.png" usemap="#SimpleExtender< PeakType, FeatureType >_map" alt=""/>
<map id="SimpleExtender< PeakType, FeatureType >_map" name="SimpleExtender< PeakType, FeatureType >_map">
<area href="classOpenMS_1_1FeaFiModule.html" title="Implements a module of the FeatureFinder algorithm. " alt="FeaFiModule< PeakType, FeatureType >" shape="rect" coords="0,56,260,80"/>
<area href="structOpenMS_1_1FeatureFinderDefs.html" title="The purpose of this struct is to provide definitions of classes and typedefs which are used throughou..." alt="FeatureFinderDefs" shape="rect" coords="270,56,530,80"/>
<area href="classOpenMS_1_1DefaultParamHandler.html" title="A base class for all classes handling default parameters. " alt="DefaultParamHandler" shape="rect" coords="0,0,260,24"/>
</map>
</div></div>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
Classes</h2></td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1SimpleExtender_1_1IndexWithPriority.html">IndexWithPriority</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A helper structure to sort indizes by their priority. <a href="structOpenMS_1_1SimpleExtender_1_1IndexWithPriority.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-types"></a>
Public Types</h2></td></tr>
<tr class="memitem:a79ea228cdc8755284e64dd9f625170a3"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1FeaFiModule.html">FeaFiModule</a>< <a class="el" href="namespaceOpenMS.html#a013338b7bdbb5c3b4c78666656070e23">PeakType</a>, <br class="typebreak"/>
FeatureType > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SimpleExtender.html#a79ea228cdc8755284e64dd9f625170a3">Base</a></td></tr>
<tr class="separator:a79ea228cdc8755284e64dd9f625170a3"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a4e4e002f0161bec9b732b12e2d0775e5"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1FeaFiModule.html#a221361082f641c3fccc58e9bc66aeee1">Base::IntensityType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SimpleExtender.html#a4e4e002f0161bec9b732b12e2d0775e5">IntensityType</a></td></tr>
<tr class="memdesc:a4e4e002f0161bec9b732b12e2d0775e5"><td class="mdescLeft"> </td><td class="mdescRight">Intensity of a data point. <a href="#a4e4e002f0161bec9b732b12e2d0775e5">More...</a><br/></td></tr>
<tr class="separator:a4e4e002f0161bec9b732b12e2d0775e5"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a82f6a21fbf0dcd96bd770645a4c1f5dc"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1FeaFiModule.html#a181486a43da338e31f089df7661f50bb">Base::CoordinateType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SimpleExtender.html#a82f6a21fbf0dcd96bd770645a4c1f5dc">CoordinateType</a></td></tr>
<tr class="memdesc:a82f6a21fbf0dcd96bd770645a4c1f5dc"><td class="mdescLeft"> </td><td class="mdescRight">Coordinates of a point (m/z and rt) <a href="#a82f6a21fbf0dcd96bd770645a4c1f5dc">More...</a><br/></td></tr>
<tr class="separator:a82f6a21fbf0dcd96bd770645a4c1f5dc"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a148f3853784fb91146ee0a2c97fbe152"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SimpleExtender.html#a148f3853784fb91146ee0a2c97fbe152">ProbabilityType</a></td></tr>
<tr class="memdesc:a148f3853784fb91146ee0a2c97fbe152"><td class="mdescLeft"> </td><td class="mdescRight">Priority of a point (see below) <a href="#a148f3853784fb91146ee0a2c97fbe152">More...</a><br/></td></tr>
<tr class="separator:a148f3853784fb91146ee0a2c97fbe152"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_types_classOpenMS_1_1FeaFiModule"><td colspan="2" onclick="javascript:toggleInherit('pub_types_classOpenMS_1_1FeaFiModule')"><img src="closed.png" alt="-"/> Public Types inherited from <a class="el" href="classOpenMS_1_1FeaFiModule.html">FeaFiModule< PeakType, FeatureType ></a></td></tr>
<tr class="memitem:a21ea3968c35235b6b3cd78a2190280d9 inherit pub_types_classOpenMS_1_1FeaFiModule"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1FeatureMap.html">FeatureMap</a>< FeatureType > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a21ea3968c35235b6b3cd78a2190280d9">FeatureMapType</a></td></tr>
<tr class="memdesc:a21ea3968c35235b6b3cd78a2190280d9 inherit pub_types_classOpenMS_1_1FeaFiModule"><td class="mdescLeft"> </td><td class="mdescRight">Output feature map type. <a href="#a21ea3968c35235b6b3cd78a2190280d9">More...</a><br/></td></tr>
<tr class="separator:a21ea3968c35235b6b3cd78a2190280d9 inherit pub_types_classOpenMS_1_1FeaFiModule"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:adf6f376e844058d129ce8ba868276643 inherit pub_types_classOpenMS_1_1FeaFiModule"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1MSExperiment.html">MSExperiment</a>< <a class="el" href="namespaceOpenMS.html#a013338b7bdbb5c3b4c78666656070e23">PeakType</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeaFiModule.html#adf6f376e844058d129ce8ba868276643">MapType</a></td></tr>
<tr class="memdesc:adf6f376e844058d129ce8ba868276643 inherit pub_types_classOpenMS_1_1FeaFiModule"><td class="mdescLeft"> </td><td class="mdescRight">Input map type. <a href="#adf6f376e844058d129ce8ba868276643">More...</a><br/></td></tr>
<tr class="separator:adf6f376e844058d129ce8ba868276643 inherit pub_types_classOpenMS_1_1FeaFiModule"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae4e0f0c176662a323a6a64d29ff986dd inherit pub_types_classOpenMS_1_1FeaFiModule"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1MSExperiment.html#a066042ae14211da37d4fa66d466bfa3e">MapType::SpectrumType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeaFiModule.html#ae4e0f0c176662a323a6a64d29ff986dd">SpectrumType</a></td></tr>
<tr class="memdesc:ae4e0f0c176662a323a6a64d29ff986dd inherit pub_types_classOpenMS_1_1FeaFiModule"><td class="mdescLeft"> </td><td class="mdescRight">Input spectrum type. <a href="#ae4e0f0c176662a323a6a64d29ff986dd">More...</a><br/></td></tr>
<tr class="separator:ae4e0f0c176662a323a6a64d29ff986dd inherit pub_types_classOpenMS_1_1FeaFiModule"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a221361082f641c3fccc58e9bc66aeee1 inherit pub_types_classOpenMS_1_1FeaFiModule"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1Peak2D.html#a4a8c5b2adc05e9ff96a007385bfe9b47">PeakType::IntensityType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a221361082f641c3fccc58e9bc66aeee1">IntensityType</a></td></tr>
<tr class="memdesc:a221361082f641c3fccc58e9bc66aeee1 inherit pub_types_classOpenMS_1_1FeaFiModule"><td class="mdescLeft"> </td><td class="mdescRight">Input intensity type. <a href="#a221361082f641c3fccc58e9bc66aeee1">More...</a><br/></td></tr>
<tr class="separator:a221361082f641c3fccc58e9bc66aeee1 inherit pub_types_classOpenMS_1_1FeaFiModule"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a181486a43da338e31f089df7661f50bb inherit pub_types_classOpenMS_1_1FeaFiModule"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1Peak2D.html#a063d40a3528749f1a905ab04d76387e0">PeakType::CoordinateType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a181486a43da338e31f089df7661f50bb">CoordinateType</a></td></tr>
<tr class="memdesc:a181486a43da338e31f089df7661f50bb inherit pub_types_classOpenMS_1_1FeaFiModule"><td class="mdescLeft"> </td><td class="mdescRight">Input coordinate type. <a href="#a181486a43da338e31f089df7661f50bb">More...</a><br/></td></tr>
<tr class="separator:a181486a43da338e31f089df7661f50bb inherit pub_types_classOpenMS_1_1FeaFiModule"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_types_structOpenMS_1_1FeatureFinderDefs"><td colspan="2" onclick="javascript:toggleInherit('pub_types_structOpenMS_1_1FeatureFinderDefs')"><img src="closed.png" alt="-"/> Public Types inherited from <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html">FeatureFinderDefs</a></td></tr>
<tr class="memitem:a3f3de3e0d751949b8d0b60ffb302944a inherit pub_types_structOpenMS_1_1FeatureFinderDefs"><td class="memItemLeft" align="right" valign="top">enum  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#a3f3de3e0d751949b8d0b60ffb302944a">Flag</a> { <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#a3f3de3e0d751949b8d0b60ffb302944aaa09b651ef326a9d8efcee5cc5b720ab4">UNUSED</a>,
<a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#a3f3de3e0d751949b8d0b60ffb302944aa1e780c62cb3fd2edcac39f739bbe6f6c">USED</a>
}</td></tr>
<tr class="memdesc:a3f3de3e0d751949b8d0b60ffb302944a"><td class="mdescLeft"> </td><td class="mdescRight">Flags that indicate if a peak is already used in a feature. <a href="structOpenMS_1_1FeatureFinderDefs.html#a3f3de3e0d751949b8d0b60ffb302944a">More...</a><br/></td></tr>
<tr class="separator:a3f3de3e0d751949b8d0b60ffb302944a inherit pub_types_structOpenMS_1_1FeatureFinderDefs"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aaee0bfd850887fdc58115cead9e9b8b9 inherit pub_types_structOpenMS_1_1FeatureFinderDefs"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="structOpenMS_1_1IsotopeCluster.html#a0cab124671a3ada269f0553e1c8934da">IsotopeCluster::IndexPair</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#aaee0bfd850887fdc58115cead9e9b8b9">IndexPair</a></td></tr>
<tr class="memdesc:aaee0bfd850887fdc58115cead9e9b8b9 inherit pub_types_structOpenMS_1_1FeatureFinderDefs"><td class="mdescLeft"> </td><td class="mdescRight">Index to peak consisting of two UInts (scan index / peak index) <a href="#aaee0bfd850887fdc58115cead9e9b8b9">More...</a><br/></td></tr>
<tr class="separator:aaee0bfd850887fdc58115cead9e9b8b9 inherit pub_types_structOpenMS_1_1FeatureFinderDefs"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:af01a99958d0b18999737158daf8820ac inherit pub_types_structOpenMS_1_1FeatureFinderDefs"><td class="memItemLeft" align="right" valign="top">typedef <br class="typebreak"/>
<a class="el" href="structOpenMS_1_1IsotopeCluster_1_1ChargedIndexSet.html">IsotopeCluster::ChargedIndexSet</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#af01a99958d0b18999737158daf8820ac">ChargedIndexSet</a></td></tr>
<tr class="memdesc:af01a99958d0b18999737158daf8820ac inherit pub_types_structOpenMS_1_1FeatureFinderDefs"><td class="mdescLeft"> </td><td class="mdescRight">Index to peak consisting of two UInts (scan index / peak index) with charge information. <a href="#af01a99958d0b18999737158daf8820ac">More...</a><br/></td></tr>
<tr class="separator:af01a99958d0b18999737158daf8820ac inherit pub_types_structOpenMS_1_1FeatureFinderDefs"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:af7439235b89a75354a2e87350e36834f inherit pub_types_structOpenMS_1_1FeatureFinderDefs"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="structOpenMS_1_1IsotopeCluster.html#aed4049efd4228c847ab300ac4c466eca">IsotopeCluster::IndexSet</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#af7439235b89a75354a2e87350e36834f">IndexSet</a></td></tr>
<tr class="memdesc:af7439235b89a75354a2e87350e36834f inherit pub_types_structOpenMS_1_1FeatureFinderDefs"><td class="mdescLeft"> </td><td class="mdescRight">A set of peak indices. <a href="#af7439235b89a75354a2e87350e36834f">More...</a><br/></td></tr>
<tr class="separator:af7439235b89a75354a2e87350e36834f inherit pub_types_structOpenMS_1_1FeatureFinderDefs"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:a5d4e59b887e694af404c49d0a684fd97"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SimpleExtender.html#a5d4e59b887e694af404c49d0a684fd97">SimpleExtender</a> (const <a class="el" href="classOpenMS_1_1MSExperiment.html">MSExperiment</a>< <a class="el" href="namespaceOpenMS.html#a013338b7bdbb5c3b4c78666656070e23">PeakType</a> > *map, <a class="el" href="classOpenMS_1_1FeatureMap.html">FeatureMap</a>< FeatureType > *features, <a class="el" href="classOpenMS_1_1FeatureFinder.html">FeatureFinder</a> *ff)</td></tr>
<tr class="memdesc:a5d4e59b887e694af404c49d0a684fd97"><td class="mdescLeft"> </td><td class="mdescRight">Constructor. <a href="#a5d4e59b887e694af404c49d0a684fd97">More...</a><br/></td></tr>
<tr class="separator:a5d4e59b887e694af404c49d0a684fd97"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a420c696605c1efb3452c768d665f6313"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SimpleExtender.html#a420c696605c1efb3452c768d665f6313">~SimpleExtender</a> ()</td></tr>
<tr class="memdesc:a420c696605c1efb3452c768d665f6313"><td class="mdescLeft"> </td><td class="mdescRight">destructor <a href="#a420c696605c1efb3452c768d665f6313">More...</a><br/></td></tr>
<tr class="separator:a420c696605c1efb3452c768d665f6313"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a1139a06b7cf1886d1977e5afcfddfea6"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SimpleExtender.html#a1139a06b7cf1886d1977e5afcfddfea6">extend</a> (const <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#af01a99958d0b18999737158daf8820ac">ChargedIndexSet</a> &seed_region, <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#af01a99958d0b18999737158daf8820ac">ChargedIndexSet</a> &result_region)</td></tr>
<tr class="memdesc:a1139a06b7cf1886d1977e5afcfddfea6"><td class="mdescLeft"> </td><td class="mdescRight">return next seed <a href="#a1139a06b7cf1886d1977e5afcfddfea6">More...</a><br/></td></tr>
<tr class="separator:a1139a06b7cf1886d1977e5afcfddfea6"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_methods_classOpenMS_1_1FeaFiModule"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classOpenMS_1_1FeaFiModule')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classOpenMS_1_1FeaFiModule.html">FeaFiModule< PeakType, FeatureType ></a></td></tr>
<tr class="memitem:ad3fe3d27b98fcd12d996b358e30723fa inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeaFiModule.html#ad3fe3d27b98fcd12d996b358e30723fa">FeaFiModule</a> (const <a class="el" href="classOpenMS_1_1MSExperiment.html">MSExperiment</a>< <a class="el" href="namespaceOpenMS.html#a013338b7bdbb5c3b4c78666656070e23">PeakType</a> > *map, <a class="el" href="classOpenMS_1_1FeatureMap.html">FeatureMap</a>< FeatureType > *features, <a class="el" href="classOpenMS_1_1FeatureFinder.html">FeatureFinder</a> *ff)</td></tr>
<tr class="memdesc:ad3fe3d27b98fcd12d996b358e30723fa inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="mdescLeft"> </td><td class="mdescRight">Constructor. <a href="#ad3fe3d27b98fcd12d996b358e30723fa">More...</a><br/></td></tr>
<tr class="separator:ad3fe3d27b98fcd12d996b358e30723fa inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aa14dc0b3522c854b9005fc9dd5c754d3 inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeaFiModule.html#aa14dc0b3522c854b9005fc9dd5c754d3">~FeaFiModule</a> ()</td></tr>
<tr class="memdesc:aa14dc0b3522c854b9005fc9dd5c754d3 inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="mdescLeft"> </td><td class="mdescRight">destructor <a href="#aa14dc0b3522c854b9005fc9dd5c754d3">More...</a><br/></td></tr>
<tr class="separator:aa14dc0b3522c854b9005fc9dd5c754d3 inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a4698fa90bfbdd5729e0e25c62345ff0d inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a221361082f641c3fccc58e9bc66aeee1">IntensityType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a4698fa90bfbdd5729e0e25c62345ff0d">getPeakIntensity</a> (const <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#aaee0bfd850887fdc58115cead9e9b8b9">FeatureFinderDefs::IndexPair</a> &index) const </td></tr>
<tr class="memdesc:a4698fa90bfbdd5729e0e25c62345ff0d inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="mdescLeft"> </td><td class="mdescRight">Returns the intensity of a peak. <a href="#a4698fa90bfbdd5729e0e25c62345ff0d">More...</a><br/></td></tr>
<tr class="separator:a4698fa90bfbdd5729e0e25c62345ff0d inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a606049d47faacd506705556d333849a2 inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a181486a43da338e31f089df7661f50bb">CoordinateType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a606049d47faacd506705556d333849a2">getPeakMz</a> (const <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#aaee0bfd850887fdc58115cead9e9b8b9">FeatureFinderDefs::IndexPair</a> &index) const </td></tr>
<tr class="memdesc:a606049d47faacd506705556d333849a2 inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="mdescLeft"> </td><td class="mdescRight">Returns the m/z of a peak. <a href="#a606049d47faacd506705556d333849a2">More...</a><br/></td></tr>
<tr class="separator:a606049d47faacd506705556d333849a2 inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a8e5564d7b686645a7d7d6f5aed8cd494 inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a181486a43da338e31f089df7661f50bb">CoordinateType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a8e5564d7b686645a7d7d6f5aed8cd494">getPeakRt</a> (const <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#aaee0bfd850887fdc58115cead9e9b8b9">FeatureFinderDefs::IndexPair</a> &index) const </td></tr>
<tr class="memdesc:a8e5564d7b686645a7d7d6f5aed8cd494 inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="mdescLeft"> </td><td class="mdescRight">Returns the retention time of a peak. <a href="#a8e5564d7b686645a7d7d6f5aed8cd494">More...</a><br/></td></tr>
<tr class="separator:a8e5564d7b686645a7d7d6f5aed8cd494 inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a9f755c03fd9b7a485fec02224cc858d7 inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a9f755c03fd9b7a485fec02224cc858d7">getNextMz</a> (<a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#aaee0bfd850887fdc58115cead9e9b8b9">FeatureFinderDefs::IndexPair</a> &index) const </td></tr>
<tr class="memdesc:a9f755c03fd9b7a485fec02224cc858d7 inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="mdescLeft"> </td><td class="mdescRight">fills <code>index</code> with the index of next peak in m/z dimension <a href="#a9f755c03fd9b7a485fec02224cc858d7">More...</a><br/></td></tr>
<tr class="separator:a9f755c03fd9b7a485fec02224cc858d7 inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a62c6d0208b4fc2bc51e55eea8ea1ce9d inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a62c6d0208b4fc2bc51e55eea8ea1ce9d">getPrevMz</a> (<a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#aaee0bfd850887fdc58115cead9e9b8b9">FeatureFinderDefs::IndexPair</a> &index) const </td></tr>
<tr class="memdesc:a62c6d0208b4fc2bc51e55eea8ea1ce9d inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="mdescLeft"> </td><td class="mdescRight">fills <code>index</code> with the index of previous peak in m/z dimension <a href="#a62c6d0208b4fc2bc51e55eea8ea1ce9d">More...</a><br/></td></tr>
<tr class="separator:a62c6d0208b4fc2bc51e55eea8ea1ce9d inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:adf52c00b457571ad74d59a5d6fd12d1a inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeaFiModule.html#adf52c00b457571ad74d59a5d6fd12d1a">getNextRt</a> (<a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#aaee0bfd850887fdc58115cead9e9b8b9">FeatureFinderDefs::IndexPair</a> &index)</td></tr>
<tr class="memdesc:adf52c00b457571ad74d59a5d6fd12d1a inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="mdescLeft"> </td><td class="mdescRight">fills <code>index</code> with the index of the nearest peak in the next scan <a href="#adf52c00b457571ad74d59a5d6fd12d1a">More...</a><br/></td></tr>
<tr class="separator:adf52c00b457571ad74d59a5d6fd12d1a inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ad4efb644d8a117edfaf7f0f5a9b34e0a inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeaFiModule.html#ad4efb644d8a117edfaf7f0f5a9b34e0a">getPrevRt</a> (<a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#aaee0bfd850887fdc58115cead9e9b8b9">FeatureFinderDefs::IndexPair</a> &index)</td></tr>
<tr class="memdesc:ad4efb644d8a117edfaf7f0f5a9b34e0a inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="mdescLeft"> </td><td class="mdescRight">fills <code>index</code> with the index of the nearest peak in the previous scan <a href="#ad4efb644d8a117edfaf7f0f5a9b34e0a">More...</a><br/></td></tr>
<tr class="separator:ad4efb644d8a117edfaf7f0f5a9b34e0a inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ac641d17ba54cde66c331d17bdee355e8 inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeaFiModule.html#ac641d17ba54cde66c331d17bdee355e8">addConvexHull</a> (const <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#af7439235b89a75354a2e87350e36834f">FeatureFinderDefs::IndexSet</a> &set, <a class="el" href="classOpenMS_1_1Feature.html">Feature</a> &feature) const </td></tr>
<tr class="memdesc:ac641d17ba54cde66c331d17bdee355e8 inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="mdescLeft"> </td><td class="mdescRight">Calculates the convex hull of a index <code>set</code> and adds it to the <code>feature</code>. <a href="#ac641d17ba54cde66c331d17bdee355e8">More...</a><br/></td></tr>
<tr class="separator:ac641d17ba54cde66c331d17bdee355e8 inherit pub_methods_classOpenMS_1_1FeaFiModule"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_methods_classOpenMS_1_1DefaultParamHandler"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classOpenMS_1_1DefaultParamHandler')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td></tr>
<tr class="memitem:afb6802fda161cb0c1a4a05597f94aecc inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#afb6802fda161cb0c1a4a05597f94aecc">DefaultParamHandler</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &name)</td></tr>
<tr class="memdesc:afb6802fda161cb0c1a4a05597f94aecc inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Constructor with name that is displayed in error messages. <a href="#afb6802fda161cb0c1a4a05597f94aecc">More...</a><br/></td></tr>
<tr class="separator:afb6802fda161cb0c1a4a05597f94aecc inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a954da7eef3cfddda446574eaadd20abb inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a954da7eef3cfddda446574eaadd20abb">DefaultParamHandler</a> (const <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &rhs)</td></tr>
<tr class="memdesc:a954da7eef3cfddda446574eaadd20abb inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Copy constructor. <a href="#a954da7eef3cfddda446574eaadd20abb">More...</a><br/></td></tr>
<tr class="separator:a954da7eef3cfddda446574eaadd20abb inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a11e9d6dd34fe8860874aa8abe0ec121b inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a11e9d6dd34fe8860874aa8abe0ec121b">~DefaultParamHandler</a> ()</td></tr>
<tr class="memdesc:a11e9d6dd34fe8860874aa8abe0ec121b inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Destructor. <a href="#a11e9d6dd34fe8860874aa8abe0ec121b">More...</a><br/></td></tr>
<tr class="separator:a11e9d6dd34fe8860874aa8abe0ec121b inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae6b6d68036a573a44f6609460ba2dfb6 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ae6b6d68036a573a44f6609460ba2dfb6">operator=</a> (const <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &rhs)</td></tr>
<tr class="memdesc:ae6b6d68036a573a44f6609460ba2dfb6 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Assignment operator. <a href="#ae6b6d68036a573a44f6609460ba2dfb6">More...</a><br/></td></tr>
<tr class="separator:ae6b6d68036a573a44f6609460ba2dfb6 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ac435f2dd4d9f9328db83af97129a8d7e inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ac435f2dd4d9f9328db83af97129a8d7e">operator==</a> (const <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &rhs) const </td></tr>
<tr class="memdesc:ac435f2dd4d9f9328db83af97129a8d7e inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Equality operator. <a href="#ac435f2dd4d9f9328db83af97129a8d7e">More...</a><br/></td></tr>
<tr class="separator:ac435f2dd4d9f9328db83af97129a8d7e inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:abc8067511cfc949ae942ea2b08588f81 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#abc8067511cfc949ae942ea2b08588f81">setParameters</a> (const <a class="el" href="classOpenMS_1_1Param.html">Param</a> &param)</td></tr>
<tr class="memdesc:abc8067511cfc949ae942ea2b08588f81 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Sets the parameters. <a href="#abc8067511cfc949ae942ea2b08588f81">More...</a><br/></td></tr>
<tr class="separator:abc8067511cfc949ae942ea2b08588f81 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a7f6aab5a7dfbdd1c062a4352a29361f3 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1Param.html">Param</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a7f6aab5a7dfbdd1c062a4352a29361f3">getParameters</a> () const </td></tr>
<tr class="memdesc:a7f6aab5a7dfbdd1c062a4352a29361f3 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Non-mutable access to the parameters. <a href="#a7f6aab5a7dfbdd1c062a4352a29361f3">More...</a><br/></td></tr>
<tr class="separator:a7f6aab5a7dfbdd1c062a4352a29361f3 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a02f02fa9832ca3e8d47c575a39803a2a inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1Param.html">Param</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a02f02fa9832ca3e8d47c575a39803a2a">getDefaults</a> () const </td></tr>
<tr class="memdesc:a02f02fa9832ca3e8d47c575a39803a2a inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Non-mutable access to the default parameters. <a href="#a02f02fa9832ca3e8d47c575a39803a2a">More...</a><br/></td></tr>
<tr class="separator:a02f02fa9832ca3e8d47c575a39803a2a inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aaee0f2845288173de9f6ad47e6ad31d5 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1String.html">String</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#aaee0f2845288173de9f6ad47e6ad31d5">getName</a> () const </td></tr>
<tr class="memdesc:aaee0f2845288173de9f6ad47e6ad31d5 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Non-mutable access to the name. <a href="#aaee0f2845288173de9f6ad47e6ad31d5">More...</a><br/></td></tr>
<tr class="separator:aaee0f2845288173de9f6ad47e6ad31d5 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a77d37f2e1c12e8bd33ea0e660a89e927 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a77d37f2e1c12e8bd33ea0e660a89e927">setName</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &name)</td></tr>
<tr class="memdesc:a77d37f2e1c12e8bd33ea0e660a89e927 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Mutable access to the name. <a href="#a77d37f2e1c12e8bd33ea0e660a89e927">More...</a><br/></td></tr>
<tr class="separator:a77d37f2e1c12e8bd33ea0e660a89e927 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a768d4a2093627a2f34728656a9721bdf inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const std::vector< <a class="el" href="classOpenMS_1_1String.html">String</a> > & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a768d4a2093627a2f34728656a9721bdf">getSubsections</a> () const </td></tr>
<tr class="memdesc:a768d4a2093627a2f34728656a9721bdf inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Non-mutable access to the registered subsections. <a href="#a768d4a2093627a2f34728656a9721bdf">More...</a><br/></td></tr>
<tr class="separator:a768d4a2093627a2f34728656a9721bdf inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pro-methods"></a>
Protected Member Functions</h2></td></tr>
<tr class="memitem:a776f7572fc4f466e9527ca233471920d"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SimpleExtender.html#a776f7572fc4f466e9527ca233471920d">updateMembers_</a> ()</td></tr>
<tr class="memdesc:a776f7572fc4f466e9527ca233471920d"><td class="mdescLeft"> </td><td class="mdescRight">This method is used to update extra member variables at the end of the <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#abc8067511cfc949ae942ea2b08588f81" title="Sets the parameters. ">setParameters()</a> method. <a href="#a776f7572fc4f466e9527ca233471920d">More...</a><br/></td></tr>
<tr class="separator:a776f7572fc4f466e9527ca233471920d"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a0d642765897747c34debb18095cde304"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SimpleExtender.html#a0d642765897747c34debb18095cde304">writeDebugFile_</a> (const std::vector< <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#aaee0bfd850887fdc58115cead9e9b8b9">IndexPair</a> > &peaks, <a class="el" href="group__Concept.html#gaba0996d26f7be2572973245b51852757">UInt</a> nr_feat)</td></tr>
<tr class="memdesc:a0d642765897747c34debb18095cde304"><td class="mdescLeft"> </td><td class="mdescRight">write DTA2D debug file for the feature with index <code>nr_feat</code> <a href="#a0d642765897747c34debb18095cde304">More...</a><br/></td></tr>
<tr class="separator:a0d642765897747c34debb18095cde304"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:af560e97f4f00d467116a5791bcdf7ca5"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SimpleExtender.html#af560e97f4f00d467116a5791bcdf7ca5">isTooFarFromCentroid_</a> (const <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#aaee0bfd850887fdc58115cead9e9b8b9">IndexPair</a> &index)</td></tr>
<tr class="memdesc:af560e97f4f00d467116a5791bcdf7ca5"><td class="mdescLeft"> </td><td class="mdescRight">Checks if the current peak is too far from the centroid. <a href="#af560e97f4f00d467116a5791bcdf7ca5">More...</a><br/></td></tr>
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<tr class="memitem:a36b5d54b1a3a55b7cf46576fd849c299"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SimpleExtender.html#a36b5d54b1a3a55b7cf46576fd849c299">moveMzUp_</a> (const <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#aaee0bfd850887fdc58115cead9e9b8b9">IndexPair</a> &index)</td></tr>
<tr class="memdesc:a36b5d54b1a3a55b7cf46576fd849c299"><td class="mdescLeft"> </td><td class="mdescRight">Extends the seed into positive m/z direction. <a href="#a36b5d54b1a3a55b7cf46576fd849c299">More...</a><br/></td></tr>
<tr class="separator:a36b5d54b1a3a55b7cf46576fd849c299"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a9c6a1a832b915ac89376cec9dbf009b7"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SimpleExtender.html#a9c6a1a832b915ac89376cec9dbf009b7">moveMzDown_</a> (const <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#aaee0bfd850887fdc58115cead9e9b8b9">IndexPair</a> &index)</td></tr>
<tr class="memdesc:a9c6a1a832b915ac89376cec9dbf009b7"><td class="mdescLeft"> </td><td class="mdescRight">Extends the seed into negative m/z direction. <a href="#a9c6a1a832b915ac89376cec9dbf009b7">More...</a><br/></td></tr>
<tr class="separator:a9c6a1a832b915ac89376cec9dbf009b7"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:af79f8c231da6a9d674c28941d313d315"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SimpleExtender.html#af79f8c231da6a9d674c28941d313d315">moveRtUp_</a> (const <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#aaee0bfd850887fdc58115cead9e9b8b9">IndexPair</a> &index)</td></tr>
<tr class="memdesc:af79f8c231da6a9d674c28941d313d315"><td class="mdescLeft"> </td><td class="mdescRight">Extension into positive rt dimension. <a href="#af79f8c231da6a9d674c28941d313d315">More...</a><br/></td></tr>
<tr class="separator:af79f8c231da6a9d674c28941d313d315"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a7f4bbff96a2ea0e3d46711022de26b29"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SimpleExtender.html#a7f4bbff96a2ea0e3d46711022de26b29">moveRtDown_</a> (const <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#aaee0bfd850887fdc58115cead9e9b8b9">IndexPair</a> &index)</td></tr>
<tr class="memdesc:a7f4bbff96a2ea0e3d46711022de26b29"><td class="mdescLeft"> </td><td class="mdescRight">Extends the seed into negative retention time direction. <a href="#a7f4bbff96a2ea0e3d46711022de26b29">More...</a><br/></td></tr>
<tr class="separator:a7f4bbff96a2ea0e3d46711022de26b29"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:af7842efcd3ecab40cf021f5cae359dbe"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1SimpleExtender.html#a148f3853784fb91146ee0a2c97fbe152">ProbabilityType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SimpleExtender.html#af7842efcd3ecab40cf021f5cae359dbe">computePeakPriority_</a> (const <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#aaee0bfd850887fdc58115cead9e9b8b9">IndexPair</a> &index)</td></tr>
<tr class="memdesc:af7842efcd3ecab40cf021f5cae359dbe"><td class="mdescLeft"> </td><td class="mdescRight">Computes the priority of a peak as function of intensity and distance from seed. <a href="#af7842efcd3ecab40cf021f5cae359dbe">More...</a><br/></td></tr>
<tr class="separator:af7842efcd3ecab40cf021f5cae359dbe"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a8597c0a5982f48f9a8387e286b0251b0"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SimpleExtender.html#a8597c0a5982f48f9a8387e286b0251b0">checkNeighbour_</a> (const <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#aaee0bfd850887fdc58115cead9e9b8b9">IndexPair</a> &index)</td></tr>
<tr class="memdesc:a8597c0a5982f48f9a8387e286b0251b0"><td class="mdescLeft"> </td><td class="mdescRight">Checks the neighbours of the current for insertion into the boundary. <a href="#a8597c0a5982f48f9a8387e286b0251b0">More...</a><br/></td></tr>
<tr class="separator:a8597c0a5982f48f9a8387e286b0251b0"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pro_methods_classOpenMS_1_1DefaultParamHandler"><td colspan="2" onclick="javascript:toggleInherit('pro_methods_classOpenMS_1_1DefaultParamHandler')"><img src="closed.png" alt="-"/> Protected Member Functions inherited from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td></tr>
<tr class="memitem:a2802c591e6d7fd3fd9cc35f5e875d0ba inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a2802c591e6d7fd3fd9cc35f5e875d0ba">defaultsToParam_</a> ()</td></tr>
<tr class="memdesc:a2802c591e6d7fd3fd9cc35f5e875d0ba inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Updates the parameters after the defaults have been set in the constructor. <a href="#a2802c591e6d7fd3fd9cc35f5e875d0ba">More...</a><br/></td></tr>
<tr class="separator:a2802c591e6d7fd3fd9cc35f5e875d0ba inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pro-attribs"></a>
Protected Attributes</h2></td></tr>
<tr class="memitem:a5e88ec4351e6e6835be11ef6fd88a800"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Math_1_1AveragePosition.html">Math::AveragePosition</a>< 2 > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SimpleExtender.html#a5e88ec4351e6e6835be11ef6fd88a800">running_avg_</a></td></tr>
<tr class="memdesc:a5e88ec4351e6e6835be11ef6fd88a800"><td class="mdescLeft"> </td><td class="mdescRight">keeps an running average of the peak coordinates weighted by the intensities <a href="#a5e88ec4351e6e6835be11ef6fd88a800">More...</a><br/></td></tr>
<tr class="separator:a5e88ec4351e6e6835be11ef6fd88a800"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a9d351425833907a2744bbfa08ef60c3e"><td class="memItemLeft" align="right" valign="top">std::map< <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#aaee0bfd850887fdc58115cead9e9b8b9">IndexPair</a>, <br class="typebreak"/>
<a class="el" href="classOpenMS_1_1SimpleExtender.html#a148f3853784fb91146ee0a2c97fbe152">ProbabilityType</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SimpleExtender.html#a9d351425833907a2744bbfa08ef60c3e">priorities_</a></td></tr>
<tr class="memdesc:a9d351425833907a2744bbfa08ef60c3e"><td class="mdescLeft"> </td><td class="mdescRight">Keeps track of peaks already included in the boundary (value is priority of peak) <a href="#a9d351425833907a2744bbfa08ef60c3e">More...</a><br/></td></tr>
<tr class="separator:a9d351425833907a2744bbfa08ef60c3e"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a3ff45f6c20e60f681eb4a4057046365a"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1DPosition.html">DPosition</a>< 2 > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SimpleExtender.html#a3ff45f6c20e60f681eb4a4057046365a">last_pos_extracted_</a></td></tr>
<tr class="memdesc:a3ff45f6c20e60f681eb4a4057046365a"><td class="mdescLeft"> </td><td class="mdescRight">Position of last peak extracted from the boundary (used to compute the priority of neighbouring peaks) <a href="#a3ff45f6c20e60f681eb4a4057046365a">More...</a><br/></td></tr>
<tr class="separator:a3ff45f6c20e60f681eb4a4057046365a"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ab858156ff4f42ae4048114b536c4d6ca"><td class="memItemLeft" align="right" valign="top">std::priority_queue<br class="typebreak"/>
< <a class="el" href="structOpenMS_1_1SimpleExtender_1_1IndexWithPriority.html">IndexWithPriority</a>, <br class="typebreak"/>
std::vector< <a class="el" href="structOpenMS_1_1SimpleExtender_1_1IndexWithPriority.html">IndexWithPriority</a> ><br class="typebreak"/>
, typename <br class="typebreak"/>
<a class="el" href="structOpenMS_1_1SimpleExtender_1_1IndexWithPriority_1_1PriorityLess.html">IndexWithPriority::PriorityLess</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SimpleExtender.html#ab858156ff4f42ae4048114b536c4d6ca">boundary_</a></td></tr>
<tr class="memdesc:ab858156ff4f42ae4048114b536c4d6ca"><td class="mdescLeft"> </td><td class="mdescRight">Represents the boundary of a feature. <a href="#ab858156ff4f42ae4048114b536c4d6ca">More...</a><br/></td></tr>
<tr class="separator:ab858156ff4f42ae4048114b536c4d6ca"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a889c3e7e8b35115eea733b1204872d86"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a221361082f641c3fccc58e9bc66aeee1">IntensityType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SimpleExtender.html#a889c3e7e8b35115eea733b1204872d86">intensity_threshold_</a></td></tr>
<tr class="memdesc:a889c3e7e8b35115eea733b1204872d86"><td class="mdescLeft"> </td><td class="mdescRight">Mininum intensity of a boundary point. Calculated from 'intensity_factor' and the seed intensity. <a href="#a889c3e7e8b35115eea733b1204872d86">More...</a><br/></td></tr>
<tr class="separator:a889c3e7e8b35115eea733b1204872d86"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a18a547e6c7ecaf916c40c86d2739d876"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a181486a43da338e31f089df7661f50bb">CoordinateType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SimpleExtender.html#a18a547e6c7ecaf916c40c86d2739d876">dist_mz_up_</a></td></tr>
<tr class="memdesc:a18a547e6c7ecaf916c40c86d2739d876"><td class="mdescLeft"> </td><td class="mdescRight">Maximum distance to seed in positive m/z. <a href="#a18a547e6c7ecaf916c40c86d2739d876">More...</a><br/></td></tr>
<tr class="separator:a18a547e6c7ecaf916c40c86d2739d876"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a57d39ae1e384f0f536b054e012d082d8"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a181486a43da338e31f089df7661f50bb">CoordinateType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SimpleExtender.html#a57d39ae1e384f0f536b054e012d082d8">dist_mz_down_</a></td></tr>
<tr class="memdesc:a57d39ae1e384f0f536b054e012d082d8"><td class="mdescLeft"> </td><td class="mdescRight">Maximum distance to seed in negative m/z. <a href="#a57d39ae1e384f0f536b054e012d082d8">More...</a><br/></td></tr>
<tr class="separator:a57d39ae1e384f0f536b054e012d082d8"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:acd6346d244fe3056de90cd27ab700b79"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a181486a43da338e31f089df7661f50bb">CoordinateType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SimpleExtender.html#acd6346d244fe3056de90cd27ab700b79">dist_rt_up_</a></td></tr>
<tr class="memdesc:acd6346d244fe3056de90cd27ab700b79"><td class="mdescLeft"> </td><td class="mdescRight">Maximum distance to seed in positive retention time. <a href="#acd6346d244fe3056de90cd27ab700b79">More...</a><br/></td></tr>
<tr class="separator:acd6346d244fe3056de90cd27ab700b79"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a6a58dff295c66bfc5fc3ad241aef707b"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a181486a43da338e31f089df7661f50bb">CoordinateType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SimpleExtender.html#a6a58dff295c66bfc5fc3ad241aef707b">dist_rt_down_</a></td></tr>
<tr class="memdesc:a6a58dff295c66bfc5fc3ad241aef707b"><td class="mdescLeft"> </td><td class="mdescRight">Maximum distance to seed in negative retention time. <a href="#a6a58dff295c66bfc5fc3ad241aef707b">More...</a><br/></td></tr>
<tr class="separator:a6a58dff295c66bfc5fc3ad241aef707b"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a20f835e907d9386f5ba2a89f14c3734c"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1SimpleExtender.html#a148f3853784fb91146ee0a2c97fbe152">ProbabilityType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SimpleExtender.html#a20f835e907d9386f5ba2a89f14c3734c">priority_threshold_</a></td></tr>
<tr class="memdesc:a20f835e907d9386f5ba2a89f14c3734c"><td class="mdescLeft"> </td><td class="mdescRight">Minium priority for points in the feature region (priority is function of intensity and distance to seed) <a href="#a20f835e907d9386f5ba2a89f14c3734c">More...</a><br/></td></tr>
<tr class="separator:a20f835e907d9386f5ba2a89f14c3734c"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a2a565aa56d3937ea9ceefca1780ace7d"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#af01a99958d0b18999737158daf8820ac">ChargedIndexSet</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SimpleExtender.html#a2a565aa56d3937ea9ceefca1780ace7d">region_</a></td></tr>
<tr class="memdesc:a2a565aa56d3937ea9ceefca1780ace7d"><td class="mdescLeft"> </td><td class="mdescRight">charged index set <a href="#a2a565aa56d3937ea9ceefca1780ace7d">More...</a><br/></td></tr>
<tr class="separator:a2a565aa56d3937ea9ceefca1780ace7d"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pro_attribs_classOpenMS_1_1FeaFiModule"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classOpenMS_1_1FeaFiModule')"><img src="closed.png" alt="-"/> Protected Attributes inherited from <a class="el" href="classOpenMS_1_1FeaFiModule.html">FeaFiModule< PeakType, FeatureType ></a></td></tr>
<tr class="memitem:a365c5cf67d48519199fe00cb5688d628 inherit pro_attribs_classOpenMS_1_1FeaFiModule"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1FeaFiModule.html#adf6f376e844058d129ce8ba868276643">MapType</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a365c5cf67d48519199fe00cb5688d628">map_</a></td></tr>
<tr class="memdesc:a365c5cf67d48519199fe00cb5688d628 inherit pro_attribs_classOpenMS_1_1FeaFiModule"><td class="mdescLeft"> </td><td class="mdescRight">Input data pointer. <a href="#a365c5cf67d48519199fe00cb5688d628">More...</a><br/></td></tr>
<tr class="separator:a365c5cf67d48519199fe00cb5688d628 inherit pro_attribs_classOpenMS_1_1FeaFiModule"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a5f09052343ef99616ad653897841ce3e inherit pro_attribs_classOpenMS_1_1FeaFiModule"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a21ea3968c35235b6b3cd78a2190280d9">FeatureMapType</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a5f09052343ef99616ad653897841ce3e">features_</a></td></tr>
<tr class="memdesc:a5f09052343ef99616ad653897841ce3e inherit pro_attribs_classOpenMS_1_1FeaFiModule"><td class="mdescLeft"> </td><td class="mdescRight">Output data pointer. <a href="#a5f09052343ef99616ad653897841ce3e">More...</a><br/></td></tr>
<tr class="separator:a5f09052343ef99616ad653897841ce3e inherit pro_attribs_classOpenMS_1_1FeaFiModule"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:adf68cb378c76b322b2cc4dbb2c145a3e inherit pro_attribs_classOpenMS_1_1FeaFiModule"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1FeatureFinder.html">FeatureFinder</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeaFiModule.html#adf68cb378c76b322b2cc4dbb2c145a3e">ff_</a></td></tr>
<tr class="memdesc:adf68cb378c76b322b2cc4dbb2c145a3e inherit pro_attribs_classOpenMS_1_1FeaFiModule"><td class="mdescLeft"> </td><td class="mdescRight">Pointer to the calling <a class="el" href="classOpenMS_1_1FeatureFinder.html" title="The main feature finder class. ">FeatureFinder</a> that is used to access the feature flags and report progress. <a href="#adf68cb378c76b322b2cc4dbb2c145a3e">More...</a><br/></td></tr>
<tr class="separator:adf68cb378c76b322b2cc4dbb2c145a3e inherit pro_attribs_classOpenMS_1_1FeaFiModule"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pro_attribs_classOpenMS_1_1DefaultParamHandler"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classOpenMS_1_1DefaultParamHandler')"><img src="closed.png" alt="-"/> Protected Attributes inherited from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td></tr>
<tr class="memitem:a28c73e623c63a4fe3bfceb1ae8274f39 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Param.html">Param</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a28c73e623c63a4fe3bfceb1ae8274f39">param_</a></td></tr>
<tr class="memdesc:a28c73e623c63a4fe3bfceb1ae8274f39 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Container for current parameters. <a href="#a28c73e623c63a4fe3bfceb1ae8274f39">More...</a><br/></td></tr>
<tr class="separator:a28c73e623c63a4fe3bfceb1ae8274f39 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a761b1937850c141d0c6fff0e4d633a04 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Param.html">Param</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a761b1937850c141d0c6fff0e4d633a04">defaults_</a></td></tr>
<tr class="memdesc:a761b1937850c141d0c6fff0e4d633a04 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Container for default parameters. This member should be filled in the constructor of derived classes! <a href="#a761b1937850c141d0c6fff0e4d633a04">More...</a><br/></td></tr>
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<tr class="memitem:ac4b0e20bc59c7a5afe016c69067e428c inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">std::vector< <a class="el" href="classOpenMS_1_1String.html">String</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ac4b0e20bc59c7a5afe016c69067e428c">subsections_</a></td></tr>
<tr class="memdesc:ac4b0e20bc59c7a5afe016c69067e428c inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Container for registered subsections. This member should be filled in the constructor of derived classes! <a href="#ac4b0e20bc59c7a5afe016c69067e428c">More...</a><br/></td></tr>
<tr class="separator:ac4b0e20bc59c7a5afe016c69067e428c inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a5a51f3f150b09068256195e934339a19 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a5a51f3f150b09068256195e934339a19">error_name_</a></td></tr>
<tr class="memdesc:a5a51f3f150b09068256195e934339a19 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Name that is displayed in error messages during the parameter checking. <a href="#a5a51f3f150b09068256195e934339a19">More...</a><br/></td></tr>
<tr class="separator:a5a51f3f150b09068256195e934339a19 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a7c3b265b697a57615da5cd3274780efd inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a7c3b265b697a57615da5cd3274780efd">check_defaults_</a></td></tr>
<tr class="memdesc:a7c3b265b697a57615da5cd3274780efd inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">If this member is set to false no checking if parameters in done;. <a href="#a7c3b265b697a57615da5cd3274780efd">More...</a><br/></td></tr>
<tr class="separator:a7c3b265b697a57615da5cd3274780efd inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aba444910e4fccb93f91bf7ab135f508a inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#aba444910e4fccb93f91bf7ab135f508a">warn_empty_defaults_</a></td></tr>
<tr class="memdesc:aba444910e4fccb93f91bf7ab135f508a inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">If this member is set to false no warning is emitted when defaults are empty;. <a href="#aba444910e4fccb93f91bf7ab135f508a">More...</a><br/></td></tr>
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</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-methods"></a>
Private Member Functions</h2></td></tr>
<tr class="memitem:a4dd25252cea93b2f55d6e5867ce513bd"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SimpleExtender.html#a4dd25252cea93b2f55d6e5867ce513bd">SimpleExtender</a> ()</td></tr>
<tr class="memdesc:a4dd25252cea93b2f55d6e5867ce513bd"><td class="mdescLeft"> </td><td class="mdescRight">Not implemented. <a href="#a4dd25252cea93b2f55d6e5867ce513bd">More...</a><br/></td></tr>
<tr class="separator:a4dd25252cea93b2f55d6e5867ce513bd"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:abc23946becf3ace5a04ce8da5d03d41a"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1SimpleExtender.html">SimpleExtender</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SimpleExtender.html#abc23946becf3ace5a04ce8da5d03d41a">operator=</a> (const <a class="el" href="classOpenMS_1_1SimpleExtender.html">SimpleExtender</a> &)</td></tr>
<tr class="memdesc:abc23946becf3ace5a04ce8da5d03d41a"><td class="mdescLeft"> </td><td class="mdescRight">Not implemented. <a href="#abc23946becf3ace5a04ce8da5d03d41a">More...</a><br/></td></tr>
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<tr class="memitem:a47898514e5c201da8316848fa4283f1c"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SimpleExtender.html#a47898514e5c201da8316848fa4283f1c">SimpleExtender</a> (const <a class="el" href="classOpenMS_1_1SimpleExtender.html">SimpleExtender</a> &)</td></tr>
<tr class="memdesc:a47898514e5c201da8316848fa4283f1c"><td class="mdescLeft"> </td><td class="mdescRight">Not implemented. <a href="#a47898514e5c201da8316848fa4283f1c">More...</a><br/></td></tr>
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><h3>template<class PeakType, class FeatureType><br/>
class OpenMS::SimpleExtender< PeakType, FeatureType ></h3>
<p>Simple feature extension algorithm. </p>
<p>This algorithm implements the extension phase of the <a class="el" href="classOpenMS_1_1FeatureFinder.html" title="The main feature finder class. ">FeatureFinder</a> as described by Groepl et al. (2005)</p>
<p>We want to determine a region around a seed that is provided by the seeder. Initially, this region is empty. The boundary of this region is implemented using a MutablePriorityQueue which contains only the seed at the beginning.</p>
<p>At each step, we choose a data point from the boundary, move it into the region and explore the neigbourhood of this point in a cross-wise manner (m/z up, m/z down, rt up and rt down). During this exploration we compute the priority of all encountered points as a function of the distance from the extracted point. If this priority exceeds a threshold, we insert the corresponding point into the boundary and proceed.</p>
<p>We stop the extension phase if all peaks contained in the boundary have an intensity lower than a threshold or are too distant from the centroid of the feature.</p>
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<img src="SimpleExtender.png" alt="SimpleExtender.png"/>
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<B>Parameters of this class are:</B><BR><BR>
<table border="1" style="border-style:solid; border-collapse:collapse; border-color:#c0c0c0;" width="100%" cellpadding="4">
<tr style="border-bottom:1px solid black; background:#fffff0"><th>Name</th><th>Type</th><th>Default</th><th>Restrictions</th><th>Description</th></tr>
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<td style="vertical-align:top"><b>dist_mz_up</b></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">6</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">Maximum high m/z distance of peak in the region/boundary from the seed.</td>
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<td style="vertical-align:top"><b>dist_mz_down</b></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">2</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">Maximum low m/z distance of peak in the region/boundary from the seed.</td>
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<td style="vertical-align:top"><b>dist_rt_up</b></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">5</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">Maximum high RT distance of peak in the region/boundary from the seed.</td>
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<td style="vertical-align:top"><b>dist_rt_down</b></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">5</td>
<td style="vertical-align:top">min: 0</td><td style="vertical-align:top">Maximum low RT distance of peak in the region/boundary from the seed.</td>
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<td style="vertical-align:top"><i>priority_thr</i></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">-0.1</td>
<td style="vertical-align:top"> </td><td style="vertical-align:top">Minimum priority for data points to be included into the boundary of the feature (default 0.0). The priority of a data point is a function of its intensity and its distance to the last point included into the feature region. Setting this threshold to zero or a very small value is usually a good idea.</td>
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<td style="vertical-align:top"><b>intensity_factor</b></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">0.03</td>
<td style="vertical-align:top">min: 0 max: 1</td><td style="vertical-align:top">Influences for intensity (ion count) threshold in the feature extension. We include only raw data points into this region if their intensity is larger than [intensity_factor * (intensity of the seed)].</td>
</tr>
</table>
<br>
<b>Note:</b>
<UL style="margin-top:0px;">
<LI> If a section name is documented, the documentation is displayed as tooltip.
<LI> Advanced parameter names are italic.
</UL>
</div><h2 class="groupheader">Member Typedef Documentation</h2>
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<td class="memname">typedef <a class="el" href="classOpenMS_1_1FeaFiModule.html">FeaFiModule</a><<a class="el" href="namespaceOpenMS.html#a013338b7bdbb5c3b4c78666656070e23">PeakType</a>, FeatureType> <a class="el" href="classOpenMS_1_1SimpleExtender.html#a79ea228cdc8755284e64dd9f625170a3">Base</a></td>
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</div><div class="memdoc">
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<td class="memname">typedef <a class="el" href="classOpenMS_1_1FeaFiModule.html#a181486a43da338e31f089df7661f50bb">Base::CoordinateType</a> <a class="el" href="classOpenMS_1_1FeaFiModule.html#a181486a43da338e31f089df7661f50bb">CoordinateType</a></td>
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<p>Coordinates of a point (m/z and rt) </p>
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<td class="memname">typedef <a class="el" href="classOpenMS_1_1FeaFiModule.html#a221361082f641c3fccc58e9bc66aeee1">Base::IntensityType</a> <a class="el" href="classOpenMS_1_1FeaFiModule.html#a221361082f641c3fccc58e9bc66aeee1">IntensityType</a></td>
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<p>Intensity of a data point. </p>
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<td class="memname">typedef <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> <a class="el" href="classOpenMS_1_1SimpleExtender.html#a148f3853784fb91146ee0a2c97fbe152">ProbabilityType</a></td>
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</div><div class="memdoc">
<p>Priority of a point (see below) </p>
</div>
</div>
<h2 class="groupheader">Constructor & Destructor Documentation</h2>
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<td class="memname"><a class="el" href="classOpenMS_1_1SimpleExtender.html">SimpleExtender</a> </td>
<td>(</td>
<td class="paramtype">const <a class="el" href="classOpenMS_1_1MSExperiment.html">MSExperiment</a>< <a class="el" href="namespaceOpenMS.html#a013338b7bdbb5c3b4c78666656070e23">PeakType</a> > * </td>
<td class="paramname"><em>map</em>, </td>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype"><a class="el" href="classOpenMS_1_1FeatureMap.html">FeatureMap</a>< FeatureType > * </td>
<td class="paramname"><em>features</em>, </td>
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<td class="paramkey"></td>
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<td class="paramtype"><a class="el" href="classOpenMS_1_1FeatureFinder.html">FeatureFinder</a> * </td>
<td class="paramname"><em>ff</em> </td>
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<td></td>
<td>)</td>
<td></td><td></td>
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<span class="mlabels"><span class="mlabel">inline</span></span> </td>
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<p>Constructor. </p>
<p>References <a class="el" href="classOpenMS_1_1StringList.html#a5f86b59b547048311dd50df5fb6d3bb5">StringList::create()</a>, <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a761b1937850c141d0c6fff0e4d633a04">DefaultParamHandler::defaults_</a>, <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a2802c591e6d7fd3fd9cc35f5e875d0ba">DefaultParamHandler::defaultsToParam_()</a>, <a class="el" href="classOpenMS_1_1Param.html#a6b40506fffbae670045d065c354bb9b8">Param::setMaxFloat()</a>, <a class="el" href="classOpenMS_1_1Param.html#aadc7a8536eb15f8c6fa05eefca0e25be">Param::setMinFloat()</a>, <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a77d37f2e1c12e8bd33ea0e660a89e927">DefaultParamHandler::setName()</a>, and <a class="el" href="classOpenMS_1_1Param.html#a432099944e11263aa20aaf8ea1389790">Param::setValue()</a>.</p>
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<td class="memname">virtual ~<a class="el" href="classOpenMS_1_1SimpleExtender.html">SimpleExtender</a> </td>
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<p>destructor </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1SimpleExtender.html">SimpleExtender</a> </td>
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<p>Not implemented. </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1SimpleExtender.html">SimpleExtender</a> </td>
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<td class="paramtype">const <a class="el" href="classOpenMS_1_1SimpleExtender.html">SimpleExtender</a>< <a class="el" href="namespaceOpenMS.html#a013338b7bdbb5c3b4c78666656070e23">PeakType</a>, FeatureType > & </td>
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<p>Not implemented. </p>
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<h2 class="groupheader">Member Function Documentation</h2>
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<td class="memname">void checkNeighbour_ </td>
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<td class="paramtype">const <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#aaee0bfd850887fdc58115cead9e9b8b9">IndexPair</a> & </td>
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<p>Checks the neighbours of the current for insertion into the boundary. </p>
<p>References <a class="el" href="classOpenMS_1_1SimpleExtender.html#ab858156ff4f42ae4048114b536c4d6ca">SimpleExtender< PeakType, FeatureType >::boundary_</a>, <a class="el" href="classOpenMS_1_1SimpleExtender.html#af7842efcd3ecab40cf021f5cae359dbe">SimpleExtender< PeakType, FeatureType >::computePeakPriority_()</a>, <a class="el" href="classOpenMS_1_1FeaFiModule.html#adf68cb378c76b322b2cc4dbb2c145a3e">FeaFiModule< PeakType, FeatureType >::ff_</a>, <a class="el" href="classOpenMS_1_1FeatureFinder.html#a91adbb58dfeb79d2b5d78c1047f406c9">FeatureFinder::getPeakFlag()</a>, <a class="el" href="classOpenMS_1_1FeaFiModule.html#a4698fa90bfbdd5729e0e25c62345ff0d">FeaFiModule< PeakType, FeatureType >::getPeakIntensity()</a>, <a class="el" href="classOpenMS_1_1SimpleExtender.html#a889c3e7e8b35115eea733b1204872d86">SimpleExtender< PeakType, FeatureType >::intensity_threshold_</a>, <a class="el" href="group__Conditions.html#ga45a74ea28109e7e1ed992fbd2ee97778">OPENMS_PRECONDITION</a>, <a class="el" href="classOpenMS_1_1SimpleExtender.html#a9d351425833907a2744bbfa08ef60c3e">SimpleExtender< PeakType, FeatureType >::priorities_</a>, <a class="el" href="classOpenMS_1_1SimpleExtender.html#a20f835e907d9386f5ba2a89f14c3734c">SimpleExtender< PeakType, FeatureType >::priority_threshold_</a>, <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#a3f3de3e0d751949b8d0b60ffb302944aaa09b651ef326a9d8efcee5cc5b720ab4">FeatureFinderDefs::UNUSED</a>, and <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#a3f3de3e0d751949b8d0b60ffb302944aa1e780c62cb3fd2edcac39f739bbe6f6c">FeatureFinderDefs::USED</a>.</p>
<p>Referenced by <a class="el" href="classOpenMS_1_1SimpleExtender.html#a9c6a1a832b915ac89376cec9dbf009b7">SimpleExtender< PeakType, FeatureType >::moveMzDown_()</a>, <a class="el" href="classOpenMS_1_1SimpleExtender.html#a36b5d54b1a3a55b7cf46576fd849c299">SimpleExtender< PeakType, FeatureType >::moveMzUp_()</a>, <a class="el" href="classOpenMS_1_1SimpleExtender.html#a7f4bbff96a2ea0e3d46711022de26b29">SimpleExtender< PeakType, FeatureType >::moveRtDown_()</a>, and <a class="el" href="classOpenMS_1_1SimpleExtender.html#af79f8c231da6a9d674c28941d313d315">SimpleExtender< PeakType, FeatureType >::moveRtUp_()</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1SimpleExtender.html#a148f3853784fb91146ee0a2c97fbe152">ProbabilityType</a> computePeakPriority_ </td>
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<p>Computes the priority of a peak as function of intensity and distance from seed. </p>
<p>References <a class="el" href="classOpenMS_1_1FeaFiModule.html#a365c5cf67d48519199fe00cb5688d628">FeaFiModule< PeakType, FeatureType >::map_</a>.</p>
<p>Referenced by <a class="el" href="classOpenMS_1_1SimpleExtender.html#a8597c0a5982f48f9a8387e286b0251b0">SimpleExtender< PeakType, FeatureType >::checkNeighbour_()</a>, and <a class="el" href="classOpenMS_1_1SimpleExtender.html#a1139a06b7cf1886d1977e5afcfddfea6">SimpleExtender< PeakType, FeatureType >::extend()</a>.</p>
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<td class="memname">void extend </td>
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<p>return next seed </p>
<p>References <a class="el" href="classOpenMS_1_1Math_1_1AveragePosition.html#aab83fef12a65ca4880219fc70de3aab5">AveragePosition< D >::add()</a>, <a class="el" href="classOpenMS_1_1SimpleExtender.html#ab858156ff4f42ae4048114b536c4d6ca">SimpleExtender< PeakType, FeatureType >::boundary_</a>, <a class="el" href="structOpenMS_1_1IsotopeCluster_1_1ChargedIndexSet.html#a8253a7962ca1c79b71e6af96589b7720">IsotopeCluster::ChargedIndexSet::charge</a>, <a class="el" href="classOpenMS_1_1Math_1_1AveragePosition.html#ac8bb3912a3ce86b15842e79d0b421204">AveragePosition< D >::clear()</a>, <a class="el" href="classOpenMS_1_1SimpleExtender.html#af7842efcd3ecab40cf021f5cae359dbe">SimpleExtender< PeakType, FeatureType >::computePeakPriority_()</a>, <a class="el" href="classOpenMS_1_1FeaFiModule.html#adf68cb378c76b322b2cc4dbb2c145a3e">FeaFiModule< PeakType, FeatureType >::ff_</a>, <a class="el" href="classOpenMS_1_1FeatureFinder.html#a91adbb58dfeb79d2b5d78c1047f406c9">FeatureFinder::getPeakFlag()</a>, <a class="el" href="classOpenMS_1_1FeaFiModule.html#a4698fa90bfbdd5729e0e25c62345ff0d">FeaFiModule< PeakType, FeatureType >::getPeakIntensity()</a>, <a class="el" href="classOpenMS_1_1FeaFiModule.html#a606049d47faacd506705556d333849a2">FeaFiModule< PeakType, FeatureType >::getPeakMz()</a>, <a class="el" href="classOpenMS_1_1FeaFiModule.html#a8e5564d7b686645a7d7d6f5aed8cd494">FeaFiModule< PeakType, FeatureType >::getPeakRt()</a>, <a class="el" href="classOpenMS_1_1SimpleExtender.html#a889c3e7e8b35115eea733b1204872d86">SimpleExtender< PeakType, FeatureType >::intensity_threshold_</a>, <a class="el" href="classOpenMS_1_1SimpleExtender.html#a3ff45f6c20e60f681eb4a4057046365a">SimpleExtender< PeakType, FeatureType >::last_pos_extracted_</a>, <a class="el" href="classOpenMS_1_1SimpleExtender.html#a9c6a1a832b915ac89376cec9dbf009b7">SimpleExtender< PeakType, FeatureType >::moveMzDown_()</a>, <a class="el" href="classOpenMS_1_1SimpleExtender.html#a36b5d54b1a3a55b7cf46576fd849c299">SimpleExtender< PeakType, FeatureType >::moveMzUp_()</a>, <a class="el" href="classOpenMS_1_1SimpleExtender.html#a7f4bbff96a2ea0e3d46711022de26b29">SimpleExtender< PeakType, FeatureType >::moveRtDown_()</a>, <a class="el" href="classOpenMS_1_1SimpleExtender.html#af79f8c231da6a9d674c28941d313d315">SimpleExtender< PeakType, FeatureType >::moveRtUp_()</a>, <a class="el" href="classOpenMS_1_1Peak2D.html#ac2d92631c8f762c7e9afe43f11e1f018a35008b046ec2687e53152082281d0867">Peak2D::MZ</a>, <a class="el" href="group__Conditions.html#ga45a74ea28109e7e1ed992fbd2ee97778">OPENMS_PRECONDITION</a>, <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a28c73e623c63a4fe3bfceb1ae8274f39">DefaultParamHandler::param_</a>, <a class="el" href="classOpenMS_1_1SimpleExtender.html#a9d351425833907a2744bbfa08ef60c3e">SimpleExtender< PeakType, FeatureType >::priorities_</a>, <a class="el" href="classOpenMS_1_1Peak2D.html#ac2d92631c8f762c7e9afe43f11e1f018af388fcb6d444ef59841ef549ca6ee0da">Peak2D::RT</a>, <a class="el" href="classOpenMS_1_1SimpleExtender.html#a5e88ec4351e6e6835be11ef6fd88a800">SimpleExtender< PeakType, FeatureType >::running_avg_</a>, <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#a3f3de3e0d751949b8d0b60ffb302944aa1e780c62cb3fd2edcac39f739bbe6f6c">FeatureFinderDefs::USED</a>, and <a class="el" href="classOpenMS_1_1SimpleExtender.html#a0d642765897747c34debb18095cde304">SimpleExtender< PeakType, FeatureType >::writeDebugFile_()</a>.</p>
<p>Referenced by <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimplest.html#a72fcb26a14f6beb1c3fbace9ab3e7dbb">FeatureFinderAlgorithmSimplest< PeakType, FeatureType >::run()</a>, and <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimple.html#a72fcb26a14f6beb1c3fbace9ab3e7dbb">FeatureFinderAlgorithmSimple< PeakType, FeatureType >::run()</a>.</p>
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<p>Checks if the current peak is too far from the centroid. </p>
<p>References <a class="el" href="classOpenMS_1_1SimpleExtender.html#a57d39ae1e384f0f536b054e012d082d8">SimpleExtender< PeakType, FeatureType >::dist_mz_down_</a>, <a class="el" href="classOpenMS_1_1SimpleExtender.html#a18a547e6c7ecaf916c40c86d2739d876">SimpleExtender< PeakType, FeatureType >::dist_mz_up_</a>, <a class="el" href="classOpenMS_1_1SimpleExtender.html#a6a58dff295c66bfc5fc3ad241aef707b">SimpleExtender< PeakType, FeatureType >::dist_rt_down_</a>, <a class="el" href="classOpenMS_1_1SimpleExtender.html#acd6346d244fe3056de90cd27ab700b79">SimpleExtender< PeakType, FeatureType >::dist_rt_up_</a>, <a class="el" href="classOpenMS_1_1FeaFiModule.html#a606049d47faacd506705556d333849a2">FeaFiModule< PeakType, FeatureType >::getPeakMz()</a>, <a class="el" href="classOpenMS_1_1FeaFiModule.html#a8e5564d7b686645a7d7d6f5aed8cd494">FeaFiModule< PeakType, FeatureType >::getPeakRt()</a>, <a class="el" href="classOpenMS_1_1Math_1_1AveragePosition.html#a7d8aef8a439ca984c2dfb1bc01ce0845">AveragePosition< D >::getPosition()</a>, <a class="el" href="classOpenMS_1_1Peak2D.html#ac2d92631c8f762c7e9afe43f11e1f018a35008b046ec2687e53152082281d0867">Peak2D::MZ</a>, <a class="el" href="group__Conditions.html#ga45a74ea28109e7e1ed992fbd2ee97778">OPENMS_PRECONDITION</a>, <a class="el" href="classOpenMS_1_1Peak2D.html#ac2d92631c8f762c7e9afe43f11e1f018af388fcb6d444ef59841ef549ca6ee0da">Peak2D::RT</a>, and <a class="el" href="classOpenMS_1_1SimpleExtender.html#a5e88ec4351e6e6835be11ef6fd88a800">SimpleExtender< PeakType, FeatureType >::running_avg_</a>.</p>
<p>Referenced by <a class="el" href="classOpenMS_1_1SimpleExtender.html#a9c6a1a832b915ac89376cec9dbf009b7">SimpleExtender< PeakType, FeatureType >::moveMzDown_()</a>, <a class="el" href="classOpenMS_1_1SimpleExtender.html#a36b5d54b1a3a55b7cf46576fd849c299">SimpleExtender< PeakType, FeatureType >::moveMzUp_()</a>, <a class="el" href="classOpenMS_1_1SimpleExtender.html#a7f4bbff96a2ea0e3d46711022de26b29">SimpleExtender< PeakType, FeatureType >::moveRtDown_()</a>, and <a class="el" href="classOpenMS_1_1SimpleExtender.html#af79f8c231da6a9d674c28941d313d315">SimpleExtender< PeakType, FeatureType >::moveRtUp_()</a>.</p>
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<p>Extends the seed into negative m/z direction. </p>
<p>References <a class="el" href="classOpenMS_1_1SimpleExtender.html#a8597c0a5982f48f9a8387e286b0251b0">SimpleExtender< PeakType, FeatureType >::checkNeighbour_()</a>, <a class="el" href="classOpenMS_1_1FeaFiModule.html#a62c6d0208b4fc2bc51e55eea8ea1ce9d">FeaFiModule< PeakType, FeatureType >::getPrevMz()</a>, and <a class="el" href="classOpenMS_1_1SimpleExtender.html#af560e97f4f00d467116a5791bcdf7ca5">SimpleExtender< PeakType, FeatureType >::isTooFarFromCentroid_()</a>.</p>
<p>Referenced by <a class="el" href="classOpenMS_1_1SimpleExtender.html#a1139a06b7cf1886d1977e5afcfddfea6">SimpleExtender< PeakType, FeatureType >::extend()</a>.</p>
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<td class="memname">void moveMzUp_ </td>
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<p>Extends the seed into positive m/z direction. </p>
<p>References <a class="el" href="classOpenMS_1_1SimpleExtender.html#a8597c0a5982f48f9a8387e286b0251b0">SimpleExtender< PeakType, FeatureType >::checkNeighbour_()</a>, <a class="el" href="classOpenMS_1_1FeaFiModule.html#a9f755c03fd9b7a485fec02224cc858d7">FeaFiModule< PeakType, FeatureType >::getNextMz()</a>, and <a class="el" href="classOpenMS_1_1SimpleExtender.html#af560e97f4f00d467116a5791bcdf7ca5">SimpleExtender< PeakType, FeatureType >::isTooFarFromCentroid_()</a>.</p>
<p>Referenced by <a class="el" href="classOpenMS_1_1SimpleExtender.html#a1139a06b7cf1886d1977e5afcfddfea6">SimpleExtender< PeakType, FeatureType >::extend()</a>.</p>
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<p>Extends the seed into negative retention time direction. </p>
<p>References <a class="el" href="classOpenMS_1_1SimpleExtender.html#a8597c0a5982f48f9a8387e286b0251b0">SimpleExtender< PeakType, FeatureType >::checkNeighbour_()</a>, <a class="el" href="classOpenMS_1_1FeaFiModule.html#ad4efb644d8a117edfaf7f0f5a9b34e0a">FeaFiModule< PeakType, FeatureType >::getPrevRt()</a>, and <a class="el" href="classOpenMS_1_1SimpleExtender.html#af560e97f4f00d467116a5791bcdf7ca5">SimpleExtender< PeakType, FeatureType >::isTooFarFromCentroid_()</a>.</p>
<p>Referenced by <a class="el" href="classOpenMS_1_1SimpleExtender.html#a1139a06b7cf1886d1977e5afcfddfea6">SimpleExtender< PeakType, FeatureType >::extend()</a>.</p>
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<td class="memname">void moveRtUp_ </td>
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<td class="paramtype">const <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#aaee0bfd850887fdc58115cead9e9b8b9">IndexPair</a> & </td>
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<p>Extension into positive rt dimension. </p>
<p>References <a class="el" href="classOpenMS_1_1SimpleExtender.html#a8597c0a5982f48f9a8387e286b0251b0">SimpleExtender< PeakType, FeatureType >::checkNeighbour_()</a>, <a class="el" href="classOpenMS_1_1FeaFiModule.html#adf52c00b457571ad74d59a5d6fd12d1a">FeaFiModule< PeakType, FeatureType >::getNextRt()</a>, and <a class="el" href="classOpenMS_1_1SimpleExtender.html#af560e97f4f00d467116a5791bcdf7ca5">SimpleExtender< PeakType, FeatureType >::isTooFarFromCentroid_()</a>.</p>
<p>Referenced by <a class="el" href="classOpenMS_1_1SimpleExtender.html#a1139a06b7cf1886d1977e5afcfddfea6">SimpleExtender< PeakType, FeatureType >::extend()</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1SimpleExtender.html">SimpleExtender</a>& operator= </td>
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<p>Not implemented. </p>
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<td class="memname">virtual void updateMembers_ </td>
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<p>This method is used to update extra member variables at the end of the <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#abc8067511cfc949ae942ea2b08588f81" title="Sets the parameters. ">setParameters()</a> method. </p>
<p>Also call it at the end of the derived classes' copy constructor and assignment operator.</p>
<p>The default implementation is empty. </p>
<p>Reimplemented from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a776f7572fc4f466e9527ca233471920d">DefaultParamHandler</a>.</p>
<p>References <a class="el" href="classOpenMS_1_1SimpleExtender.html#a57d39ae1e384f0f536b054e012d082d8">SimpleExtender< PeakType, FeatureType >::dist_mz_down_</a>, <a class="el" href="classOpenMS_1_1SimpleExtender.html#a18a547e6c7ecaf916c40c86d2739d876">SimpleExtender< PeakType, FeatureType >::dist_mz_up_</a>, <a class="el" href="classOpenMS_1_1SimpleExtender.html#a6a58dff295c66bfc5fc3ad241aef707b">SimpleExtender< PeakType, FeatureType >::dist_rt_down_</a>, <a class="el" href="classOpenMS_1_1SimpleExtender.html#acd6346d244fe3056de90cd27ab700b79">SimpleExtender< PeakType, FeatureType >::dist_rt_up_</a>, <a class="el" href="classOpenMS_1_1Param.html#abd0f5571675ec99e1aa647b39e2a8711">Param::getValue()</a>, <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a28c73e623c63a4fe3bfceb1ae8274f39">DefaultParamHandler::param_</a>, and <a class="el" href="classOpenMS_1_1SimpleExtender.html#a20f835e907d9386f5ba2a89f14c3734c">SimpleExtender< PeakType, FeatureType >::priority_threshold_</a>.</p>
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<td class="memname">void writeDebugFile_ </td>
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<p>write DTA2D debug file for the feature with index <code>nr_feat</code> </p>
<p>References <a class="el" href="classOpenMS_1_1String.html#a9d0fab14e2a7a5970214c943d54da700">String::fillLeft()</a>, <a class="el" href="classOpenMS_1_1FeaFiModule.html#a606049d47faacd506705556d333849a2">FeaFiModule< PeakType, FeatureType >::getPeakMz()</a>, and <a class="el" href="classOpenMS_1_1FeaFiModule.html#a8e5564d7b686645a7d7d6f5aed8cd494">FeaFiModule< PeakType, FeatureType >::getPeakRt()</a>.</p>
<p>Referenced by <a class="el" href="classOpenMS_1_1SimpleExtender.html#a1139a06b7cf1886d1977e5afcfddfea6">SimpleExtender< PeakType, FeatureType >::extend()</a>.</p>
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<h2 class="groupheader">Member Data Documentation</h2>
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<td class="memname">std::priority_queue<<a class="el" href="structOpenMS_1_1SimpleExtender_1_1IndexWithPriority.html">IndexWithPriority</a>, std::vector<<a class="el" href="structOpenMS_1_1SimpleExtender_1_1IndexWithPriority.html">IndexWithPriority</a>>, typename <a class="el" href="structOpenMS_1_1SimpleExtender_1_1IndexWithPriority_1_1PriorityLess.html">IndexWithPriority::PriorityLess</a>> boundary_</td>
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<p>Represents the boundary of a feature. </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1SimpleExtender.html#a8597c0a5982f48f9a8387e286b0251b0">SimpleExtender< PeakType, FeatureType >::checkNeighbour_()</a>, and <a class="el" href="classOpenMS_1_1SimpleExtender.html#a1139a06b7cf1886d1977e5afcfddfea6">SimpleExtender< PeakType, FeatureType >::extend()</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a181486a43da338e31f089df7661f50bb">CoordinateType</a> dist_mz_down_</td>
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<p>Maximum distance to seed in negative m/z. </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1SimpleExtender.html#af560e97f4f00d467116a5791bcdf7ca5">SimpleExtender< PeakType, FeatureType >::isTooFarFromCentroid_()</a>, and <a class="el" href="classOpenMS_1_1SimpleExtender.html#a776f7572fc4f466e9527ca233471920d">SimpleExtender< PeakType, FeatureType >::updateMembers_()</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a181486a43da338e31f089df7661f50bb">CoordinateType</a> dist_mz_up_</td>
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<p>Maximum distance to seed in positive m/z. </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1SimpleExtender.html#af560e97f4f00d467116a5791bcdf7ca5">SimpleExtender< PeakType, FeatureType >::isTooFarFromCentroid_()</a>, and <a class="el" href="classOpenMS_1_1SimpleExtender.html#a776f7572fc4f466e9527ca233471920d">SimpleExtender< PeakType, FeatureType >::updateMembers_()</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a181486a43da338e31f089df7661f50bb">CoordinateType</a> dist_rt_down_</td>
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<p>Maximum distance to seed in negative retention time. </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1SimpleExtender.html#af560e97f4f00d467116a5791bcdf7ca5">SimpleExtender< PeakType, FeatureType >::isTooFarFromCentroid_()</a>, and <a class="el" href="classOpenMS_1_1SimpleExtender.html#a776f7572fc4f466e9527ca233471920d">SimpleExtender< PeakType, FeatureType >::updateMembers_()</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a181486a43da338e31f089df7661f50bb">CoordinateType</a> dist_rt_up_</td>
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<p>Maximum distance to seed in positive retention time. </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1SimpleExtender.html#af560e97f4f00d467116a5791bcdf7ca5">SimpleExtender< PeakType, FeatureType >::isTooFarFromCentroid_()</a>, and <a class="el" href="classOpenMS_1_1SimpleExtender.html#a776f7572fc4f466e9527ca233471920d">SimpleExtender< PeakType, FeatureType >::updateMembers_()</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1FeaFiModule.html#a221361082f641c3fccc58e9bc66aeee1">IntensityType</a> intensity_threshold_</td>
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<p>Mininum intensity of a boundary point. Calculated from 'intensity_factor' and the seed intensity. </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1SimpleExtender.html#a8597c0a5982f48f9a8387e286b0251b0">SimpleExtender< PeakType, FeatureType >::checkNeighbour_()</a>, and <a class="el" href="classOpenMS_1_1SimpleExtender.html#a1139a06b7cf1886d1977e5afcfddfea6">SimpleExtender< PeakType, FeatureType >::extend()</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1DPosition.html">DPosition</a><2> last_pos_extracted_</td>
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<p>Position of last peak extracted from the boundary (used to compute the priority of neighbouring peaks) </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1SimpleExtender.html#a1139a06b7cf1886d1977e5afcfddfea6">SimpleExtender< PeakType, FeatureType >::extend()</a>.</p>
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<td class="memname">std::map<<a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#aaee0bfd850887fdc58115cead9e9b8b9">IndexPair</a>, <a class="el" href="classOpenMS_1_1SimpleExtender.html#a148f3853784fb91146ee0a2c97fbe152">ProbabilityType</a>> priorities_</td>
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<p>Keeps track of peaks already included in the boundary (value is priority of peak) </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1SimpleExtender.html#a8597c0a5982f48f9a8387e286b0251b0">SimpleExtender< PeakType, FeatureType >::checkNeighbour_()</a>, and <a class="el" href="classOpenMS_1_1SimpleExtender.html#a1139a06b7cf1886d1977e5afcfddfea6">SimpleExtender< PeakType, FeatureType >::extend()</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1SimpleExtender.html#a148f3853784fb91146ee0a2c97fbe152">ProbabilityType</a> priority_threshold_</td>
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<p>Minium priority for points in the feature region (priority is function of intensity and distance to seed) </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1SimpleExtender.html#a8597c0a5982f48f9a8387e286b0251b0">SimpleExtender< PeakType, FeatureType >::checkNeighbour_()</a>, and <a class="el" href="classOpenMS_1_1SimpleExtender.html#a776f7572fc4f466e9527ca233471920d">SimpleExtender< PeakType, FeatureType >::updateMembers_()</a>.</p>
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<td class="memname"><a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#af01a99958d0b18999737158daf8820ac">ChargedIndexSet</a> region_</td>
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<p>charged index set </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1Math_1_1AveragePosition.html">Math::AveragePosition</a><2> running_avg_</td>
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<p>keeps an running average of the peak coordinates weighted by the intensities </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1SimpleExtender.html#a1139a06b7cf1886d1977e5afcfddfea6">SimpleExtender< PeakType, FeatureType >::extend()</a>, and <a class="el" href="classOpenMS_1_1SimpleExtender.html#af560e97f4f00d467116a5791bcdf7ca5">SimpleExtender< PeakType, FeatureType >::isTooFarFromCentroid_()</a>.</p>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:34 using doxygen 1.8.5</font></TD>
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