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<li class="navelem"><a class="el" href="namespaceOpenMS.html">OpenMS</a></li><li class="navelem"><a class="el" href="classOpenMS_1_1SuffixArray.html">SuffixArray</a></li>  </ul>
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<div class="title">SuffixArray Member List</div>  </div>
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<p>This is the complete list of members for <a class="el" href="classOpenMS_1_1SuffixArray.html">SuffixArray</a>, including all inherited members.</p>
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  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1SuffixArray.html#a0affa38cc125d13f708da436e1f4e6d6">findSpec</a>(std::vector&lt; std::vector&lt; std::pair&lt; std::pair&lt; SignedSize, SignedSize &gt;, DoubleReal &gt; &gt; &gt; &amp;candidates, const std::vector&lt; DoubleReal &gt; &amp;spec)=0</td><td class="entry"><a class="el" href="classOpenMS_1_1SuffixArray.html">SuffixArray</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1SuffixArray.html#a758e89b9a3f517a9a496a354b7e2f86e">getNumberOfModifications</a>()=0</td><td class="entry"><a class="el" href="classOpenMS_1_1SuffixArray.html">SuffixArray</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1SuffixArray.html#a181d0d02184726d599f9039570c61305">getTags</a>()=0</td><td class="entry"><a class="el" href="classOpenMS_1_1SuffixArray.html">SuffixArray</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1SuffixArray.html#a98bd68f109f31bed227c8ee46d5ab6bc">getTolerance</a>() const =0</td><td class="entry"><a class="el" href="classOpenMS_1_1SuffixArray.html">SuffixArray</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1SuffixArray.html#a65af38a9cc6ff114c7f509cd3f0f607b">getUseTags</a>()=0</td><td class="entry"><a class="el" href="classOpenMS_1_1SuffixArray.html">SuffixArray</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1SuffixArray.html#af622ecda02a91322b72d7de10ae9a6f6">isDigestingEnd</a>(const char aa1, const char aa2) const =0</td><td class="entry"><a class="el" href="classOpenMS_1_1SuffixArray.html">SuffixArray</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1SuffixArray.html#ab02477e3a21855a2103a9f23e1d8043e">open</a>(const String &amp;filename)=0</td><td class="entry"><a class="el" href="classOpenMS_1_1SuffixArray.html">SuffixArray</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1SuffixArray.html#a85e900bc7d60e593b51054ae7ebf72ea">printStatistic</a>()=0</td><td class="entry"><a class="el" href="classOpenMS_1_1SuffixArray.html">SuffixArray</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1SuffixArray.html#ac089570bb6a9e2fe55702ca4401588d6">save</a>(const String &amp;filename)=0</td><td class="entry"><a class="el" href="classOpenMS_1_1SuffixArray.html">SuffixArray</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1SuffixArray.html#a42afad5b2df41f737839ebf8e31d6cb1">setNumberOfModifications</a>(Size number_of_mods)=0</td><td class="entry"><a class="el" href="classOpenMS_1_1SuffixArray.html">SuffixArray</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1SuffixArray.html#af1b40afd1ef4b811c37612cd4ced7d8e">setTags</a>(const std::vector&lt; String &gt; &amp;tags)=0</td><td class="entry"><a class="el" href="classOpenMS_1_1SuffixArray.html">SuffixArray</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1SuffixArray.html#a398690ada878a7dc5e01d57929ef2363">setTolerance</a>(DoubleReal t)=0</td><td class="entry"><a class="el" href="classOpenMS_1_1SuffixArray.html">SuffixArray</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1SuffixArray.html#a10824f8f112c42e00795592f7ddba6b3">setUseTags</a>(bool use_tags)=0</td><td class="entry"><a class="el" href="classOpenMS_1_1SuffixArray.html">SuffixArray</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1SuffixArray.html#abfdabd2b559c341d60a3a3979e81daaa">SuffixArray</a>(const String &amp;st, const String &amp;filename)</td><td class="entry"><a class="el" href="classOpenMS_1_1SuffixArray.html">SuffixArray</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1SuffixArray.html#a4b1b30caafcf911c9e5b53d454fc3d42">SuffixArray</a>(const SuffixArray &amp;sa)</td><td class="entry"><a class="el" href="classOpenMS_1_1SuffixArray.html">SuffixArray</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1SuffixArray.html#a7d57710f630ba50753236ec1860bc096">SuffixArray</a>()</td><td class="entry"><a class="el" href="classOpenMS_1_1SuffixArray.html">SuffixArray</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="classOpenMS_1_1SuffixArray.html#afdaf3cb169ec00377bee2cd175d8e1f8">toString</a>()=0</td><td class="entry"><a class="el" href="classOpenMS_1_1SuffixArray.html">SuffixArray</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
  <tr><td class="entry"><a class="el" href="classOpenMS_1_1SuffixArray.html#afa4acc59f254c5cb91963806dd8d9757">~SuffixArray</a>()=0</td><td class="entry"><a class="el" href="classOpenMS_1_1SuffixArray.html">SuffixArray</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:29 using doxygen 1.8.5</font></TD>
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