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<HTML>
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<TITLE>SpectrumAccessOpenMS Class Reference</TITLE>
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<li class="navelem"><a class="el" href="namespaceOpenMS.html">OpenMS</a></li><li class="navelem"><a class="el" href="classOpenMS_1_1SpectrumAccessOpenMS.html">SpectrumAccessOpenMS</a></li> </ul>
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<a href="#pub-types">Public Types</a> |
<a href="#pub-methods">Public Member Functions</a> |
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<div class="title">SpectrumAccessOpenMS Class Reference</div> </div>
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<div class="contents">
<p>An implementation of the OpenSWATH Spectrum Access interface using <a class="el" href="namespaceOpenMS.html" title="Main OpenMS namespace. ">OpenMS</a>.
<a href="classOpenMS_1_1SpectrumAccessOpenMS.html#details">More...</a></p>
<p><code>#include <<a class="el" href="SpectrumAccessOpenMS_8h_source.html">OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMS.h</a>></code></p>
<div class="dynheader">
Inheritance diagram for SpectrumAccessOpenMS:</div>
<div class="dyncontent">
<div class="center">
<img src="classOpenMS_1_1SpectrumAccessOpenMS.png" usemap="#SpectrumAccessOpenMS_map" alt=""/>
<map id="SpectrumAccessOpenMS_map" name="SpectrumAccessOpenMS_map">
<area href="classOpenSwath_1_1ISpectrumAccess.html" title="The interface of a mass spectrometry experiment. " alt="ISpectrumAccess" shape="rect" coords="0,0,157,24"/>
</map>
</div></div>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-types"></a>
Public Types</h2></td></tr>
<tr class="memitem:a6fd303e5118183ff42dffd46c7e994a0"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1MSExperiment.html">OpenMS::MSExperiment</a><br class="typebreak"/>
< <a class="el" href="classOpenMS_1_1Peak1D.html">Peak1D</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumAccessOpenMS.html#a6fd303e5118183ff42dffd46c7e994a0">MSExperimentType</a></td></tr>
<tr class="separator:a6fd303e5118183ff42dffd46c7e994a0"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a119395bec889570196b078b4f9a9a0ee"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1MSSpectrum.html">OpenMS::MSSpectrum</a><br class="typebreak"/>
< <a class="el" href="classOpenMS_1_1Peak1D.html">Peak1D</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumAccessOpenMS.html#a119395bec889570196b078b4f9a9a0ee">MSSpectrumType</a></td></tr>
<tr class="separator:a119395bec889570196b078b4f9a9a0ee"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ace3f430d85b387392ae1bfb5b32704d2"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1MSChromatogram.html">OpenMS::MSChromatogram</a><br class="typebreak"/>
< <a class="el" href="classOpenMS_1_1ChromatogramPeak.html">ChromatogramPeak</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumAccessOpenMS.html#ace3f430d85b387392ae1bfb5b32704d2">MSChromatogramType</a></td></tr>
<tr class="separator:ace3f430d85b387392ae1bfb5b32704d2"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:af1e2ba9776318fb07b842a0b44ece7a5"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumAccessOpenMS.html#af1e2ba9776318fb07b842a0b44ece7a5">SpectrumAccessOpenMS</a> (<a class="el" href="classOpenMS_1_1SpectrumAccessOpenMS.html#a6fd303e5118183ff42dffd46c7e994a0">MSExperimentType</a> &ms_experiment)</td></tr>
<tr class="separator:af1e2ba9776318fb07b842a0b44ece7a5"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:afe9f844f50a394c92b887ba68233d1e9"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumAccessOpenMS.html#afe9f844f50a394c92b887ba68233d1e9">~SpectrumAccessOpenMS</a> ()</td></tr>
<tr class="separator:afe9f844f50a394c92b887ba68233d1e9"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:abfce0c97f3a8ece519229cf1672c990a"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespaceOpenSwath.html#a93e7d6a13eb66ccae0357dbae6f33523">OpenSwath::SpectrumPtr</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumAccessOpenMS.html#abfce0c97f3a8ece519229cf1672c990a">getSpectrumById</a> (int id) const </td></tr>
<tr class="memdesc:abfce0c97f3a8ece519229cf1672c990a"><td class="mdescLeft"> </td><td class="mdescRight">Return a pointer to a spectrum at the given id. <a href="#abfce0c97f3a8ece519229cf1672c990a">More...</a><br/></td></tr>
<tr class="separator:abfce0c97f3a8ece519229cf1672c990a"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:acc0c82b4e38aef539235e809e4f72411"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structOpenSwath_1_1SpectrumMeta.html">OpenSwath::SpectrumMeta</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumAccessOpenMS.html#acc0c82b4e38aef539235e809e4f72411">getSpectrumMetaById</a> (int id) const </td></tr>
<tr class="memdesc:acc0c82b4e38aef539235e809e4f72411"><td class="mdescLeft"> </td><td class="mdescRight">Returns the meta information for a spectrum. <a href="#acc0c82b4e38aef539235e809e4f72411">More...</a><br/></td></tr>
<tr class="separator:acc0c82b4e38aef539235e809e4f72411"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a7d1991ce2ca5e788678d51fae02d758f"><td class="memItemLeft" align="right" valign="top">std::vector< std::size_t > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumAccessOpenMS.html#a7d1991ce2ca5e788678d51fae02d758f">getSpectraByRT</a> (<a class="el" href="classdouble.html">double</a> RT, <a class="el" href="classdouble.html">double</a> deltaRT) const </td></tr>
<tr class="memdesc:a7d1991ce2ca5e788678d51fae02d758f"><td class="mdescLeft"> </td><td class="mdescRight">Return a vector of ids of spectra that are within RT +/- deltaRT. <a href="#a7d1991ce2ca5e788678d51fae02d758f">More...</a><br/></td></tr>
<tr class="separator:a7d1991ce2ca5e788678d51fae02d758f"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aaac06092b681ebacf1f4abe42c21d640"><td class="memItemLeft" align="right" valign="top">size_t </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumAccessOpenMS.html#aaac06092b681ebacf1f4abe42c21d640">getNrSpectra</a> () const </td></tr>
<tr class="memdesc:aaac06092b681ebacf1f4abe42c21d640"><td class="mdescLeft"> </td><td class="mdescRight">Returns the number of spectra available. <a href="#aaac06092b681ebacf1f4abe42c21d640">More...</a><br/></td></tr>
<tr class="separator:aaac06092b681ebacf1f4abe42c21d640"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a8631ce2cb0bfb22d0929a486e65306d1"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1SpectrumSettings.html">SpectrumSettings</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumAccessOpenMS.html#a8631ce2cb0bfb22d0929a486e65306d1">getSpectraMetaInfo</a> (int id) const </td></tr>
<tr class="separator:a8631ce2cb0bfb22d0929a486e65306d1"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a40ec11364d1f3718dc02f7042715a64f"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespaceOpenSwath.html#a159d76e81a041373752ffca5f953a5ca">OpenSwath::ChromatogramPtr</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumAccessOpenMS.html#a40ec11364d1f3718dc02f7042715a64f">getChromatogramById</a> (int id) const </td></tr>
<tr class="memdesc:a40ec11364d1f3718dc02f7042715a64f"><td class="mdescLeft"> </td><td class="mdescRight">Return a pointer to a chromatogram at the given id. <a href="#a40ec11364d1f3718dc02f7042715a64f">More...</a><br/></td></tr>
<tr class="separator:a40ec11364d1f3718dc02f7042715a64f"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ac425980db1278a0fb721063691e74953"><td class="memItemLeft" align="right" valign="top">size_t </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumAccessOpenMS.html#ac425980db1278a0fb721063691e74953">getNrChromatograms</a> () const </td></tr>
<tr class="memdesc:ac425980db1278a0fb721063691e74953"><td class="mdescLeft"> </td><td class="mdescRight">Returns the number of chromatograms available. <a href="#ac425980db1278a0fb721063691e74953">More...</a><br/></td></tr>
<tr class="separator:ac425980db1278a0fb721063691e74953"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a216e6be7c7432a4acd4437bf44ef2d09"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1ChromatogramSettings.html">ChromatogramSettings</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumAccessOpenMS.html#a216e6be7c7432a4acd4437bf44ef2d09">getChromatogramMetaInfo</a> (int id) const </td></tr>
<tr class="separator:a216e6be7c7432a4acd4437bf44ef2d09"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a65c067f2f16da15a2d40efb0252c4fe7"><td class="memItemLeft" align="right" valign="top">std::string </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumAccessOpenMS.html#a65c067f2f16da15a2d40efb0252c4fe7">getChromatogramNativeID</a> (int id) const </td></tr>
<tr class="memdesc:a65c067f2f16da15a2d40efb0252c4fe7"><td class="mdescLeft"> </td><td class="mdescRight">Returns the native id of the chromatogram at the given id. <a href="#a65c067f2f16da15a2d40efb0252c4fe7">More...</a><br/></td></tr>
<tr class="separator:a65c067f2f16da15a2d40efb0252c4fe7"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_methods_classOpenSwath_1_1ISpectrumAccess"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classOpenSwath_1_1ISpectrumAccess')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classOpenSwath_1_1ISpectrumAccess.html">ISpectrumAccess</a></td></tr>
<tr class="memitem:a459e69bc19992a1d5e3338afe09d01bb inherit pub_methods_classOpenSwath_1_1ISpectrumAccess"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenSwath_1_1ISpectrumAccess.html#a459e69bc19992a1d5e3338afe09d01bb">~ISpectrumAccess</a> ()</td></tr>
<tr class="separator:a459e69bc19992a1d5e3338afe09d01bb inherit pub_methods_classOpenSwath_1_1ISpectrumAccess"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-attribs"></a>
Private Attributes</h2></td></tr>
<tr class="memitem:a65bfb95ae6d30c61f2d3c59c84c14266"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1SpectrumAccessOpenMS.html#a6fd303e5118183ff42dffd46c7e994a0">MSExperimentType</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumAccessOpenMS.html#a65bfb95ae6d30c61f2d3c59c84c14266">ms_experiment_</a></td></tr>
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>An implementation of the OpenSWATH Spectrum Access interface using <a class="el" href="namespaceOpenMS.html" title="Main OpenMS namespace. ">OpenMS</a>. </p>
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<td class="memname">typedef <a class="el" href="classOpenMS_1_1MSChromatogram.html">OpenMS::MSChromatogram</a><<a class="el" href="classOpenMS_1_1ChromatogramPeak.html">ChromatogramPeak</a>> <a class="el" href="classOpenMS_1_1SpectrumAccessOpenMS.html#ace3f430d85b387392ae1bfb5b32704d2">MSChromatogramType</a></td>
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<td class="memname">typedef <a class="el" href="classOpenMS_1_1MSExperiment.html">OpenMS::MSExperiment</a><<a class="el" href="classOpenMS_1_1Peak1D.html">Peak1D</a>> <a class="el" href="classOpenMS_1_1SpectrumAccessOpenMS.html#a6fd303e5118183ff42dffd46c7e994a0">MSExperimentType</a></td>
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<td class="memname">typedef <a class="el" href="classOpenMS_1_1MSSpectrum.html">OpenMS::MSSpectrum</a><<a class="el" href="classOpenMS_1_1Peak1D.html">Peak1D</a>> <a class="el" href="classOpenMS_1_1SpectrumAccessOpenMS.html#a119395bec889570196b078b4f9a9a0ee">MSSpectrumType</a></td>
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<h2 class="groupheader">Constructor & Destructor Documentation</h2>
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<td class="memname"><a class="el" href="classOpenMS_1_1SpectrumAccessOpenMS.html">SpectrumAccessOpenMS</a> </td>
<td>(</td>
<td class="paramtype"><a class="el" href="classOpenMS_1_1SpectrumAccessOpenMS.html#a6fd303e5118183ff42dffd46c7e994a0">MSExperimentType</a> & </td>
<td class="paramname"><em>ms_experiment</em></td><td>)</td>
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<td class="memname">~<a class="el" href="classOpenMS_1_1SpectrumAccessOpenMS.html">SpectrumAccessOpenMS</a> </td>
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<h2 class="groupheader">Member Function Documentation</h2>
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<td class="memname"><a class="el" href="namespaceOpenSwath.html#a159d76e81a041373752ffca5f953a5ca">OpenSwath::ChromatogramPtr</a> getChromatogramById </td>
<td>(</td>
<td class="paramtype">int </td>
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<p>Return a pointer to a chromatogram at the given id. </p>
<p>Implements <a class="el" href="classOpenSwath_1_1ISpectrumAccess.html#ab88240f54d3d6cf1ecd1b7149afa714c">ISpectrumAccess</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1ChromatogramSettings.html">ChromatogramSettings</a> getChromatogramMetaInfo </td>
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<td class="memname">std::string getChromatogramNativeID </td>
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<p>Returns the native id of the chromatogram at the given id. </p>
<p>Implements <a class="el" href="classOpenSwath_1_1ISpectrumAccess.html#ab58436a9f00cf3096c2eebcb277c6719">ISpectrumAccess</a>.</p>
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<td class="memname">size_t getNrChromatograms </td>
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<p>Returns the number of chromatograms available. </p>
<p>Implements <a class="el" href="classOpenSwath_1_1ISpectrumAccess.html#a73e3f8bd80ee400f43d0f00abe4c60e7">ISpectrumAccess</a>.</p>
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<td class="memname">size_t getNrSpectra </td>
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<p>Returns the number of spectra available. </p>
<p>Implements <a class="el" href="classOpenSwath_1_1ISpectrumAccess.html#a7f997a49c31ce791fc9dc6b09d1e88c6">ISpectrumAccess</a>.</p>
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<td class="memname">std::vector<std::size_t> getSpectraByRT </td>
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<p>Return a vector of ids of spectra that are within RT +/- deltaRT. </p>
<p>Implements <a class="el" href="classOpenSwath_1_1ISpectrumAccess.html#a3be216755858978cd70df7625aa2ce8d">ISpectrumAccess</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1SpectrumSettings.html">SpectrumSettings</a> getSpectraMetaInfo </td>
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<td class="memname"><a class="el" href="namespaceOpenSwath.html#a93e7d6a13eb66ccae0357dbae6f33523">OpenSwath::SpectrumPtr</a> getSpectrumById </td>
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<p>Return a pointer to a spectrum at the given id. </p>
<p>Implements <a class="el" href="classOpenSwath_1_1ISpectrumAccess.html#acdfeffeb140392f5d912145f911fc863">ISpectrumAccess</a>.</p>
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<td class="memname"><a class="el" href="structOpenSwath_1_1SpectrumMeta.html">OpenSwath::SpectrumMeta</a> getSpectrumMetaById </td>
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<p>Returns the meta information for a spectrum. </p>
<p>Implements <a class="el" href="classOpenSwath_1_1ISpectrumAccess.html#a66e9086cc156dff70fa7869307fd07ad">ISpectrumAccess</a>.</p>
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<h2 class="groupheader">Member Data Documentation</h2>
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<td class="memname"><a class="el" href="classOpenMS_1_1SpectrumAccessOpenMS.html#a6fd303e5118183ff42dffd46c7e994a0">MSExperimentType</a>* ms_experiment_</td>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:26 using doxygen 1.8.5</font></TD>
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