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<HTML>
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<TITLE>WeightWrapper Class Reference</TITLE>
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<li class="navelem"><a class="el" href="namespaceOpenMS.html">OpenMS</a></li><li class="navelem"><a class="el" href="classOpenMS_1_1WeightWrapper.html">WeightWrapper</a></li> </ul>
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<div class="header">
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<a href="#pub-types">Public Types</a> |
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<div class="title">WeightWrapper Class Reference</div> </div>
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<div class="contents">
<p>Encapsulated weight queries to simplify mono vs average weight computation.
<a href="classOpenMS_1_1WeightWrapper.html#details">More...</a></p>
<p><code>#include <<a class="el" href="WeightWrapper_8h_source.html">OpenMS/CHEMISTRY/WeightWrapper.h</a>></code></p>
<div class="dynheader">
Inheritance diagram for WeightWrapper:</div>
<div class="dyncontent">
<div class="center">
<img src="classOpenMS_1_1WeightWrapper.png" usemap="#WeightWrapper_map" alt=""/>
<map id="WeightWrapper_map" name="WeightWrapper_map">
<area href="classOpenMS_1_1SuffixArrayPeptideFinder.html" title="wrapper for easy use of sufArray " alt="SuffixArrayPeptideFinder" shape="rect" coords="0,56,186,80"/>
<area href="classOpenMS_1_1SuffixArraySeqan.html" title="Class that uses SEQAN library for a suffix array. It can be used to find peptide Candidates for a MS ..." alt="SuffixArraySeqan" shape="rect" coords="196,56,382,80"/>
<area href="classOpenMS_1_1SuffixArrayTrypticCompressed.html" title="Class that implements a suffix array for a String. It can be used to find peptide Candidates for a MS..." alt="SuffixArrayTrypticCompressed" shape="rect" coords="392,56,578,80"/>
<area href="classOpenMS_1_1SuffixArrayTrypticSeqan.html" title="Class that uses SEQAN library for a suffix array. It can be used to find peptide Candidates for a MS ..." alt="SuffixArrayTrypticSeqan" shape="rect" coords="196,112,382,136"/>
</map>
</div></div>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-types"></a>
Public Types</h2></td></tr>
<tr class="memitem:aa0e0675e46f34052468f523f1c8aff2b"><td class="memItemLeft" align="right" valign="top">enum  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1WeightWrapper.html#aa0e0675e46f34052468f523f1c8aff2b">WEIGHTMODE</a> { <a class="el" href="classOpenMS_1_1WeightWrapper.html#aa0e0675e46f34052468f523f1c8aff2bab6f2220659ddcb84a0622d4aa4e0b112">AVERAGE</a> = 0,
<a class="el" href="classOpenMS_1_1WeightWrapper.html#aa0e0675e46f34052468f523f1c8aff2ba3828195437a1112429b5c7a3e8780570">MONO</a>,
<a class="el" href="classOpenMS_1_1WeightWrapper.html#aa0e0675e46f34052468f523f1c8aff2ba4226c2437cbb49f44511f47e1bde3109">SIZE_OF_WEIGHTMODE</a>
}</td></tr>
<tr class="separator:aa0e0675e46f34052468f523f1c8aff2b"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:ad17dfc0067cbade3b4862477bb535c83"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1WeightWrapper.html#ad17dfc0067cbade3b4862477bb535c83">WeightWrapper</a> ()</td></tr>
<tr class="memdesc:ad17dfc0067cbade3b4862477bb535c83"><td class="mdescLeft"> </td><td class="mdescRight">constructor <a href="#ad17dfc0067cbade3b4862477bb535c83">More...</a><br/></td></tr>
<tr class="separator:ad17dfc0067cbade3b4862477bb535c83"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a60ffdc2b9c2147851399c529b1a1fd51"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1WeightWrapper.html#a60ffdc2b9c2147851399c529b1a1fd51">WeightWrapper</a> (const <a class="el" href="classOpenMS_1_1WeightWrapper.html#aa0e0675e46f34052468f523f1c8aff2b">WEIGHTMODE</a> weight_mode)</td></tr>
<tr class="memdesc:a60ffdc2b9c2147851399c529b1a1fd51"><td class="mdescLeft"> </td><td class="mdescRight">constructor <a href="#a60ffdc2b9c2147851399c529b1a1fd51">More...</a><br/></td></tr>
<tr class="separator:a60ffdc2b9c2147851399c529b1a1fd51"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a0f2c08d0cebb514fee6ba050bb17aa0f"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1WeightWrapper.html#a0f2c08d0cebb514fee6ba050bb17aa0f">~WeightWrapper</a> ()</td></tr>
<tr class="memdesc:a0f2c08d0cebb514fee6ba050bb17aa0f"><td class="mdescLeft"> </td><td class="mdescRight">destructor <a href="#a0f2c08d0cebb514fee6ba050bb17aa0f">More...</a><br/></td></tr>
<tr class="separator:a0f2c08d0cebb514fee6ba050bb17aa0f"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:acf810b578f701801ea752d534d7fcbe9"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1WeightWrapper.html#acf810b578f701801ea752d534d7fcbe9">WeightWrapper</a> (const <a class="el" href="classOpenMS_1_1WeightWrapper.html">WeightWrapper</a> &source)</td></tr>
<tr class="memdesc:acf810b578f701801ea752d534d7fcbe9"><td class="mdescLeft"> </td><td class="mdescRight">copy constructor <a href="#acf810b578f701801ea752d534d7fcbe9">More...</a><br/></td></tr>
<tr class="separator:acf810b578f701801ea752d534d7fcbe9"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a86f49dcf25cd06d439db0390ae5604b5"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1WeightWrapper.html#a86f49dcf25cd06d439db0390ae5604b5">setWeightMode</a> (const <a class="el" href="classOpenMS_1_1WeightWrapper.html#aa0e0675e46f34052468f523f1c8aff2b">WEIGHTMODE</a> mode)</td></tr>
<tr class="memdesc:a86f49dcf25cd06d439db0390ae5604b5"><td class="mdescLeft"> </td><td class="mdescRight">Sets the weight mode (MONO or AVERAGE) <a href="#a86f49dcf25cd06d439db0390ae5604b5">More...</a><br/></td></tr>
<tr class="separator:a86f49dcf25cd06d439db0390ae5604b5"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a12c0a3ef8cbe7321db6724f92ba07730"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1WeightWrapper.html#aa0e0675e46f34052468f523f1c8aff2b">WEIGHTMODE</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1WeightWrapper.html#a12c0a3ef8cbe7321db6724f92ba07730">getWeightMode</a> () const </td></tr>
<tr class="memdesc:a12c0a3ef8cbe7321db6724f92ba07730"><td class="mdescLeft"> </td><td class="mdescRight">Gets the weight mode (MONO or AVERAGE) <a href="#a12c0a3ef8cbe7321db6724f92ba07730">More...</a><br/></td></tr>
<tr class="separator:a12c0a3ef8cbe7321db6724f92ba07730"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:af26fbe119eda2461447f2312786531f6"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1WeightWrapper.html#af26fbe119eda2461447f2312786531f6">getWeight</a> (const <a class="el" href="classOpenMS_1_1AASequence.html">AASequence</a> &aa) const </td></tr>
<tr class="memdesc:af26fbe119eda2461447f2312786531f6"><td class="mdescLeft"> </td><td class="mdescRight">returns the weight of either mono or average value <a href="#af26fbe119eda2461447f2312786531f6">More...</a><br/></td></tr>
<tr class="separator:af26fbe119eda2461447f2312786531f6"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a83b54901c7aa15994c0c665b8249e0f7"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1WeightWrapper.html#a83b54901c7aa15994c0c665b8249e0f7">getWeight</a> (const <a class="el" href="classOpenMS_1_1EmpiricalFormula.html">EmpiricalFormula</a> &ef) const </td></tr>
<tr class="memdesc:a83b54901c7aa15994c0c665b8249e0f7"><td class="mdescLeft"> </td><td class="mdescRight">returns the weight of either mono or average value <a href="#a83b54901c7aa15994c0c665b8249e0f7">More...</a><br/></td></tr>
<tr class="separator:a83b54901c7aa15994c0c665b8249e0f7"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:acf259e90e6852e4baab243bd5eff44e5"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1WeightWrapper.html#acf259e90e6852e4baab243bd5eff44e5">getWeight</a> (const <a class="el" href="classOpenMS_1_1Residue.html">Residue</a> &r, <a class="el" href="classOpenMS_1_1Residue.html#a7651af21f9cf8ed6445415903fc6cb48">Residue::ResidueType</a> res_type=<a class="el" href="classOpenMS_1_1Residue.html#a7651af21f9cf8ed6445415903fc6cb48a8b7c5cd8bd8eb51ee6d3fd0eac584679">Residue::Full</a>) const </td></tr>
<tr class="memdesc:acf259e90e6852e4baab243bd5eff44e5"><td class="mdescLeft"> </td><td class="mdescRight">returns the weight of either mono or average value <a href="#acf259e90e6852e4baab243bd5eff44e5">More...</a><br/></td></tr>
<tr class="separator:acf259e90e6852e4baab243bd5eff44e5"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-attribs"></a>
Private Attributes</h2></td></tr>
<tr class="memitem:a12af4a94d9fb3b6c7df696adadf02281"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1WeightWrapper.html#aa0e0675e46f34052468f523f1c8aff2b">WEIGHTMODE</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1WeightWrapper.html#a12af4a94d9fb3b6c7df696adadf02281">weight_mode_</a></td></tr>
<tr class="memdesc:a12af4a94d9fb3b6c7df696adadf02281"><td class="mdescLeft"> </td><td class="mdescRight">one of <a class="el" href="classOpenMS_1_1WeightWrapper.html#aa0e0675e46f34052468f523f1c8aff2b">WeightWrapper::WEIGHTMODE</a>'s values <a href="#a12af4a94d9fb3b6c7df696adadf02281">More...</a><br/></td></tr>
<tr class="separator:a12af4a94d9fb3b6c7df696adadf02281"><td class="memSeparator" colspan="2"> </td></tr>
</table>
<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>Encapsulated weight queries to simplify mono vs average weight computation. </p>
<p>Supports <a class="el" href="classOpenMS_1_1EmpiricalFormula.html" title="Representation of an empirical formula. ">EmpiricalFormula</a>'s and <a class="el" href="classOpenMS_1_1AASequence.html" title="Representation of a peptide/protein sequence. ">AASequence</a>'s getMonoWeight() and getAverageWeight() </p>
</div><h2 class="groupheader">Member Enumeration Documentation</h2>
<a class="anchor" id="aa0e0675e46f34052468f523f1c8aff2b"></a>
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<div class="memproto">
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<td class="memname">enum <a class="el" href="classOpenMS_1_1WeightWrapper.html#aa0e0675e46f34052468f523f1c8aff2b">WEIGHTMODE</a></td>
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</div><div class="memdoc">
<table class="fieldtable">
<tr><th colspan="2">Enumerator</th></tr><tr><td class="fieldname"><em><a class="anchor" id="aa0e0675e46f34052468f523f1c8aff2bab6f2220659ddcb84a0622d4aa4e0b112"></a>AVERAGE</em> </td><td class="fielddoc">
</td></tr>
<tr><td class="fieldname"><em><a class="anchor" id="aa0e0675e46f34052468f523f1c8aff2ba3828195437a1112429b5c7a3e8780570"></a>MONO</em> </td><td class="fielddoc">
</td></tr>
<tr><td class="fieldname"><em><a class="anchor" id="aa0e0675e46f34052468f523f1c8aff2ba4226c2437cbb49f44511f47e1bde3109"></a>SIZE_OF_WEIGHTMODE</em> </td><td class="fielddoc">
</td></tr>
</table>
</div>
</div>
<h2 class="groupheader">Constructor & Destructor Documentation</h2>
<a class="anchor" id="ad17dfc0067cbade3b4862477bb535c83"></a>
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<div class="memproto">
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<td class="memname"><a class="el" href="classOpenMS_1_1WeightWrapper.html">WeightWrapper</a> </td>
<td>(</td>
<td class="paramname"></td><td>)</td>
<td></td>
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</div><div class="memdoc">
<p>constructor </p>
</div>
</div>
<a class="anchor" id="a60ffdc2b9c2147851399c529b1a1fd51"></a>
<div class="memitem">
<div class="memproto">
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<td class="memname"><a class="el" href="classOpenMS_1_1WeightWrapper.html">WeightWrapper</a> </td>
<td>(</td>
<td class="paramtype">const <a class="el" href="classOpenMS_1_1WeightWrapper.html#aa0e0675e46f34052468f523f1c8aff2b">WEIGHTMODE</a> </td>
<td class="paramname"><em>weight_mode</em></td><td>)</td>
<td></td>
</tr>
</table>
</div><div class="memdoc">
<p>constructor </p>
</div>
</div>
<a class="anchor" id="a0f2c08d0cebb514fee6ba050bb17aa0f"></a>
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<td class="memname">virtual ~<a class="el" href="classOpenMS_1_1WeightWrapper.html">WeightWrapper</a> </td>
<td>(</td>
<td class="paramname"></td><td>)</td>
<td></td>
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</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">virtual</span></span> </td>
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<p>destructor </p>
</div>
</div>
<a class="anchor" id="acf810b578f701801ea752d534d7fcbe9"></a>
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<td class="memname"><a class="el" href="classOpenMS_1_1WeightWrapper.html">WeightWrapper</a> </td>
<td>(</td>
<td class="paramtype">const <a class="el" href="classOpenMS_1_1WeightWrapper.html">WeightWrapper</a> & </td>
<td class="paramname"><em>source</em></td><td>)</td>
<td></td>
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<p>copy constructor </p>
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</div>
<h2 class="groupheader">Member Function Documentation</h2>
<a class="anchor" id="af26fbe119eda2461447f2312786531f6"></a>
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<td class="memname"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> getWeight </td>
<td>(</td>
<td class="paramtype">const <a class="el" href="classOpenMS_1_1AASequence.html">AASequence</a> & </td>
<td class="paramname"><em>aa</em></td><td>)</td>
<td> const</td>
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<p>returns the weight of either mono or average value </p>
<p>Which weight is returned depends on the current weight-mode.</p>
<dl class="section return"><dt>Returns</dt><dd>DoubleReal weight in u </dd></dl>
</div>
</div>
<a class="anchor" id="a83b54901c7aa15994c0c665b8249e0f7"></a>
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<td class="memname"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> getWeight </td>
<td>(</td>
<td class="paramtype">const <a class="el" href="classOpenMS_1_1EmpiricalFormula.html">EmpiricalFormula</a> & </td>
<td class="paramname"><em>ef</em></td><td>)</td>
<td> const</td>
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<p>returns the weight of either mono or average value </p>
<p>Which weight is returned depends on the current weight-mode.</p>
<dl class="section return"><dt>Returns</dt><dd>DoubleReal weight in u </dd></dl>
</div>
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<a class="anchor" id="acf259e90e6852e4baab243bd5eff44e5"></a>
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<td class="memname"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> getWeight </td>
<td>(</td>
<td class="paramtype">const <a class="el" href="classOpenMS_1_1Residue.html">Residue</a> & </td>
<td class="paramname"><em>r</em>, </td>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype"><a class="el" href="classOpenMS_1_1Residue.html#a7651af21f9cf8ed6445415903fc6cb48">Residue::ResidueType</a> </td>
<td class="paramname"><em>res_type</em> = <code><a class="el" href="classOpenMS_1_1Residue.html#a7651af21f9cf8ed6445415903fc6cb48a8b7c5cd8bd8eb51ee6d3fd0eac584679">Residue::Full</a></code> </td>
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<td>)</td>
<td></td><td> const</td>
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<p>returns the weight of either mono or average value </p>
<p>Which weight is returned depends on the current weight-mode.</p>
<dl class="section return"><dt>Returns</dt><dd>DoubleReal weight in u </dd></dl>
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<td class="memname"><a class="el" href="classOpenMS_1_1WeightWrapper.html#aa0e0675e46f34052468f523f1c8aff2b">WEIGHTMODE</a> getWeightMode </td>
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<p>Gets the weight mode (MONO or AVERAGE) </p>
<p>Gets the mode in which <a class="el" href="classOpenMS_1_1WeightWrapper.html#af26fbe119eda2461447f2312786531f6" title="returns the weight of either mono or average value ">getWeight()</a> calls are answered. </p>
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<td class="memname">void setWeightMode </td>
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<td class="paramtype">const <a class="el" href="classOpenMS_1_1WeightWrapper.html#aa0e0675e46f34052468f523f1c8aff2b">WEIGHTMODE</a> </td>
<td class="paramname"><em>mode</em></td><td>)</td>
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<p>Sets the weight mode (MONO or AVERAGE) </p>
<p>Sets the mode in which <a class="el" href="classOpenMS_1_1WeightWrapper.html#af26fbe119eda2461447f2312786531f6" title="returns the weight of either mono or average value ">getWeight()</a> calls are answered. </p>
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<h2 class="groupheader">Member Data Documentation</h2>
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<td class="memname"><a class="el" href="classOpenMS_1_1WeightWrapper.html#aa0e0675e46f34052468f523f1c8aff2b">WEIGHTMODE</a> weight_mode_</td>
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<span class="mlabels"><span class="mlabel">private</span></span> </td>
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<p>one of <a class="el" href="classOpenMS_1_1WeightWrapper.html#aa0e0675e46f34052468f523f1c8aff2b">WeightWrapper::WEIGHTMODE</a>'s values </p>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:28 using doxygen 1.8.5</font></TD>
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