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<HTML>
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<TITLE>TransformationModelLinear Class Reference</TITLE>
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<li class="navelem"><a class="el" href="namespaceOpenMS.html">OpenMS</a></li><li class="navelem"><a class="el" href="classOpenMS_1_1TransformationModelLinear.html">TransformationModelLinear</a></li> </ul>
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<div class="summary">
<a href="#pub-methods">Public Member Functions</a> |
<a href="#pub-static-methods">Static Public Member Functions</a> |
<a href="#pro-attribs">Protected Attributes</a> |
<a href="classOpenMS_1_1TransformationModelLinear-members.html">List of all members</a> </div>
<div class="headertitle">
<div class="title">TransformationModelLinear Class Reference<div class="ingroups"><a class="el" href="group__MapAlignment.html">MapAlignment</a></div></div> </div>
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<p>Linear model for transformations.
<a href="classOpenMS_1_1TransformationModelLinear.html#details">More...</a></p>
<p><code>#include <<a class="el" href="TransformationModel_8h_source.html">OpenMS/ANALYSIS/MAPMATCHING/TransformationModel.h</a>></code></p>
<div class="dynheader">
Inheritance diagram for TransformationModelLinear:</div>
<div class="dyncontent">
<div class="center">
<img src="classOpenMS_1_1TransformationModelLinear.png" usemap="#TransformationModelLinear_map" alt=""/>
<map id="TransformationModelLinear_map" name="TransformationModelLinear_map">
<area href="classOpenMS_1_1TransformationModel.html" title="Base class for transformation models. " alt="TransformationModel" shape="rect" coords="0,0,167,24"/>
</map>
</div></div>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:a21a3debb15429fd0860f74ba73b8a47e"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TransformationModelLinear.html#a21a3debb15429fd0860f74ba73b8a47e">TransformationModelLinear</a> (const <a class="el" href="classOpenMS_1_1TransformationModel.html#a4067970d097e9b2f62de2058276b0c24">DataPoints</a> &data, const <a class="el" href="classOpenMS_1_1Param.html">Param</a> &params)</td></tr>
<tr class="memdesc:a21a3debb15429fd0860f74ba73b8a47e"><td class="mdescLeft"> </td><td class="mdescRight">Constructor. <a href="#a21a3debb15429fd0860f74ba73b8a47e">More...</a><br/></td></tr>
<tr class="separator:a21a3debb15429fd0860f74ba73b8a47e"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a80eb9727e140a0c508961a736a505d22"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TransformationModelLinear.html#a80eb9727e140a0c508961a736a505d22">~TransformationModelLinear</a> ()</td></tr>
<tr class="memdesc:a80eb9727e140a0c508961a736a505d22"><td class="mdescLeft"> </td><td class="mdescRight">Destructor. <a href="#a80eb9727e140a0c508961a736a505d22">More...</a><br/></td></tr>
<tr class="separator:a80eb9727e140a0c508961a736a505d22"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a1562399d507d343b4cb759a6e3d5470a"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TransformationModelLinear.html#a1562399d507d343b4cb759a6e3d5470a">evaluate</a> (const <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> value) const </td></tr>
<tr class="memdesc:a1562399d507d343b4cb759a6e3d5470a"><td class="mdescLeft"> </td><td class="mdescRight">Evaluates the model at the given value. <a href="#a1562399d507d343b4cb759a6e3d5470a">More...</a><br/></td></tr>
<tr class="separator:a1562399d507d343b4cb759a6e3d5470a"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a95d2535c860edfd293b86d4d09603800"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TransformationModelLinear.html#a95d2535c860edfd293b86d4d09603800">getParameters</a> (<a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> &slope, <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> &intercept) const </td></tr>
<tr class="memdesc:a95d2535c860edfd293b86d4d09603800"><td class="mdescLeft"> </td><td class="mdescRight">Gets the "real" parameters. <a href="#a95d2535c860edfd293b86d4d09603800">More...</a><br/></td></tr>
<tr class="separator:a95d2535c860edfd293b86d4d09603800"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a7fa1616cc61c19a5efcc863c950f7f30"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TransformationModelLinear.html#a7fa1616cc61c19a5efcc863c950f7f30">invert</a> ()</td></tr>
<tr class="memdesc:a7fa1616cc61c19a5efcc863c950f7f30"><td class="mdescLeft"> </td><td class="mdescRight">Computes the inverse. <a href="#a7fa1616cc61c19a5efcc863c950f7f30">More...</a><br/></td></tr>
<tr class="separator:a7fa1616cc61c19a5efcc863c950f7f30"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_methods_classOpenMS_1_1TransformationModel"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classOpenMS_1_1TransformationModel')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classOpenMS_1_1TransformationModel.html">TransformationModel</a></td></tr>
<tr class="memitem:a2b84910d6d7bd930ff4651f01616d95f inherit pub_methods_classOpenMS_1_1TransformationModel"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TransformationModel.html#a2b84910d6d7bd930ff4651f01616d95f">TransformationModel</a> ()</td></tr>
<tr class="memdesc:a2b84910d6d7bd930ff4651f01616d95f inherit pub_methods_classOpenMS_1_1TransformationModel"><td class="mdescLeft"> </td><td class="mdescRight">Constructor. <a href="#a2b84910d6d7bd930ff4651f01616d95f">More...</a><br/></td></tr>
<tr class="separator:a2b84910d6d7bd930ff4651f01616d95f inherit pub_methods_classOpenMS_1_1TransformationModel"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a30dddf822bf60a5b250a5b3da95e2bd4 inherit pub_methods_classOpenMS_1_1TransformationModel"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TransformationModel.html#a30dddf822bf60a5b250a5b3da95e2bd4">TransformationModel</a> (const <a class="el" href="classOpenMS_1_1TransformationModel.html#a4067970d097e9b2f62de2058276b0c24">TransformationModel::DataPoints</a> &, const <a class="el" href="classOpenMS_1_1Param.html">Param</a> &)</td></tr>
<tr class="memdesc:a30dddf822bf60a5b250a5b3da95e2bd4 inherit pub_methods_classOpenMS_1_1TransformationModel"><td class="mdescLeft"> </td><td class="mdescRight">Alternative constructor (derived classes should implement this one!) <a href="#a30dddf822bf60a5b250a5b3da95e2bd4">More...</a><br/></td></tr>
<tr class="separator:a30dddf822bf60a5b250a5b3da95e2bd4 inherit pub_methods_classOpenMS_1_1TransformationModel"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a7f0376d313bdd03d5b99111f85a589bd inherit pub_methods_classOpenMS_1_1TransformationModel"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TransformationModel.html#a7f0376d313bdd03d5b99111f85a589bd">~TransformationModel</a> ()</td></tr>
<tr class="memdesc:a7f0376d313bdd03d5b99111f85a589bd inherit pub_methods_classOpenMS_1_1TransformationModel"><td class="mdescLeft"> </td><td class="mdescRight">Destructor. <a href="#a7f0376d313bdd03d5b99111f85a589bd">More...</a><br/></td></tr>
<tr class="separator:a7f0376d313bdd03d5b99111f85a589bd inherit pub_methods_classOpenMS_1_1TransformationModel"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a4d012735f1d877dc02a0041f459b7891 inherit pub_methods_classOpenMS_1_1TransformationModel"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TransformationModel.html#a4d012735f1d877dc02a0041f459b7891">getParameters</a> (<a class="el" href="classOpenMS_1_1Param.html">Param</a> &params) const </td></tr>
<tr class="memdesc:a4d012735f1d877dc02a0041f459b7891 inherit pub_methods_classOpenMS_1_1TransformationModel"><td class="mdescLeft"> </td><td class="mdescRight">Gets the (actual) parameters. <a href="#a4d012735f1d877dc02a0041f459b7891">More...</a><br/></td></tr>
<tr class="separator:a4d012735f1d877dc02a0041f459b7891 inherit pub_methods_classOpenMS_1_1TransformationModel"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-static-methods"></a>
Static Public Member Functions</h2></td></tr>
<tr class="memitem:a39100a3d6235b7512df3d2731d016934"><td class="memItemLeft" align="right" valign="top">static void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TransformationModelLinear.html#a39100a3d6235b7512df3d2731d016934">getDefaultParameters</a> (<a class="el" href="classOpenMS_1_1Param.html">Param</a> &params)</td></tr>
<tr class="memdesc:a39100a3d6235b7512df3d2731d016934"><td class="mdescLeft"> </td><td class="mdescRight">Gets the default parameters. <a href="#a39100a3d6235b7512df3d2731d016934">More...</a><br/></td></tr>
<tr class="separator:a39100a3d6235b7512df3d2731d016934"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pub_static_methods_classOpenMS_1_1TransformationModel"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classOpenMS_1_1TransformationModel')"><img src="closed.png" alt="-"/> Static Public Member Functions inherited from <a class="el" href="classOpenMS_1_1TransformationModel.html">TransformationModel</a></td></tr>
<tr class="memitem:a39100a3d6235b7512df3d2731d016934 inherit pub_static_methods_classOpenMS_1_1TransformationModel"><td class="memItemLeft" align="right" valign="top">static void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TransformationModel.html#a39100a3d6235b7512df3d2731d016934">getDefaultParameters</a> (<a class="el" href="classOpenMS_1_1Param.html">Param</a> &params)</td></tr>
<tr class="memdesc:a39100a3d6235b7512df3d2731d016934 inherit pub_static_methods_classOpenMS_1_1TransformationModel"><td class="mdescLeft"> </td><td class="mdescRight">Gets the default parameters. <a href="#a39100a3d6235b7512df3d2731d016934">More...</a><br/></td></tr>
<tr class="separator:a39100a3d6235b7512df3d2731d016934 inherit pub_static_methods_classOpenMS_1_1TransformationModel"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pro-attribs"></a>
Protected Attributes</h2></td></tr>
<tr class="memitem:a7810770fb0835d5813492491bc0e5e87"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TransformationModelLinear.html#a7810770fb0835d5813492491bc0e5e87">slope_</a></td></tr>
<tr class="memdesc:a7810770fb0835d5813492491bc0e5e87"><td class="mdescLeft"> </td><td class="mdescRight">Parameters of the linear model. <a href="#a7810770fb0835d5813492491bc0e5e87">More...</a><br/></td></tr>
<tr class="separator:a7810770fb0835d5813492491bc0e5e87"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a257ff0c4f1b2ff5b9ddbe141ed5cacd5"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TransformationModelLinear.html#a257ff0c4f1b2ff5b9ddbe141ed5cacd5">intercept_</a></td></tr>
<tr class="separator:a257ff0c4f1b2ff5b9ddbe141ed5cacd5"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aa5d41f3562d8f5dfc128c7fe47202275"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TransformationModelLinear.html#aa5d41f3562d8f5dfc128c7fe47202275">data_given_</a></td></tr>
<tr class="memdesc:aa5d41f3562d8f5dfc128c7fe47202275"><td class="mdescLeft"> </td><td class="mdescRight">Was the model estimated from data? <a href="#aa5d41f3562d8f5dfc128c7fe47202275">More...</a><br/></td></tr>
<tr class="separator:aa5d41f3562d8f5dfc128c7fe47202275"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ab4bda0318b186ad5113740ee5102ddb6"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TransformationModelLinear.html#ab4bda0318b186ad5113740ee5102ddb6">symmetric_</a></td></tr>
<tr class="memdesc:ab4bda0318b186ad5113740ee5102ddb6"><td class="mdescLeft"> </td><td class="mdescRight">Use symmetric regression? <a href="#ab4bda0318b186ad5113740ee5102ddb6">More...</a><br/></td></tr>
<tr class="separator:ab4bda0318b186ad5113740ee5102ddb6"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="inherit_header pro_attribs_classOpenMS_1_1TransformationModel"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classOpenMS_1_1TransformationModel')"><img src="closed.png" alt="-"/> Protected Attributes inherited from <a class="el" href="classOpenMS_1_1TransformationModel.html">TransformationModel</a></td></tr>
<tr class="memitem:a20793411214daa54c7571bf9fccd5ccf inherit pro_attribs_classOpenMS_1_1TransformationModel"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Param.html">Param</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TransformationModel.html#a20793411214daa54c7571bf9fccd5ccf">params_</a></td></tr>
<tr class="memdesc:a20793411214daa54c7571bf9fccd5ccf inherit pro_attribs_classOpenMS_1_1TransformationModel"><td class="mdescLeft"> </td><td class="mdescRight">Parameters. <a href="#a20793411214daa54c7571bf9fccd5ccf">More...</a><br/></td></tr>
<tr class="separator:a20793411214daa54c7571bf9fccd5ccf inherit pro_attribs_classOpenMS_1_1TransformationModel"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="inherited"></a>
Additional Inherited Members</h2></td></tr>
<tr class="inherit_header pub_types_classOpenMS_1_1TransformationModel"><td colspan="2" onclick="javascript:toggleInherit('pub_types_classOpenMS_1_1TransformationModel')"><img src="closed.png" alt="-"/> Public Types inherited from <a class="el" href="classOpenMS_1_1TransformationModel.html">TransformationModel</a></td></tr>
<tr class="memitem:ac93bbaab8952124bfb6a32870b773ac1 inherit pub_types_classOpenMS_1_1TransformationModel"><td class="memItemLeft" align="right" valign="top">typedef std::pair< <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a>, <br class="typebreak"/>
<a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TransformationModel.html#ac93bbaab8952124bfb6a32870b773ac1">DataPoint</a></td></tr>
<tr class="memdesc:ac93bbaab8952124bfb6a32870b773ac1 inherit pub_types_classOpenMS_1_1TransformationModel"><td class="mdescLeft"> </td><td class="mdescRight">Coordinate pair. <a href="#ac93bbaab8952124bfb6a32870b773ac1">More...</a><br/></td></tr>
<tr class="separator:ac93bbaab8952124bfb6a32870b773ac1 inherit pub_types_classOpenMS_1_1TransformationModel"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a4067970d097e9b2f62de2058276b0c24 inherit pub_types_classOpenMS_1_1TransformationModel"><td class="memItemLeft" align="right" valign="top">typedef std::vector< <a class="el" href="classOpenMS_1_1TransformationModel.html#ac93bbaab8952124bfb6a32870b773ac1">DataPoint</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TransformationModel.html#a4067970d097e9b2f62de2058276b0c24">DataPoints</a></td></tr>
<tr class="memdesc:a4067970d097e9b2f62de2058276b0c24 inherit pub_types_classOpenMS_1_1TransformationModel"><td class="mdescLeft"> </td><td class="mdescRight">Vector of coordinate pairs. <a href="#a4067970d097e9b2f62de2058276b0c24">More...</a><br/></td></tr>
<tr class="separator:a4067970d097e9b2f62de2058276b0c24 inherit pub_types_classOpenMS_1_1TransformationModel"><td class="memSeparator" colspan="2"> </td></tr>
</table>
<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>Linear model for transformations. </p>
<p>The model can be inferred from data or specified using explicit parameters. If data is given, a least squares fit is used to find the model parameters (slope and intercept). Depending on parameter <code>symmetric_regression</code>, a normal regression (<em>y</em> on <em>x</em>) or symmetric regression ( <img class="formulaInl" alt="$ y - x $" src="form_28.png"/> on <img class="formulaInl" alt="$ y + x $" src="form_29.png"/>) is performed.</p>
<p>Without data, the model can be specified by giving the parameters <code>slope</code> and <code>intercept</code> explicitly. </p>
</div><h2 class="groupheader">Constructor & Destructor Documentation</h2>
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<p>Constructor. </p>
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<td class="memname">~<a class="el" href="classOpenMS_1_1TransformationModelLinear.html">TransformationModelLinear</a> </td>
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<p>Destructor. </p>
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<td class="memname">virtual <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> evaluate </td>
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<p>Evaluates the model at the given value. </p>
<p>Reimplemented from <a class="el" href="classOpenMS_1_1TransformationModel.html#a1562399d507d343b4cb759a6e3d5470a">TransformationModel</a>.</p>
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<td class="memname">static void getDefaultParameters </td>
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<p>Gets the default parameters. </p>
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<td class="memname">void getParameters </td>
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<td class="paramtype"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> & </td>
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<p>Gets the "real" parameters. </p>
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<p>Computes the inverse. </p>
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<h2 class="groupheader">Member Data Documentation</h2>
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<td class="memname">bool data_given_</td>
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<p>Was the model estimated from data? </p>
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<td class="memname"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> intercept_</td>
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<td class="memname"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> slope_</td>
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<p>Parameters of the linear model. </p>
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<td class="memname">bool symmetric_</td>
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<p>Use symmetric regression? </p>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:26 using doxygen 1.8.5</font></TD>
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