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<HTML>
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<TITLE>SpectrumCheapDPCorr Class Reference</TITLE>
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<li class="navelem"><a class="el" href="namespaceOpenMS.html">OpenMS</a></li><li class="navelem"><a class="el" href="classOpenMS_1_1SpectrumCheapDPCorr.html">SpectrumCheapDPCorr</a></li> </ul>
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<div class="summary">
<a href="#pri-methods">Private Member Functions</a> |
<a href="#pri-attribs">Private Attributes</a> |
<a href="#pri-static-attribs">Static Private Attributes</a> |
<a href="classOpenMS_1_1SpectrumCheapDPCorr-members.html">List of all members</a> </div>
<div class="headertitle">
<div class="title">SpectrumCheapDPCorr Class Reference<div class="ingroups"><a class="el" href="group__SpectraComparison.html">Spectrum Comparison</a></div></div> </div>
</div><!--header-->
<div class="contents">
<p><a class="el" href="classOpenMS_1_1SpectrumCheapDPCorr.html" title="SpectrumCheapDPCorr calculates an optimal alignment on stick spectra. ">SpectrumCheapDPCorr</a> calculates an optimal alignment on stick spectra.
<a href="classOpenMS_1_1SpectrumCheapDPCorr.html#details">More...</a></p>
<p><code>#include <<a class="el" href="SpectrumCheapDPCorr_8h_source.html">OpenMS/COMPARISON/SPECTRA/SpectrumCheapDPCorr.h</a>></code></p>
<div class="dynheader">
Inheritance diagram for SpectrumCheapDPCorr:</div>
<div class="dyncontent">
<div class="center">
<img src="classOpenMS_1_1SpectrumCheapDPCorr.png" usemap="#SpectrumCheapDPCorr_map" alt=""/>
<map id="SpectrumCheapDPCorr_map" name="SpectrumCheapDPCorr_map">
<area href="classOpenMS_1_1PeakSpectrumCompareFunctor.html" title="Base class for compare functors of spectra, that return a similiarity value for two spectra..." alt="PeakSpectrumCompareFunctor" shape="rect" coords="0,56,188,80"/>
<area href="classOpenMS_1_1DefaultParamHandler.html" title="A base class for all classes handling default parameters. " alt="DefaultParamHandler" shape="rect" coords="0,0,188,24"/>
</map>
</div></div>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr><td colspan="2"><div class="groupHeader"></div></td></tr>
<tr class="memitem:adc285709bcd2a74628cae1bf1cb4f512"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumCheapDPCorr.html#adc285709bcd2a74628cae1bf1cb4f512">SpectrumCheapDPCorr</a> ()</td></tr>
<tr class="memdesc:adc285709bcd2a74628cae1bf1cb4f512"><td class="mdescLeft"> </td><td class="mdescRight">default constructor <a href="#adc285709bcd2a74628cae1bf1cb4f512">More...</a><br/></td></tr>
<tr class="separator:adc285709bcd2a74628cae1bf1cb4f512"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aa981e6d657d4da00b69d72e9ba705081"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumCheapDPCorr.html#aa981e6d657d4da00b69d72e9ba705081">SpectrumCheapDPCorr</a> (const <a class="el" href="classOpenMS_1_1SpectrumCheapDPCorr.html">SpectrumCheapDPCorr</a> &source)</td></tr>
<tr class="memdesc:aa981e6d657d4da00b69d72e9ba705081"><td class="mdescLeft"> </td><td class="mdescRight">copy constructor <a href="#aa981e6d657d4da00b69d72e9ba705081">More...</a><br/></td></tr>
<tr class="separator:aa981e6d657d4da00b69d72e9ba705081"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a1e996e0e0fbce6d7691528071c9c7e95"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumCheapDPCorr.html#a1e996e0e0fbce6d7691528071c9c7e95">~SpectrumCheapDPCorr</a> ()</td></tr>
<tr class="memdesc:a1e996e0e0fbce6d7691528071c9c7e95"><td class="mdescLeft"> </td><td class="mdescRight">destructor <a href="#a1e996e0e0fbce6d7691528071c9c7e95">More...</a><br/></td></tr>
<tr class="separator:a1e996e0e0fbce6d7691528071c9c7e95"><td class="memSeparator" colspan="2"> </td></tr>
<tr><td colspan="2"><div class="groupHeader"></div></td></tr>
<tr class="memitem:ae44341cd376a84087d17275ae534830c"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1SpectrumCheapDPCorr.html">SpectrumCheapDPCorr</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumCheapDPCorr.html#ae44341cd376a84087d17275ae534830c">operator=</a> (const <a class="el" href="classOpenMS_1_1SpectrumCheapDPCorr.html">SpectrumCheapDPCorr</a> &source)</td></tr>
<tr class="memdesc:ae44341cd376a84087d17275ae534830c"><td class="mdescLeft"> </td><td class="mdescRight">assignment operator <a href="#ae44341cd376a84087d17275ae534830c">More...</a><br/></td></tr>
<tr class="separator:ae44341cd376a84087d17275ae534830c"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:afa50c76c75815369839edab5343551b9"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classdouble.html">double</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumCheapDPCorr.html#afa50c76c75815369839edab5343551b9">operator()</a> (const <a class="el" href="group__Kernel.html#ga3ba16951dc40c7a6c7457f3452e096ab">PeakSpectrum</a> &a, const <a class="el" href="group__Kernel.html#ga3ba16951dc40c7a6c7457f3452e096ab">PeakSpectrum</a> &b) const </td></tr>
<tr class="memdesc:afa50c76c75815369839edab5343551b9"><td class="mdescLeft"> </td><td class="mdescRight">function call operator, calculates the similarity <a href="#afa50c76c75815369839edab5343551b9">More...</a><br/></td></tr>
<tr class="separator:afa50c76c75815369839edab5343551b9"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a5f1c63bb29edd603f859f1eb5af529bf"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classdouble.html">double</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumCheapDPCorr.html#a5f1c63bb29edd603f859f1eb5af529bf">operator()</a> (const <a class="el" href="group__Kernel.html#ga3ba16951dc40c7a6c7457f3452e096ab">PeakSpectrum</a> &a) const </td></tr>
<tr class="memdesc:a5f1c63bb29edd603f859f1eb5af529bf"><td class="mdescLeft"> </td><td class="mdescRight">calculates self similarity <a href="#a5f1c63bb29edd603f859f1eb5af529bf">More...</a><br/></td></tr>
<tr class="separator:a5f1c63bb29edd603f859f1eb5af529bf"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_methods_classOpenMS_1_1PeakSpectrumCompareFunctor"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classOpenMS_1_1PeakSpectrumCompareFunctor')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classOpenMS_1_1PeakSpectrumCompareFunctor.html">PeakSpectrumCompareFunctor</a></td></tr>
<tr class="memitem:aa94067fde55bc9222f8743b27e32b3f1 inherit pub_methods_classOpenMS_1_1PeakSpectrumCompareFunctor"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeakSpectrumCompareFunctor.html#aa94067fde55bc9222f8743b27e32b3f1">PeakSpectrumCompareFunctor</a> ()</td></tr>
<tr class="memdesc:aa94067fde55bc9222f8743b27e32b3f1 inherit pub_methods_classOpenMS_1_1PeakSpectrumCompareFunctor"><td class="mdescLeft"> </td><td class="mdescRight">default constructor <a href="#aa94067fde55bc9222f8743b27e32b3f1">More...</a><br/></td></tr>
<tr class="separator:aa94067fde55bc9222f8743b27e32b3f1 inherit pub_methods_classOpenMS_1_1PeakSpectrumCompareFunctor"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a3d6a3451fd30c5edc780cee37cef38c9 inherit pub_methods_classOpenMS_1_1PeakSpectrumCompareFunctor"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeakSpectrumCompareFunctor.html#a3d6a3451fd30c5edc780cee37cef38c9">PeakSpectrumCompareFunctor</a> (const <a class="el" href="classOpenMS_1_1PeakSpectrumCompareFunctor.html">PeakSpectrumCompareFunctor</a> &source)</td></tr>
<tr class="memdesc:a3d6a3451fd30c5edc780cee37cef38c9 inherit pub_methods_classOpenMS_1_1PeakSpectrumCompareFunctor"><td class="mdescLeft"> </td><td class="mdescRight">copy constructor <a href="#a3d6a3451fd30c5edc780cee37cef38c9">More...</a><br/></td></tr>
<tr class="separator:a3d6a3451fd30c5edc780cee37cef38c9 inherit pub_methods_classOpenMS_1_1PeakSpectrumCompareFunctor"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a695d3eee5bc48c6168e9df8c81e8e1f3 inherit pub_methods_classOpenMS_1_1PeakSpectrumCompareFunctor"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeakSpectrumCompareFunctor.html#a695d3eee5bc48c6168e9df8c81e8e1f3">~PeakSpectrumCompareFunctor</a> ()</td></tr>
<tr class="memdesc:a695d3eee5bc48c6168e9df8c81e8e1f3 inherit pub_methods_classOpenMS_1_1PeakSpectrumCompareFunctor"><td class="mdescLeft"> </td><td class="mdescRight">destructor <a href="#a695d3eee5bc48c6168e9df8c81e8e1f3">More...</a><br/></td></tr>
<tr class="separator:a695d3eee5bc48c6168e9df8c81e8e1f3 inherit pub_methods_classOpenMS_1_1PeakSpectrumCompareFunctor"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a0e88bb1b164535dcfbc1eb5d872af850 inherit pub_methods_classOpenMS_1_1PeakSpectrumCompareFunctor"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1PeakSpectrumCompareFunctor.html">PeakSpectrumCompareFunctor</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeakSpectrumCompareFunctor.html#a0e88bb1b164535dcfbc1eb5d872af850">operator=</a> (const <a class="el" href="classOpenMS_1_1PeakSpectrumCompareFunctor.html">PeakSpectrumCompareFunctor</a> &source)</td></tr>
<tr class="memdesc:a0e88bb1b164535dcfbc1eb5d872af850 inherit pub_methods_classOpenMS_1_1PeakSpectrumCompareFunctor"><td class="mdescLeft"> </td><td class="mdescRight">assignment operator <a href="#a0e88bb1b164535dcfbc1eb5d872af850">More...</a><br/></td></tr>
<tr class="separator:a0e88bb1b164535dcfbc1eb5d872af850 inherit pub_methods_classOpenMS_1_1PeakSpectrumCompareFunctor"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_methods_classOpenMS_1_1DefaultParamHandler"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classOpenMS_1_1DefaultParamHandler')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td></tr>
<tr class="memitem:afb6802fda161cb0c1a4a05597f94aecc inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#afb6802fda161cb0c1a4a05597f94aecc">DefaultParamHandler</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &name)</td></tr>
<tr class="memdesc:afb6802fda161cb0c1a4a05597f94aecc inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Constructor with name that is displayed in error messages. <a href="#afb6802fda161cb0c1a4a05597f94aecc">More...</a><br/></td></tr>
<tr class="separator:afb6802fda161cb0c1a4a05597f94aecc inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a954da7eef3cfddda446574eaadd20abb inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a954da7eef3cfddda446574eaadd20abb">DefaultParamHandler</a> (const <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &rhs)</td></tr>
<tr class="memdesc:a954da7eef3cfddda446574eaadd20abb inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Copy constructor. <a href="#a954da7eef3cfddda446574eaadd20abb">More...</a><br/></td></tr>
<tr class="separator:a954da7eef3cfddda446574eaadd20abb inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a11e9d6dd34fe8860874aa8abe0ec121b inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a11e9d6dd34fe8860874aa8abe0ec121b">~DefaultParamHandler</a> ()</td></tr>
<tr class="memdesc:a11e9d6dd34fe8860874aa8abe0ec121b inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Destructor. <a href="#a11e9d6dd34fe8860874aa8abe0ec121b">More...</a><br/></td></tr>
<tr class="separator:a11e9d6dd34fe8860874aa8abe0ec121b inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae6b6d68036a573a44f6609460ba2dfb6 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ae6b6d68036a573a44f6609460ba2dfb6">operator=</a> (const <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &rhs)</td></tr>
<tr class="memdesc:ae6b6d68036a573a44f6609460ba2dfb6 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Assignment operator. <a href="#ae6b6d68036a573a44f6609460ba2dfb6">More...</a><br/></td></tr>
<tr class="separator:ae6b6d68036a573a44f6609460ba2dfb6 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ac435f2dd4d9f9328db83af97129a8d7e inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ac435f2dd4d9f9328db83af97129a8d7e">operator==</a> (const <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &rhs) const </td></tr>
<tr class="memdesc:ac435f2dd4d9f9328db83af97129a8d7e inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Equality operator. <a href="#ac435f2dd4d9f9328db83af97129a8d7e">More...</a><br/></td></tr>
<tr class="separator:ac435f2dd4d9f9328db83af97129a8d7e inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:abc8067511cfc949ae942ea2b08588f81 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#abc8067511cfc949ae942ea2b08588f81">setParameters</a> (const <a class="el" href="classOpenMS_1_1Param.html">Param</a> &param)</td></tr>
<tr class="memdesc:abc8067511cfc949ae942ea2b08588f81 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Sets the parameters. <a href="#abc8067511cfc949ae942ea2b08588f81">More...</a><br/></td></tr>
<tr class="separator:abc8067511cfc949ae942ea2b08588f81 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a7f6aab5a7dfbdd1c062a4352a29361f3 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1Param.html">Param</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a7f6aab5a7dfbdd1c062a4352a29361f3">getParameters</a> () const </td></tr>
<tr class="memdesc:a7f6aab5a7dfbdd1c062a4352a29361f3 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Non-mutable access to the parameters. <a href="#a7f6aab5a7dfbdd1c062a4352a29361f3">More...</a><br/></td></tr>
<tr class="separator:a7f6aab5a7dfbdd1c062a4352a29361f3 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a02f02fa9832ca3e8d47c575a39803a2a inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1Param.html">Param</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a02f02fa9832ca3e8d47c575a39803a2a">getDefaults</a> () const </td></tr>
<tr class="memdesc:a02f02fa9832ca3e8d47c575a39803a2a inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Non-mutable access to the default parameters. <a href="#a02f02fa9832ca3e8d47c575a39803a2a">More...</a><br/></td></tr>
<tr class="separator:a02f02fa9832ca3e8d47c575a39803a2a inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aaee0f2845288173de9f6ad47e6ad31d5 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1String.html">String</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#aaee0f2845288173de9f6ad47e6ad31d5">getName</a> () const </td></tr>
<tr class="memdesc:aaee0f2845288173de9f6ad47e6ad31d5 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Non-mutable access to the name. <a href="#aaee0f2845288173de9f6ad47e6ad31d5">More...</a><br/></td></tr>
<tr class="separator:aaee0f2845288173de9f6ad47e6ad31d5 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a77d37f2e1c12e8bd33ea0e660a89e927 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a77d37f2e1c12e8bd33ea0e660a89e927">setName</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &name)</td></tr>
<tr class="memdesc:a77d37f2e1c12e8bd33ea0e660a89e927 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Mutable access to the name. <a href="#a77d37f2e1c12e8bd33ea0e660a89e927">More...</a><br/></td></tr>
<tr class="separator:a77d37f2e1c12e8bd33ea0e660a89e927 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a768d4a2093627a2f34728656a9721bdf inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const std::vector< <a class="el" href="classOpenMS_1_1String.html">String</a> > & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a768d4a2093627a2f34728656a9721bdf">getSubsections</a> () const </td></tr>
<tr class="memdesc:a768d4a2093627a2f34728656a9721bdf inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Non-mutable access to the registered subsections. <a href="#a768d4a2093627a2f34728656a9721bdf">More...</a><br/></td></tr>
<tr class="separator:a768d4a2093627a2f34728656a9721bdf inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-methods"></a>
Private Member Functions</h2></td></tr>
<tr class="memitem:a0aa2cd152b66ece51b74919bff946738"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classdouble.html">double</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumCheapDPCorr.html#a0aa2cd152b66ece51b74919bff946738">dynprog_</a> (const <a class="el" href="group__Kernel.html#ga3ba16951dc40c7a6c7457f3452e096ab">PeakSpectrum</a> &, const <a class="el" href="group__Kernel.html#ga3ba16951dc40c7a6c7457f3452e096ab">PeakSpectrum</a> &, int, int, int, int) const </td></tr>
<tr class="memdesc:a0aa2cd152b66ece51b74919bff946738"><td class="mdescLeft"> </td><td class="mdescRight">O(n^2) dynamical programming. <a href="#a0aa2cd152b66ece51b74919bff946738">More...</a><br/></td></tr>
<tr class="separator:a0aa2cd152b66ece51b74919bff946738"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae65a624665676d61838d8cfd21a532a5"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classdouble.html">double</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumCheapDPCorr.html#ae65a624665676d61838d8cfd21a532a5">comparepeaks_</a> (<a class="el" href="classdouble.html">double</a> posa, <a class="el" href="classdouble.html">double</a> posb, <a class="el" href="classdouble.html">double</a> inta, <a class="el" href="classdouble.html">double</a> intb) const </td></tr>
<tr class="memdesc:ae65a624665676d61838d8cfd21a532a5"><td class="mdescLeft"> </td><td class="mdescRight">similarity of two peaks <a href="#ae65a624665676d61838d8cfd21a532a5">More...</a><br/></td></tr>
<tr class="separator:ae65a624665676d61838d8cfd21a532a5"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-attribs"></a>
Private Attributes</h2></td></tr>
<tr class="memitem:afcb60b39f48f35144b80fb0b87d88f78"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Kernel.html#ga3ba16951dc40c7a6c7457f3452e096ab">PeakSpectrum</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumCheapDPCorr.html#afcb60b39f48f35144b80fb0b87d88f78">lastconsensus_</a></td></tr>
<tr class="memdesc:afcb60b39f48f35144b80fb0b87d88f78"><td class="mdescLeft"> </td><td class="mdescRight">consensus spectrum of the last comparison <a href="#afcb60b39f48f35144b80fb0b87d88f78">More...</a><br/></td></tr>
<tr class="separator:afcb60b39f48f35144b80fb0b87d88f78"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ab1467ee42ecd2b0581d1cc7016d94e6b"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumCheapDPCorr.html#ab1467ee42ecd2b0581d1cc7016d94e6b">keeppeaks_</a></td></tr>
<tr class="memdesc:ab1467ee42ecd2b0581d1cc7016d94e6b"><td class="mdescLeft"> </td><td class="mdescRight">should peaks with no alignment partner be kept in the consensus? <a href="#ab1467ee42ecd2b0581d1cc7016d94e6b">More...</a><br/></td></tr>
<tr class="separator:ab1467ee42ecd2b0581d1cc7016d94e6b"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ad6424b04984a99e9b594ff40b8aafbed"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classdouble.html">double</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumCheapDPCorr.html#ad6424b04984a99e9b594ff40b8aafbed">factor_</a></td></tr>
<tr class="memdesc:ad6424b04984a99e9b594ff40b8aafbed"><td class="mdescLeft"> </td><td class="mdescRight">weighting factor for the next consensus spectrum <a href="#ad6424b04984a99e9b594ff40b8aafbed">More...</a><br/></td></tr>
<tr class="separator:ad6424b04984a99e9b594ff40b8aafbed"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a3ff431636c90263d0a88198b78acaa62"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Map.html">Map</a>< <a class="el" href="group__Concept.html#gaba0996d26f7be2572973245b51852757">UInt</a>, <a class="el" href="group__Concept.html#gaba0996d26f7be2572973245b51852757">UInt</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumCheapDPCorr.html#a3ff431636c90263d0a88198b78acaa62">peak_map_</a></td></tr>
<tr class="memdesc:a3ff431636c90263d0a88198b78acaa62"><td class="mdescLeft"> </td><td class="mdescRight">last peak map <a href="#a3ff431636c90263d0a88198b78acaa62">More...</a><br/></td></tr>
<tr class="separator:a3ff431636c90263d0a88198b78acaa62"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-static-attribs"></a>
Static Private Attributes</h2></td></tr>
<tr class="memitem:a5aba29468d9da4c80f8ad6d9a8611747"><td class="memItemLeft" align="right" valign="top">static const <a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumCheapDPCorr.html#a5aba29468d9da4c80f8ad6d9a8611747">info_</a></td></tr>
<tr class="separator:a5aba29468d9da4c80f8ad6d9a8611747"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:af2a3585791e48daaefa948a708f16a4f"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="group__Kernel.html#ga3ba16951dc40c7a6c7457f3452e096ab">PeakSpectrum</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumCheapDPCorr.html#af2a3585791e48daaefa948a708f16a4f">lastconsensus</a> () const </td></tr>
<tr class="memdesc:af2a3585791e48daaefa948a708f16a4f"><td class="mdescLeft"> </td><td class="mdescRight">return consensus spectrum from last funtion call operator <a href="#af2a3585791e48daaefa948a708f16a4f">More...</a><br/></td></tr>
<tr class="separator:af2a3585791e48daaefa948a708f16a4f"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:af864711651505254c7f0a10461b1cb0c"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Map.html">Map</a>< <a class="el" href="group__Concept.html#gaba0996d26f7be2572973245b51852757">UInt</a>, <a class="el" href="group__Concept.html#gaba0996d26f7be2572973245b51852757">UInt</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumCheapDPCorr.html#af864711651505254c7f0a10461b1cb0c">getPeakMap</a> () const </td></tr>
<tr class="separator:af864711651505254c7f0a10461b1cb0c"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a3020bdf9c2636db5c77ccf31bc54c3cf"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumCheapDPCorr.html#a3020bdf9c2636db5c77ccf31bc54c3cf">setFactor</a> (<a class="el" href="classdouble.html">double</a> f)</td></tr>
<tr class="memdesc:a3020bdf9c2636db5c77ccf31bc54c3cf"><td class="mdescLeft"> </td><td class="mdescRight">set weighting of the second spectrum for consensus from next function call operator <a href="#a3020bdf9c2636db5c77ccf31bc54c3cf">More...</a><br/></td></tr>
<tr class="separator:a3020bdf9c2636db5c77ccf31bc54c3cf"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aea33b1d3b12fac714a9b5a9489d9ce10"><td class="memItemLeft" align="right" valign="top">static <a class="el" href="classOpenMS_1_1PeakSpectrumCompareFunctor.html">PeakSpectrumCompareFunctor</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumCheapDPCorr.html#aea33b1d3b12fac714a9b5a9489d9ce10">create</a> ()</td></tr>
<tr class="separator:aea33b1d3b12fac714a9b5a9489d9ce10"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:af73fd15708e50e77665070023a09cc87"><td class="memItemLeft" align="right" valign="top">static const <a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumCheapDPCorr.html#af73fd15708e50e77665070023a09cc87">getProductName</a> ()</td></tr>
<tr class="separator:af73fd15708e50e77665070023a09cc87"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="inherited"></a>
Additional Inherited Members</h2></td></tr>
<tr class="inherit_header pub_static_methods_classOpenMS_1_1PeakSpectrumCompareFunctor"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classOpenMS_1_1PeakSpectrumCompareFunctor')"><img src="closed.png" alt="-"/> Static Public Member Functions inherited from <a class="el" href="classOpenMS_1_1PeakSpectrumCompareFunctor.html">PeakSpectrumCompareFunctor</a></td></tr>
<tr class="memitem:a7899dbe105534dc1f81971dd71a26ff0 inherit pub_static_methods_classOpenMS_1_1PeakSpectrumCompareFunctor"><td class="memItemLeft" align="right" valign="top">static void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeakSpectrumCompareFunctor.html#a7899dbe105534dc1f81971dd71a26ff0">registerChildren</a> ()</td></tr>
<tr class="memdesc:a7899dbe105534dc1f81971dd71a26ff0 inherit pub_static_methods_classOpenMS_1_1PeakSpectrumCompareFunctor"><td class="mdescLeft"> </td><td class="mdescRight">registers all derived products <a href="#a7899dbe105534dc1f81971dd71a26ff0">More...</a><br/></td></tr>
<tr class="separator:a7899dbe105534dc1f81971dd71a26ff0 inherit pub_static_methods_classOpenMS_1_1PeakSpectrumCompareFunctor"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:af73fd15708e50e77665070023a09cc87 inherit pub_static_methods_classOpenMS_1_1PeakSpectrumCompareFunctor"><td class="memItemLeft" align="right" valign="top">static const <a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeakSpectrumCompareFunctor.html#af73fd15708e50e77665070023a09cc87">getProductName</a> ()</td></tr>
<tr class="separator:af73fd15708e50e77665070023a09cc87 inherit pub_static_methods_classOpenMS_1_1PeakSpectrumCompareFunctor"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pro_methods_classOpenMS_1_1DefaultParamHandler"><td colspan="2" onclick="javascript:toggleInherit('pro_methods_classOpenMS_1_1DefaultParamHandler')"><img src="closed.png" alt="-"/> Protected Member Functions inherited from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td></tr>
<tr class="memitem:a776f7572fc4f466e9527ca233471920d inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a776f7572fc4f466e9527ca233471920d">updateMembers_</a> ()</td></tr>
<tr class="memdesc:a776f7572fc4f466e9527ca233471920d inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">This method is used to update extra member variables at the end of the <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#abc8067511cfc949ae942ea2b08588f81" title="Sets the parameters. ">setParameters()</a> method. <a href="#a776f7572fc4f466e9527ca233471920d">More...</a><br/></td></tr>
<tr class="separator:a776f7572fc4f466e9527ca233471920d inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a2802c591e6d7fd3fd9cc35f5e875d0ba inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a2802c591e6d7fd3fd9cc35f5e875d0ba">defaultsToParam_</a> ()</td></tr>
<tr class="memdesc:a2802c591e6d7fd3fd9cc35f5e875d0ba inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Updates the parameters after the defaults have been set in the constructor. <a href="#a2802c591e6d7fd3fd9cc35f5e875d0ba">More...</a><br/></td></tr>
<tr class="separator:a2802c591e6d7fd3fd9cc35f5e875d0ba inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pro_attribs_classOpenMS_1_1DefaultParamHandler"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classOpenMS_1_1DefaultParamHandler')"><img src="closed.png" alt="-"/> Protected Attributes inherited from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td></tr>
<tr class="memitem:a28c73e623c63a4fe3bfceb1ae8274f39 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Param.html">Param</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a28c73e623c63a4fe3bfceb1ae8274f39">param_</a></td></tr>
<tr class="memdesc:a28c73e623c63a4fe3bfceb1ae8274f39 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Container for current parameters. <a href="#a28c73e623c63a4fe3bfceb1ae8274f39">More...</a><br/></td></tr>
<tr class="separator:a28c73e623c63a4fe3bfceb1ae8274f39 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a761b1937850c141d0c6fff0e4d633a04 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Param.html">Param</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a761b1937850c141d0c6fff0e4d633a04">defaults_</a></td></tr>
<tr class="memdesc:a761b1937850c141d0c6fff0e4d633a04 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Container for default parameters. This member should be filled in the constructor of derived classes! <a href="#a761b1937850c141d0c6fff0e4d633a04">More...</a><br/></td></tr>
<tr class="separator:a761b1937850c141d0c6fff0e4d633a04 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ac4b0e20bc59c7a5afe016c69067e428c inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">std::vector< <a class="el" href="classOpenMS_1_1String.html">String</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ac4b0e20bc59c7a5afe016c69067e428c">subsections_</a></td></tr>
<tr class="memdesc:ac4b0e20bc59c7a5afe016c69067e428c inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Container for registered subsections. This member should be filled in the constructor of derived classes! <a href="#ac4b0e20bc59c7a5afe016c69067e428c">More...</a><br/></td></tr>
<tr class="separator:ac4b0e20bc59c7a5afe016c69067e428c inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a5a51f3f150b09068256195e934339a19 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a5a51f3f150b09068256195e934339a19">error_name_</a></td></tr>
<tr class="memdesc:a5a51f3f150b09068256195e934339a19 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">Name that is displayed in error messages during the parameter checking. <a href="#a5a51f3f150b09068256195e934339a19">More...</a><br/></td></tr>
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<tr class="memitem:a7c3b265b697a57615da5cd3274780efd inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a7c3b265b697a57615da5cd3274780efd">check_defaults_</a></td></tr>
<tr class="memdesc:a7c3b265b697a57615da5cd3274780efd inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">If this member is set to false no checking if parameters in done;. <a href="#a7c3b265b697a57615da5cd3274780efd">More...</a><br/></td></tr>
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<tr class="memdesc:aba444910e4fccb93f91bf7ab135f508a inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft"> </td><td class="mdescRight">If this member is set to false no warning is emitted when defaults are empty;. <a href="#aba444910e4fccb93f91bf7ab135f508a">More...</a><br/></td></tr>
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p><a class="el" href="classOpenMS_1_1SpectrumCheapDPCorr.html" title="SpectrumCheapDPCorr calculates an optimal alignment on stick spectra. ">SpectrumCheapDPCorr</a> calculates an optimal alignment on stick spectra. </p>
<p>to save computing time only Peak Pairs that could get a score > 0 are considered which Peak Pairs could get scores > 0 ? <br/>
Peaks get a score depending on the difference in position and the heights of the peaks <br/>
pairs with positions that differ more than some limit get score 0</p>
<B>Parameters of this class are:</B><BR><BR>
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<td style="vertical-align:top"><b>variation</b></td>
<td style="vertical-align:top">float</td><td style="vertical-align:top">0.001</td>
<td style="vertical-align:top"> </td><td style="vertical-align:top">Maximum difference in position (in percent of the current m/z).<BR>Note that big values of variation ( 1 being the maximum ) result in consideration of all possible pairings which has a running time of O(n*n)</td>
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<td style="vertical-align:top"><b>int_cnt</b></td>
<td style="vertical-align:top">int</td><td style="vertical-align:top">0</td>
<td style="vertical-align:top"> </td><td style="vertical-align:top">How the peak heights are used in the score.<BR>0 = product<BR>1 = sqrt(product)<BR>2 = sum<BR>3 = agreeing intensity<BR></td>
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<td style="vertical-align:top"><b>keeppeaks</b></td>
<td style="vertical-align:top">int</td><td style="vertical-align:top">0</td>
<td style="vertical-align:top"> </td><td style="vertical-align:top">Flag that states if peaks without alignment partner are kept in the consensus spectrum.</td>
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<b>Note:</b>
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<LI> If a section name is documented, the documentation is displayed as tooltip.
<LI> Advanced parameter names are italic.
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</div><h2 class="groupheader">Constructor & Destructor Documentation</h2>
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<p>default constructor </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1SpectrumCheapDPCorr.html">SpectrumCheapDPCorr</a> </td>
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<td class="paramname"><em>source</em></td><td>)</td>
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<p>copy constructor </p>
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<p>destructor </p>
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<h2 class="groupheader">Member Function Documentation</h2>
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<p>similarity of two peaks </p>
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<p>O(n^2) dynamical programming. </p>
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<p>return consensus spectrum from last funtion call operator </p>
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<p>function call operator, calculates the similarity </p>
<p>Implements <a class="el" href="classOpenMS_1_1PeakSpectrumCompareFunctor.html#a1bdb502bb510e9a61ad5762ff98d5edc">PeakSpectrumCompareFunctor</a>.</p>
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<p>calculates self similarity </p>
<p>Implements <a class="el" href="classOpenMS_1_1PeakSpectrumCompareFunctor.html#a59481527ad716059d361e32eb1ed5cb3">PeakSpectrumCompareFunctor</a>.</p>
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<p>assignment operator </p>
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<td class="memname">void setFactor </td>
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<p>set weighting of the second spectrum for consensus from next function call operator </p>
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<h2 class="groupheader">Member Data Documentation</h2>
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<p>weighting factor for the next consensus spectrum </p>
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<p>should peaks with no alignment partner be kept in the consensus? </p>
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<td class="memname"><a class="el" href="group__Kernel.html#ga3ba16951dc40c7a6c7457f3452e096ab">PeakSpectrum</a> lastconsensus_</td>
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<p>consensus spectrum of the last comparison </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1Map.html">Map</a><<a class="el" href="group__Concept.html#gaba0996d26f7be2572973245b51852757">UInt</a>, <a class="el" href="group__Concept.html#gaba0996d26f7be2572973245b51852757">UInt</a>> peak_map_</td>
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<p>last peak map </p>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:28 using doxygen 1.8.5</font></TD>
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