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<li class="navelem"><a class="el" href="namespaceOpenMS.html">OpenMS</a></li><li class="navelem"><a class="el" href="classOpenMS_1_1TOPPASBase.html">TOPPASBase</a></li>  </ul>
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<a href="#pub-slots">Public Slots</a> &#124;
<a href="#pub-methods">Public Member Functions</a> &#124;
<a href="#pub-static-attribs">Static Public Attributes</a> &#124;
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<div class="title">TOPPASBase Class Reference<div class="ingroups"><a class="el" href="group__TOPPAS__elements.html">TOPPAS</a></div></div>  </div>
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<p>Main window of the TOPPAS tool.  
 <a href="classOpenMS_1_1TOPPASBase.html#details">More...</a></p>

<p><code>#include &lt;<a class="el" href="TOPPASBase_8h_source.html">OpenMS/VISUAL/APPLICATIONS/TOPPASBase.h</a>&gt;</code></p>
<div class="dynheader">
Inheritance diagram for TOPPASBase:</div>
<div class="dyncontent">
 <div class="center">
  <img src="classOpenMS_1_1TOPPASBase.png" usemap="#TOPPASBase_map" alt=""/>
  <map id="TOPPASBase_map" name="TOPPASBase_map">
<area href="classQMainWindow.html" alt="QMainWindow" shape="rect" coords="0,0,133,24"/>
<area href="classOpenMS_1_1DefaultParamHandler.html" title="A base class for all classes handling default parameters. " alt="DefaultParamHandler" shape="rect" coords="143,0,276,24"/>
</map>
 </div></div>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-slots"></a>
Public Slots</h2></td></tr>
<tr class="memitem:a582b9d08f4ab872a48b3c02157b98593"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a582b9d08f4ab872a48b3c02157b98593">addTOPPASFile</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;file_name, bool in_new_window=true)</td></tr>
<tr class="memdesc:a582b9d08f4ab872a48b3c02157b98593"><td class="mdescLeft">&#160;</td><td class="mdescRight">opens the file in a new window  <a href="#a582b9d08f4ab872a48b3c02157b98593">More...</a><br/></td></tr>
<tr class="separator:a582b9d08f4ab872a48b3c02157b98593"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a97b77d0916ad8455109c30f8864b5407"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a97b77d0916ad8455109c30f8864b5407">openFileDialog</a> ()</td></tr>
<tr class="memdesc:a97b77d0916ad8455109c30f8864b5407"><td class="mdescLeft">&#160;</td><td class="mdescRight">shows the dialog for opening files  <a href="#a97b77d0916ad8455109c30f8864b5407">More...</a><br/></td></tr>
<tr class="separator:a97b77d0916ad8455109c30f8864b5407"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a208dfd62de31507d975da04c318d0e80"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a208dfd62de31507d975da04c318d0e80">openExampleDialog</a> ()</td></tr>
<tr class="memdesc:a208dfd62de31507d975da04c318d0e80"><td class="mdescLeft">&#160;</td><td class="mdescRight">shows the dialog for opening example files  <a href="#a208dfd62de31507d975da04c318d0e80">More...</a><br/></td></tr>
<tr class="separator:a208dfd62de31507d975da04c318d0e80"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a61037f7b27b0427d3ff2160ff4199d68"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a61037f7b27b0427d3ff2160ff4199d68">newPipeline</a> (const int id=-1)</td></tr>
<tr class="memdesc:a61037f7b27b0427d3ff2160ff4199d68"><td class="mdescLeft">&#160;</td><td class="mdescRight">shows the dialog for creating a new file (pass IDINITIALUNTITLED as <code>id</code> if its the first call)  <a href="#a61037f7b27b0427d3ff2160ff4199d68">More...</a><br/></td></tr>
<tr class="separator:a61037f7b27b0427d3ff2160ff4199d68"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aac817d9927b9d971b720a9e34abb66ca"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#aac817d9927b9d971b720a9e34abb66ca">includePipeline</a> ()</td></tr>
<tr class="memdesc:aac817d9927b9d971b720a9e34abb66ca"><td class="mdescLeft">&#160;</td><td class="mdescRight">shows the dialog for including another workflow in the currently opened one  <a href="#aac817d9927b9d971b720a9e34abb66ca">More...</a><br/></td></tr>
<tr class="separator:aac817d9927b9d971b720a9e34abb66ca"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ae1ce47a5e7d3b7b35354920271083d25"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#ae1ce47a5e7d3b7b35354920271083d25">saveCurrentPipelineAs</a> ()</td></tr>
<tr class="memdesc:ae1ce47a5e7d3b7b35354920271083d25"><td class="mdescLeft">&#160;</td><td class="mdescRight">shows the dialog for saving the current file and updates the current tab caption  <a href="#ae1ce47a5e7d3b7b35354920271083d25">More...</a><br/></td></tr>
<tr class="separator:ae1ce47a5e7d3b7b35354920271083d25"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a7134dba5f240779e2f9796ceaa1bdb2c"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a7134dba5f240779e2f9796ceaa1bdb2c">savePipeline</a> ()</td></tr>
<tr class="memdesc:a7134dba5f240779e2f9796ceaa1bdb2c"><td class="mdescLeft">&#160;</td><td class="mdescRight">saves the pipeline (determined by Qt's sender mechanism)  <a href="#a7134dba5f240779e2f9796ceaa1bdb2c">More...</a><br/></td></tr>
<tr class="separator:a7134dba5f240779e2f9796ceaa1bdb2c"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ac260355ee5d45ae2229fad3fab3bf42f"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#ac260355ee5d45ae2229fad3fab3bf42f">exportAsImage</a> ()</td></tr>
<tr class="memdesc:ac260355ee5d45ae2229fad3fab3bf42f"><td class="mdescLeft">&#160;</td><td class="mdescRight">exports the current pipeline as image  <a href="#ac260355ee5d45ae2229fad3fab3bf42f">More...</a><br/></td></tr>
<tr class="separator:ac260355ee5d45ae2229fad3fab3bf42f"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ae344ec338cc139cf991afe7edf99268b"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#ae344ec338cc139cf991afe7edf99268b">loadPipelineResourceFile</a> ()</td></tr>
<tr class="memdesc:ae344ec338cc139cf991afe7edf99268b"><td class="mdescLeft">&#160;</td><td class="mdescRight">shows a file dialog for selecting the resource file to load  <a href="#ae344ec338cc139cf991afe7edf99268b">More...</a><br/></td></tr>
<tr class="separator:ae344ec338cc139cf991afe7edf99268b"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:acc9e48279d18b4b5caa6823bee22f8d8"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#acc9e48279d18b4b5caa6823bee22f8d8">savePipelineResourceFile</a> ()</td></tr>
<tr class="memdesc:acc9e48279d18b4b5caa6823bee22f8d8"><td class="mdescLeft">&#160;</td><td class="mdescRight">shows a file dialog for selecting the resource file to write to  <a href="#acc9e48279d18b4b5caa6823bee22f8d8">More...</a><br/></td></tr>
<tr class="separator:acc9e48279d18b4b5caa6823bee22f8d8"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ad6388f13dad5f436779fe675e2d4981c"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#ad6388f13dad5f436779fe675e2d4981c">openOnlinePipelineRepository</a> ()</td></tr>
<tr class="memdesc:ad6388f13dad5f436779fe675e2d4981c"><td class="mdescLeft">&#160;</td><td class="mdescRight">opens the <a class="el" href="namespaceOpenMS.html" title="Main OpenMS namespace. ">OpenMS</a> Homepage to download example workflows  <a href="#ad6388f13dad5f436779fe675e2d4981c">More...</a><br/></td></tr>
<tr class="separator:ad6388f13dad5f436779fe675e2d4981c"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:af51e5796d9cbf0a727839fa4585a0a03"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#af51e5796d9cbf0a727839fa4585a0a03">preferencesDialog</a> ()</td></tr>
<tr class="memdesc:af51e5796d9cbf0a727839fa4585a0a03"><td class="mdescLeft">&#160;</td><td class="mdescRight">shows the preferences dialog  <a href="#af51e5796d9cbf0a727839fa4585a0a03">More...</a><br/></td></tr>
<tr class="separator:af51e5796d9cbf0a727839fa4585a0a03"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a7b2218783c20babf5c6cfaee9b43f62a"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a7b2218783c20babf5c6cfaee9b43f62a">updateCurrentPath</a> ()</td></tr>
<tr class="memdesc:a7b2218783c20babf5c6cfaee9b43f62a"><td class="mdescLeft">&#160;</td><td class="mdescRight">changes the current path according to the currently active window/layer  <a href="#a7b2218783c20babf5c6cfaee9b43f62a">More...</a><br/></td></tr>
<tr class="separator:a7b2218783c20babf5c6cfaee9b43f62a"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:af8468d886fa3eea83c3554d63c1bdd8c"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#af8468d886fa3eea83c3554d63c1bdd8c">updateTabBar</a> (<a class="el" href="classQWidget.html">QWidget</a> *w)</td></tr>
<tr class="memdesc:af8468d886fa3eea83c3554d63c1bdd8c"><td class="mdescLeft">&#160;</td><td class="mdescRight">brings the tab corresponding to the active window in front  <a href="#af8468d886fa3eea83c3554d63c1bdd8c">More...</a><br/></td></tr>
<tr class="separator:af8468d886fa3eea83c3554d63c1bdd8c"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ac63a90a3b880d5e9cfd47b54b336be8b"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#ac63a90a3b880d5e9cfd47b54b336be8b">showAboutDialog</a> ()</td></tr>
<tr class="memdesc:ac63a90a3b880d5e9cfd47b54b336be8b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Shows the 'About' dialog.  <a href="#ac63a90a3b880d5e9cfd47b54b336be8b">More...</a><br/></td></tr>
<tr class="separator:ac63a90a3b880d5e9cfd47b54b336be8b"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ab15d57b00f5a06ac4a9e393036212829"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#ab15d57b00f5a06ac4a9e393036212829">showURL</a> ()</td></tr>
<tr class="memdesc:ab15d57b00f5a06ac4a9e393036212829"><td class="mdescLeft">&#160;</td><td class="mdescRight">shows the URL stored in the data of the sender QAction  <a href="#ab15d57b00f5a06ac4a9e393036212829">More...</a><br/></td></tr>
<tr class="separator:ab15d57b00f5a06ac4a9e393036212829"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ac7fa650b55659fe58344e567b0aa6660"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#ac7fa650b55659fe58344e567b0aa6660">showStatusMessage</a> (std::string msg, <a class="el" href="group__Concept.html#gaba0996d26f7be2572973245b51852757">OpenMS::UInt</a> time)</td></tr>
<tr class="memdesc:ac7fa650b55659fe58344e567b0aa6660"><td class="mdescLeft">&#160;</td><td class="mdescRight">Shows a status message in the status bar.  <a href="#ac7fa650b55659fe58344e567b0aa6660">More...</a><br/></td></tr>
<tr class="separator:ac7fa650b55659fe58344e567b0aa6660"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a1f3f64de44f2621ed554af31b78c20de"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a1f3f64de44f2621ed554af31b78c20de">showCursorStatus</a> (<a class="el" href="classdouble.html">double</a> x, <a class="el" href="classdouble.html">double</a> y)</td></tr>
<tr class="memdesc:a1f3f64de44f2621ed554af31b78c20de"><td class="mdescLeft">&#160;</td><td class="mdescRight">shows x,y coordinates in the status bar  <a href="#a1f3f64de44f2621ed554af31b78c20de">More...</a><br/></td></tr>
<tr class="separator:a1f3f64de44f2621ed554af31b78c20de"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ab2ff17b940ae7aca4827d832ceeaeda4"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#ab2ff17b940ae7aca4827d832ceeaeda4">closeFile</a> ()</td></tr>
<tr class="memdesc:ab2ff17b940ae7aca4827d832ceeaeda4"><td class="mdescLeft">&#160;</td><td class="mdescRight">closes the active window  <a href="#ab2ff17b940ae7aca4827d832ceeaeda4">More...</a><br/></td></tr>
<tr class="separator:ab2ff17b940ae7aca4827d832ceeaeda4"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a3d36bfeded252dc33959e4f8815d468a"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a3d36bfeded252dc33959e4f8815d468a">updateToolBar</a> ()</td></tr>
<tr class="memdesc:a3d36bfeded252dc33959e4f8815d468a"><td class="mdescLeft">&#160;</td><td class="mdescRight">updates the toolbar  <a href="#a3d36bfeded252dc33959e4f8815d468a">More...</a><br/></td></tr>
<tr class="separator:a3d36bfeded252dc33959e4f8815d468a"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a4fe7e762cb5bf01fefb8e1a5d0071e1a"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a4fe7e762cb5bf01fefb8e1a5d0071e1a">runPipeline</a> ()</td></tr>
<tr class="memdesc:a4fe7e762cb5bf01fefb8e1a5d0071e1a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Runs the pipeline of the current window.  <a href="#a4fe7e762cb5bf01fefb8e1a5d0071e1a">More...</a><br/></td></tr>
<tr class="separator:a4fe7e762cb5bf01fefb8e1a5d0071e1a"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ae6d95c909402024df0f7a78d69a7c424"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#ae6d95c909402024df0f7a78d69a7c424">abortPipeline</a> ()</td></tr>
<tr class="memdesc:ae6d95c909402024df0f7a78d69a7c424"><td class="mdescLeft">&#160;</td><td class="mdescRight">Terminates the current pipeline.  <a href="#ae6d95c909402024df0f7a78d69a7c424">More...</a><br/></td></tr>
<tr class="separator:ae6d95c909402024df0f7a78d69a7c424"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ad313b7a2f2e778ba2f91c2fa0447f4ea"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#ad313b7a2f2e778ba2f91c2fa0447f4ea">toolStarted</a> ()</td></tr>
<tr class="memdesc:ad313b7a2f2e778ba2f91c2fa0447f4ea"><td class="mdescLeft">&#160;</td><td class="mdescRight">Called when a tool is started.  <a href="#ad313b7a2f2e778ba2f91c2fa0447f4ea">More...</a><br/></td></tr>
<tr class="separator:ad313b7a2f2e778ba2f91c2fa0447f4ea"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a5999feb381958474518086dafd44c99e"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a5999feb381958474518086dafd44c99e">toolFinished</a> ()</td></tr>
<tr class="memdesc:a5999feb381958474518086dafd44c99e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Called when a tool is finished.  <a href="#a5999feb381958474518086dafd44c99e">More...</a><br/></td></tr>
<tr class="separator:a5999feb381958474518086dafd44c99e"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:af215168f972a65183fa5819430870d4e"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#af215168f972a65183fa5819430870d4e">toolCrashed</a> ()</td></tr>
<tr class="memdesc:af215168f972a65183fa5819430870d4e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Called when a tool crashes.  <a href="#af215168f972a65183fa5819430870d4e">More...</a><br/></td></tr>
<tr class="separator:af215168f972a65183fa5819430870d4e"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aec04230b69cc4bcb9edbc41b80baa55f"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#aec04230b69cc4bcb9edbc41b80baa55f">toolFailed</a> ()</td></tr>
<tr class="memdesc:aec04230b69cc4bcb9edbc41b80baa55f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Called when a tool execution fails.  <a href="#aec04230b69cc4bcb9edbc41b80baa55f">More...</a><br/></td></tr>
<tr class="separator:aec04230b69cc4bcb9edbc41b80baa55f"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a1c9368295d712e9f38580b6d20e1bebc"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a1c9368295d712e9f38580b6d20e1bebc">outputVertexFinished</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;file)</td></tr>
<tr class="memdesc:a1c9368295d712e9f38580b6d20e1bebc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Called when a file was successfully written to an output vertex.  <a href="#a1c9368295d712e9f38580b6d20e1bebc">More...</a><br/></td></tr>
<tr class="separator:a1c9368295d712e9f38580b6d20e1bebc"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ae4b86c5e07ea95506d6d30741efa590d"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#ae4b86c5e07ea95506d6d30741efa590d">updateTOPPOutputLog</a> (const QString &amp;out)</td></tr>
<tr class="memdesc:ae4b86c5e07ea95506d6d30741efa590d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Called when a TOPP tool produces (error) output.  <a href="#ae4b86c5e07ea95506d6d30741efa590d">More...</a><br/></td></tr>
<tr class="separator:ae4b86c5e07ea95506d6d30741efa590d"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a5d8bef6119dd93d5e20252cf736e488f"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a5d8bef6119dd93d5e20252cf736e488f">showPipelineFinishedLogMessage</a> ()</td></tr>
<tr class="memdesc:a5d8bef6119dd93d5e20252cf736e488f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Called by the scene if the pipeline execution finishes successfully.  <a href="#a5d8bef6119dd93d5e20252cf736e488f">More...</a><br/></td></tr>
<tr class="separator:a5d8bef6119dd93d5e20252cf736e488f"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:af25c1f2cd8bb8861608b90a8f2d90c92"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#af25c1f2cd8bb8861608b90a8f2d90c92">saveToClipboard</a> (<a class="el" href="classOpenMS_1_1TOPPASScene.html">TOPPASScene</a> *scene)</td></tr>
<tr class="memdesc:af25c1f2cd8bb8861608b90a8f2d90c92"><td class="mdescLeft">&#160;</td><td class="mdescRight">Saves <code>scene</code> to the clipboard.  <a href="#af25c1f2cd8bb8861608b90a8f2d90c92">More...</a><br/></td></tr>
<tr class="separator:af25c1f2cd8bb8861608b90a8f2d90c92"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a09148723879585973ac00755a420b3e4"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a09148723879585973ac00755a420b3e4">sendClipboardContent</a> ()</td></tr>
<tr class="memdesc:a09148723879585973ac00755a420b3e4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sends the clipboard content to the sender of the connected signal.  <a href="#a09148723879585973ac00755a420b3e4">More...</a><br/></td></tr>
<tr class="separator:a09148723879585973ac00755a420b3e4"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a18a56e69770627550c587e6437d3f6a3"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a18a56e69770627550c587e6437d3f6a3">refreshParameters</a> ()</td></tr>
<tr class="memdesc:a18a56e69770627550c587e6437d3f6a3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Refreshes the parameters of the TOPP tools of the current workflow and stores an updated workflow including the current parameters.  <a href="#a18a56e69770627550c587e6437d3f6a3">More...</a><br/></td></tr>
<tr class="separator:a18a56e69770627550c587e6437d3f6a3"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aa2044b4fb1589b5fb450b65c2b9b3636"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#aa2044b4fb1589b5fb450b65c2b9b3636">openFilesInTOPPView</a> (QStringList all_files)</td></tr>
<tr class="memdesc:aa2044b4fb1589b5fb450b65c2b9b3636"><td class="mdescLeft">&#160;</td><td class="mdescRight">Open files in a new TOPPView instance.  <a href="#aa2044b4fb1589b5fb450b65c2b9b3636">More...</a><br/></td></tr>
<tr class="separator:aa2044b4fb1589b5fb450b65c2b9b3636"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a1925db9db81391333058c8851fa3efd9"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a1925db9db81391333058c8851fa3efd9">openToppasFile</a> (QString filename)</td></tr>
<tr class="memdesc:a1925db9db81391333058c8851fa3efd9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Opens a toppas file.  <a href="#a1925db9db81391333058c8851fa3efd9">More...</a><br/></td></tr>
<tr class="separator:a1925db9db81391333058c8851fa3efd9"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:a0d556823d1bc2537b662aa979b184911"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a0d556823d1bc2537b662aa979b184911">TOPPASBase</a> (<a class="el" href="classQWidget.html">QWidget</a> *parent=0)</td></tr>
<tr class="memdesc:a0d556823d1bc2537b662aa979b184911"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructor.  <a href="#a0d556823d1bc2537b662aa979b184911">More...</a><br/></td></tr>
<tr class="separator:a0d556823d1bc2537b662aa979b184911"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a90b94fe09745cca382498e76f86bfd57"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a90b94fe09745cca382498e76f86bfd57">~TOPPASBase</a> ()</td></tr>
<tr class="memdesc:a90b94fe09745cca382498e76f86bfd57"><td class="mdescLeft">&#160;</td><td class="mdescRight">Destructor.  <a href="#a90b94fe09745cca382498e76f86bfd57">More...</a><br/></td></tr>
<tr class="separator:a90b94fe09745cca382498e76f86bfd57"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a4eecbb3c7b39a36a9f365e4dc2a89387"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a4eecbb3c7b39a36a9f365e4dc2a89387">loadPreferences</a> (<a class="el" href="classOpenMS_1_1String.html">String</a> filename=&quot;&quot;)</td></tr>
<tr class="memdesc:a4eecbb3c7b39a36a9f365e4dc2a89387"><td class="mdescLeft">&#160;</td><td class="mdescRight">Loads the preferences from the filename given.  <a href="#a4eecbb3c7b39a36a9f365e4dc2a89387">More...</a><br/></td></tr>
<tr class="separator:a4eecbb3c7b39a36a9f365e4dc2a89387"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a23668b43705781c1cd284bda6ab40abc"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a23668b43705781c1cd284bda6ab40abc">savePreferences</a> ()</td></tr>
<tr class="memdesc:a23668b43705781c1cd284bda6ab40abc"><td class="mdescLeft">&#160;</td><td class="mdescRight">stores the preferences (used when this window is closed)  <a href="#a23668b43705781c1cd284bda6ab40abc">More...</a><br/></td></tr>
<tr class="separator:a23668b43705781c1cd284bda6ab40abc"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:af269aadf469e6fa54fe6e9d5aee430d9"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#af269aadf469e6fa54fe6e9d5aee430d9">loadFiles</a> (const <a class="el" href="classOpenMS_1_1StringList.html">StringList</a> &amp;list, QSplashScreen *splash_screen)</td></tr>
<tr class="memdesc:af269aadf469e6fa54fe6e9d5aee430d9"><td class="mdescLeft">&#160;</td><td class="mdescRight">loads the files and updates the splash screen  <a href="#af269aadf469e6fa54fe6e9d5aee430d9">More...</a><br/></td></tr>
<tr class="separator:af269aadf469e6fa54fe6e9d5aee430d9"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pub_methods_classOpenMS_1_1DefaultParamHandler"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classOpenMS_1_1DefaultParamHandler')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td></tr>
<tr class="memitem:afb6802fda161cb0c1a4a05597f94aecc inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#afb6802fda161cb0c1a4a05597f94aecc">DefaultParamHandler</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;name)</td></tr>
<tr class="memdesc:afb6802fda161cb0c1a4a05597f94aecc inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructor with name that is displayed in error messages.  <a href="#afb6802fda161cb0c1a4a05597f94aecc">More...</a><br/></td></tr>
<tr class="separator:afb6802fda161cb0c1a4a05597f94aecc inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a954da7eef3cfddda446574eaadd20abb inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a954da7eef3cfddda446574eaadd20abb">DefaultParamHandler</a> (const <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &amp;rhs)</td></tr>
<tr class="memdesc:a954da7eef3cfddda446574eaadd20abb inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Copy constructor.  <a href="#a954da7eef3cfddda446574eaadd20abb">More...</a><br/></td></tr>
<tr class="separator:a954da7eef3cfddda446574eaadd20abb inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a11e9d6dd34fe8860874aa8abe0ec121b inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a11e9d6dd34fe8860874aa8abe0ec121b">~DefaultParamHandler</a> ()</td></tr>
<tr class="memdesc:a11e9d6dd34fe8860874aa8abe0ec121b inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Destructor.  <a href="#a11e9d6dd34fe8860874aa8abe0ec121b">More...</a><br/></td></tr>
<tr class="separator:a11e9d6dd34fe8860874aa8abe0ec121b inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ae6b6d68036a573a44f6609460ba2dfb6 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ae6b6d68036a573a44f6609460ba2dfb6">operator=</a> (const <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &amp;rhs)</td></tr>
<tr class="memdesc:ae6b6d68036a573a44f6609460ba2dfb6 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Assignment operator.  <a href="#ae6b6d68036a573a44f6609460ba2dfb6">More...</a><br/></td></tr>
<tr class="separator:ae6b6d68036a573a44f6609460ba2dfb6 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ac435f2dd4d9f9328db83af97129a8d7e inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ac435f2dd4d9f9328db83af97129a8d7e">operator==</a> (const <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a> &amp;rhs) const </td></tr>
<tr class="memdesc:ac435f2dd4d9f9328db83af97129a8d7e inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Equality operator.  <a href="#ac435f2dd4d9f9328db83af97129a8d7e">More...</a><br/></td></tr>
<tr class="separator:ac435f2dd4d9f9328db83af97129a8d7e inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:abc8067511cfc949ae942ea2b08588f81 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#abc8067511cfc949ae942ea2b08588f81">setParameters</a> (const <a class="el" href="classOpenMS_1_1Param.html">Param</a> &amp;param)</td></tr>
<tr class="memdesc:abc8067511cfc949ae942ea2b08588f81 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets the parameters.  <a href="#abc8067511cfc949ae942ea2b08588f81">More...</a><br/></td></tr>
<tr class="separator:abc8067511cfc949ae942ea2b08588f81 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a7f6aab5a7dfbdd1c062a4352a29361f3 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1Param.html">Param</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a7f6aab5a7dfbdd1c062a4352a29361f3">getParameters</a> () const </td></tr>
<tr class="memdesc:a7f6aab5a7dfbdd1c062a4352a29361f3 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Non-mutable access to the parameters.  <a href="#a7f6aab5a7dfbdd1c062a4352a29361f3">More...</a><br/></td></tr>
<tr class="separator:a7f6aab5a7dfbdd1c062a4352a29361f3 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a02f02fa9832ca3e8d47c575a39803a2a inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1Param.html">Param</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a02f02fa9832ca3e8d47c575a39803a2a">getDefaults</a> () const </td></tr>
<tr class="memdesc:a02f02fa9832ca3e8d47c575a39803a2a inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Non-mutable access to the default parameters.  <a href="#a02f02fa9832ca3e8d47c575a39803a2a">More...</a><br/></td></tr>
<tr class="separator:a02f02fa9832ca3e8d47c575a39803a2a inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aaee0f2845288173de9f6ad47e6ad31d5 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#aaee0f2845288173de9f6ad47e6ad31d5">getName</a> () const </td></tr>
<tr class="memdesc:aaee0f2845288173de9f6ad47e6ad31d5 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Non-mutable access to the name.  <a href="#aaee0f2845288173de9f6ad47e6ad31d5">More...</a><br/></td></tr>
<tr class="separator:aaee0f2845288173de9f6ad47e6ad31d5 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a77d37f2e1c12e8bd33ea0e660a89e927 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a77d37f2e1c12e8bd33ea0e660a89e927">setName</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;name)</td></tr>
<tr class="memdesc:a77d37f2e1c12e8bd33ea0e660a89e927 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Mutable access to the name.  <a href="#a77d37f2e1c12e8bd33ea0e660a89e927">More...</a><br/></td></tr>
<tr class="separator:a77d37f2e1c12e8bd33ea0e660a89e927 inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a768d4a2093627a2f34728656a9721bdf inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">const std::vector&lt; <a class="el" href="classOpenMS_1_1String.html">String</a> &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a768d4a2093627a2f34728656a9721bdf">getSubsections</a> () const </td></tr>
<tr class="memdesc:a768d4a2093627a2f34728656a9721bdf inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Non-mutable access to the registered subsections.  <a href="#a768d4a2093627a2f34728656a9721bdf">More...</a><br/></td></tr>
<tr class="separator:a768d4a2093627a2f34728656a9721bdf inherit pub_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-static-methods"></a>
Static Public Member Functions</h2></td></tr>
<tr><td colspan="2"><div class="groupHeader">common functions used in TOPPAS and TOPPView</div></td></tr>
<tr class="memitem:a9f3866e4cb832062742a80e5a5c12685"><td class="memItemLeft" align="right" valign="top">static <a class="el" href="classOpenMS_1_1TOPPASTreeView.html">TOPPASTreeView</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a9f3866e4cb832062742a80e5a5c12685">createTOPPToolsTreeWidget</a> (<a class="el" href="classQWidget.html">QWidget</a> *parent_widget=0)</td></tr>
<tr class="memdesc:a9f3866e4cb832062742a80e5a5c12685"><td class="mdescLeft">&#160;</td><td class="mdescRight">Creates and fills a tree widget with all available tools.  <a href="#a9f3866e4cb832062742a80e5a5c12685">More...</a><br/></td></tr>
<tr class="separator:a9f3866e4cb832062742a80e5a5c12685"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a0c3d3da9c968a52089d602934ace3f28"><td class="memItemLeft" align="right" valign="top">static QString&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a0c3d3da9c968a52089d602934ace3f28">savePipelineAs</a> (<a class="el" href="classOpenMS_1_1TOPPASWidget.html">TOPPASWidget</a> *w, QString current_path)</td></tr>
<tr class="separator:a0c3d3da9c968a52089d602934ace3f28"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a234041073ed00171a96d7d4d0df7471c"><td class="memItemLeft" align="right" valign="top">static QString&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a234041073ed00171a96d7d4d0df7471c">loadPipelineResourceFile</a> (<a class="el" href="classOpenMS_1_1TOPPASWidget.html">TOPPASWidget</a> *w, QString current_path)</td></tr>
<tr class="memdesc:a234041073ed00171a96d7d4d0df7471c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Loads and sets the resources of the <a class="el" href="classOpenMS_1_1TOPPASWidget.html" title="Widget visualizing and allowing to edit TOPP pipelines. ">TOPPASWidget</a>.  <a href="#a234041073ed00171a96d7d4d0df7471c">More...</a><br/></td></tr>
<tr class="separator:a234041073ed00171a96d7d4d0df7471c"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ad65396dd7691d9de528d5bfc3b6707be"><td class="memItemLeft" align="right" valign="top">static QString&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#ad65396dd7691d9de528d5bfc3b6707be">savePipelineResourceFile</a> (<a class="el" href="classOpenMS_1_1TOPPASWidget.html">TOPPASWidget</a> *w, QString current_path)</td></tr>
<tr class="memdesc:ad65396dd7691d9de528d5bfc3b6707be"><td class="mdescLeft">&#160;</td><td class="mdescRight">Saves the resources of the <a class="el" href="classOpenMS_1_1TOPPASWidget.html" title="Widget visualizing and allowing to edit TOPP pipelines. ">TOPPASWidget</a>.  <a href="#ad65396dd7691d9de528d5bfc3b6707be">More...</a><br/></td></tr>
<tr class="separator:ad65396dd7691d9de528d5bfc3b6707be"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:abc580cb500d458ddef9308feca871326"><td class="memItemLeft" align="right" valign="top">static QString&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#abc580cb500d458ddef9308feca871326">refreshPipelineParameters</a> (<a class="el" href="classOpenMS_1_1TOPPASWidget.html">TOPPASWidget</a> *tw, QString current_path)</td></tr>
<tr class="memdesc:abc580cb500d458ddef9308feca871326"><td class="mdescLeft">&#160;</td><td class="mdescRight">Refreshes the TOPP tools parameters of the pipeline.  <a href="#abc580cb500d458ddef9308feca871326">More...</a><br/></td></tr>
<tr class="separator:abc580cb500d458ddef9308feca871326"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-static-attribs"></a>
Static Public Attributes</h2></td></tr>
<tr class="memitem:a8229ecf286bd09d8e6d56a34b0512d23"><td class="memItemLeft" align="right" valign="top">static int const&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a8229ecf286bd09d8e6d56a34b0512d23">IDINITIALUNTITLED</a> = 1000</td></tr>
<tr class="memdesc:a8229ecf286bd09d8e6d56a34b0512d23"><td class="mdescLeft">&#160;</td><td class="mdescRight">use this for the first call to <a class="el" href="classOpenMS_1_1TOPPASBase.html#a61037f7b27b0427d3ff2160ff4199d68" title="shows the dialog for creating a new file (pass IDINITIALUNTITLED as id if its the first call) ...">newPipeline()</a>, to ensure that the first empty (and unmodified) workspace is closed iff existing workflows are loaded  <a href="#a8229ecf286bd09d8e6d56a34b0512d23">More...</a><br/></td></tr>
<tr class="separator:a8229ecf286bd09d8e6d56a34b0512d23"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pro-types"></a>
Protected Types</h2></td></tr>
<tr class="memitem:a25fc0d0af7fa6b9118e460ff06bbd36c"><td class="memItemLeft" align="right" valign="top">enum &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a25fc0d0af7fa6b9118e460ff06bbd36c">LogState</a> { <a class="el" href="classOpenMS_1_1TOPPASBase.html#a25fc0d0af7fa6b9118e460ff06bbd36cabc535fe2d17df8aab638823e6d6664e1">LS_NOTICE</a>, 
<a class="el" href="classOpenMS_1_1TOPPASBase.html#a25fc0d0af7fa6b9118e460ff06bbd36cacf5c525f6bc1621abe3e39f102272907">LS_WARNING</a>, 
<a class="el" href="classOpenMS_1_1TOPPASBase.html#a25fc0d0af7fa6b9118e460ff06bbd36caa0182d7118d1f75653d4b6a69fcb30cf">LS_ERROR</a>
 }</td></tr>
<tr class="memdesc:a25fc0d0af7fa6b9118e460ff06bbd36c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Log message states.  <a href="classOpenMS_1_1TOPPASBase.html#a25fc0d0af7fa6b9118e460ff06bbd36c">More...</a><br/></td></tr>
<tr class="separator:a25fc0d0af7fa6b9118e460ff06bbd36c"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pro-slots"></a>
Protected Slots</h2></td></tr>
<tr class="memitem:ac05247c60977ff8e8674fef3132618c3"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#ac05247c60977ff8e8674fef3132618c3">updateMenu</a> ()</td></tr>
<tr class="memdesc:ac05247c60977ff8e8674fef3132618c3"><td class="mdescLeft">&#160;</td><td class="mdescRight">enable/disable menu entries depending on the current state  <a href="#ac05247c60977ff8e8674fef3132618c3">More...</a><br/></td></tr>
<tr class="separator:ac05247c60977ff8e8674fef3132618c3"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a49eff2b09cb070797e67ed81eb0581d4"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a49eff2b09cb070797e67ed81eb0581d4">showAsWindow_</a> (<a class="el" href="classOpenMS_1_1TOPPASWidget.html">TOPPASWidget</a> *sw, const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;caption, const int special_id=-1)</td></tr>
<tr class="memdesc:a49eff2b09cb070797e67ed81eb0581d4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Shows the widget as window in the workspace (the special_id is only used for the first untitled widget (to be able to auto-close it later)  <a href="#a49eff2b09cb070797e67ed81eb0581d4">More...</a><br/></td></tr>
<tr class="separator:a49eff2b09cb070797e67ed81eb0581d4"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a920a42d633d432b8c5eae48a8167d752"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a920a42d633d432b8c5eae48a8167d752">insertNewVertex_</a> (<a class="el" href="classdouble.html">double</a> x, <a class="el" href="classdouble.html">double</a> y, QTreeWidgetItem *item=0)</td></tr>
<tr class="memdesc:a920a42d633d432b8c5eae48a8167d752"><td class="mdescLeft">&#160;</td><td class="mdescRight">Inserts a new TOPP tool in the current window at (x,y)  <a href="#a920a42d633d432b8c5eae48a8167d752">More...</a><br/></td></tr>
<tr class="separator:a920a42d633d432b8c5eae48a8167d752"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a09010127ab044b25bfab594c863cb30a"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a09010127ab044b25bfab594c863cb30a">insertNewVertexInCenter_</a> (QTreeWidgetItem *item)</td></tr>
<tr class="memdesc:a09010127ab044b25bfab594c863cb30a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Inserts the <code>item</code> in the middle of the current window.  <a href="#a09010127ab044b25bfab594c863cb30a">More...</a><br/></td></tr>
<tr class="separator:a09010127ab044b25bfab594c863cb30a"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a913432d621fa5615f484022beb187cb9"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a913432d621fa5615f484022beb187cb9">downloadTOPPASfromHomepage_</a> (const QUrl &amp;url)</td></tr>
<tr class="memdesc:a913432d621fa5615f484022beb187cb9"><td class="mdescLeft">&#160;</td><td class="mdescRight">triggered when user clicks a link - if it ends in .TOPPAS we're done  <a href="#a913432d621fa5615f484022beb187cb9">More...</a><br/></td></tr>
<tr class="separator:a913432d621fa5615f484022beb187cb9"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a958f0ed6befa5fcb2afe3228b0b1680a"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a958f0ed6befa5fcb2afe3228b0b1680a">toppasFileDownloaded_</a> (QNetworkReply *r)</td></tr>
<tr class="memdesc:a958f0ed6befa5fcb2afe3228b0b1680a"><td class="mdescLeft">&#160;</td><td class="mdescRight">triggered when download of .toppas file is finished, so we can store &amp; open it  <a href="#a958f0ed6befa5fcb2afe3228b0b1680a">More...</a><br/></td></tr>
<tr class="separator:a958f0ed6befa5fcb2afe3228b0b1680a"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a4c0ca2533e573937f23715b2fb2beb72"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a4c0ca2533e573937f23715b2fb2beb72">descriptionUpdated_</a> ()</td></tr>
<tr class="memdesc:a4c0ca2533e573937f23715b2fb2beb72"><td class="mdescLeft">&#160;</td><td class="mdescRight">user edited the workflow description  <a href="#a4c0ca2533e573937f23715b2fb2beb72">More...</a><br/></td></tr>
<tr class="separator:a4c0ca2533e573937f23715b2fb2beb72"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr><td colspan="2"><div class="groupHeader">Tab bar slots</div></td></tr>
<tr class="memitem:ad63103547742582c0a8c2f740c0ebe2a"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#ad63103547742582c0a8c2f740c0ebe2a">closeByTab</a> (int id)</td></tr>
<tr class="memdesc:ad63103547742582c0a8c2f740c0ebe2a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Closes the window corresponding to the data of the tab with identifier <code>id</code>.  <a href="#ad63103547742582c0a8c2f740c0ebe2a">More...</a><br/></td></tr>
<tr class="separator:ad63103547742582c0a8c2f740c0ebe2a"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ab74190be2e6728756a5238cef1f48b34"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#ab74190be2e6728756a5238cef1f48b34">focusByTab</a> (int id)</td></tr>
<tr class="memdesc:ab74190be2e6728756a5238cef1f48b34"><td class="mdescLeft">&#160;</td><td class="mdescRight">Raises the window corresponding to the data of the tab with identifier <code>id</code>.  <a href="#ab74190be2e6728756a5238cef1f48b34">More...</a><br/></td></tr>
<tr class="separator:ab74190be2e6728756a5238cef1f48b34"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pro-methods"></a>
Protected Member Functions</h2></td></tr>
<tr class="memitem:a2641a121447802c6303d7841740d0560"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1TOPPASWidget.html">TOPPASWidget</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a2641a121447802c6303d7841740d0560">window_</a> (int id) const </td></tr>
<tr class="memdesc:a2641a121447802c6303d7841740d0560"><td class="mdescLeft">&#160;</td><td class="mdescRight">returns the window with id <code>id</code>  <a href="#a2641a121447802c6303d7841740d0560">More...</a><br/></td></tr>
<tr class="separator:a2641a121447802c6303d7841740d0560"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:afd455e46d2145ebb46704df56311c330"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1TOPPASWidget.html">TOPPASWidget</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#afd455e46d2145ebb46704df56311c330">activeWindow_</a> () const </td></tr>
<tr class="memdesc:afd455e46d2145ebb46704df56311c330"><td class="mdescLeft">&#160;</td><td class="mdescRight">returns a pointer to the active <a class="el" href="classOpenMS_1_1TOPPASWidget.html" title="Widget visualizing and allowing to edit TOPP pipelines. ">TOPPASWidget</a> (0 if none is active)  <a href="#afd455e46d2145ebb46704df56311c330">More...</a><br/></td></tr>
<tr class="separator:afd455e46d2145ebb46704df56311c330"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:abbbece6cdb8abfa381ec1c4c913b376c"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#abbbece6cdb8abfa381ec1c4c913b376c">showLogMessage_</a> (<a class="el" href="classOpenMS_1_1TOPPASBase.html#a25fc0d0af7fa6b9118e460ff06bbd36c">LogState</a> state, const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;heading, const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;body)</td></tr>
<tr class="memdesc:abbbece6cdb8abfa381ec1c4c913b376c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Shows a log message in the log_ window.  <a href="#abbbece6cdb8abfa381ec1c4c913b376c">More...</a><br/></td></tr>
<tr class="separator:abbbece6cdb8abfa381ec1c4c913b376c"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr><td colspan="2"><div class="groupHeader">reimplemented Qt events</div></td></tr>
<tr class="memitem:a5de2bd09256045c0b96e5a0be780fa85"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a5de2bd09256045c0b96e5a0be780fa85">closeEvent</a> (QCloseEvent *event)</td></tr>
<tr class="separator:a5de2bd09256045c0b96e5a0be780fa85"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a9e53392568d47bcb31ccbde9917efb0c"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a9e53392568d47bcb31ccbde9917efb0c">keyPressEvent</a> (QKeyEvent *e)</td></tr>
<tr class="separator:a9e53392568d47bcb31ccbde9917efb0c"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pro_methods_classOpenMS_1_1DefaultParamHandler"><td colspan="2" onclick="javascript:toggleInherit('pro_methods_classOpenMS_1_1DefaultParamHandler')"><img src="closed.png" alt="-"/>&#160;Protected Member Functions inherited from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td></tr>
<tr class="memitem:a776f7572fc4f466e9527ca233471920d inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a776f7572fc4f466e9527ca233471920d">updateMembers_</a> ()</td></tr>
<tr class="memdesc:a776f7572fc4f466e9527ca233471920d inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">This method is used to update extra member variables at the end of the <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#abc8067511cfc949ae942ea2b08588f81" title="Sets the parameters. ">setParameters()</a> method.  <a href="#a776f7572fc4f466e9527ca233471920d">More...</a><br/></td></tr>
<tr class="separator:a776f7572fc4f466e9527ca233471920d inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a2802c591e6d7fd3fd9cc35f5e875d0ba inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a2802c591e6d7fd3fd9cc35f5e875d0ba">defaultsToParam_</a> ()</td></tr>
<tr class="memdesc:a2802c591e6d7fd3fd9cc35f5e875d0ba inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Updates the parameters after the defaults have been set in the constructor.  <a href="#a2802c591e6d7fd3fd9cc35f5e875d0ba">More...</a><br/></td></tr>
<tr class="separator:a2802c591e6d7fd3fd9cc35f5e875d0ba inherit pro_methods_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pro-attribs"></a>
Protected Attributes</h2></td></tr>
<tr class="memitem:a3c9ac638740799cd47c6c231000f99aa"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1TOPPASLogWindow.html">TOPPASLogWindow</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a3c9ac638740799cd47c6c231000f99aa">log_</a></td></tr>
<tr class="memdesc:a3c9ac638740799cd47c6c231000f99aa"><td class="mdescLeft">&#160;</td><td class="mdescRight">Log output window.  <a href="#a3c9ac638740799cd47c6c231000f99aa">More...</a><br/></td></tr>
<tr class="separator:a3c9ac638740799cd47c6c231000f99aa"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a163fa7d92ef3958a6d9e7b2515890a9b"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classQTextEdit.html">QTextEdit</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a163fa7d92ef3958a6d9e7b2515890a9b">desc_</a></td></tr>
<tr class="memdesc:a163fa7d92ef3958a6d9e7b2515890a9b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Workflow Description window.  <a href="#a163fa7d92ef3958a6d9e7b2515890a9b">More...</a><br/></td></tr>
<tr class="separator:a163fa7d92ef3958a6d9e7b2515890a9b"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a22247eef88789204058d31bb0e709252"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classQWorkspace.html">QWorkspace</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a22247eef88789204058d31bb0e709252">ws_</a></td></tr>
<tr class="memdesc:a22247eef88789204058d31bb0e709252"><td class="mdescLeft">&#160;</td><td class="mdescRight">Main workspace.  <a href="#a22247eef88789204058d31bb0e709252">More...</a><br/></td></tr>
<tr class="separator:a22247eef88789204058d31bb0e709252"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a58381c7965604a722ecb62ffa5e345ab"><td class="memItemLeft" align="right" valign="top">QWebView *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a58381c7965604a722ecb62ffa5e345ab">webview_</a></td></tr>
<tr class="memdesc:a58381c7965604a722ecb62ffa5e345ab"><td class="mdescLeft">&#160;</td><td class="mdescRight"><a class="el" href="namespaceOpenMS.html" title="Main OpenMS namespace. ">OpenMS</a> homepage workflow browser.  <a href="#a58381c7965604a722ecb62ffa5e345ab">More...</a><br/></td></tr>
<tr class="separator:a58381c7965604a722ecb62ffa5e345ab"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a3f41db0298411725631a9f1aa8aad1c4"><td class="memItemLeft" align="right" valign="top">QNetworkAccessManager *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a3f41db0298411725631a9f1aa8aad1c4">network_manager_</a></td></tr>
<tr class="memdesc:a3f41db0298411725631a9f1aa8aad1c4"><td class="mdescLeft">&#160;</td><td class="mdescRight">download .toppas files from homepage  <a href="#a3f41db0298411725631a9f1aa8aad1c4">More...</a><br/></td></tr>
<tr class="separator:a3f41db0298411725631a9f1aa8aad1c4"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a6ff72b84ff2b11f24b3c4476b5f2043e"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1TOPPASTabBar.html">TOPPASTabBar</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a6ff72b84ff2b11f24b3c4476b5f2043e">tab_bar_</a></td></tr>
<tr class="memdesc:a6ff72b84ff2b11f24b3c4476b5f2043e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Tab bar. The address of the corresponding window to a tab is stored as an int in tabData()  <a href="#a6ff72b84ff2b11f24b3c4476b5f2043e">More...</a><br/></td></tr>
<tr class="separator:a6ff72b84ff2b11f24b3c4476b5f2043e"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a073586e47ea2b5c6d8970aba99a01fb6"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classQTreeWidget.html">QTreeWidget</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a073586e47ea2b5c6d8970aba99a01fb6">tools_tree_view_</a></td></tr>
<tr class="memdesc:a073586e47ea2b5c6d8970aba99a01fb6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Tree view of all available TOPP tools.  <a href="#a073586e47ea2b5c6d8970aba99a01fb6">More...</a><br/></td></tr>
<tr class="separator:a073586e47ea2b5c6d8970aba99a01fb6"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a45bb66cc3051da8f8cad089e5ea2867a"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classQListWidget.html">QListWidget</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a45bb66cc3051da8f8cad089e5ea2867a">blocks_list_</a></td></tr>
<tr class="memdesc:a45bb66cc3051da8f8cad089e5ea2867a"><td class="mdescLeft">&#160;</td><td class="mdescRight">List of ready analysis pipelines.  <a href="#a45bb66cc3051da8f8cad089e5ea2867a">More...</a><br/></td></tr>
<tr class="separator:a45bb66cc3051da8f8cad089e5ea2867a"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ad7e2bb620199713343abf73d1f56fb78"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#ad7e2bb620199713343abf73d1f56fb78">current_path_</a></td></tr>
<tr class="separator:ad7e2bb620199713343abf73d1f56fb78"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ab563271358980127db4f8704bcca1dd5"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#ab563271358980127db4f8704bcca1dd5">tmp_path_</a></td></tr>
<tr class="memdesc:ab563271358980127db4f8704bcca1dd5"><td class="mdescLeft">&#160;</td><td class="mdescRight">The path for temporary files.  <a href="#ab563271358980127db4f8704bcca1dd5">More...</a><br/></td></tr>
<tr class="separator:ab563271358980127db4f8704bcca1dd5"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aeeaa26459435ff477cb985b6df1a4dda"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1TOPPASScene.html">TOPPASScene</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#aeeaa26459435ff477cb985b6df1a4dda">clipboard_scene_</a></td></tr>
<tr class="memdesc:aeeaa26459435ff477cb985b6df1a4dda"><td class="mdescLeft">&#160;</td><td class="mdescRight">The clipboard.  <a href="#aeeaa26459435ff477cb985b6df1a4dda">More...</a><br/></td></tr>
<tr class="separator:aeeaa26459435ff477cb985b6df1a4dda"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr><td colspan="2"><div class="groupHeader">Toolbar</div></td></tr>
<tr class="memitem:ac95bf715314bd478482ad36021db3e7c"><td class="memItemLeft" align="right" valign="top">QToolBar *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#ac95bf715314bd478482ad36021db3e7c">tool_bar_</a></td></tr>
<tr class="separator:ac95bf715314bd478482ad36021db3e7c"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr><td colspan="2"><div class="groupHeader">Status bar</div></td></tr>
<tr class="memitem:abc995e7e5fefa1e3daebfbeff7b4bde8"><td class="memItemLeft" align="right" valign="top">QLabel *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#abc995e7e5fefa1e3daebfbeff7b4bde8">message_label_</a></td></tr>
<tr class="memdesc:abc995e7e5fefa1e3daebfbeff7b4bde8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Label for messages in the status bar.  <a href="#abc995e7e5fefa1e3daebfbeff7b4bde8">More...</a><br/></td></tr>
<tr class="separator:abc995e7e5fefa1e3daebfbeff7b4bde8"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pro_attribs_classOpenMS_1_1DefaultParamHandler"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classOpenMS_1_1DefaultParamHandler')"><img src="closed.png" alt="-"/>&#160;Protected Attributes inherited from <a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td></tr>
<tr class="memitem:a28c73e623c63a4fe3bfceb1ae8274f39 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Param.html">Param</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a28c73e623c63a4fe3bfceb1ae8274f39">param_</a></td></tr>
<tr class="memdesc:a28c73e623c63a4fe3bfceb1ae8274f39 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Container for current parameters.  <a href="#a28c73e623c63a4fe3bfceb1ae8274f39">More...</a><br/></td></tr>
<tr class="separator:a28c73e623c63a4fe3bfceb1ae8274f39 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a761b1937850c141d0c6fff0e4d633a04 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Param.html">Param</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a761b1937850c141d0c6fff0e4d633a04">defaults_</a></td></tr>
<tr class="memdesc:a761b1937850c141d0c6fff0e4d633a04 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Container for default parameters. This member should be filled in the constructor of derived classes!  <a href="#a761b1937850c141d0c6fff0e4d633a04">More...</a><br/></td></tr>
<tr class="separator:a761b1937850c141d0c6fff0e4d633a04 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ac4b0e20bc59c7a5afe016c69067e428c inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">std::vector&lt; <a class="el" href="classOpenMS_1_1String.html">String</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#ac4b0e20bc59c7a5afe016c69067e428c">subsections_</a></td></tr>
<tr class="memdesc:ac4b0e20bc59c7a5afe016c69067e428c inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Container for registered subsections. This member should be filled in the constructor of derived classes!  <a href="#ac4b0e20bc59c7a5afe016c69067e428c">More...</a><br/></td></tr>
<tr class="separator:ac4b0e20bc59c7a5afe016c69067e428c inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a5a51f3f150b09068256195e934339a19 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a5a51f3f150b09068256195e934339a19">error_name_</a></td></tr>
<tr class="memdesc:a5a51f3f150b09068256195e934339a19 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name that is displayed in error messages during the parameter checking.  <a href="#a5a51f3f150b09068256195e934339a19">More...</a><br/></td></tr>
<tr class="separator:a5a51f3f150b09068256195e934339a19 inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a7c3b265b697a57615da5cd3274780efd inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a7c3b265b697a57615da5cd3274780efd">check_defaults_</a></td></tr>
<tr class="memdesc:a7c3b265b697a57615da5cd3274780efd inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">If this member is set to false no checking if parameters in done;.  <a href="#a7c3b265b697a57615da5cd3274780efd">More...</a><br/></td></tr>
<tr class="separator:a7c3b265b697a57615da5cd3274780efd inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aba444910e4fccb93f91bf7ab135f508a inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html#aba444910e4fccb93f91bf7ab135f508a">warn_empty_defaults_</a></td></tr>
<tr class="memdesc:aba444910e4fccb93f91bf7ab135f508a inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="mdescLeft">&#160;</td><td class="mdescRight">If this member is set to false no warning is emitted when defaults are empty;.  <a href="#aba444910e4fccb93f91bf7ab135f508a">More...</a><br/></td></tr>
<tr class="separator:aba444910e4fccb93f91bf7ab135f508a inherit pro_attribs_classOpenMS_1_1DefaultParamHandler"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pro-static-attribs"></a>
Static Protected Attributes</h2></td></tr>
<tr class="memitem:a37500605ee84c407e1299aeecbab28cb"><td class="memItemLeft" align="right" valign="top">static int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a37500605ee84c407e1299aeecbab28cb">node_offset_</a> = 0</td></tr>
<tr class="memdesc:a37500605ee84c407e1299aeecbab28cb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Offset counter for new inserted nodes (to avoid invisible stacking)  <a href="#a37500605ee84c407e1299aeecbab28cb">More...</a><br/></td></tr>
<tr class="separator:a37500605ee84c407e1299aeecbab28cb"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aa49f404e339e258b5cb76de7ac9fc5cb"><td class="memItemLeft" align="right" valign="top">static qreal&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html#aa49f404e339e258b5cb76de7ac9fc5cb">z_value_</a> = 42.0</td></tr>
<tr class="memdesc:aa49f404e339e258b5cb76de7ac9fc5cb"><td class="mdescLeft">&#160;</td><td class="mdescRight">z-value counter for new inserted nodes (new nodes should be on top)  <a href="#aa49f404e339e258b5cb76de7ac9fc5cb">More...</a><br/></td></tr>
<tr class="separator:aa49f404e339e258b5cb76de7ac9fc5cb"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table>
<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>Main window of the TOPPAS tool. </p>
</div><h2 class="groupheader">Member Enumeration Documentation</h2>
<a class="anchor" id="a25fc0d0af7fa6b9118e460ff06bbd36c"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
  <tr>
  <td class="mlabels-left">
      <table class="memname">
        <tr>
          <td class="memname">enum <a class="el" href="classOpenMS_1_1TOPPASBase.html#a25fc0d0af7fa6b9118e460ff06bbd36c">LogState</a></td>
        </tr>
      </table>
  </td>
  <td class="mlabels-right">
<span class="mlabels"><span class="mlabel">protected</span></span>  </td>
  </tr>
</table>
</div><div class="memdoc">

<p>Log message states. </p>
<table class="fieldtable">
<tr><th colspan="2">Enumerator</th></tr><tr><td class="fieldname"><em><a class="anchor" id="a25fc0d0af7fa6b9118e460ff06bbd36cabc535fe2d17df8aab638823e6d6664e1"></a>LS_NOTICE</em>&nbsp;</td><td class="fielddoc">
<p>Notice. </p>
</td></tr>
<tr><td class="fieldname"><em><a class="anchor" id="a25fc0d0af7fa6b9118e460ff06bbd36cacf5c525f6bc1621abe3e39f102272907"></a>LS_WARNING</em>&nbsp;</td><td class="fielddoc">
<p>Warning. </p>
</td></tr>
<tr><td class="fieldname"><em><a class="anchor" id="a25fc0d0af7fa6b9118e460ff06bbd36caa0182d7118d1f75653d4b6a69fcb30cf"></a>LS_ERROR</em>&nbsp;</td><td class="fielddoc">
<p>Fatal error. </p>
</td></tr>
</table>

</div>
</div>
<h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
<a class="anchor" id="a0d556823d1bc2537b662aa979b184911"></a>
<div class="memitem">
<div class="memproto">
      <table class="memname">
        <tr>
          <td class="memname"><a class="el" href="classOpenMS_1_1TOPPASBase.html">TOPPASBase</a> </td>
          <td>(</td>
          <td class="paramtype"><a class="el" href="classQWidget.html">QWidget</a> *&#160;</td>
          <td class="paramname"><em>parent</em> = <code>0</code></td><td>)</td>
          <td></td>
        </tr>
      </table>
</div><div class="memdoc">

<p>Constructor. </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASBase.html#ae6d95c909402024df0f7a78d69a7c424">TOPPASBase::abortPipeline()</a>, <a class="el" href="classOpenMS_1_1TOPPASTabBar.html#a724e639a4d5c2a3b97b741e371b69e2e">TOPPASTabBar::addTab()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ad63103547742582c0a8c2f740c0ebe2a">TOPPASBase::closeByTab()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ab2ff17b940ae7aca4827d832ceeaeda4">TOPPASBase::closeFile()</a>, <a class="el" href="classOpenMS_1_1StringList.html#a5f86b59b547048311dd50df5fb6d3bb5">StringList::create()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a9f3866e4cb832062742a80e5a5c12685">TOPPASBase::createTOPPToolsTreeWidget()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ad7e2bb620199713343abf73d1f56fb78">TOPPASBase::current_path_</a>, <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a761b1937850c141d0c6fff0e4d633a04">DefaultParamHandler::defaults_</a>, <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a2802c591e6d7fd3fd9cc35f5e875d0ba">DefaultParamHandler::defaultsToParam_()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a163fa7d92ef3958a6d9e7b2515890a9b">TOPPASBase::desc_</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a4c0ca2533e573937f23715b2fb2beb72">TOPPASBase::descriptionUpdated_()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a913432d621fa5615f484022beb187cb9">TOPPASBase::downloadTOPPASfromHomepage_()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ac260355ee5d45ae2229fad3fab3bf42f">TOPPASBase::exportAsImage()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ab74190be2e6728756a5238cef1f48b34">TOPPASBase::focusByTab()</a>, <a class="el" href="classOpenMS_1_1File.html#ab11446ef6c3515f332a0ec20ebdffbcd">File::getTempDirectory()</a>, <a class="el" href="classOpenMS_1_1File.html#ae69efd47ed7b07d8b5bb4b8c0925b2f0">File::getUniqueName()</a>, <a class="el" href="classOpenMS_1_1Param.html#abd0f5571675ec99e1aa647b39e2a8711">Param::getValue()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#aac817d9927b9d971b720a9e34abb66ca">TOPPASBase::includePipeline()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a09010127ab044b25bfab594c863cb30a">TOPPASBase::insertNewVertexInCenter_()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ae344ec338cc139cf991afe7edf99268b">TOPPASBase::loadPipelineResourceFile()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a4eecbb3c7b39a36a9f365e4dc2a89387">TOPPASBase::loadPreferences()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a3c9ac638740799cd47c6c231000f99aa">TOPPASBase::log_</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#abc995e7e5fefa1e3daebfbeff7b4bde8">TOPPASBase::message_label_</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a3f41db0298411725631a9f1aa8aad1c4">TOPPASBase::network_manager_</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a61037f7b27b0427d3ff2160ff4199d68">TOPPASBase::newPipeline()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a208dfd62de31507d975da04c318d0e80">TOPPASBase::openExampleDialog()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a97b77d0916ad8455109c30f8864b5407">TOPPASBase::openFileDialog()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ad6388f13dad5f436779fe675e2d4981c">TOPPASBase::openOnlinePipelineRepository()</a>, <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a28c73e623c63a4fe3bfceb1ae8274f39">DefaultParamHandler::param_</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a18a56e69770627550c587e6437d3f6a3">TOPPASBase::refreshParameters()</a>, <a class="el" href="classOpenMS_1_1TOPPASTabBar.html#a5d495d68c394676182cd899173d605e4">TOPPASTabBar::removeId()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a4fe7e762cb5bf01fefb8e1a5d0071e1a">TOPPASBase::runPipeline()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ae1ce47a5e7d3b7b35354920271083d25">TOPPASBase::saveCurrentPipelineAs()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a7134dba5f240779e2f9796ceaa1bdb2c">TOPPASBase::savePipeline()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#acc9e48279d18b4b5caa6823bee22f8d8">TOPPASBase::savePipelineResourceFile()</a>, <a class="el" href="classOpenMS_1_1Param.html#a10933782584a46cded91c40574027ee2">Param::setValidStrings()</a>, <a class="el" href="classOpenMS_1_1Param.html#a432099944e11263aa20aaf8ea1389790">Param::setValue()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ac63a90a3b880d5e9cfd47b54b336be8b">TOPPASBase::showAboutDialog()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ab15d57b00f5a06ac4a9e393036212829">TOPPASBase::showURL()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a6ff72b84ff2b11f24b3c4476b5f2043e">TOPPASBase::tab_bar_</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ab563271358980127db4f8704bcca1dd5">TOPPASBase::tmp_path_</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a073586e47ea2b5c6d8970aba99a01fb6">TOPPASBase::tools_tree_view_</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a958f0ed6befa5fcb2afe3228b0b1680a">TOPPASBase::toppasFileDownloaded_()</a>, <a class="el" href="classOpenMS_1_1String.html#ab9244483ff324b0dbd3e89d03ee63eb2">String::toQString()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ac05247c60977ff8e8674fef3132618c3">TOPPASBase::updateMenu()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#af8468d886fa3eea83c3554d63c1bdd8c">TOPPASBase::updateTabBar()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a58381c7965604a722ecb62ffa5e345ab">TOPPASBase::webview_</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#a22247eef88789204058d31bb0e709252">TOPPASBase::ws_</a>.</p>

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          <td>(</td>
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<p>Destructor. </p>

<p>References <a class="el" href="classOpenMS_1_1File.html#ab11446ef6c3515f332a0ec20ebdffbcd">File::getTempDirectory()</a>, <a class="el" href="classOpenMS_1_1File.html#a04f4dd9a03738bcff02e6622848e5d2b">File::removeDirRecursively()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a23668b43705781c1cd284bda6ab40abc">TOPPASBase::savePreferences()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#ab563271358980127db4f8704bcca1dd5">TOPPASBase::tmp_path_</a>.</p>

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<h2 class="groupheader">Member Function Documentation</h2>
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          <td class="memname">void abortPipeline </td>
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<p>Terminates the current pipeline. </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASScene.html#ae6d95c909402024df0f7a78d69a7c424">TOPPASScene::abortPipeline()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#afd455e46d2145ebb46704df56311c330">TOPPASBase::activeWindow_()</a>, <a class="el" href="classOpenMS_1_1TOPPASWidget.html#a862b30cc19877af17d727d9d41fe1734">TOPPASWidget::getScene()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#ac05247c60977ff8e8674fef3132618c3">TOPPASBase::updateMenu()</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0d556823d1bc2537b662aa979b184911">TOPPASBase::TOPPASBase()</a>.</p>

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          <td class="memname"><a class="el" href="classOpenMS_1_1TOPPASWidget.html">TOPPASWidget</a> * activeWindow_ </td>
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          <td> const</td>
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<p>returns a pointer to the active <a class="el" href="classOpenMS_1_1TOPPASWidget.html" title="Widget visualizing and allowing to edit TOPP pipelines. ">TOPPASWidget</a> (0 if none is active) </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASBase.html#a22247eef88789204058d31bb0e709252">TOPPASBase::ws_</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#ae6d95c909402024df0f7a78d69a7c424">TOPPASBase::abortPipeline()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a582b9d08f4ab872a48b3c02157b98593">TOPPASBase::addTOPPASFile()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a4c0ca2533e573937f23715b2fb2beb72">TOPPASBase::descriptionUpdated_()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ac260355ee5d45ae2229fad3fab3bf42f">TOPPASBase::exportAsImage()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a920a42d633d432b8c5eae48a8167d752">TOPPASBase::insertNewVertex_()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a09010127ab044b25bfab594c863cb30a">TOPPASBase::insertNewVertexInCenter_()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a9e53392568d47bcb31ccbde9917efb0c">TOPPASBase::keyPressEvent()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ae344ec338cc139cf991afe7edf99268b">TOPPASBase::loadPipelineResourceFile()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a18a56e69770627550c587e6437d3f6a3">TOPPASBase::refreshParameters()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a4fe7e762cb5bf01fefb8e1a5d0071e1a">TOPPASBase::runPipeline()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ae1ce47a5e7d3b7b35354920271083d25">TOPPASBase::saveCurrentPipelineAs()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a7134dba5f240779e2f9796ceaa1bdb2c">TOPPASBase::savePipeline()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#acc9e48279d18b4b5caa6823bee22f8d8">TOPPASBase::savePipelineResourceFile()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#ac05247c60977ff8e8674fef3132618c3">TOPPASBase::updateMenu()</a>.</p>

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          <td class="paramtype">const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;&#160;</td>
          <td class="paramname"><em>file_name</em>, </td>
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          <td class="paramtype">bool&#160;</td>
          <td class="paramname"><em>in_new_window</em> = <code>true</code>&#160;</td>
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<p>opens the file in a new window </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASBase.html#afd455e46d2145ebb46704df56311c330">TOPPASBase::activeWindow_()</a>, <a class="el" href="classOpenMS_1_1File.html#a6487771c96fec9db032960c91864884e">File::basename()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ad63103547742582c0a8c2f740c0ebe2a">TOPPASBase::closeByTab()</a>, <a class="el" href="classOpenMS_1_1TOPPASWidget.html#a862b30cc19877af17d727d9d41fe1734">TOPPASWidget::getScene()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a8229ecf286bd09d8e6d56a34b0512d23">TOPPASBase::IDINITIALUNTITLED</a>, <a class="el" href="classOpenMS_1_1TOPPASScene.html#a5bdb442f0d9b534e1d14b0d2c5535446">TOPPASScene::include()</a>, <a class="el" href="classOpenMS_1_1TOPPASScene.html#adc7dfd0cba9047239825537cf285a399">TOPPASScene::load()</a>, <a class="el" href="LogStream_8h.html#aced66975c154ea0e2a8ec3bc818b4e08">LOG_ERROR</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a1c9368295d712e9f38580b6d20e1bebc">TOPPASBase::outputVertexFinished()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a49eff2b09cb070797e67ed81eb0581d4">TOPPASBase::showAsWindow_()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ab563271358980127db4f8704bcca1dd5">TOPPASBase::tmp_path_</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#af215168f972a65183fa5819430870d4e">TOPPASBase::toolCrashed()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#aec04230b69cc4bcb9edbc41b80baa55f">TOPPASBase::toolFailed()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a5999feb381958474518086dafd44c99e">TOPPASBase::toolFinished()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ad313b7a2f2e778ba2f91c2fa0447f4ea">TOPPASBase::toolStarted()</a>, <a class="el" href="classOpenMS_1_1String.html#ab9244483ff324b0dbd3e89d03ee63eb2">String::toQString()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ae4b86c5e07ea95506d6d30741efa590d">TOPPASBase::updateTOPPOutputLog()</a>, <a class="el" href="classOpenMS_1_1TOPPASScene.html#a2f76b95f9c2d071288bc642b61213908">TOPPASScene::verticesBegin()</a>, <a class="el" href="classOpenMS_1_1TOPPASScene.html#a8d1e11dab1f28a40da6ac7c56bf03398">TOPPASScene::verticesEnd()</a>, <a class="el" href="classOpenMS_1_1TOPPASScene.html#a5c714ff8c21c7dcf1629ef957a92625f">TOPPASScene::wasChanged()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a2641a121447802c6303d7841740d0560">TOPPASBase::window_()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#a22247eef88789204058d31bb0e709252">TOPPASBase::ws_</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#aac817d9927b9d971b720a9e34abb66ca">TOPPASBase::includePipeline()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#af269aadf469e6fa54fe6e9d5aee430d9">TOPPASBase::loadFiles()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a208dfd62de31507d975da04c318d0e80">TOPPASBase::openExampleDialog()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a97b77d0916ad8455109c30f8864b5407">TOPPASBase::openFileDialog()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a1925db9db81391333058c8851fa3efd9">TOPPASBase::openToppasFile()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a49eff2b09cb070797e67ed81eb0581d4">TOPPASBase::showAsWindow_()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#a958f0ed6befa5fcb2afe3228b0b1680a">TOPPASBase::toppasFileDownloaded_()</a>.</p>

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<p>Closes the window corresponding to the data of the tab with identifier <code>id</code>. </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASTabBar.html#a5d495d68c394676182cd899173d605e4">TOPPASTabBar::removeId()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a6ff72b84ff2b11f24b3c4476b5f2043e">TOPPASBase::tab_bar_</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ac05247c60977ff8e8674fef3132618c3">TOPPASBase::updateMenu()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#a2641a121447802c6303d7841740d0560">TOPPASBase::window_()</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a582b9d08f4ab872a48b3c02157b98593">TOPPASBase::addTOPPASFile()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0d556823d1bc2537b662aa979b184911">TOPPASBase::TOPPASBase()</a>.</p>

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<p>References <a class="el" href="classOpenMS_1_1TOPPASBase.html#a22247eef88789204058d31bb0e709252">TOPPASBase::ws_</a>.</p>

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<p>closes the active window </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASBase.html#ac05247c60977ff8e8674fef3132618c3">TOPPASBase::updateMenu()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#a22247eef88789204058d31bb0e709252">TOPPASBase::ws_</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0d556823d1bc2537b662aa979b184911">TOPPASBase::TOPPASBase()</a>.</p>

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          <td class="memname"><a class="el" href="classOpenMS_1_1TOPPASTreeView.html">TOPPASTreeView</a> * createTOPPToolsTreeWidget </td>
          <td>(</td>
          <td class="paramtype"><a class="el" href="classQWidget.html">QWidget</a> *&#160;</td>
          <td class="paramname"><em>parent_widget</em> = <code>0</code></td><td>)</td>
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<p>Creates and fills a tree widget with all available tools. </p>

<p>References <a class="el" href="classOpenMS_1_1ToolHandler.html#a9f369f7dd9901287c469b56fc37275d1">ToolHandler::getTOPPToolList()</a>, <a class="el" href="classOpenMS_1_1ToolHandler.html#a9254a59934d8da3434aa29dfa6105714">ToolHandler::getTypes()</a>, <a class="el" href="classOpenMS_1_1ToolHandler.html#abf8c473a29a4d421efaccec4e5c6892c">ToolHandler::getUtilList()</a>, and <a class="el" href="classOpenMS_1_1String.html#ab9244483ff324b0dbd3e89d03ee63eb2">String::toQString()</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0d556823d1bc2537b662aa979b184911">TOPPASBase::TOPPASBase()</a>.</p>

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<p>user edited the workflow description </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASBase.html#afd455e46d2145ebb46704df56311c330">TOPPASBase::activeWindow_()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a163fa7d92ef3958a6d9e7b2515890a9b">TOPPASBase::desc_</a>, <a class="el" href="classOpenMS_1_1TOPPASWidget.html#a862b30cc19877af17d727d9d41fe1734">TOPPASWidget::getScene()</a>, <a class="el" href="classOpenMS_1_1TOPPASScene.html#a4973165e2fb5a725c682121e3b93596d">TOPPASScene::setChanged()</a>, and <a class="el" href="classOpenMS_1_1TOPPASScene.html#a34533344428c931301a5f1c41eb99721">TOPPASScene::setDescription()</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0d556823d1bc2537b662aa979b184911">TOPPASBase::TOPPASBase()</a>.</p>

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          <td class="memname">void downloadTOPPASfromHomepage_ </td>
          <td>(</td>
          <td class="paramtype">const QUrl &amp;&#160;</td>
          <td class="paramname"><em>url</em></td><td>)</td>
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<p>triggered when user clicks a link - if it ends in .TOPPAS we're done </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASBase.html#a25fc0d0af7fa6b9118e460ff06bbd36cabc535fe2d17df8aab638823e6d6664e1">TOPPASBase::LS_NOTICE</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a3f41db0298411725631a9f1aa8aad1c4">TOPPASBase::network_manager_</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#abbbece6cdb8abfa381ec1c4c913b376c">TOPPASBase::showLogMessage_()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#a58381c7965604a722ecb62ffa5e345ab">TOPPASBase::webview_</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0d556823d1bc2537b662aa979b184911">TOPPASBase::TOPPASBase()</a>.</p>

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<p>exports the current pipeline as image </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASBase.html#afd455e46d2145ebb46704df56311c330">TOPPASBase::activeWindow_()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ad7e2bb620199713343abf73d1f56fb78">TOPPASBase::current_path_</a>, <a class="el" href="classOpenMS_1_1TOPPASWidget.html#a862b30cc19877af17d727d9d41fe1734">TOPPASWidget::getScene()</a>, <a class="el" href="classOpenMS_1_1TOPPASScene.html#a34533344428c931301a5f1c41eb99721">TOPPASScene::setDescription()</a>, and <a class="el" href="classOpenMS_1_1String.html#ab9244483ff324b0dbd3e89d03ee63eb2">String::toQString()</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0d556823d1bc2537b662aa979b184911">TOPPASBase::TOPPASBase()</a>.</p>

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          <td class="paramtype">int&#160;</td>
          <td class="paramname"><em>id</em></td><td>)</td>
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<p>Raises the window corresponding to the data of the tab with identifier <code>id</code>. </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASBase.html#a163fa7d92ef3958a6d9e7b2515890a9b">TOPPASBase::desc_</a>, <a class="el" href="classOpenMS_1_1TOPPASScene.html#a9479edb21dd0d3f81e0dc9f1953b90cd">TOPPASScene::getDescription()</a>, <a class="el" href="classOpenMS_1_1TOPPASWidget.html#a862b30cc19877af17d727d9d41fe1734">TOPPASWidget::getScene()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#a2641a121447802c6303d7841740d0560">TOPPASBase::window_()</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0d556823d1bc2537b662aa979b184911">TOPPASBase::TOPPASBase()</a>.</p>

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<p>shows the dialog for including another workflow in the currently opened one </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASBase.html#a582b9d08f4ab872a48b3c02157b98593">TOPPASBase::addTOPPASFile()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ad7e2bb620199713343abf73d1f56fb78">TOPPASBase::current_path_</a>, and <a class="el" href="classOpenMS_1_1String.html#ab9244483ff324b0dbd3e89d03ee63eb2">String::toQString()</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0d556823d1bc2537b662aa979b184911">TOPPASBase::TOPPASBase()</a>.</p>

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          <td>(</td>
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          <td class="paramname"><em>x</em>, </td>
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<p>Inserts a new TOPP tool in the current window at (x,y) </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASBase.html#afd455e46d2145ebb46704df56311c330">TOPPASBase::activeWindow_()</a>, <a class="el" href="classOpenMS_1_1TOPPASScene.html#a690e5df66806c916c80a3ac2cc68e9c5">TOPPASScene::addVertex()</a>, <a class="el" href="classOpenMS_1_1TOPPASScene.html#ac37e810aea5be895f3ccbdada67372c8">TOPPASScene::connectOutputVertexSignals()</a>, <a class="el" href="classOpenMS_1_1TOPPASScene.html#a6ec041e272db6aa3e2674e734b434c6c">TOPPASScene::connectToolVertexSignals()</a>, <a class="el" href="classOpenMS_1_1TOPPASScene.html#ad96be03296020c51e5196f74133628d1">TOPPASScene::connectVertexSignals()</a>, <a class="el" href="classOpenMS_1_1TOPPASWidget.html#a862b30cc19877af17d727d9d41fe1734">TOPPASWidget::getScene()</a>, <a class="el" href="classOpenMS_1_1TOPPASToolVertex.html#aec59d4dd96d01c2efb6d095f9bac2d8f">TOPPASToolVertex::isToolReady()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a1c9368295d712e9f38580b6d20e1bebc">TOPPASBase::outputVertexFinished()</a>, <a class="el" href="classOpenMS_1_1TOPPASScene.html#a4973165e2fb5a725c682121e3b93596d">TOPPASScene::setChanged()</a>, <a class="el" href="TOPPAS_8C.html#a92f8240588f059cb9152498c9d3a3e9d">tool_name</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#af215168f972a65183fa5819430870d4e">TOPPASBase::toolCrashed()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#aec04230b69cc4bcb9edbc41b80baa55f">TOPPASBase::toolFailed()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a5999feb381958474518086dafd44c99e">TOPPASBase::toolFinished()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a073586e47ea2b5c6d8970aba99a01fb6">TOPPASBase::tools_tree_view_</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ad313b7a2f2e778ba2f91c2fa0447f4ea">TOPPASBase::toolStarted()</a>, <a class="el" href="classOpenMS_1_1TOPPASScene.html#acd8d144e5dee3b237e53fa849bf92b2a">TOPPASScene::topoSort()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ae4b86c5e07ea95506d6d30741efa590d">TOPPASBase::updateTOPPOutputLog()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#aa49f404e339e258b5cb76de7ac9fc5cb">TOPPASBase::z_value_</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a09010127ab044b25bfab594c863cb30a">TOPPASBase::insertNewVertexInCenter_()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#a49eff2b09cb070797e67ed81eb0581d4">TOPPASBase::showAsWindow_()</a>.</p>

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          <td class="paramtype">QTreeWidgetItem *&#160;</td>
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<p>Inserts the <code>item</code> in the middle of the current window. </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASBase.html#afd455e46d2145ebb46704df56311c330">TOPPASBase::activeWindow_()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a920a42d633d432b8c5eae48a8167d752">TOPPASBase::insertNewVertex_()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a37500605ee84c407e1299aeecbab28cb">TOPPASBase::node_offset_</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#a073586e47ea2b5c6d8970aba99a01fb6">TOPPASBase::tools_tree_view_</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0d556823d1bc2537b662aa979b184911">TOPPASBase::TOPPASBase()</a>.</p>

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          <td>(</td>
          <td class="paramtype">QKeyEvent *&#160;</td>
          <td class="paramname"><em>e</em></td><td>)</td>
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<p>References <a class="el" href="classOpenMS_1_1TOPPASBase.html#afd455e46d2145ebb46704df56311c330">TOPPASBase::activeWindow_()</a>, <a class="el" href="classOpenMS_1_1TOPPASWidget.html#a862b30cc19877af17d727d9d41fe1734">TOPPASWidget::getScene()</a>, and <a class="el" href="classOpenMS_1_1TOPPASScene.html#a4fe7e762cb5bf01fefb8e1a5d0071e1a">TOPPASScene::runPipeline()</a>.</p>

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          <td>(</td>
          <td class="paramtype">const <a class="el" href="classOpenMS_1_1StringList.html">StringList</a> &amp;&#160;</td>
          <td class="paramname"><em>list</em>, </td>
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          <td class="paramtype">QSplashScreen *&#160;</td>
          <td class="paramname"><em>splash_screen</em>&#160;</td>
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<p>loads the files and updates the splash screen </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASBase.html#a582b9d08f4ab872a48b3c02157b98593">TOPPASBase::addTOPPASFile()</a>.</p>

<p>Referenced by <a class="el" href="TOPPAS_8C.html#a217dbf8b442f20279ea00b898af96f52">main()</a>.</p>

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          <td>(</td>
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<p>shows a file dialog for selecting the resource file to load </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASBase.html#afd455e46d2145ebb46704df56311c330">TOPPASBase::activeWindow_()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ad7e2bb620199713343abf73d1f56fb78">TOPPASBase::current_path_</a>, and <a class="el" href="classOpenMS_1_1String.html#ab9244483ff324b0dbd3e89d03ee63eb2">String::toQString()</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0d556823d1bc2537b662aa979b184911">TOPPASBase::TOPPASBase()</a>.</p>

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          <td>(</td>
          <td class="paramtype"><a class="el" href="classOpenMS_1_1TOPPASWidget.html">TOPPASWidget</a> *&#160;</td>
          <td class="paramname"><em>w</em>, </td>
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          <td class="paramtype">QString&#160;</td>
          <td class="paramname"><em>current_path</em>&#160;</td>
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<p>Loads and sets the resources of the <a class="el" href="classOpenMS_1_1TOPPASWidget.html" title="Widget visualizing and allowing to edit TOPP pipelines. ">TOPPASWidget</a>. </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASWidget.html#a862b30cc19877af17d727d9d41fe1734">TOPPASWidget::getScene()</a>, <a class="el" href="classOpenMS_1_1TOPPASResources.html#a83a3660ffab2523b6e05e589c51d84a6">TOPPASResources::load()</a>, and <a class="el" href="classOpenMS_1_1TOPPASScene.html#ad8893bf826aafb7e8d2bc3554d269a42">TOPPASScene::loadResources()</a>.</p>

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          <td>(</td>
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          <td class="paramname"><em>filename</em> = <code>&quot;&quot;</code></td><td>)</td>
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<p>Loads the preferences from the filename given. </p>
<p>If the filename is empty, the application name + ".ini" is used as filename </p>

<p>References <a class="el" href="classOpenMS_1_1File.html#a103bc592f26fed81f56f2f92b7ab5063">File::exists()</a>, <a class="el" href="classOpenMS_1_1Param.html#a1228c6f4950f49a2f819b48db40ee071">Param::exists()</a>, <a class="el" href="classOpenMS_1_1Param.html#abd0f5571675ec99e1aa647b39e2a8711">Param::getValue()</a>, <a class="el" href="classOpenMS_1_1VersionInfo.html#ad463592f1516b9e0fbf5431e324cdf1b">VersionInfo::getVersion()</a>, <a class="el" href="classOpenMS_1_1ParamXMLFile.html#a33d473d4424809f7699ff36c3db3c046">ParamXMLFile::load()</a>, <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a28c73e623c63a4fe3bfceb1ae8274f39">DefaultParamHandler::param_</a>, <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#abc8067511cfc949ae942ea2b08588f81">DefaultParamHandler::setParameters()</a>, <a class="el" href="classOpenMS_1_1Param.html#a432099944e11263aa20aaf8ea1389790">Param::setValue()</a>, and <a class="el" href="classOpenMS_1_1DataValue.html#a82e960f65e28ae6aba1271adbb83236e">DataValue::toString()</a>.</p>

<p>Referenced by <a class="el" href="TOPPAS_8C.html#a217dbf8b442f20279ea00b898af96f52">main()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0d556823d1bc2537b662aa979b184911">TOPPASBase::TOPPASBase()</a>.</p>

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          <td>(</td>
          <td class="paramtype">const int&#160;</td>
          <td class="paramname"><em>id</em> = <code>-1</code></td><td>)</td>
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<p>shows the dialog for creating a new file (pass IDINITIALUNTITLED as <code>id</code> if its the first call) </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASBase.html#a49eff2b09cb070797e67ed81eb0581d4">TOPPASBase::showAsWindow_()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ab563271358980127db4f8704bcca1dd5">TOPPASBase::tmp_path_</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#a22247eef88789204058d31bb0e709252">TOPPASBase::ws_</a>.</p>

<p>Referenced by <a class="el" href="TOPPAS_8C.html#a217dbf8b442f20279ea00b898af96f52">main()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0d556823d1bc2537b662aa979b184911">TOPPASBase::TOPPASBase()</a>.</p>

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<p>shows the dialog for opening example files </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASBase.html#a582b9d08f4ab872a48b3c02157b98593">TOPPASBase::addTOPPASFile()</a>, and <a class="el" href="classOpenMS_1_1File.html#a33b5eb4e51bc1302c000de5858bd48f2">File::getOpenMSDataPath()</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0d556823d1bc2537b662aa979b184911">TOPPASBase::TOPPASBase()</a>.</p>

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<p>shows the dialog for opening files </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASBase.html#a582b9d08f4ab872a48b3c02157b98593">TOPPASBase::addTOPPASFile()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ad7e2bb620199713343abf73d1f56fb78">TOPPASBase::current_path_</a>, and <a class="el" href="classOpenMS_1_1String.html#ab9244483ff324b0dbd3e89d03ee63eb2">String::toQString()</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0d556823d1bc2537b662aa979b184911">TOPPASBase::TOPPASBase()</a>.</p>

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<p>Open files in a new TOPPView instance. </p>

<p>References <a class="el" href="classOpenMS_1_1File.html#a103bc592f26fed81f56f2f92b7ab5063">File::exists()</a>, <a class="el" href="classOpenMS_1_1File.html#a8b10f3614a3aa4f29b8acd1e9b5dc6f1">File::findExecutable()</a>, and <a class="el" href="classOpenMS_1_1File.html#a2d480a015e100fb899f9c008b1f1a29a">File::getExecutablePath()</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a49eff2b09cb070797e67ed81eb0581d4">TOPPASBase::showAsWindow_()</a>.</p>

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<p>opens the <a class="el" href="namespaceOpenMS.html" title="Main OpenMS namespace. ">OpenMS</a> Homepage to download example workflows </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASBase.html#a58381c7965604a722ecb62ffa5e345ab">TOPPASBase::webview_</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0d556823d1bc2537b662aa979b184911">TOPPASBase::TOPPASBase()</a>.</p>

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<p>Opens a toppas file. </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASBase.html#a582b9d08f4ab872a48b3c02157b98593">TOPPASBase::addTOPPASFile()</a>.</p>

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<p>Called when a file was successfully written to an output vertex. </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASBase.html#a25fc0d0af7fa6b9118e460ff06bbd36cabc535fe2d17df8aab638823e6d6664e1">TOPPASBase::LS_NOTICE</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#abbbece6cdb8abfa381ec1c4c913b376c">TOPPASBase::showLogMessage_()</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a582b9d08f4ab872a48b3c02157b98593">TOPPASBase::addTOPPASFile()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#a920a42d633d432b8c5eae48a8167d752">TOPPASBase::insertNewVertex_()</a>.</p>

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<p>shows the preferences dialog </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASBase.html#a23668b43705781c1cd284bda6ab40abc">TOPPASBase::savePreferences()</a>.</p>

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<p>Refreshes the parameters of the TOPP tools of the current workflow and stores an updated workflow including the current parameters. </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASBase.html#afd455e46d2145ebb46704df56311c330">TOPPASBase::activeWindow_()</a>, <a class="el" href="classOpenMS_1_1File.html#a6487771c96fec9db032960c91864884e">File::basename()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ad7e2bb620199713343abf73d1f56fb78">TOPPASBase::current_path_</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#abc580cb500d458ddef9308feca871326">TOPPASBase::refreshPipelineParameters()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a6ff72b84ff2b11f24b3c4476b5f2043e">TOPPASBase::tab_bar_</a>, and <a class="el" href="classOpenMS_1_1String.html#ab9244483ff324b0dbd3e89d03ee63eb2">String::toQString()</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0d556823d1bc2537b662aa979b184911">TOPPASBase::TOPPASBase()</a>.</p>

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<p>Refreshes the TOPP tools parameters of the pipeline. </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASWidget.html#a862b30cc19877af17d727d9d41fe1734">TOPPASWidget::getScene()</a>, <a class="el" href="classOpenMS_1_1TOPPASScene.html#aa95480467440842c0fb80c8e325aa0d8">TOPPASScene::refreshParameters()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0c3d3da9c968a52089d602934ace3f28">TOPPASBase::savePipelineAs()</a>, <a class="el" href="classOpenMS_1_1TOPPASScene.html#a4973165e2fb5a725c682121e3b93596d">TOPPASScene::setChanged()</a>, <a class="el" href="classOpenMS_1_1TOPPASScene.html#a0963847e7748fbbad3036d73a5d219cda5748a51091a989de431a1d26de70c0ad">TOPPASScene::ST_REFRESH_CHANGEINVALID</a>, <a class="el" href="classOpenMS_1_1TOPPASScene.html#a0963847e7748fbbad3036d73a5d219cdaf41ff1b8ff6c33ff27767ff8fba44d0b">TOPPASScene::ST_REFRESH_NOCHANGE</a>, <a class="el" href="classOpenMS_1_1TOPPASScene.html#a0963847e7748fbbad3036d73a5d219cdaa2f5a4dee2c38e5e32d6ff3db60b9e0d">TOPPASScene::ST_REFRESH_REMAINSINVALID</a>, and <a class="el" href="classOpenMS_1_1TOPPASScene.html#ad77bd7e5a8b9c2fbf0c825684fdf35c8">TOPPASScene::updateEdgeColors()</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a18a56e69770627550c587e6437d3f6a3">TOPPASBase::refreshParameters()</a>.</p>

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<p>Runs the pipeline of the current window. </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASBase.html#afd455e46d2145ebb46704df56311c330">TOPPASBase::activeWindow_()</a>, <a class="el" href="classOpenMS_1_1TOPPASWidget.html#a862b30cc19877af17d727d9d41fe1734">TOPPASWidget::getScene()</a>, and <a class="el" href="classOpenMS_1_1TOPPASScene.html#a4fe7e762cb5bf01fefb8e1a5d0071e1a">TOPPASScene::runPipeline()</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0d556823d1bc2537b662aa979b184911">TOPPASBase::TOPPASBase()</a>.</p>

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<p>shows the dialog for saving the current file and updates the current tab caption </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASBase.html#afd455e46d2145ebb46704df56311c330">TOPPASBase::activeWindow_()</a>, <a class="el" href="classOpenMS_1_1File.html#a6487771c96fec9db032960c91864884e">File::basename()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ad7e2bb620199713343abf73d1f56fb78">TOPPASBase::current_path_</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0c3d3da9c968a52089d602934ace3f28">TOPPASBase::savePipelineAs()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a6ff72b84ff2b11f24b3c4476b5f2043e">TOPPASBase::tab_bar_</a>, and <a class="el" href="classOpenMS_1_1String.html#ab9244483ff324b0dbd3e89d03ee63eb2">String::toQString()</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0d556823d1bc2537b662aa979b184911">TOPPASBase::TOPPASBase()</a>.</p>

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<p>saves the pipeline (determined by Qt's sender mechanism) </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASBase.html#afd455e46d2145ebb46704df56311c330">TOPPASBase::activeWindow_()</a>, <a class="el" href="classOpenMS_1_1File.html#a6487771c96fec9db032960c91864884e">File::basename()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ad7e2bb620199713343abf73d1f56fb78">TOPPASBase::current_path_</a>, <a class="el" href="classOpenMS_1_1TOPPASScene.html#abb684ed6fbde4f7251c27bb283755ade">TOPPASScene::getSaveFileName()</a>, <a class="el" href="classOpenMS_1_1TOPPASWidget.html#a862b30cc19877af17d727d9d41fe1734">TOPPASWidget::getScene()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0c3d3da9c968a52089d602934ace3f28">TOPPASBase::savePipelineAs()</a>, <a class="el" href="classOpenMS_1_1TOPPASScene.html#adaabe3154a63f5243965eba1e62a0ba0">TOPPASScene::store()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a6ff72b84ff2b11f24b3c4476b5f2043e">TOPPASBase::tab_bar_</a>, and <a class="el" href="classOpenMS_1_1String.html#ab9244483ff324b0dbd3e89d03ee63eb2">String::toQString()</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a49eff2b09cb070797e67ed81eb0581d4">TOPPASBase::showAsWindow_()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0d556823d1bc2537b662aa979b184911">TOPPASBase::TOPPASBase()</a>.</p>

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          <td class="paramname"><em>w</em>, </td>
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<p>Saves the workflow in the provided <a class="el" href="classOpenMS_1_1TOPPASWidget.html" title="Widget visualizing and allowing to edit TOPP pipelines. ">TOPPASWidget</a> to a user defined location. Returns the full file name or "" if no valid one is selected. </p>

<p>References <a class="el" href="classOpenMS_1_1File.html#a6487771c96fec9db032960c91864884e">File::basename()</a>, <a class="el" href="classOpenMS_1_1TOPPASWidget.html#a862b30cc19877af17d727d9d41fe1734">TOPPASWidget::getScene()</a>, <a class="el" href="IsotopeWaveletParallelFor_8h.html#a070d2ce7b6bb7e5c05602aa8c308d0c4">NULL</a>, <a class="el" href="classOpenMS_1_1TOPPASScene.html#adaabe3154a63f5243965eba1e62a0ba0">TOPPASScene::store()</a>, and <a class="el" href="classOpenMS_1_1String.html#ab9244483ff324b0dbd3e89d03ee63eb2">String::toQString()</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#abc580cb500d458ddef9308feca871326">TOPPASBase::refreshPipelineParameters()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ae1ce47a5e7d3b7b35354920271083d25">TOPPASBase::saveCurrentPipelineAs()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#a7134dba5f240779e2f9796ceaa1bdb2c">TOPPASBase::savePipeline()</a>.</p>

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<p>shows a file dialog for selecting the resource file to write to </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASBase.html#afd455e46d2145ebb46704df56311c330">TOPPASBase::activeWindow_()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ad7e2bb620199713343abf73d1f56fb78">TOPPASBase::current_path_</a>, and <a class="el" href="classOpenMS_1_1String.html#ab9244483ff324b0dbd3e89d03ee63eb2">String::toQString()</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0d556823d1bc2537b662aa979b184911">TOPPASBase::TOPPASBase()</a>.</p>

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          <td>(</td>
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          <td class="paramname"><em>w</em>, </td>
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<p>Saves the resources of the <a class="el" href="classOpenMS_1_1TOPPASWidget.html" title="Widget visualizing and allowing to edit TOPP pipelines. ">TOPPASWidget</a>. </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASScene.html#aaec6e7bbc2f0f96ef344c530e7f71c32">TOPPASScene::createResources()</a>, <a class="el" href="classOpenMS_1_1TOPPASWidget.html#a862b30cc19877af17d727d9d41fe1734">TOPPASWidget::getScene()</a>, and <a class="el" href="classOpenMS_1_1TOPPASResources.html#ae9005bda017a2220dfb8ae0747865552">TOPPASResources::store()</a>.</p>

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<p>stores the preferences (used when this window is closed) </p>

<p>References <a class="el" href="classOpenMS_1_1Param.html#a25319a96118d2373efc5af9c8679b98b">Param::copy()</a>, <a class="el" href="classOpenMS_1_1Param.html#abd0f5571675ec99e1aa647b39e2a8711">Param::getValue()</a>, <a class="el" href="classOpenMS_1_1VersionInfo.html#ad463592f1516b9e0fbf5431e324cdf1b">VersionInfo::getVersion()</a>, <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a28c73e623c63a4fe3bfceb1ae8274f39">DefaultParamHandler::param_</a>, <a class="el" href="classOpenMS_1_1Param.html#a432099944e11263aa20aaf8ea1389790">Param::setValue()</a>, and <a class="el" href="classOpenMS_1_1ParamXMLFile.html#abc2449ecf46bffe99727fc2c1df21079">ParamXMLFile::store()</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#af51e5796d9cbf0a727839fa4585a0a03">TOPPASBase::preferencesDialog()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#a90b94fe09745cca382498e76f86bfd57">TOPPASBase::~TOPPASBase()</a>.</p>

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          <td>(</td>
          <td class="paramtype"><a class="el" href="classOpenMS_1_1TOPPASScene.html">TOPPASScene</a> *&#160;</td>
          <td class="paramname"><em>scene</em></td><td>)</td>
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<p>Saves <code>scene</code> to the clipboard. </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASBase.html#aeeaa26459435ff477cb985b6df1a4dda">TOPPASBase::clipboard_scene_</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a49eff2b09cb070797e67ed81eb0581d4">TOPPASBase::showAsWindow_()</a>.</p>

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<p>Sends the clipboard content to the sender of the connected signal. </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASBase.html#aeeaa26459435ff477cb985b6df1a4dda">TOPPASBase::clipboard_scene_</a>, and <a class="el" href="classOpenMS_1_1TOPPASScene.html#a79670baa994d9df95e18b96cbd570443">TOPPASScene::setClipboard()</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a49eff2b09cb070797e67ed81eb0581d4">TOPPASBase::showAsWindow_()</a>.</p>

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<p>Shows the 'About' dialog. </p>

<p>References <a class="el" href="classOpenMS_1_1VersionInfo.html#ad463592f1516b9e0fbf5431e324cdf1b">VersionInfo::getVersion()</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0d556823d1bc2537b662aa979b184911">TOPPASBase::TOPPASBase()</a>.</p>

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          <td class="paramname"><em>sw</em>, </td>
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          <td class="paramtype">const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;&#160;</td>
          <td class="paramname"><em>caption</em>, </td>
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<p>Shows the widget as window in the workspace (the special_id is only used for the first untitled widget (to be able to auto-close it later) </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASTabBar.html#a724e639a4d5c2a3b97b741e371b69e2e">TOPPASTabBar::addTab()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a582b9d08f4ab872a48b3c02157b98593">TOPPASBase::addTOPPASFile()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a163fa7d92ef3958a6d9e7b2515890a9b">TOPPASBase::desc_</a>, <a class="el" href="classOpenMS_1_1TOPPASScene.html#a9479edb21dd0d3f81e0dc9f1953b90cd">TOPPASScene::getDescription()</a>, <a class="el" href="classOpenMS_1_1TOPPASWidget.html#a862b30cc19877af17d727d9d41fe1734">TOPPASWidget::getScene()</a>, <a class="el" href="classOpenMS_1_1TOPPASWidget.html#af1335566dab6e635d94d8038a2c20f1e">TOPPASWidget::getWindowId()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a920a42d633d432b8c5eae48a8167d752">TOPPASBase::insertNewVertex_()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#aa2044b4fb1589b5fb450b65c2b9b3636">TOPPASBase::openFilesInTOPPView()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a7134dba5f240779e2f9796ceaa1bdb2c">TOPPASBase::savePipeline()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#af25c1f2cd8bb8861608b90a8f2d90c92">TOPPASBase::saveToClipboard()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a09148723879585973ac00755a420b3e4">TOPPASBase::sendClipboardContent()</a>, <a class="el" href="classOpenMS_1_1TOPPASTabBar.html#a24b7087c58d55d928304e4b393a71fc1">TOPPASTabBar::setCurrentId()</a>, <a class="el" href="classOpenMS_1_1TOPPASWidget.html#a94605f68bf4fd4888fbfae07f23af5af">TOPPASWidget::setWindowId()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a1f3f64de44f2621ed554af31b78c20de">TOPPASBase::showCursorStatus()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a5d8bef6119dd93d5e20252cf736e488f">TOPPASBase::showPipelineFinishedLogMessage()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ac7fa650b55659fe58344e567b0aa6660">TOPPASBase::showStatusMessage()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a6ff72b84ff2b11f24b3c4476b5f2043e">TOPPASBase::tab_bar_</a>, <a class="el" href="classOpenMS_1_1String.html#ab9244483ff324b0dbd3e89d03ee63eb2">String::toQString()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ac05247c60977ff8e8674fef3132618c3">TOPPASBase::updateMenu()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ae4b86c5e07ea95506d6d30741efa590d">TOPPASBase::updateTOPPOutputLog()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#a22247eef88789204058d31bb0e709252">TOPPASBase::ws_</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a582b9d08f4ab872a48b3c02157b98593">TOPPASBase::addTOPPASFile()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#a61037f7b27b0427d3ff2160ff4199d68">TOPPASBase::newPipeline()</a>.</p>

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          <td class="paramtype"><a class="el" href="classdouble.html">double</a>&#160;</td>
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<p>shows x,y coordinates in the status bar </p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a49eff2b09cb070797e67ed81eb0581d4">TOPPASBase::showAsWindow_()</a>.</p>

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          <td>(</td>
          <td class="paramtype"><a class="el" href="classOpenMS_1_1TOPPASBase.html#a25fc0d0af7fa6b9118e460ff06bbd36c">TOPPASBase::LogState</a>&#160;</td>
          <td class="paramname"><em>state</em>, </td>
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          <td class="paramtype">const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;&#160;</td>
          <td class="paramname"><em>heading</em>, </td>
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          <td class="paramtype">const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;&#160;</td>
          <td class="paramname"><em>body</em>&#160;</td>
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<p>Shows a log message in the log_ window. </p>

<p>References <a class="el" href="classOpenMS_1_1DateTime.html#ad7d597718f6eb1657be6effcc3f91a02">DateTime::getTime()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a3c9ac638740799cd47c6c231000f99aa">TOPPASBase::log_</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a25fc0d0af7fa6b9118e460ff06bbd36caa0182d7118d1f75653d4b6a69fcb30cf">TOPPASBase::LS_ERROR</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a25fc0d0af7fa6b9118e460ff06bbd36cabc535fe2d17df8aab638823e6d6664e1">TOPPASBase::LS_NOTICE</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a25fc0d0af7fa6b9118e460ff06bbd36cacf5c525f6bc1621abe3e39f102272907">TOPPASBase::LS_WARNING</a>, <a class="el" href="classOpenMS_1_1DateTime.html#a27fa24aa34288a3934c3d5a936463973">DateTime::now()</a>, and <a class="el" href="classOpenMS_1_1String.html#ab9244483ff324b0dbd3e89d03ee63eb2">String::toQString()</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a913432d621fa5615f484022beb187cb9">TOPPASBase::downloadTOPPASfromHomepage_()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a1c9368295d712e9f38580b6d20e1bebc">TOPPASBase::outputVertexFinished()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a5d8bef6119dd93d5e20252cf736e488f">TOPPASBase::showPipelineFinishedLogMessage()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#af215168f972a65183fa5819430870d4e">TOPPASBase::toolCrashed()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#aec04230b69cc4bcb9edbc41b80baa55f">TOPPASBase::toolFailed()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a5999feb381958474518086dafd44c99e">TOPPASBase::toolFinished()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ad313b7a2f2e778ba2f91c2fa0447f4ea">TOPPASBase::toolStarted()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#a958f0ed6befa5fcb2afe3228b0b1680a">TOPPASBase::toppasFileDownloaded_()</a>.</p>

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<p>Called by the scene if the pipeline execution finishes successfully. </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASBase.html#a25fc0d0af7fa6b9118e460ff06bbd36cabc535fe2d17df8aab638823e6d6664e1">TOPPASBase::LS_NOTICE</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#abbbece6cdb8abfa381ec1c4c913b376c">TOPPASBase::showLogMessage_()</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a49eff2b09cb070797e67ed81eb0581d4">TOPPASBase::showAsWindow_()</a>.</p>

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          <td></td>
          <td class="paramtype"><a class="el" href="group__Concept.html#gaba0996d26f7be2572973245b51852757">OpenMS::UInt</a>&#160;</td>
          <td class="paramname"><em>time</em>&#160;</td>
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<p>Shows a status message in the status bar. </p>
<p>If <code>time</code> is 0 the status message is displayed until showStatusMessage is called with an empty message or a new message. Otherwise the message is displayed for <code>time</code> ms. </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASBase.html#abc995e7e5fefa1e3daebfbeff7b4bde8">TOPPASBase::message_label_</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a49eff2b09cb070797e67ed81eb0581d4">TOPPASBase::showAsWindow_()</a>.</p>

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<p>shows the URL stored in the data of the sender QAction </p>

<p>References <a class="el" href="classOpenMS_1_1File.html#a4159372f1847f4cec7da0b7cadbfd60c">File::findDoc()</a>, and <a class="el" href="classOpenMS_1_1String.html#ab9244483ff324b0dbd3e89d03ee63eb2">String::toQString()</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0d556823d1bc2537b662aa979b184911">TOPPASBase::TOPPASBase()</a>.</p>

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<p>Called when a tool crashes. </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASToolVertex.html#a58b53c2e8f1a1589a2aa16930ddb428d">TOPPASToolVertex::getName()</a>, <a class="el" href="classOpenMS_1_1TOPPASToolVertex.html#aa23b352e29bc8e7bbc2d870b90f28760">TOPPASToolVertex::getType()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a25fc0d0af7fa6b9118e460ff06bbd36caa0182d7118d1f75653d4b6a69fcb30cf">TOPPASBase::LS_ERROR</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#abbbece6cdb8abfa381ec1c4c913b376c">TOPPASBase::showLogMessage_()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#ac05247c60977ff8e8674fef3132618c3">TOPPASBase::updateMenu()</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a582b9d08f4ab872a48b3c02157b98593">TOPPASBase::addTOPPASFile()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#a920a42d633d432b8c5eae48a8167d752">TOPPASBase::insertNewVertex_()</a>.</p>

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<p>Called when a tool execution fails. </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASToolVertex.html#a58b53c2e8f1a1589a2aa16930ddb428d">TOPPASToolVertex::getName()</a>, <a class="el" href="classOpenMS_1_1TOPPASToolVertex.html#aa23b352e29bc8e7bbc2d870b90f28760">TOPPASToolVertex::getType()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a25fc0d0af7fa6b9118e460ff06bbd36caa0182d7118d1f75653d4b6a69fcb30cf">TOPPASBase::LS_ERROR</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#abbbece6cdb8abfa381ec1c4c913b376c">TOPPASBase::showLogMessage_()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#ac05247c60977ff8e8674fef3132618c3">TOPPASBase::updateMenu()</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a582b9d08f4ab872a48b3c02157b98593">TOPPASBase::addTOPPASFile()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#a920a42d633d432b8c5eae48a8167d752">TOPPASBase::insertNewVertex_()</a>.</p>

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<p>Called when a tool is finished. </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASToolVertex.html#a58b53c2e8f1a1589a2aa16930ddb428d">TOPPASToolVertex::getName()</a>, <a class="el" href="classOpenMS_1_1TOPPASToolVertex.html#aa23b352e29bc8e7bbc2d870b90f28760">TOPPASToolVertex::getType()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a25fc0d0af7fa6b9118e460ff06bbd36cabc535fe2d17df8aab638823e6d6664e1">TOPPASBase::LS_NOTICE</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#abbbece6cdb8abfa381ec1c4c913b376c">TOPPASBase::showLogMessage_()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#ac05247c60977ff8e8674fef3132618c3">TOPPASBase::updateMenu()</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a582b9d08f4ab872a48b3c02157b98593">TOPPASBase::addTOPPASFile()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#a920a42d633d432b8c5eae48a8167d752">TOPPASBase::insertNewVertex_()</a>.</p>

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<p>Called when a tool is started. </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASToolVertex.html#a58b53c2e8f1a1589a2aa16930ddb428d">TOPPASToolVertex::getName()</a>, <a class="el" href="classOpenMS_1_1TOPPASVertex.html#accd21d0b722a9e29b05120af452e969f">TOPPASVertex::getTopoNr()</a>, <a class="el" href="classOpenMS_1_1TOPPASToolVertex.html#aa23b352e29bc8e7bbc2d870b90f28760">TOPPASToolVertex::getType()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a25fc0d0af7fa6b9118e460ff06bbd36cabc535fe2d17df8aab638823e6d6664e1">TOPPASBase::LS_NOTICE</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#abbbece6cdb8abfa381ec1c4c913b376c">TOPPASBase::showLogMessage_()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#ac05247c60977ff8e8674fef3132618c3">TOPPASBase::updateMenu()</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a582b9d08f4ab872a48b3c02157b98593">TOPPASBase::addTOPPASFile()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#a920a42d633d432b8c5eae48a8167d752">TOPPASBase::insertNewVertex_()</a>.</p>

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<p>triggered when download of .toppas file is finished, so we can store &amp; open it </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASBase.html#a582b9d08f4ab872a48b3c02157b98593">TOPPASBase::addTOPPASFile()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ad7e2bb620199713343abf73d1f56fb78">TOPPASBase::current_path_</a>, <a class="el" href="LogStream_8h.html#aea3f57d6dcc5b4ac957e2679e87dde27">LOG_WARN</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a25fc0d0af7fa6b9118e460ff06bbd36cabc535fe2d17df8aab638823e6d6664e1">TOPPASBase::LS_NOTICE</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#abbbece6cdb8abfa381ec1c4c913b376c">TOPPASBase::showLogMessage_()</a>, <a class="el" href="classOpenMS_1_1String.html#ab9244483ff324b0dbd3e89d03ee63eb2">String::toQString()</a>, and <a class="el" href="classOpenMS_1_1String.html#a86864c88ee12eb322f1645f238c1dbe5">String::trim()</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0d556823d1bc2537b662aa979b184911">TOPPASBase::TOPPASBase()</a>.</p>

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<p>changes the current path according to the currently active window/layer </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASBase.html#ad7e2bb620199713343abf73d1f56fb78">TOPPASBase::current_path_</a>, <a class="el" href="classOpenMS_1_1Param.html#abd0f5571675ec99e1aa647b39e2a8711">Param::getValue()</a>, and <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a28c73e623c63a4fe3bfceb1ae8274f39">DefaultParamHandler::param_</a>.</p>

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<p>enable/disable menu entries depending on the current state </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASBase.html#afd455e46d2145ebb46704df56311c330">TOPPASBase::activeWindow_()</a>, <a class="el" href="classOpenMS_1_1TOPPASWidget.html#a862b30cc19877af17d727d9d41fe1734">TOPPASWidget::getScene()</a>, <a class="el" href="classOpenMS_1_1TOPPASScene.html#a96d4637194b76c2c626c38fda2ad2a29">TOPPASScene::isPipelineRunning()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a6ff72b84ff2b11f24b3c4476b5f2043e">TOPPASBase::tab_bar_</a>, and <a class="el" href="classOpenMS_1_1TOPPASScene.html#a5c714ff8c21c7dcf1629ef957a92625f">TOPPASScene::wasChanged()</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#ae6d95c909402024df0f7a78d69a7c424">TOPPASBase::abortPipeline()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ad63103547742582c0a8c2f740c0ebe2a">TOPPASBase::closeByTab()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ab2ff17b940ae7aca4827d832ceeaeda4">TOPPASBase::closeFile()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a49eff2b09cb070797e67ed81eb0581d4">TOPPASBase::showAsWindow_()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#af215168f972a65183fa5819430870d4e">TOPPASBase::toolCrashed()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#aec04230b69cc4bcb9edbc41b80baa55f">TOPPASBase::toolFailed()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a5999feb381958474518086dafd44c99e">TOPPASBase::toolFinished()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ad313b7a2f2e778ba2f91c2fa0447f4ea">TOPPASBase::toolStarted()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0d556823d1bc2537b662aa979b184911">TOPPASBase::TOPPASBase()</a>.</p>

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<p>brings the tab corresponding to the active window in front </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASTabBar.html#a24b7087c58d55d928304e4b393a71fc1">TOPPASTabBar::setCurrentId()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#a6ff72b84ff2b11f24b3c4476b5f2043e">TOPPASBase::tab_bar_</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0d556823d1bc2537b662aa979b184911">TOPPASBase::TOPPASBase()</a>.</p>

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<p>updates the toolbar </p>

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<p>Called when a TOPP tool produces (error) output. </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASBase.html#a3c9ac638740799cd47c6c231000f99aa">TOPPASBase::log_</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a582b9d08f4ab872a48b3c02157b98593">TOPPASBase::addTOPPASFile()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a920a42d633d432b8c5eae48a8167d752">TOPPASBase::insertNewVertex_()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#a49eff2b09cb070797e67ed81eb0581d4">TOPPASBase::showAsWindow_()</a>.</p>

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          <td class="memname"><a class="el" href="classOpenMS_1_1TOPPASWidget.html">TOPPASWidget</a> * window_ </td>
          <td>(</td>
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<p>returns the window with id <code>id</code> </p>

<p>References <a class="el" href="classOpenMS_1_1TOPPASWidget.html#af1335566dab6e635d94d8038a2c20f1e">TOPPASWidget::getWindowId()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#a22247eef88789204058d31bb0e709252">TOPPASBase::ws_</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a582b9d08f4ab872a48b3c02157b98593">TOPPASBase::addTOPPASFile()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ad63103547742582c0a8c2f740c0ebe2a">TOPPASBase::closeByTab()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#ab74190be2e6728756a5238cef1f48b34">TOPPASBase::focusByTab()</a>.</p>

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<h2 class="groupheader">Member Data Documentation</h2>
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<p>List of ready analysis pipelines. </p>

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<p>The clipboard. </p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#af25c1f2cd8bb8861608b90a8f2d90c92">TOPPASBase::saveToClipboard()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#a09148723879585973ac00755a420b3e4">TOPPASBase::sendClipboardContent()</a>.</p>

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<p>The current path (used for loading and storing). Depending on the preferences this is static or changes with the current window/layer. </p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#ac260355ee5d45ae2229fad3fab3bf42f">TOPPASBase::exportAsImage()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#aac817d9927b9d971b720a9e34abb66ca">TOPPASBase::includePipeline()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ae344ec338cc139cf991afe7edf99268b">TOPPASBase::loadPipelineResourceFile()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a97b77d0916ad8455109c30f8864b5407">TOPPASBase::openFileDialog()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a18a56e69770627550c587e6437d3f6a3">TOPPASBase::refreshParameters()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ae1ce47a5e7d3b7b35354920271083d25">TOPPASBase::saveCurrentPipelineAs()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a7134dba5f240779e2f9796ceaa1bdb2c">TOPPASBase::savePipeline()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#acc9e48279d18b4b5caa6823bee22f8d8">TOPPASBase::savePipelineResourceFile()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0d556823d1bc2537b662aa979b184911">TOPPASBase::TOPPASBase()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a958f0ed6befa5fcb2afe3228b0b1680a">TOPPASBase::toppasFileDownloaded_()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#a7b2218783c20babf5c6cfaee9b43f62a">TOPPASBase::updateCurrentPath()</a>.</p>

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<p>Workflow Description window. </p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a4c0ca2533e573937f23715b2fb2beb72">TOPPASBase::descriptionUpdated_()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ab74190be2e6728756a5238cef1f48b34">TOPPASBase::focusByTab()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a49eff2b09cb070797e67ed81eb0581d4">TOPPASBase::showAsWindow_()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0d556823d1bc2537b662aa979b184911">TOPPASBase::TOPPASBase()</a>.</p>

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<p>use this for the first call to <a class="el" href="classOpenMS_1_1TOPPASBase.html#a61037f7b27b0427d3ff2160ff4199d68" title="shows the dialog for creating a new file (pass IDINITIALUNTITLED as id if its the first call) ...">newPipeline()</a>, to ensure that the first empty (and unmodified) workspace is closed iff existing workflows are loaded </p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a582b9d08f4ab872a48b3c02157b98593">TOPPASBase::addTOPPASFile()</a>, and <a class="el" href="TOPPAS_8C.html#a217dbf8b442f20279ea00b898af96f52">main()</a>.</p>

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<p>Log output window. </p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#abbbece6cdb8abfa381ec1c4c913b376c">TOPPASBase::showLogMessage_()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0d556823d1bc2537b662aa979b184911">TOPPASBase::TOPPASBase()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#ae4b86c5e07ea95506d6d30741efa590d">TOPPASBase::updateTOPPOutputLog()</a>.</p>

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<p>Label for messages in the status bar. </p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#ac7fa650b55659fe58344e567b0aa6660">TOPPASBase::showStatusMessage()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0d556823d1bc2537b662aa979b184911">TOPPASBase::TOPPASBase()</a>.</p>

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<p>download .toppas files from homepage </p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a913432d621fa5615f484022beb187cb9">TOPPASBase::downloadTOPPASfromHomepage_()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0d556823d1bc2537b662aa979b184911">TOPPASBase::TOPPASBase()</a>.</p>

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<p>Offset counter for new inserted nodes (to avoid invisible stacking) </p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a09010127ab044b25bfab594c863cb30a">TOPPASBase::insertNewVertexInCenter_()</a>.</p>

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          <td class="memname"><a class="el" href="classOpenMS_1_1TOPPASTabBar.html">TOPPASTabBar</a>* tab_bar_</td>
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<p>Tab bar. The address of the corresponding window to a tab is stored as an int in tabData() </p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#ad63103547742582c0a8c2f740c0ebe2a">TOPPASBase::closeByTab()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a18a56e69770627550c587e6437d3f6a3">TOPPASBase::refreshParameters()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ae1ce47a5e7d3b7b35354920271083d25">TOPPASBase::saveCurrentPipelineAs()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a7134dba5f240779e2f9796ceaa1bdb2c">TOPPASBase::savePipeline()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a49eff2b09cb070797e67ed81eb0581d4">TOPPASBase::showAsWindow_()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0d556823d1bc2537b662aa979b184911">TOPPASBase::TOPPASBase()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ac05247c60977ff8e8674fef3132618c3">TOPPASBase::updateMenu()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#af8468d886fa3eea83c3554d63c1bdd8c">TOPPASBase::updateTabBar()</a>.</p>

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<p>The path for temporary files. </p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a582b9d08f4ab872a48b3c02157b98593">TOPPASBase::addTOPPASFile()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a61037f7b27b0427d3ff2160ff4199d68">TOPPASBase::newPipeline()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0d556823d1bc2537b662aa979b184911">TOPPASBase::TOPPASBase()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#a90b94fe09745cca382498e76f86bfd57">TOPPASBase::~TOPPASBase()</a>.</p>

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          <td class="memname"><a class="el" href="classQTreeWidget.html">QTreeWidget</a>* tools_tree_view_</td>
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<p>Tree view of all available TOPP tools. </p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a920a42d633d432b8c5eae48a8167d752">TOPPASBase::insertNewVertex_()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a09010127ab044b25bfab594c863cb30a">TOPPASBase::insertNewVertexInCenter_()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0d556823d1bc2537b662aa979b184911">TOPPASBase::TOPPASBase()</a>.</p>

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<p><a class="el" href="namespaceOpenMS.html" title="Main OpenMS namespace. ">OpenMS</a> homepage workflow browser. </p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a913432d621fa5615f484022beb187cb9">TOPPASBase::downloadTOPPASfromHomepage_()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ad6388f13dad5f436779fe675e2d4981c">TOPPASBase::openOnlinePipelineRepository()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0d556823d1bc2537b662aa979b184911">TOPPASBase::TOPPASBase()</a>.</p>

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<p>Main workspace. </p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#afd455e46d2145ebb46704df56311c330">TOPPASBase::activeWindow_()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a582b9d08f4ab872a48b3c02157b98593">TOPPASBase::addTOPPASFile()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a5de2bd09256045c0b96e5a0be780fa85">TOPPASBase::closeEvent()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ab2ff17b940ae7aca4827d832ceeaeda4">TOPPASBase::closeFile()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a61037f7b27b0427d3ff2160ff4199d68">TOPPASBase::newPipeline()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a49eff2b09cb070797e67ed81eb0581d4">TOPPASBase::showAsWindow_()</a>, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0d556823d1bc2537b662aa979b184911">TOPPASBase::TOPPASBase()</a>, and <a class="el" href="classOpenMS_1_1TOPPASBase.html#a2641a121447802c6303d7841740d0560">TOPPASBase::window_()</a>.</p>

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          <td class="memname">qreal z_value_ = 42.0</td>
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<p>z-value counter for new inserted nodes (new nodes should be on top) </p>

<p>Referenced by <a class="el" href="classOpenMS_1_1TOPPASBase.html#a920a42d633d432b8c5eae48a8167d752">TOPPASBase::insertNewVertex_()</a>.</p>

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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:35 using doxygen 1.8.5</font></TD>
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