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<HTML>
<HEAD>
<TITLE>TextFile Class Reference</TITLE>
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<li class="navelem"><a class="el" href="namespaceOpenMS.html">OpenMS</a></li><li class="navelem"><a class="el" href="classOpenMS_1_1TextFile.html">TextFile</a></li>  </ul>
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<div class="header">
  <div class="summary">
<a href="#pub-methods">Public Member Functions</a> &#124;
<a href="classOpenMS_1_1TextFile-members.html">List of all members</a>  </div>
  <div class="headertitle">
<div class="title">TextFile Class Reference<div class="ingroups"><a class="el" href="group__FileIO.html">File IO</a></div></div>  </div>
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<p>This class provides some basic file handling methods for text files.  
 <a href="classOpenMS_1_1TextFile.html#details">More...</a></p>

<p><code>#include &lt;<a class="el" href="TextFile_8h_source.html">OpenMS/FORMAT/TextFile.h</a>&gt;</code></p>
<div class="dynheader">
Inheritance diagram for TextFile:</div>
<div class="dyncontent">
 <div class="center">
  <img src="classOpenMS_1_1TextFile.png" usemap="#TextFile_map" alt=""/>
  <map id="TextFile_map" name="TextFile_map">
<area href="classOpenMS_1_1StringList.html" title="String list. " alt="StringList" shape="rect" coords="0,56,105,80"/>
<area href="classOpenMS_1_1CsvFile.html" title="This class handles csv files. Currently only loading is implemented. " alt="CsvFile" shape="rect" coords="0,168,105,192"/>
</map>
 </div></div>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:a65b3f2d69d322ea4e246e5bb75508b7f"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TextFile.html#a65b3f2d69d322ea4e246e5bb75508b7f">TextFile</a> ()</td></tr>
<tr class="memdesc:a65b3f2d69d322ea4e246e5bb75508b7f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Default constructor.  <a href="#a65b3f2d69d322ea4e246e5bb75508b7f">More...</a><br/></td></tr>
<tr class="separator:a65b3f2d69d322ea4e246e5bb75508b7f"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a52d8679729b7777e9862e3e3ee212399"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TextFile.html#a52d8679729b7777e9862e3e3ee212399">~TextFile</a> ()</td></tr>
<tr class="memdesc:a52d8679729b7777e9862e3e3ee212399"><td class="mdescLeft">&#160;</td><td class="mdescRight">destructor  <a href="#a52d8679729b7777e9862e3e3ee212399">More...</a><br/></td></tr>
<tr class="separator:a52d8679729b7777e9862e3e3ee212399"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ae8a863607d0c85502d039fc6da440ca0"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TextFile.html#ae8a863607d0c85502d039fc6da440ca0">TextFile</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;filename, bool trim_lines=false, <a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> first_n=-1)</td></tr>
<tr class="memdesc:ae8a863607d0c85502d039fc6da440ca0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructor with filename.  <a href="#ae8a863607d0c85502d039fc6da440ca0">More...</a><br/></td></tr>
<tr class="separator:ae8a863607d0c85502d039fc6da440ca0"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a9b9784a42f589ad6f249066624a80591"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TextFile.html#a9b9784a42f589ad6f249066624a80591">load</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;filename, bool trim_lines=false, <a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> first_n=-1)</td></tr>
<tr class="memdesc:a9b9784a42f589ad6f249066624a80591"><td class="mdescLeft">&#160;</td><td class="mdescRight">Loads data from a text file.  <a href="#a9b9784a42f589ad6f249066624a80591">More...</a><br/></td></tr>
<tr class="separator:a9b9784a42f589ad6f249066624a80591"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a4fb93f999151e70a0f506c4c36f63fd7"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TextFile.html#a4fb93f999151e70a0f506c4c36f63fd7">store</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;filename)</td></tr>
<tr class="memdesc:a4fb93f999151e70a0f506c4c36f63fd7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Writes the data to a file.  <a href="#a4fb93f999151e70a0f506c4c36f63fd7">More...</a><br/></td></tr>
<tr class="separator:a4fb93f999151e70a0f506c4c36f63fd7"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pub_methods_classOpenMS_1_1StringList"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classOpenMS_1_1StringList')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classOpenMS_1_1StringList.html">StringList</a></td></tr>
<tr class="memitem:ab0be1e91c0f9f75b4b230f3059dd41f3 inherit pub_methods_classOpenMS_1_1StringList"><td class="memTemplParams" colspan="2">template&lt;typename StringType &gt; </td></tr>
<tr class="memitem:ab0be1e91c0f9f75b4b230f3059dd41f3 inherit pub_methods_classOpenMS_1_1StringList"><td class="memTemplItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1StringList.html">StringList</a> &amp;&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1StringList.html#ab0be1e91c0f9f75b4b230f3059dd41f3">operator&lt;&lt;</a> (const StringType &amp;string)</td></tr>
<tr class="memdesc:ab0be1e91c0f9f75b4b230f3059dd41f3 inherit pub_methods_classOpenMS_1_1StringList"><td class="mdescLeft">&#160;</td><td class="mdescRight">Operator for appending entries with less code.  <a href="#ab0be1e91c0f9f75b4b230f3059dd41f3">More...</a><br/></td></tr>
<tr class="separator:ab0be1e91c0f9f75b4b230f3059dd41f3 inherit pub_methods_classOpenMS_1_1StringList"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:af4a386323a5a2bdffcbf06bf5a70a0ae inherit pub_methods_classOpenMS_1_1StringList"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1StringList.html#af4a386323a5a2bdffcbf06bf5a70a0ae">contains</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;s) const </td></tr>
<tr class="memdesc:af4a386323a5a2bdffcbf06bf5a70a0ae inherit pub_methods_classOpenMS_1_1StringList"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns if a string is contained in the list.  <a href="#af4a386323a5a2bdffcbf06bf5a70a0ae">More...</a><br/></td></tr>
<tr class="separator:af4a386323a5a2bdffcbf06bf5a70a0ae inherit pub_methods_classOpenMS_1_1StringList"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aced434f03c0594b74bcd7453184b95a3 inherit pub_methods_classOpenMS_1_1StringList"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1StringList.html#aced434f03c0594b74bcd7453184b95a3">toUpper</a> ()</td></tr>
<tr class="memdesc:aced434f03c0594b74bcd7453184b95a3 inherit pub_methods_classOpenMS_1_1StringList"><td class="mdescLeft">&#160;</td><td class="mdescRight">Transforms all contained strings to upper case.  <a href="#aced434f03c0594b74bcd7453184b95a3">More...</a><br/></td></tr>
<tr class="separator:aced434f03c0594b74bcd7453184b95a3 inherit pub_methods_classOpenMS_1_1StringList"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:adb7e069688aa84f251961a1e7714e355 inherit pub_methods_classOpenMS_1_1StringList"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1StringList.html#adb7e069688aa84f251961a1e7714e355">toLower</a> ()</td></tr>
<tr class="memdesc:adb7e069688aa84f251961a1e7714e355 inherit pub_methods_classOpenMS_1_1StringList"><td class="mdescLeft">&#160;</td><td class="mdescRight">Transforms all contained strings to lower case.  <a href="#adb7e069688aa84f251961a1e7714e355">More...</a><br/></td></tr>
<tr class="separator:adb7e069688aa84f251961a1e7714e355 inherit pub_methods_classOpenMS_1_1StringList"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ade9f7e40ab3a712af3d8650bd7011d98 inherit pub_methods_classOpenMS_1_1StringList"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1String.html">String</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1StringList.html#ade9f7e40ab3a712af3d8650bd7011d98">concatenate</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;glue=&quot;&quot;) const </td></tr>
<tr class="memdesc:ade9f7e40ab3a712af3d8650bd7011d98 inherit pub_methods_classOpenMS_1_1StringList"><td class="mdescLeft">&#160;</td><td class="mdescRight">Concatenate the string elements and putting the <code>glue</code> string between elements.  <a href="#ade9f7e40ab3a712af3d8650bd7011d98">More...</a><br/></td></tr>
<tr class="separator:ade9f7e40ab3a712af3d8650bd7011d98 inherit pub_methods_classOpenMS_1_1StringList"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ab833bdf1a6af276ad8a4257c2358db2a inherit pub_methods_classOpenMS_1_1StringList"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1StringList.html#ab833bdf1a6af276ad8a4257c2358db2a">StringList</a> ()</td></tr>
<tr class="memdesc:ab833bdf1a6af276ad8a4257c2358db2a inherit pub_methods_classOpenMS_1_1StringList"><td class="mdescLeft">&#160;</td><td class="mdescRight">Default constructor.  <a href="#ab833bdf1a6af276ad8a4257c2358db2a">More...</a><br/></td></tr>
<tr class="separator:ab833bdf1a6af276ad8a4257c2358db2a inherit pub_methods_classOpenMS_1_1StringList"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a2124ba15277215541f739f401579eac5 inherit pub_methods_classOpenMS_1_1StringList"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1StringList.html#a2124ba15277215541f739f401579eac5">StringList</a> (const <a class="el" href="classOpenMS_1_1StringList.html">StringList</a> &amp;rhs)</td></tr>
<tr class="memdesc:a2124ba15277215541f739f401579eac5 inherit pub_methods_classOpenMS_1_1StringList"><td class="mdescLeft">&#160;</td><td class="mdescRight">Copy constructor.  <a href="#a2124ba15277215541f739f401579eac5">More...</a><br/></td></tr>
<tr class="separator:a2124ba15277215541f739f401579eac5 inherit pub_methods_classOpenMS_1_1StringList"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:af1300739802e0111e3f15c33c2370462 inherit pub_methods_classOpenMS_1_1StringList"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1StringList.html#af1300739802e0111e3f15c33c2370462">StringList</a> (const std::vector&lt; <a class="el" href="classOpenMS_1_1String.html">String</a> &gt; &amp;rhs)</td></tr>
<tr class="memdesc:af1300739802e0111e3f15c33c2370462 inherit pub_methods_classOpenMS_1_1StringList"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructor from vector&lt;String&gt;  <a href="#af1300739802e0111e3f15c33c2370462">More...</a><br/></td></tr>
<tr class="separator:af1300739802e0111e3f15c33c2370462 inherit pub_methods_classOpenMS_1_1StringList"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a3ef264cf61f14c7d83bbc56a014e24e7 inherit pub_methods_classOpenMS_1_1StringList"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1StringList.html#a3ef264cf61f14c7d83bbc56a014e24e7">StringList</a> (const std::vector&lt; std::string &gt; &amp;rhs)</td></tr>
<tr class="memdesc:a3ef264cf61f14c7d83bbc56a014e24e7 inherit pub_methods_classOpenMS_1_1StringList"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructor from vector&lt;string&gt;  <a href="#a3ef264cf61f14c7d83bbc56a014e24e7">More...</a><br/></td></tr>
<tr class="separator:a3ef264cf61f14c7d83bbc56a014e24e7 inherit pub_methods_classOpenMS_1_1StringList"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aae2fa37dedf3731d0a11f3e71a00b473 inherit pub_methods_classOpenMS_1_1StringList"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1StringList.html#aae2fa37dedf3731d0a11f3e71a00b473">StringList</a> (const QStringList &amp;rhs)</td></tr>
<tr class="memdesc:aae2fa37dedf3731d0a11f3e71a00b473 inherit pub_methods_classOpenMS_1_1StringList"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructor from QStringList.  <a href="#aae2fa37dedf3731d0a11f3e71a00b473">More...</a><br/></td></tr>
<tr class="separator:aae2fa37dedf3731d0a11f3e71a00b473 inherit pub_methods_classOpenMS_1_1StringList"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ade65eed3bde22595b3a28ae51cfda6f6 inherit pub_methods_classOpenMS_1_1StringList"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1StringList.html">StringList</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1StringList.html#ade65eed3bde22595b3a28ae51cfda6f6">operator=</a> (const <a class="el" href="classOpenMS_1_1StringList.html">StringList</a> &amp;rhs)</td></tr>
<tr class="memdesc:ade65eed3bde22595b3a28ae51cfda6f6 inherit pub_methods_classOpenMS_1_1StringList"><td class="mdescLeft">&#160;</td><td class="mdescRight">Assignment operator.  <a href="#ade65eed3bde22595b3a28ae51cfda6f6">More...</a><br/></td></tr>
<tr class="separator:ade65eed3bde22595b3a28ae51cfda6f6 inherit pub_methods_classOpenMS_1_1StringList"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ad7da074681bb6cca3ec6963c12b557f2 inherit pub_methods_classOpenMS_1_1StringList"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1StringList.html">StringList</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1StringList.html#ad7da074681bb6cca3ec6963c12b557f2">operator=</a> (const std::vector&lt; <a class="el" href="classOpenMS_1_1String.html">String</a> &gt; &amp;rhs)</td></tr>
<tr class="memdesc:ad7da074681bb6cca3ec6963c12b557f2 inherit pub_methods_classOpenMS_1_1StringList"><td class="mdescLeft">&#160;</td><td class="mdescRight">Assignment operator from vector&lt;String&gt;  <a href="#ad7da074681bb6cca3ec6963c12b557f2">More...</a><br/></td></tr>
<tr class="separator:ad7da074681bb6cca3ec6963c12b557f2 inherit pub_methods_classOpenMS_1_1StringList"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a01d1263a92d5543e0dee1faeb4ffa81b inherit pub_methods_classOpenMS_1_1StringList"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1StringList.html">StringList</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1StringList.html#a01d1263a92d5543e0dee1faeb4ffa81b">operator=</a> (const std::vector&lt; std::string &gt; &amp;rhs)</td></tr>
<tr class="memdesc:a01d1263a92d5543e0dee1faeb4ffa81b inherit pub_methods_classOpenMS_1_1StringList"><td class="mdescLeft">&#160;</td><td class="mdescRight">Assignment operator vector&lt;string&gt;  <a href="#a01d1263a92d5543e0dee1faeb4ffa81b">More...</a><br/></td></tr>
<tr class="separator:a01d1263a92d5543e0dee1faeb4ffa81b inherit pub_methods_classOpenMS_1_1StringList"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:af8f3d899be867b5da6825f304f3e7030 inherit pub_methods_classOpenMS_1_1StringList"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1StringList.html#a52cf141ce292251c9c6d7c22f296cbd5">Iterator</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1StringList.html#af8f3d899be867b5da6825f304f3e7030">search</a> (const <a class="el" href="classOpenMS_1_1StringList.html#a52cf141ce292251c9c6d7c22f296cbd5">Iterator</a> &amp;start, const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;text, bool trim=false)</td></tr>
<tr class="memdesc:af8f3d899be867b5da6825f304f3e7030 inherit pub_methods_classOpenMS_1_1StringList"><td class="mdescLeft">&#160;</td><td class="mdescRight">Searches for the first line that starts with <code>text</code> beginning at line <code>start</code>.  <a href="#af8f3d899be867b5da6825f304f3e7030">More...</a><br/></td></tr>
<tr class="separator:af8f3d899be867b5da6825f304f3e7030 inherit pub_methods_classOpenMS_1_1StringList"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a515e4d71cec8d8c76344008b9ec32b25 inherit pub_methods_classOpenMS_1_1StringList"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1StringList.html#a52cf141ce292251c9c6d7c22f296cbd5">Iterator</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1StringList.html#a515e4d71cec8d8c76344008b9ec32b25">search</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;text, bool trim=false)</td></tr>
<tr class="memdesc:a515e4d71cec8d8c76344008b9ec32b25 inherit pub_methods_classOpenMS_1_1StringList"><td class="mdescLeft">&#160;</td><td class="mdescRight">Searches for the first line that starts with <code>text</code>.  <a href="#a515e4d71cec8d8c76344008b9ec32b25">More...</a><br/></td></tr>
<tr class="separator:a515e4d71cec8d8c76344008b9ec32b25 inherit pub_methods_classOpenMS_1_1StringList"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a2b0a71890dfcaf40c16467f6e7ae7192 inherit pub_methods_classOpenMS_1_1StringList"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1StringList.html#a52cf141ce292251c9c6d7c22f296cbd5">Iterator</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1StringList.html#a2b0a71890dfcaf40c16467f6e7ae7192">searchSuffix</a> (const <a class="el" href="classOpenMS_1_1StringList.html#a52cf141ce292251c9c6d7c22f296cbd5">Iterator</a> &amp;start, const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;text, bool trim=false)</td></tr>
<tr class="memdesc:a2b0a71890dfcaf40c16467f6e7ae7192 inherit pub_methods_classOpenMS_1_1StringList"><td class="mdescLeft">&#160;</td><td class="mdescRight">Searches for the first line that ends with <code>text</code> beginning at line <code>start</code>.  <a href="#a2b0a71890dfcaf40c16467f6e7ae7192">More...</a><br/></td></tr>
<tr class="separator:a2b0a71890dfcaf40c16467f6e7ae7192 inherit pub_methods_classOpenMS_1_1StringList"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ae02dbff70cbce74d8cd4b62a153dd249 inherit pub_methods_classOpenMS_1_1StringList"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1StringList.html#a52cf141ce292251c9c6d7c22f296cbd5">Iterator</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1StringList.html#ae02dbff70cbce74d8cd4b62a153dd249">searchSuffix</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;text, bool trim=false)</td></tr>
<tr class="memdesc:ae02dbff70cbce74d8cd4b62a153dd249 inherit pub_methods_classOpenMS_1_1StringList"><td class="mdescLeft">&#160;</td><td class="mdescRight">Searches for the first line that ends with <code>text</code>.  <a href="#ae02dbff70cbce74d8cd4b62a153dd249">More...</a><br/></td></tr>
<tr class="separator:ae02dbff70cbce74d8cd4b62a153dd249 inherit pub_methods_classOpenMS_1_1StringList"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a6655bd49c462e8c752bf6b3234f86b66 inherit pub_methods_classOpenMS_1_1StringList"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1StringList.html#a67945f8464b125c988ded2dd2cfdf782">ConstIterator</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1StringList.html#a6655bd49c462e8c752bf6b3234f86b66">search</a> (const <a class="el" href="classOpenMS_1_1StringList.html#a67945f8464b125c988ded2dd2cfdf782">ConstIterator</a> &amp;start, const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;text, bool trim=false) const </td></tr>
<tr class="memdesc:a6655bd49c462e8c752bf6b3234f86b66 inherit pub_methods_classOpenMS_1_1StringList"><td class="mdescLeft">&#160;</td><td class="mdescRight">Searches for the first line that starts with <code>text</code> beginning at line <code>start</code>.  <a href="#a6655bd49c462e8c752bf6b3234f86b66">More...</a><br/></td></tr>
<tr class="separator:a6655bd49c462e8c752bf6b3234f86b66 inherit pub_methods_classOpenMS_1_1StringList"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:afd6ac22c13d8c8dcd1c2786526983504 inherit pub_methods_classOpenMS_1_1StringList"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1StringList.html#a67945f8464b125c988ded2dd2cfdf782">ConstIterator</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1StringList.html#afd6ac22c13d8c8dcd1c2786526983504">search</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;text, bool trim=false) const </td></tr>
<tr class="memdesc:afd6ac22c13d8c8dcd1c2786526983504 inherit pub_methods_classOpenMS_1_1StringList"><td class="mdescLeft">&#160;</td><td class="mdescRight">Searches for the first line that starts with <code>text</code>.  <a href="#afd6ac22c13d8c8dcd1c2786526983504">More...</a><br/></td></tr>
<tr class="separator:afd6ac22c13d8c8dcd1c2786526983504 inherit pub_methods_classOpenMS_1_1StringList"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a2ef5bd39cdeb54abd9b5c5161ab68838 inherit pub_methods_classOpenMS_1_1StringList"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1StringList.html#a67945f8464b125c988ded2dd2cfdf782">ConstIterator</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1StringList.html#a2ef5bd39cdeb54abd9b5c5161ab68838">searchSuffix</a> (const <a class="el" href="classOpenMS_1_1StringList.html#a67945f8464b125c988ded2dd2cfdf782">ConstIterator</a> &amp;start, const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;text, bool trim=false) const </td></tr>
<tr class="memdesc:a2ef5bd39cdeb54abd9b5c5161ab68838 inherit pub_methods_classOpenMS_1_1StringList"><td class="mdescLeft">&#160;</td><td class="mdescRight">Searches for the first line that ends with <code>text</code> beginning at line <code>start</code>.  <a href="#a2ef5bd39cdeb54abd9b5c5161ab68838">More...</a><br/></td></tr>
<tr class="separator:a2ef5bd39cdeb54abd9b5c5161ab68838 inherit pub_methods_classOpenMS_1_1StringList"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a41e55052ecc90f6dc6b115e1f05dcf2d inherit pub_methods_classOpenMS_1_1StringList"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1StringList.html#a67945f8464b125c988ded2dd2cfdf782">ConstIterator</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1StringList.html#a41e55052ecc90f6dc6b115e1f05dcf2d">searchSuffix</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;text, bool trim=false) const </td></tr>
<tr class="memdesc:a41e55052ecc90f6dc6b115e1f05dcf2d inherit pub_methods_classOpenMS_1_1StringList"><td class="mdescLeft">&#160;</td><td class="mdescRight">Searches for the first line that ends with <code>text</code>.  <a href="#a41e55052ecc90f6dc6b115e1f05dcf2d">More...</a><br/></td></tr>
<tr class="separator:a41e55052ecc90f6dc6b115e1f05dcf2d inherit pub_methods_classOpenMS_1_1StringList"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="inherited"></a>
Additional Inherited Members</h2></td></tr>
<tr class="inherit_header pub_types_classOpenMS_1_1StringList"><td colspan="2" onclick="javascript:toggleInherit('pub_types_classOpenMS_1_1StringList')"><img src="closed.png" alt="-"/>&#160;Public Types inherited from <a class="el" href="classOpenMS_1_1StringList.html">StringList</a></td></tr>
<tr class="memitem:a52cf141ce292251c9c6d7c22f296cbd5 inherit pub_types_classOpenMS_1_1StringList"><td class="memItemLeft" align="right" valign="top">typedef iterator&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1StringList.html#a52cf141ce292251c9c6d7c22f296cbd5">Iterator</a></td></tr>
<tr class="memdesc:a52cf141ce292251c9c6d7c22f296cbd5 inherit pub_types_classOpenMS_1_1StringList"><td class="mdescLeft">&#160;</td><td class="mdescRight">Mutable iterator.  <a href="#a52cf141ce292251c9c6d7c22f296cbd5">More...</a><br/></td></tr>
<tr class="separator:a52cf141ce292251c9c6d7c22f296cbd5 inherit pub_types_classOpenMS_1_1StringList"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a67945f8464b125c988ded2dd2cfdf782 inherit pub_types_classOpenMS_1_1StringList"><td class="memItemLeft" align="right" valign="top">typedef const_iterator&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1StringList.html#a67945f8464b125c988ded2dd2cfdf782">ConstIterator</a></td></tr>
<tr class="memdesc:a67945f8464b125c988ded2dd2cfdf782 inherit pub_types_classOpenMS_1_1StringList"><td class="mdescLeft">&#160;</td><td class="mdescRight">Non-mutable iterator.  <a href="#a67945f8464b125c988ded2dd2cfdf782">More...</a><br/></td></tr>
<tr class="separator:a67945f8464b125c988ded2dd2cfdf782 inherit pub_types_classOpenMS_1_1StringList"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a419f3ce215cc5ae6ab8bf596b7dbcd87 inherit pub_types_classOpenMS_1_1StringList"><td class="memItemLeft" align="right" valign="top">typedef reverse_iterator&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1StringList.html#a419f3ce215cc5ae6ab8bf596b7dbcd87">ReverseIterator</a></td></tr>
<tr class="memdesc:a419f3ce215cc5ae6ab8bf596b7dbcd87 inherit pub_types_classOpenMS_1_1StringList"><td class="mdescLeft">&#160;</td><td class="mdescRight">Mutable reverse iterator.  <a href="#a419f3ce215cc5ae6ab8bf596b7dbcd87">More...</a><br/></td></tr>
<tr class="separator:a419f3ce215cc5ae6ab8bf596b7dbcd87 inherit pub_types_classOpenMS_1_1StringList"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a0d932b1f5b5182beddc9840ea6e134c7 inherit pub_types_classOpenMS_1_1StringList"><td class="memItemLeft" align="right" valign="top">typedef const_reverse_iterator&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1StringList.html#a0d932b1f5b5182beddc9840ea6e134c7">ConstReverseIterator</a></td></tr>
<tr class="memdesc:a0d932b1f5b5182beddc9840ea6e134c7 inherit pub_types_classOpenMS_1_1StringList"><td class="mdescLeft">&#160;</td><td class="mdescRight">Non-mutable reverse iterator.  <a href="#a0d932b1f5b5182beddc9840ea6e134c7">More...</a><br/></td></tr>
<tr class="separator:a0d932b1f5b5182beddc9840ea6e134c7 inherit pub_types_classOpenMS_1_1StringList"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pub_static_methods_classOpenMS_1_1StringList"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classOpenMS_1_1StringList')"><img src="closed.png" alt="-"/>&#160;Static Public Member Functions inherited from <a class="el" href="classOpenMS_1_1StringList.html">StringList</a></td></tr>
<tr class="memitem:a5f86b59b547048311dd50df5fb6d3bb5 inherit pub_static_methods_classOpenMS_1_1StringList"><td class="memItemLeft" align="right" valign="top">static <a class="el" href="classOpenMS_1_1StringList.html">StringList</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1StringList.html#a5f86b59b547048311dd50df5fb6d3bb5">create</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;list, const char splitter= ',')</td></tr>
<tr class="memdesc:a5f86b59b547048311dd50df5fb6d3bb5 inherit pub_static_methods_classOpenMS_1_1StringList"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns a list that is created by splitting the given (comma-separated) string (<a class="el" href="classOpenMS_1_1String.html" title="A more convenient string class. ">String</a> are not trimmed!)  <a href="#a5f86b59b547048311dd50df5fb6d3bb5">More...</a><br/></td></tr>
<tr class="separator:a5f86b59b547048311dd50df5fb6d3bb5 inherit pub_static_methods_classOpenMS_1_1StringList"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ac8e505cda2445d4d8e9e9c6a75615f9c inherit pub_static_methods_classOpenMS_1_1StringList"><td class="memItemLeft" align="right" valign="top">static <a class="el" href="classOpenMS_1_1StringList.html">StringList</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1StringList.html#ac8e505cda2445d4d8e9e9c6a75615f9c">create</a> (const char *const *list, <a class="el" href="group__Concept.html#gaba0996d26f7be2572973245b51852757">UInt</a> size)</td></tr>
<tr class="memdesc:ac8e505cda2445d4d8e9e9c6a75615f9c inherit pub_static_methods_classOpenMS_1_1StringList"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns a list that is created from an array of char*.  <a href="#ac8e505cda2445d4d8e9e9c6a75615f9c">More...</a><br/></td></tr>
<tr class="separator:ac8e505cda2445d4d8e9e9c6a75615f9c inherit pub_static_methods_classOpenMS_1_1StringList"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pub_attribs_classstd_1_1vector"><td colspan="2" onclick="javascript:toggleInherit('pub_attribs_classstd_1_1vector')"><img src="closed.png" alt="-"/>&#160;Public Attributes inherited from <a class="el" href="classstd_1_1vector.html">vector&lt; T &gt;</a></td></tr>
<tr class="memitem:af400dbe3fe1572c567f882190c772196 inherit pub_attribs_classstd_1_1vector"><td class="memItemLeft" align="right" valign="top">T&#160;</td><td class="memItemRight" valign="bottom"><b>elements</b></td></tr>
<tr class="memdesc:af400dbe3fe1572c567f882190c772196 inherit pub_attribs_classstd_1_1vector"><td class="mdescLeft">&#160;</td><td class="mdescRight">STL member.  <a href="#af400dbe3fe1572c567f882190c772196">More...</a><br/></td></tr>
<tr class="separator:af400dbe3fe1572c567f882190c772196 inherit pub_attribs_classstd_1_1vector"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table>
<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>This class provides some basic file handling methods for text files. </p>
</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
<a class="anchor" id="a65b3f2d69d322ea4e246e5bb75508b7f"></a>
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          <td class="memname"><a class="el" href="classOpenMS_1_1TextFile.html">TextFile</a> </td>
          <td>(</td>
          <td class="paramname"></td><td>)</td>
          <td></td>
        </tr>
      </table>
</div><div class="memdoc">

<p>Default constructor. </p>

</div>
</div>
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  <td class="mlabels-left">
      <table class="memname">
        <tr>
          <td class="memname">virtual ~<a class="el" href="classOpenMS_1_1TextFile.html">TextFile</a> </td>
          <td>(</td>
          <td class="paramname"></td><td>)</td>
          <td></td>
        </tr>
      </table>
  </td>
  <td class="mlabels-right">
<span class="mlabels"><span class="mlabel">virtual</span></span>  </td>
  </tr>
</table>
</div><div class="memdoc">

<p>destructor </p>

</div>
</div>
<a class="anchor" id="ae8a863607d0c85502d039fc6da440ca0"></a>
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          <td class="memname"><a class="el" href="classOpenMS_1_1TextFile.html">TextFile</a> </td>
          <td>(</td>
          <td class="paramtype">const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;&#160;</td>
          <td class="paramname"><em>filename</em>, </td>
        </tr>
        <tr>
          <td class="paramkey"></td>
          <td></td>
          <td class="paramtype">bool&#160;</td>
          <td class="paramname"><em>trim_lines</em> = <code>false</code>, </td>
        </tr>
        <tr>
          <td class="paramkey"></td>
          <td></td>
          <td class="paramtype"><a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a>&#160;</td>
          <td class="paramname"><em>first_n</em> = <code>-1</code>&#160;</td>
        </tr>
        <tr>
          <td></td>
          <td>)</td>
          <td></td><td></td>
        </tr>
      </table>
</div><div class="memdoc">

<p>Constructor with filename. </p>
<dl class="params"><dt>Parameters</dt><dd>
  <table class="params">
    <tr><td class="paramname">filename</td><td>The input file name. </td></tr>
    <tr><td class="paramname">trim_lines</td><td>Whether or not the lines are trimmed when reading them from file. </td></tr>
    <tr><td class="paramname">first_n</td><td>If set, only <code>first_n</code> lines the lines from the beginning of the file are read.</td></tr>
  </table>
  </dd>
</dl>
<dl class="exception"><dt>Exceptions</dt><dd>
  <table class="exception">
    <tr><td class="paramname"><a class="el" href="classOpenMS_1_1Exception_1_1FileNotFound.html" title="File not found exception. ">Exception::FileNotFound</a></td><td>is thrown if the file could not be opened. </td></tr>
  </table>
  </dd>
</dl>

</div>
</div>
<h2 class="groupheader">Member Function Documentation</h2>
<a class="anchor" id="a9b9784a42f589ad6f249066624a80591"></a>
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          <td class="memname">void load </td>
          <td>(</td>
          <td class="paramtype">const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;&#160;</td>
          <td class="paramname"><em>filename</em>, </td>
        </tr>
        <tr>
          <td class="paramkey"></td>
          <td></td>
          <td class="paramtype">bool&#160;</td>
          <td class="paramname"><em>trim_lines</em> = <code>false</code>, </td>
        </tr>
        <tr>
          <td class="paramkey"></td>
          <td></td>
          <td class="paramtype"><a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a>&#160;</td>
          <td class="paramname"><em>first_n</em> = <code>-1</code>&#160;</td>
        </tr>
        <tr>
          <td></td>
          <td>)</td>
          <td></td><td></td>
        </tr>
      </table>
</div><div class="memdoc">

<p>Loads data from a text file. </p>
<dl class="params"><dt>Parameters</dt><dd>
  <table class="params">
    <tr><td class="paramname">filename</td><td>The input file name. </td></tr>
    <tr><td class="paramname">trim_lines</td><td>Whether or not the lines are trimmed when reading them from file. </td></tr>
    <tr><td class="paramname">first_n</td><td>If set, only <code>first_n</code> lines the lines from the beginning of the file are read.</td></tr>
  </table>
  </dd>
</dl>
<dl class="exception"><dt>Exceptions</dt><dd>
  <table class="exception">
    <tr><td class="paramname"><a class="el" href="classOpenMS_1_1Exception_1_1FileNotFound.html" title="File not found exception. ">Exception::FileNotFound</a></td><td>is thrown if the file could not be opened. </td></tr>
  </table>
  </dd>
</dl>

</div>
</div>
<a class="anchor" id="a4fb93f999151e70a0f506c4c36f63fd7"></a>
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          <td class="memname">void store </td>
          <td>(</td>
          <td class="paramtype">const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;&#160;</td>
          <td class="paramname"><em>filename</em></td><td>)</td>
          <td></td>
        </tr>
      </table>
</div><div class="memdoc">

<p>Writes the data to a file. </p>
<dl class="section note"><dt>Note</dt><dd>this function uses unix-style linebreaks</dd></dl>
<dl class="exception"><dt>Exceptions</dt><dd>
  <table class="exception">
    <tr><td class="paramname"><a class="el" href="classOpenMS_1_1Exception_1_1UnableToCreateFile.html" title="Unable to create file exception. ">Exception::UnableToCreateFile</a></td><td>is thrown if the file could not be created </td></tr>
  </table>
  </dd>
</dl>

<p>Referenced by <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#ad608d4f3d2a370fe2c1672c7818146b4">FeatureFinderAlgorithmPicked&lt; PeakType, FeatureType &gt;::writeFeatureDebugInfo_()</a>.</p>

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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:31 using doxygen 1.8.5</font></TD>
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