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<li class="navelem"><a class="el" href="namespaceOpenMS.html">OpenMS</a></li><li class="navelem"><a class="el" href="classOpenMS_1_1XMassFile.html">XMassFile</a></li>  </ul>
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<a href="#pub-methods">Public Member Functions</a> &#124;
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<div class="title">XMassFile Class Reference<div class="ingroups"><a class="el" href="group__FileIO.html">File IO</a></div></div>  </div>
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<p><a class="el" href="classOpenMS_1_1File.html" title="Basic file handling operations. ">File</a> adapter for 'XMass Analysis (fid)' files.  
 <a href="classOpenMS_1_1XMassFile.html#details">More...</a></p>

<p><code>#include &lt;<a class="el" href="XMassFile_8h_source.html">OpenMS/FORMAT/XMassFile.h</a>&gt;</code></p>
<div class="dynheader">
Inheritance diagram for XMassFile:</div>
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 <div class="center">
  <img src="classOpenMS_1_1XMassFile.png" usemap="#XMassFile_map" alt=""/>
  <map id="XMassFile_map" name="XMassFile_map">
<area href="classOpenMS_1_1ProgressLogger.html" title="Base class for all classes that want to report their progess. " alt="ProgressLogger" shape="rect" coords="0,0,103,24"/>
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<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:a5f9685179d5d1601d49d5b7497566bf5"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1XMassFile.html#a5f9685179d5d1601d49d5b7497566bf5">XMassFile</a> ()</td></tr>
<tr class="memdesc:a5f9685179d5d1601d49d5b7497566bf5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Default constructor.  <a href="#a5f9685179d5d1601d49d5b7497566bf5">More...</a><br/></td></tr>
<tr class="separator:a5f9685179d5d1601d49d5b7497566bf5"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aa8267d86bd2bfa7e8a2863f5b31c7240"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1XMassFile.html#aa8267d86bd2bfa7e8a2863f5b31c7240">~XMassFile</a> ()</td></tr>
<tr class="memdesc:aa8267d86bd2bfa7e8a2863f5b31c7240"><td class="mdescLeft">&#160;</td><td class="mdescRight">Destructor.  <a href="#aa8267d86bd2bfa7e8a2863f5b31c7240">More...</a><br/></td></tr>
<tr class="separator:aa8267d86bd2bfa7e8a2863f5b31c7240"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a865164e026ef00fa12377c1d63613613"><td class="memTemplParams" colspan="2">template&lt;class PeakType &gt; </td></tr>
<tr class="memitem:a865164e026ef00fa12377c1d63613613"><td class="memTemplItemLeft" align="right" valign="top">void&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1XMassFile.html#a865164e026ef00fa12377c1d63613613">load</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;filename, <a class="el" href="classOpenMS_1_1MSSpectrum.html">MSSpectrum</a>&lt; <a class="el" href="namespaceOpenMS.html#a013338b7bdbb5c3b4c78666656070e23">PeakType</a> &gt; &amp;spectrum)</td></tr>
<tr class="memdesc:a865164e026ef00fa12377c1d63613613"><td class="mdescLeft">&#160;</td><td class="mdescRight">Loads a spectrum from a XMass file.  <a href="#a865164e026ef00fa12377c1d63613613">More...</a><br/></td></tr>
<tr class="separator:a865164e026ef00fa12377c1d63613613"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a43556a513eaa5395c068a7c9874cc6d1"><td class="memTemplParams" colspan="2">template&lt;class PeakType &gt; </td></tr>
<tr class="memitem:a43556a513eaa5395c068a7c9874cc6d1"><td class="memTemplItemLeft" align="right" valign="top">void&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1XMassFile.html#a43556a513eaa5395c068a7c9874cc6d1">importExperimentalSettings</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;filename, <a class="el" href="classOpenMS_1_1MSExperiment.html">MSExperiment</a>&lt; <a class="el" href="namespaceOpenMS.html#a013338b7bdbb5c3b4c78666656070e23">PeakType</a> &gt; &amp;exp)</td></tr>
<tr class="memdesc:a43556a513eaa5395c068a7c9874cc6d1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Import settings from a XMass file.  <a href="#a43556a513eaa5395c068a7c9874cc6d1">More...</a><br/></td></tr>
<tr class="separator:a43556a513eaa5395c068a7c9874cc6d1"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a79101323d46a867becad4539db9446b5"><td class="memTemplParams" colspan="2">template&lt;typename SpectrumType &gt; </td></tr>
<tr class="memitem:a79101323d46a867becad4539db9446b5"><td class="memTemplItemLeft" align="right" valign="top">void&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1XMassFile.html#a79101323d46a867becad4539db9446b5">store</a> (const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;, const SpectrumType &amp;)</td></tr>
<tr class="memdesc:a79101323d46a867becad4539db9446b5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Stores a spectrum in a XMass file (not avaible)  <a href="#a79101323d46a867becad4539db9446b5">More...</a><br/></td></tr>
<tr class="separator:a79101323d46a867becad4539db9446b5"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pub_methods_classOpenMS_1_1ProgressLogger"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classOpenMS_1_1ProgressLogger')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classOpenMS_1_1ProgressLogger.html">ProgressLogger</a></td></tr>
<tr class="memitem:a2a106011aec95b2013d7a545f2063d01 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a2a106011aec95b2013d7a545f2063d01">ProgressLogger</a> ()</td></tr>
<tr class="memdesc:a2a106011aec95b2013d7a545f2063d01 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructor.  <a href="#a2a106011aec95b2013d7a545f2063d01">More...</a><br/></td></tr>
<tr class="separator:a2a106011aec95b2013d7a545f2063d01 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a19c882d907f90f7f88c7436d82cd2a13 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a19c882d907f90f7f88c7436d82cd2a13">~ProgressLogger</a> ()</td></tr>
<tr class="memdesc:a19c882d907f90f7f88c7436d82cd2a13 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="mdescLeft">&#160;</td><td class="mdescRight">Destructor.  <a href="#a19c882d907f90f7f88c7436d82cd2a13">More...</a><br/></td></tr>
<tr class="separator:a19c882d907f90f7f88c7436d82cd2a13 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:acc3538c5284777d8702ccaefeb61e74c inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#acc3538c5284777d8702ccaefeb61e74c">setLogType</a> (<a class="el" href="classOpenMS_1_1ProgressLogger.html#af67907baa897e9fb84df0cb89795b87c">LogType</a> type) const </td></tr>
<tr class="memdesc:acc3538c5284777d8702ccaefeb61e74c inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets the progress log that should be used. The default type is NONE!  <a href="#acc3538c5284777d8702ccaefeb61e74c">More...</a><br/></td></tr>
<tr class="separator:acc3538c5284777d8702ccaefeb61e74c inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a67024cdd5c34ec571baecabd8f783310 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1ProgressLogger.html#af67907baa897e9fb84df0cb89795b87c">LogType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a67024cdd5c34ec571baecabd8f783310">getLogType</a> () const </td></tr>
<tr class="memdesc:a67024cdd5c34ec571baecabd8f783310 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns the type of progress log being used.  <a href="#a67024cdd5c34ec571baecabd8f783310">More...</a><br/></td></tr>
<tr class="separator:a67024cdd5c34ec571baecabd8f783310 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:af1c45ecd71b5041b70319249e8e73591 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#af1c45ecd71b5041b70319249e8e73591">startProgress</a> (<a class="el" href="group__Concept.html#gae113cb41304c6692c7bf5d0624dc6f0f">SignedSize</a> begin, <a class="el" href="group__Concept.html#gae113cb41304c6692c7bf5d0624dc6f0f">SignedSize</a> end, const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;label) const </td></tr>
<tr class="memdesc:af1c45ecd71b5041b70319249e8e73591 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="mdescLeft">&#160;</td><td class="mdescRight">Initializes the progress display.  <a href="#af1c45ecd71b5041b70319249e8e73591">More...</a><br/></td></tr>
<tr class="separator:af1c45ecd71b5041b70319249e8e73591 inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a8852277abd03220cc7b80d6c1bed6fed inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a8852277abd03220cc7b80d6c1bed6fed">setProgress</a> (<a class="el" href="group__Concept.html#gae113cb41304c6692c7bf5d0624dc6f0f">SignedSize</a> value) const </td></tr>
<tr class="memdesc:a8852277abd03220cc7b80d6c1bed6fed inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets the current progress.  <a href="#a8852277abd03220cc7b80d6c1bed6fed">More...</a><br/></td></tr>
<tr class="separator:a8852277abd03220cc7b80d6c1bed6fed inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a1cc1012b0cdaea97f58d571af1ff45de inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a1cc1012b0cdaea97f58d571af1ff45de">endProgress</a> () const </td></tr>
<tr class="memdesc:a1cc1012b0cdaea97f58d571af1ff45de inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="mdescLeft">&#160;</td><td class="mdescRight">Ends the progress display.  <a href="#a1cc1012b0cdaea97f58d571af1ff45de">More...</a><br/></td></tr>
<tr class="separator:a1cc1012b0cdaea97f58d571af1ff45de inherit pub_methods_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="inherited"></a>
Additional Inherited Members</h2></td></tr>
<tr class="inherit_header pub_types_classOpenMS_1_1ProgressLogger"><td colspan="2" onclick="javascript:toggleInherit('pub_types_classOpenMS_1_1ProgressLogger')"><img src="closed.png" alt="-"/>&#160;Public Types inherited from <a class="el" href="classOpenMS_1_1ProgressLogger.html">ProgressLogger</a></td></tr>
<tr class="memitem:af67907baa897e9fb84df0cb89795b87c inherit pub_types_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">enum &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#af67907baa897e9fb84df0cb89795b87c">LogType</a> { <a class="el" href="classOpenMS_1_1ProgressLogger.html#af67907baa897e9fb84df0cb89795b87ca3ab34dd50405af2d5a62627d572f7860">CMD</a>, 
<a class="el" href="classOpenMS_1_1ProgressLogger.html#af67907baa897e9fb84df0cb89795b87ca73c6901c7c648a6a735770bc038bb26a">GUI</a>, 
<a class="el" href="classOpenMS_1_1ProgressLogger.html#af67907baa897e9fb84df0cb89795b87cac157bdf0b85a40d2619cbc8bc1ae5fe2">NONE</a>
 }</td></tr>
<tr class="memdesc:af67907baa897e9fb84df0cb89795b87c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Possible log types.  <a href="classOpenMS_1_1ProgressLogger.html#af67907baa897e9fb84df0cb89795b87c">More...</a><br/></td></tr>
<tr class="separator:af67907baa897e9fb84df0cb89795b87c inherit pub_types_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pro_attribs_classOpenMS_1_1ProgressLogger"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classOpenMS_1_1ProgressLogger')"><img src="closed.png" alt="-"/>&#160;Protected Attributes inherited from <a class="el" href="classOpenMS_1_1ProgressLogger.html">ProgressLogger</a></td></tr>
<tr class="memitem:a7c691d7de2a43bc5606e96cb15da3641 inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1ProgressLogger.html#af67907baa897e9fb84df0cb89795b87c">LogType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a7c691d7de2a43bc5606e96cb15da3641">type_</a></td></tr>
<tr class="separator:a7c691d7de2a43bc5606e96cb15da3641 inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a56589612e0e4164bf80c3918a087d05a inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gae113cb41304c6692c7bf5d0624dc6f0f">SignedSize</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a56589612e0e4164bf80c3918a087d05a">begin_</a></td></tr>
<tr class="separator:a56589612e0e4164bf80c3918a087d05a inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a0c749bf4e621699b7a5c45ae22c2fa90 inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gae113cb41304c6692c7bf5d0624dc6f0f">SignedSize</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a0c749bf4e621699b7a5c45ae22c2fa90">end_</a></td></tr>
<tr class="separator:a0c749bf4e621699b7a5c45ae22c2fa90 inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aec57b26e143202dc119a41592e075932 inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gae113cb41304c6692c7bf5d0624dc6f0f">SignedSize</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#aec57b26e143202dc119a41592e075932">value_</a></td></tr>
<tr class="separator:aec57b26e143202dc119a41592e075932 inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a76072b3919abcf01141ba68da8a001fd inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">QProgressDialog *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a76072b3919abcf01141ba68da8a001fd">dlg_</a></td></tr>
<tr class="separator:a76072b3919abcf01141ba68da8a001fd inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a6d9750520313ea7f843d7a49cb2e9e5f inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1StopWatch.html">StopWatch</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a6d9750520313ea7f843d7a49cb2e9e5f">stop_watch_</a></td></tr>
<tr class="separator:a6d9750520313ea7f843d7a49cb2e9e5f inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a79bacf60c4109d7517590441c7f85f9c inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">time_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a79bacf60c4109d7517590441c7f85f9c">last_invoke_</a></td></tr>
<tr class="separator:a79bacf60c4109d7517590441c7f85f9c inherit pro_attribs_classOpenMS_1_1ProgressLogger"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pro_static_attribs_classOpenMS_1_1ProgressLogger"><td colspan="2" onclick="javascript:toggleInherit('pro_static_attribs_classOpenMS_1_1ProgressLogger')"><img src="closed.png" alt="-"/>&#160;Static Protected Attributes inherited from <a class="el" href="classOpenMS_1_1ProgressLogger.html">ProgressLogger</a></td></tr>
<tr class="memitem:a94eb3ef5ef94b83eb348dd00a2b53119 inherit pro_static_attribs_classOpenMS_1_1ProgressLogger"><td class="memItemLeft" align="right" valign="top">static int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html#a94eb3ef5ef94b83eb348dd00a2b53119">recursion_depth_</a></td></tr>
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</table>
<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p><a class="el" href="classOpenMS_1_1File.html" title="Basic file handling operations. ">File</a> adapter for 'XMass Analysis (fid)' files. </p>
<p>XMass Analysis files is native format for Bruker spectrometer Flex Series.<br/>
 Each spectrum are saved in one directory. Each directory contains several files. We use 2 files for import in <a class="el" href="namespaceOpenMS.html" title="Main OpenMS namespace. ">OpenMS</a> :<br/>
 <b>acqus</b> : contains meta data about calibration (conversion for time to mz ratio), instrument specification and acquisition method.<br/>
 <b>fid</b> : contains intensity array. Intensity for each point are coded in 4 bytes integer.</p>
<dl class="section note"><dt>Note</dt><dd>MZ ratio are calculed with forumla based on article :<br/>
 <em>A database application for pre-processing, storage and comparison of mass spectra derived from patients and controls</em><br/>
 <b>Mark K Titulaer, Ivar Siccama, Lennard J Dekker, Angelique LCT van Rijswijk, Ron MA Heeren, Peter A Sillevis Smitt, and Theo M Luider</b><br/>
 BMC Bioinformatics. 2006; 7: 403<br/>
 <a href="http://www.pubmedcentral.nih.gov/picrender.fcgi?artid=1594579&blobtype=pdf">http://www.pubmedcentral.nih.gov/picrender.fcgi?artid=1594579&amp;blobtype=pdf</a><br/>
 </dd></dl>
</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
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          <td class="memname"><a class="el" href="classOpenMS_1_1XMassFile.html">XMassFile</a> </td>
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<p>Default constructor. </p>

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          <td class="memname">virtual ~<a class="el" href="classOpenMS_1_1XMassFile.html">XMassFile</a> </td>
          <td>(</td>
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<p>Destructor. </p>

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<h2 class="groupheader">Member Function Documentation</h2>
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          <td class="memname">void importExperimentalSettings </td>
          <td>(</td>
          <td class="paramtype">const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;&#160;</td>
          <td class="paramname"><em>filename</em>, </td>
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          <td class="paramtype"><a class="el" href="classOpenMS_1_1MSExperiment.html">MSExperiment</a>&lt; <a class="el" href="namespaceOpenMS.html#a013338b7bdbb5c3b4c78666656070e23">PeakType</a> &gt; &amp;&#160;</td>
          <td class="paramname"><em>exp</em>&#160;</td>
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<p>Import settings from a XMass file. </p>
<dl class="params"><dt>Parameters</dt><dd>
  <table class="params">
    <tr><td class="paramname">filename</td><td><a class="el" href="classOpenMS_1_1File.html" title="Basic file handling operations. ">File</a> from which the experimental settings should be loaded. </td></tr>
    <tr><td class="paramname">exp</td><td><a class="el" href="classOpenMS_1_1MSExperiment.html" title="Representation of a mass spectrometry experiment. ">MSExperiment</a> where the experimental settings will be stored.</td></tr>
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<dl class="exception"><dt>Exceptions</dt><dd>
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    <tr><td class="paramname"><a class="el" href="classOpenMS_1_1Exception_1_1FileNotFound.html" title="File not found exception. ">Exception::FileNotFound</a></td><td>is thrown if the file could not be opened. </td></tr>
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<p>References <a class="el" href="classOpenMS_1_1MassAnalyzer.html#a134230547dd6de10b20f6904d9422ec3a39869181b0414af3507c53e260851151">MassAnalyzer::ANALYZERNULL</a>, <a class="el" href="classOpenMS_1_1IonSource.html#a08b8f804d8602840858ce2d533db675fa1ea328a644e627283a35716a54108248">IonSource::DIRECT</a>, <a class="el" href="classOpenMS_1_1MSExperiment.html#a97a188fab675068e314d4058d9bb5c33">MSExperiment&lt; PeakT, ChromatogramPeakT &gt;::getExperimentalSettings()</a>, <a class="el" href="classOpenMS_1_1Instrument.html#a80c69c45fa9891b7de1229a3ff53f468">Instrument::getIonSources()</a>, <a class="el" href="classOpenMS_1_1Instrument.html#af3feca15695c5ad09a91b35d43559e57">Instrument::getMassAnalyzers()</a>, <a class="el" href="classOpenMS_1_1IonSource.html#a08b8f804d8602840858ce2d533db675fae8d599a14534ec7be2a6e24b599b91bd">IonSource::INLETNULL</a>, <a class="el" href="classOpenMS_1_1IonSource.html#aa1f350d16338b42e2384db2e5aa4a3f4af44dbf64796c3c09b804546061c39258">IonSource::MALDI</a>, <a class="el" href="classOpenMS_1_1IonSource.html#a84a045fa4024e050ca8be6d33311a054a62d66a51fa7574c652597716f7709865">IonSource::NEGATIVE</a>, <a class="el" href="classOpenMS_1_1IonSource.html#a84a045fa4024e050ca8be6d33311a054ae067ec7e2cc92a99865850c1fb96c5df">IonSource::POLNULL</a>, <a class="el" href="classOpenMS_1_1IonSource.html#a84a045fa4024e050ca8be6d33311a054a03d440bbbfb042afc85347f994b44fb5">IonSource::POSITIVE</a>, <a class="el" href="classOpenMS_1_1String.html#a3b68228d65702a6a614e8e4226d25b8d">String::prefix()</a>, <a class="el" href="classOpenMS_1_1DateTime.html#afb2353cf7399e53aa4b59ce122c6fc49">DateTime::set()</a>, <a class="el" href="classOpenMS_1_1Instrument.html#ab8f1a70c86c25fdc807045303471d72a">Instrument::setModel()</a>, <a class="el" href="classOpenMS_1_1Instrument.html#a77d37f2e1c12e8bd33ea0e660a89e927">Instrument::setName()</a>, <a class="el" href="classOpenMS_1_1Instrument.html#ad841317da64b0da46a6bea90696d3ec6">Instrument::setVendor()</a>, and <a class="el" href="classOpenMS_1_1MassAnalyzer.html#a134230547dd6de10b20f6904d9422ec3ac18e0fdb830eeb3a7f657a75000744db">MassAnalyzer::TOF</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1FileHandler.html#a408091416e0e1f6019abd59bdb6a9269">FileHandler::loadExperiment()</a>.</p>

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          <td class="paramtype">const <a class="el" href="classOpenMS_1_1String.html">String</a> &amp;&#160;</td>
          <td class="paramname"><em>filename</em>, </td>
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          <td class="paramtype"><a class="el" href="classOpenMS_1_1MSSpectrum.html">MSSpectrum</a>&lt; <a class="el" href="namespaceOpenMS.html#a013338b7bdbb5c3b4c78666656070e23">PeakType</a> &gt; &amp;&#160;</td>
          <td class="paramname"><em>spectrum</em>&#160;</td>
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<p>Loads a spectrum from a XMass file. </p>
<dl class="params"><dt>Parameters</dt><dd>
  <table class="params">
    <tr><td class="paramname">filename</td><td>Name of the XMass file which should be loaded. </td></tr>
    <tr><td class="paramname">spectrum</td><td>Spectrum in which the data loaded from the file should be stored.</td></tr>
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<dl class="exception"><dt>Exceptions</dt><dd>
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    <tr><td class="paramname"><a class="el" href="classOpenMS_1_1Exception_1_1FileNotFound.html" title="File not found exception. ">Exception::FileNotFound</a></td><td>is thrown if the file could not be read </td></tr>
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<p>References <a class="el" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9aec300465e654790d9154eb0d64ca3267">DataProcessing::BASELINE_REDUCTION</a>, <a class="el" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9a03940d78fb7ee5fc71b49ca87cfdfb1c">DataProcessing::CALIBRATION</a>, <a class="el" href="classOpenMS_1_1MSSpectrum.html#af072fc84225ae927f7527f208ea86cbd">MSSpectrum&lt; PeakT &gt;::clear()</a>, <a class="el" href="classOpenMS_1_1String.html#ae1870a969417d19a33f225046a66a58d">String::hasPrefix()</a>, <a class="el" href="classOpenMS_1_1String.html#a7b27eb434fa37a2a0ad4295d483a591b">String::hasSuffix()</a>, <a class="el" href="classOpenMS_1_1InstrumentSettings.html#af9e3bb003dab9b2cf00854a1eb3b01f0a16e91cdeda492f0745dc99784570f080">InstrumentSettings::MASSSPECTRUM</a>, <a class="el" href="classOpenMS_1_1IonSource.html#a84a045fa4024e050ca8be6d33311a054a62d66a51fa7574c652597716f7709865">IonSource::NEGATIVE</a>, <a class="el" href="classOpenMS_1_1DateTime.html#a27fa24aa34288a3934c3d5a936463973">DateTime::now()</a>, <a class="el" href="classOpenMS_1_1IonSource.html#a84a045fa4024e050ca8be6d33311a054ae067ec7e2cc92a99865850c1fb96c5df">IonSource::POLNULL</a>, <a class="el" href="classOpenMS_1_1IonSource.html#a84a045fa4024e050ca8be6d33311a054a03d440bbbfb042afc85347f994b44fb5">IonSource::POSITIVE</a>, <a class="el" href="classOpenMS_1_1String.html#a3b68228d65702a6a614e8e4226d25b8d">String::prefix()</a>, <a class="el" href="classOpenMS_1_1SpectrumSettings.html#ab7b974cef152e339967fce62f49de0d9ac4247d1d6a6d7690023932e58b441533">SpectrumSettings::RAWDATA</a>, <a class="el" href="classOpenMS_1_1SpectrumSettings.html#ae173bdf1ee2cf333fded899217fda962">SpectrumSettings::setAcquisitionInfo()</a>, <a class="el" href="classOpenMS_1_1SpectrumSettings.html#a2116f9b1dde8ba3aef4a07e6f2a970a7">SpectrumSettings::setComment()</a>, <a class="el" href="classOpenMS_1_1DataProcessing.html#a1429c5f03fd5bf24ca23b2666cd30422">DataProcessing::setCompletionTime()</a>, <a class="el" href="classOpenMS_1_1SpectrumSettings.html#a7694e9703fec55eec39614bd9ee25e8c">SpectrumSettings::setDataProcessing()</a>, <a class="el" href="classOpenMS_1_1SourceFile.html#abd1ddea1c593433ad2c04c560a5e94e6">SourceFile::setFileSize()</a>, <a class="el" href="classOpenMS_1_1SourceFile.html#a2d47bfad02d5ce05dcfab38bc1b21400">SourceFile::setFileType()</a>, <a class="el" href="classOpenMS_1_1SpectrumSettings.html#a4d6f80bde5859c412b221b0fc51114ba">SpectrumSettings::setInstrumentSettings()</a>, <a class="el" href="classOpenMS_1_1Peak2D.html#ab875c2479c6cd2a0189e4684bfa4f97d">Peak2D::setIntensity()</a>, <a class="el" href="classOpenMS_1_1MetaInfoInterface.html#a135a7e818125b31198a8a65d9ac7a3d1">MetaInfoInterface::setMetaValue()</a>, <a class="el" href="classOpenMS_1_1AcquisitionInfo.html#a2ba2b43016c198589d743be93ff19072">AcquisitionInfo::setMethodOfCombination()</a>, <a class="el" href="classOpenMS_1_1MSSpectrum.html#a24f081fe74bbbf773533ad19e96d8358">MSSpectrum&lt; PeakT &gt;::setMSLevel()</a>, <a class="el" href="classOpenMS_1_1Software.html#a77d37f2e1c12e8bd33ea0e660a89e927">Software::setName()</a>, <a class="el" href="classOpenMS_1_1MSSpectrum.html#a77d37f2e1c12e8bd33ea0e660a89e927">MSSpectrum&lt; PeakT &gt;::setName()</a>, <a class="el" href="classOpenMS_1_1SourceFile.html#af0a7eddbacf20c4f4045b671df6b0fe7">SourceFile::setNameOfFile()</a>, <a class="el" href="classOpenMS_1_1SpectrumSettings.html#afa370200c7cf12d530364dec51830515">SpectrumSettings::setNativeID()</a>, <a class="el" href="classOpenMS_1_1SourceFile.html#a2edd9a092842480801a9738a3a514fb3">SourceFile::setPathToFile()</a>, <a class="el" href="classOpenMS_1_1InstrumentSettings.html#a205c68b92698410dc6142632417ae0c8">InstrumentSettings::setPolarity()</a>, <a class="el" href="classOpenMS_1_1Peak2D.html#abbdecccbbcf763c6c5eae3b7c3cb915e">Peak2D::setPosition()</a>, <a class="el" href="classOpenMS_1_1DataProcessing.html#ace28c93a6e52cfa962de6e5f4bad1fc8">DataProcessing::setProcessingActions()</a>, <a class="el" href="classOpenMS_1_1MSSpectrum.html#aac8c50f318154e9e5b7b01aee806e17f">MSSpectrum&lt; PeakT &gt;::setRT()</a>, <a class="el" href="classOpenMS_1_1InstrumentSettings.html#ae5412841952d50bcec24df4868e86e67">InstrumentSettings::setScanMode()</a>, <a class="el" href="classOpenMS_1_1DataProcessing.html#a8ff34073a7ed3fabe3f5deff96c0282e">DataProcessing::setSoftware()</a>, <a class="el" href="classOpenMS_1_1SpectrumSettings.html#a8c115a86d9d95ea2b664bd4ba4a45af4">SpectrumSettings::setSourceFile()</a>, <a class="el" href="classOpenMS_1_1SpectrumSettings.html#a7fd9d42016cc77134a5a518fc0478add">SpectrumSettings::setType()</a>, <a class="el" href="classOpenMS_1_1Software.html#af9810188aa685015e084d147d439aa8a">Software::setVersion()</a>, <a class="el" href="classOpenMS_1_1InstrumentSettings.html#a71de61b67afb629b55d610f58bebb554">InstrumentSettings::setZoomScan()</a>, <a class="el" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9ad261194a1dded675599dfdc7212b63b1">DataProcessing::SMOOTHING</a>, and <a class="el" href="classOpenMS_1_1String.html#a305141aabee4495bc55a45971af1f05e">String::suffix()</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1FileHandler.html#a408091416e0e1f6019abd59bdb6a9269">FileHandler::loadExperiment()</a>.</p>

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          <td class="paramname">, </td>
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<p>Stores a spectrum in a XMass file (not avaible) </p>
<dl class="exception"><dt>Exceptions</dt><dd>
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    <tr><td class="paramname"><a class="el" href="classOpenMS_1_1Exception_1_1FileNotWritable.html" title="File not writable exception. ">Exception::FileNotWritable</a></td><td>is thrown </td></tr>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:31 using doxygen 1.8.5</font></TD>
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