1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
1001
1002
1003
1004
1005
1006
1007
1008
1009
1010
1011
1012
1013
1014
1015
1016
1017
1018
1019
1020
1021
1022
1023
1024
1025
1026
1027
1028
1029
1030
1031
1032
1033
1034
1035
1036
1037
1038
1039
1040
1041
1042
1043
1044
1045
1046
1047
1048
1049
1050
1051
1052
1053
1054
1055
1056
1057
1058
1059
1060
1061
1062
1063
1064
1065
1066
1067
1068
1069
1070
1071
1072
1073
1074
1075
1076
1077
1078
1079
1080
1081
1082
1083
1084
1085
1086
1087
1088
1089
1090
1091
1092
1093
1094
1095
1096
1097
1098
1099
1100
1101
1102
1103
1104
1105
1106
1107
1108
1109
1110
1111
1112
1113
1114
1115
1116
1117
1118
1119
1120
1121
1122
1123
1124
1125
1126
1127
1128
1129
1130
1131
1132
1133
1134
1135
1136
1137
1138
1139
1140
1141
1142
1143
1144
1145
1146
1147
1148
1149
1150
1151
1152
1153
1154
1155
1156
1157
1158
1159
1160
1161
1162
1163
1164
1165
1166
1167
1168
1169
1170
1171
1172
1173
1174
1175
1176
1177
1178
1179
1180
1181
1182
1183
1184
1185
1186
1187
1188
1189
1190
1191
1192
1193
1194
1195
1196
1197
1198
1199
1200
1201
1202
1203
1204
1205
1206
1207
1208
1209
1210
1211
1212
1213
1214
1215
1216
1217
1218
1219
1220
1221
1222
1223
1224
1225
1226
1227
1228
1229
1230
1231
1232
1233
1234
1235
1236
1237
1238
1239
1240
1241
1242
1243
1244
1245
1246
1247
1248
1249
1250
1251
1252
1253
1254
1255
1256
1257
1258
1259
1260
1261
1262
1263
1264
1265
1266
1267
1268
1269
1270
1271
1272
1273
1274
1275
1276
1277
1278
1279
1280
1281
1282
1283
1284
1285
1286
1287
1288
1289
1290
1291
1292
1293
1294
1295
1296
1297
1298
1299
1300
1301
1302
1303
1304
1305
1306
1307
1308
1309
1310
1311
1312
1313
1314
1315
1316
1317
1318
1319
1320
1321
1322
1323
1324
1325
1326
1327
1328
1329
1330
1331
1332
1333
1334
1335
1336
1337
1338
1339
1340
1341
1342
1343
1344
1345
1346
1347
1348
1349
1350
1351
1352
1353
1354
1355
1356
1357
1358
1359
1360
1361
1362
1363
1364
1365
1366
1367
1368
1369
1370
1371
1372
1373
1374
1375
1376
1377
1378
1379
1380
1381
1382
1383
1384
1385
1386
1387
1388
1389
1390
1391
1392
1393
1394
1395
1396
1397
1398
1399
1400
1401
1402
1403
1404
1405
1406
1407
1408
1409
1410
1411
1412
1413
1414
1415
1416
1417
1418
1419
1420
1421
1422
1423
1424
1425
1426
1427
1428
1429
1430
1431
1432
1433
1434
1435
1436
1437
1438
1439
1440
1441
1442
1443
1444
1445
1446
1447
1448
1449
1450
1451
1452
1453
1454
1455
1456
1457
1458
1459
1460
1461
1462
1463
1464
1465
1466
1467
1468
1469
1470
1471
1472
1473
1474
1475
1476
1477
1478
1479
1480
1481
1482
1483
1484
1485
1486
1487
1488
1489
1490
1491
1492
1493
1494
1495
1496
1497
1498
1499
1500
1501
1502
1503
1504
1505
1506
1507
1508
1509
1510
1511
1512
1513
1514
1515
1516
1517
1518
1519
1520
1521
1522
1523
1524
1525
1526
1527
1528
1529
1530
1531
1532
1533
1534
1535
1536
1537
1538
1539
1540
1541
1542
1543
1544
1545
1546
1547
1548
1549
1550
1551
1552
1553
1554
1555
1556
1557
1558
1559
1560
1561
1562
1563
|
<HTML>
<HEAD>
<TITLE>Class Members</TITLE>
<LINK HREF="doxygen.css" REL="stylesheet" TYPE="text/css">
<LINK HREF="style_ini.css" REL="stylesheet" TYPE="text/css">
</HEAD>
<BODY BGCOLOR="#FFFFFF">
<A href="index.html">Home</A> ·
<A href="classes.html">Classes</A> ·
<A href="annotated.html">Annotated Classes</A> ·
<A href="modules.html">Modules</A> ·
<A href="functions_func.html">Members</A> ·
<A href="namespaces.html">Namespaces</A> ·
<A href="pages.html">Related Pages</A>
<HR style="height:1px; border:none; border-top:1px solid #c0c0c0;">
<!-- Generated by Doxygen 1.8.5 -->
</div><!-- top -->
<div class="contents">
<div class="textblock">Here is a list of all class members with links to the classes they belong to:</div>
<h3><a class="anchor" id="index_a"></a>- a -</h3><ul>
<li>A
: <a class="el" href="structOpenMS_1_1Math_1_1GaussFitter_1_1GaussFitResult.html#a2941385b1be5280d3b1f546356f7ec99">GaussFitter::GaussFitResult</a>
</li>
<li>a
: <a class="el" href="structOpenMS_1_1Math_1_1GumbelDistributionFitter_1_1GumbelDistributionFitResult.html#a1031d0e0a97a340abfe0a6ab9e831045">GumbelDistributionFitter::GumbelDistributionFitResult</a>
</li>
<li>A_
: <a class="el" href="classOpenMS_1_1EGHModel.html#a391f2a2ead4e6bffdaae7daadd4622da">EGHModel</a>
</li>
<li>a_
: <a class="el" href="classOpenMS_1_1TOFCalibration.html#aea166822edd6a1a405ceda96ef9e908c">TOFCalibration</a>
</li>
<li>A_
: <a class="el" href="classOpenMS_1_1LocalLinearMap.html#a18092568340f5be7e5023be1ca2890d5">LocalLinearMap</a>
</li>
<li>a_ion_losses_cd_
: <a class="el" href="classOpenMS_1_1PILISModel.html#a247bed7e8d513ca9228adce009745876">PILISModel</a>
</li>
<li>a_ion_losses_cr_
: <a class="el" href="classOpenMS_1_1PILISModel.html#ab8b6f3019439fd05b05c28955656cf18">PILISModel</a>
</li>
<li>AA
: <a class="el" href="classOpenMS_1_1Modification.html#a60e47d0643ba030a4c13c4b3e7788d7fadf8e3bb19d1b4de18399b64a58a39590">Modification</a>
, <a class="el" href="classOpenMS_1_1MS2Info.html#aad15ccc0442859084ee8b088dd93f40f">MS2Info</a>
</li>
<li>aa_after_
: <a class="el" href="classOpenMS_1_1PeptideHit.html#a3d2bbaa1d9932cde3b29f0e6efa54558">PeptideHit</a>
</li>
<li>AA_AT_CTERM
: <a class="el" href="classOpenMS_1_1Modification.html#a60e47d0643ba030a4c13c4b3e7788d7faaf5309a6b44d50c2108ebeb56ff66924">Modification</a>
</li>
<li>AA_AT_NTERM
: <a class="el" href="classOpenMS_1_1Modification.html#a60e47d0643ba030a4c13c4b3e7788d7fa36c755c9d424687a052d8d52f98f9492">Modification</a>
</li>
<li>aa_before_
: <a class="el" href="classOpenMS_1_1PeptideHit.html#a3b718d712519cba95bb601eda80f9d40">PeptideHit</a>
</li>
<li>AA_SUBSTITUTION
: <a class="el" href="classOpenMS_1_1ResidueModification.html#a2625255b968a6706fbd74639f92551beaaf37c1b8ca5113afa13201824df6b415">ResidueModification</a>
</li>
<li>aa_to_index_
: <a class="el" href="classOpenMS_1_1SvmTheoreticalSpectrumGenerator.html#a6488f3ef2246dcc142791a66eab4bf7a">SvmTheoreticalSpectrumGenerator</a>
</li>
<li>aa_to_weight_
: <a class="el" href="classOpenMS_1_1CompNovoIdentificationBase.html#aa8c6a0786e4331831d8e6f3729594207">CompNovoIdentificationBase</a>
</li>
<li>aa_weight_
: <a class="el" href="classOpenMS_1_1PILISIdentification.html#a7fb953cf5cc703d61c19c4ffb23ddbe4">PILISIdentification</a>
</li>
<li>AAIndex()
: <a class="el" href="classOpenMS_1_1AAIndex.html#ab4812f4a3a40ad323db68b25b5b1ddcd">AAIndex</a>
</li>
<li>aamass_
: <a class="el" href="classOpenMS_1_1GoodDiffFilter.html#ab27421a00d8ac1c3f8f0065fe9e68e7a">GoodDiffFilter</a>
</li>
<li>AAname
: <a class="el" href="structOpenMS_1_1EnzymaticDigestion_1_1BindingSite.html#a7285a917de5ae0edee000678085cdd76">EnzymaticDigestion::BindingSite</a>
</li>
<li>AASequence()
: <a class="el" href="classOpenMS_1_1AASequence.html#addfd0e7570d9812de0333d90591b9967">AASequence</a>
</li>
<li>AASequence::ConstIterator
: <a class="el" href="classOpenMS_1_1AASequence_1_1Iterator.html#a0f64c3639825c13614f4ebc8ef782ab8">AASequence::Iterator</a>
</li>
<li>AASequenceIdentity()
: <a class="el" href="classOpenMS_1_1MRMDecoy.html#a3e49895127ad86bc7be44dd58189cada">MRMDecoy</a>
</li>
<li>abort_()
: <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a5eeb26578a9f2313c4fff108fb2d9d7b">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a>
</li>
<li>abort_reasons_
: <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a290ced0989c9db9d895a6a3435360f47">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a>
</li>
<li>abortPipeline()
: <a class="el" href="classOpenMS_1_1TOPPASBase.html#ae6d95c909402024df0f7a78d69a7c424">TOPPASBase</a>
, <a class="el" href="classOpenMS_1_1TOPPASScene.html#ae6d95c909402024df0f7a78d69a7c424">TOPPASScene</a>
</li>
<li>aborts_
: <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#afebc8acd9f3b44ba2936d842469f47e4">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a>
</li>
<li>abortTOPPTool()
: <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a8c5abe9a7d1bbb57d8b7a6bd70b175d7">TOPPViewBase</a>
</li>
<li>aboutToBeDestroyed()
: <a class="el" href="classOpenMS_1_1SpectrumWidget.html#ade35877ecc18e393ae2ec1332e36e84f">SpectrumWidget</a>
, <a class="el" href="classOpenMS_1_1TOPPASWidget.html#a551953b76b76e3b12e7f65515b2bff69">TOPPASWidget</a>
</li>
<li>aboutToCloseId()
: <a class="el" href="classOpenMS_1_1EnhancedTabBar.html#ad4196c5b4eaa7e6ee70e211d4c31ce1b">EnhancedTabBar</a>
, <a class="el" href="classOpenMS_1_1TOPPASTabBar.html#ad4196c5b4eaa7e6ee70e211d4c31ce1b">TOPPASTabBar</a>
</li>
<li>abs_error_
: <a class="el" href="classOpenMS_1_1LevMarqFitter1D.html#ad3b783bac8060a71744f66dc9074138a">LevMarqFitter1D</a>
</li>
<li>abs_prec_error
: <a class="el" href="structRNPxlReportRow.html#a39255cb277d0fb0be0556278dc87446d">RNPxlReportRow</a>
</li>
<li>absdiff_max_
: <a class="el" href="classOpenMS_1_1FuzzyStringComparator.html#a99a051e1bb48ce428c66376fa6b911fe">FuzzyStringComparator</a>
</li>
<li>absdiff_max_allowed_
: <a class="el" href="classOpenMS_1_1FuzzyStringComparator.html#a8ebe646551b020194cb0ecf657e3ff79">FuzzyStringComparator</a>
</li>
<li>absolutePath()
: <a class="el" href="classOpenMS_1_1File.html#a61899cbc4ac6a887a6e61e14e5e45685">File</a>
</li>
<li>ABSORBTION
: <a class="el" href="classOpenMS_1_1InstrumentSettings.html#af9e3bb003dab9b2cf00854a1eb3b01f0ac1923f59816bf846e2a62d41cfb91b2f">InstrumentSettings</a>
</li>
<li>ABSORPTION_CHROMATOGRAM
: <a class="el" href="classOpenMS_1_1ChromatogramSettings.html#a68c34f5f5adf5049a53084716add11bda1a3d139c1d36a9c7462f3e1e8bbba110">ChromatogramSettings</a>
</li>
<li>abundance
: <a class="el" href="structOpenMS_1_1ims_1_1IMSIsotopeDistribution_1_1Peak.html#abd8149c466c05720467b9fad1bf0b55c">IMSIsotopeDistribution::Peak</a>
</li>
<li>abundance_type
: <a class="el" href="classOpenMS_1_1ims_1_1IMSIsotopeDistribution.html#a5350157293e03a3f5838c62555b2a03d">IMSIsotopeDistribution</a>
</li>
<li>abundances
: <a class="el" href="structOpenMS_1_1PeptideAndProteinQuant_1_1PeptideData.html#acfd3381d755aea18f59399348ca86809">PeptideAndProteinQuant::PeptideData</a>
, <a class="el" href="structOpenMS_1_1PeptideAndProteinQuant_1_1ProteinData.html#a4af368efa85924b7a2b6c7656333a830">PeptideAndProteinQuant::ProteinData</a>
</li>
<li>abundances_container
: <a class="el" href="classOpenMS_1_1ims_1_1IMSIsotopeDistribution.html#a6127ddf604a3b6725378887fa2f03abc">IMSIsotopeDistribution</a>
</li>
<li>abundances_iterator
: <a class="el" href="classOpenMS_1_1ims_1_1IMSIsotopeDistribution.html#ab0b8bc9fe7c407dc8f592745bf7b7f9d">IMSIsotopeDistribution</a>
</li>
<li>ABUNDANCES_SUM_ERROR
: <a class="el" href="classOpenMS_1_1ims_1_1IMSIsotopeDistribution.html#addb7baa719fd0a3a36c685913df4ba2c">IMSIsotopeDistribution</a>
</li>
<li>AC
: <a class="el" href="classOpenMS_1_1MS2Info.html#ad7e7c0e1723c5bd8039efa5a427c1df2">MS2Info</a>
</li>
<li>ac_mode_
: <a class="el" href="classOpenMS_1_1IonDetectorVisualizer.html#a8ff372ce0a60c159b3ffa6946d88c25f">IonDetectorVisualizer</a>
</li>
<li>acc_
: <a class="el" href="classOpenMS_1_1TransformationModelInterpolated.html#a413a5250121cb0862f2b50c631638b53">TransformationModelInterpolated</a>
, <a class="el" href="classOpenMS_1_1TOFCalibration.html#a413a5250121cb0862f2b50c631638b53">TOFCalibration</a>
, <a class="el" href="classOpenMS_1_1MassAnalyzerVisualizer.html#a27791ecb5ab40b279b22d3bf3ece320d">MassAnalyzerVisualizer</a>
</li>
<li>accession
: <a class="el" href="structOpenMS_1_1MzTabProteinSectionRow.html#a736271d52fc98f32f69a9d8391275e1e">MzTabProteinSectionRow</a>
, <a class="el" href="structOpenMS_1_1MzTabPeptideSectionRow.html#a736271d52fc98f32f69a9d8391275e1e">MzTabPeptideSectionRow</a>
, <a class="el" href="structOpenMS_1_1Internal_1_1SemanticValidator_1_1CVTerm.html#aa4b705e9e4267f64630cacd7fc55fc5d">SemanticValidator::CVTerm</a>
, <a class="el" href="structOpenMS_1_1CVTerm_1_1Unit.html#aa4b705e9e4267f64630cacd7fc55fc5d">CVTerm::Unit</a>
</li>
<li>accession_
: <a class="el" href="classOpenMS_1_1CVMappingTerm.html#aa617b4aa2077968f6271d4cf6aca883e">CVMappingTerm</a>
, <a class="el" href="classOpenMS_1_1MzTabParameter.html#aa617b4aa2077968f6271d4cf6aca883e">MzTabParameter</a>
, <a class="el" href="classOpenMS_1_1CVTerm.html#aa617b4aa2077968f6271d4cf6aca883e">CVTerm</a>
, <a class="el" href="classOpenMS_1_1ProteinHit.html#aa617b4aa2077968f6271d4cf6aca883e">ProteinHit</a>
</li>
<li>accession_att_
: <a class="el" href="classOpenMS_1_1Internal_1_1SemanticValidator.html#aff629f3fbb7f6af52d59caed68ae5450">SemanticValidator</a>
</li>
<li>accession_to_id_
: <a class="el" href="classOpenMS_1_1ConsensusXMLFile.html#a15e5e3bc144b437972738bf1d168b741">ConsensusXMLFile</a>
, <a class="el" href="classOpenMS_1_1FeatureXMLFile.html#a15e5e3bc144b437972738bf1d168b741">FeatureXMLFile</a>
</li>
<li>accessions
: <a class="el" href="structOpenMS_1_1PeptideAndProteinQuant_1_1PeptideData.html#a532b76a601a2c4089468ea5c8f4edd22">PeptideAndProteinQuant::PeptideData</a>
, <a class="el" href="structOpenMS_1_1ProteinIdentification_1_1ProteinGroup.html#a4920100bceeb1d49378a5d4370bba984">ProteinIdentification::ProteinGroup</a>
, <a class="el" href="structRNPxlReportRow.html#afa94a0caa379ed67b6c57f75822e05cc">RNPxlReportRow</a>
</li>
<li>accessions_
: <a class="el" href="classOpenMS_1_1PSProteinInference.html#a8280b9abe91947803b2cc97843dfa528">PSProteinInference</a>
</li>
<li>accuracy_
: <a class="el" href="classOpenMS_1_1MassAnalyzer.html#aaea47dca7ed914dfbbc8df1da3a7f7dc">MassAnalyzer</a>
</li>
<li>AccurateMassSearchEngine()
: <a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#a2827ea0b8c802e5334b5fe7d25524d5b">AccurateMassSearchEngine</a>
</li>
<li>AccurateMassSearchResult()
: <a class="el" href="classOpenMS_1_1AccurateMassSearchResult.html#a4ea3e16c5488f402fbb98c06b800990f">AccurateMassSearchResult</a>
</li>
<li>acidic()
: <a class="el" href="classOpenMS_1_1AAIndex.html#a9dfe721ea8c23f1ab211ac5d802615aa">AAIndex</a>
</li>
<li>ACQMODENULL
: <a class="el" href="classOpenMS_1_1IonDetector.html#ab0301b5c82d74538dfffc98406254e11a1604af599ee4de8086c7be4ebb386371">IonDetector</a>
</li>
<li>Acquisition()
: <a class="el" href="classOpenMS_1_1Acquisition.html#a0057d19707aa1807e34396536beedeab">Acquisition</a>
</li>
<li>acquisition_info_
: <a class="el" href="classOpenMS_1_1ChromatogramSettings.html#a15f7ad037730eef379e7e6327f35b7c6">ChromatogramSettings</a>
, <a class="el" href="classOpenMS_1_1SpectrumSettings.html#a15f7ad037730eef379e7e6327f35b7c6">SpectrumSettings</a>
</li>
<li>acquisition_mode_
: <a class="el" href="classOpenMS_1_1IonDetector.html#ac66e33d4c4fca5556e62cf1c7b7d45be">IonDetector</a>
</li>
<li>AcquisitionInfo()
: <a class="el" href="classOpenMS_1_1AcquisitionInfo.html#a48f5b5b428d09ca5e82469fd7a03e1c1">AcquisitionInfo</a>
</li>
<li>acquisitioninfo_method_
: <a class="el" href="classOpenMS_1_1AcquisitionInfoVisualizer.html#afd26f87e063a9d7732ee071522fb0e41">AcquisitionInfoVisualizer</a>
</li>
<li>AcquisitionInfoVisualizer()
: <a class="el" href="classOpenMS_1_1AcquisitionInfoVisualizer.html#a3bcea51e681d6220439d747bf51fcb0d">AcquisitionInfoVisualizer</a>
</li>
<li>AcquisitionMode
: <a class="el" href="classOpenMS_1_1IonDetector.html#ab0301b5c82d74538dfffc98406254e11">IonDetector</a>
</li>
<li>acquisitionnumber_
: <a class="el" href="classOpenMS_1_1AcquisitionVisualizer.html#a78cb617287f9b6c619f77910e28d4511">AcquisitionVisualizer</a>
</li>
<li>AcquisitionVisualizer()
: <a class="el" href="classOpenMS_1_1AcquisitionVisualizer.html#ac24b2ba8bd1ab40ad145ba5efb002397">AcquisitionVisualizer</a>
</li>
<li>AcqusHandler()
: <a class="el" href="classOpenMS_1_1Internal_1_1AcqusHandler.html#a14f34f4dc486b65f294cc6f909496179">AcqusHandler</a>
</li>
<li>act_cons_element_
: <a class="el" href="classOpenMS_1_1ConsensusXMLFile.html#a65b28df44922cbdc28bcc48bf71afc66">ConsensusXMLFile</a>
</li>
<li>action_mode_
: <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#ad3b21d64de23aab5bddae397244844bb">SpectrumCanvas</a>
, <a class="el" href="classOpenMS_1_1TOPPASScene.html#a5c5b85867e6d864f05dc38509ee94550">TOPPASScene</a>
</li>
<li>ActionMode
: <a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a6cc566e3bbfdcb8a5a9d85941238cef5">XMLHandler</a>
, <a class="el" href="classOpenMS_1_1TOPPASScene.html#a6cc566e3bbfdcb8a5a9d85941238cef5">TOPPASScene</a>
</li>
<li>actionModeChange()
: <a class="el" href="classOpenMS_1_1Spectrum3DOpenGLCanvas.html#a50f15e863de74778ad95e0a9ef500a24">Spectrum3DOpenGLCanvas</a>
, <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#a50f15e863de74778ad95e0a9ef500a24">SpectrumCanvas</a>
</li>
<li>ActionModes
: <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#abab424024a80824f65cbb8fcf68473ce">SpectrumCanvas</a>
</li>
<li>actions_
: <a class="el" href="classOpenMS_1_1DataProcessingVisualizer.html#aeef8d04b704178b52df6218e635735bc">DataProcessingVisualizer</a>
</li>
<li>activate1DSpectrum()
: <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a73c060470c58fceb0d4cca274832d153">TOPPViewBase</a>
, <a class="el" href="classOpenMS_1_1TOPPViewBehaviorInterface.html#a45c6956a747532e2ce992e6fcabfae6e">TOPPViewBehaviorInterface</a>
, <a class="el" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a550461e8df23adc47814657d14fa7e4c">TOPPViewIdentificationViewBehavior</a>
, <a class="el" href="classOpenMS_1_1TOPPViewSpectraViewBehavior.html#a550461e8df23adc47814657d14fa7e4c">TOPPViewSpectraViewBehavior</a>
</li>
<li>activateAsPrecursorPeak()
: <a class="el" href="classOpenMS_1_1MSPeak.html#a98ddf1a8450f074b2f413aa6c494ebd0">MSPeak</a>
</li>
<li>activateBehavior()
: <a class="el" href="classOpenMS_1_1TOPPViewBehaviorInterface.html#ab67dd8f6035206616d85476a595bd880">TOPPViewBehaviorInterface</a>
, <a class="el" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a8d1a9183b4f49dfa1afa2879836a40d3">TOPPViewIdentificationViewBehavior</a>
, <a class="el" href="classOpenMS_1_1TOPPViewSpectraViewBehavior.html#a8d1a9183b4f49dfa1afa2879836a40d3">TOPPViewSpectraViewBehavior</a>
</li>
<li>activateLayer()
: <a class="el" href="classOpenMS_1_1Spectrum1DCanvas.html#a6b84f609b0376f7f10554000daffa056">Spectrum1DCanvas</a>
, <a class="el" href="classOpenMS_1_1Spectrum2DCanvas.html#a6b84f609b0376f7f10554000daffa056">Spectrum2DCanvas</a>
, <a class="el" href="classOpenMS_1_1Spectrum3DCanvas.html#a6b84f609b0376f7f10554000daffa056">Spectrum3DCanvas</a>
, <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#a419822ac2d533f6370f7ed2081214b09">SpectrumCanvas</a>
</li>
<li>activatePrecalculationMode()
: <a class="el" href="classOpenMS_1_1MultiGradient.html#a0f0164392fc140b4e1c72a70647ec611">MultiGradient</a>
</li>
<li>activateSpectrum()
: <a class="el" href="classOpenMS_1_1Spectrum1DCanvas.html#a69f84ce63d554c23a60e26a924c9513e">Spectrum1DCanvas</a>
</li>
<li>activation_energy_
: <a class="el" href="classOpenMS_1_1Precursor.html#aa6f34568507a0e94bf00870c2d21b550">Precursor</a>
, <a class="el" href="classOpenMS_1_1PrecursorVisualizer.html#a52111227bcfd9a240f63a4e7fc95ddbc">PrecursorVisualizer</a>
</li>
<li>activation_methods_
: <a class="el" href="classOpenMS_1_1Precursor.html#ab659095a44452aa65bce67eaa0f698bc">Precursor</a>
, <a class="el" href="classOpenMS_1_1PrecursorVisualizer.html#ae12367296b9f6fe261e6f02a98730807">PrecursorVisualizer</a>
</li>
<li>ActivationMethod
: <a class="el" href="classOpenMS_1_1Precursor.html#ade504dd839d796a10e9fc4d840952dc1">Precursor</a>
</li>
<li>active
: <a class="el" href="structOpenMS_1_1ItraqConstants_1_1ChannelInfo.html#a03c996f9fcf0e10baeb3e700be0c409a">ItraqConstants::ChannelInfo</a>
</li>
<li>activeLayerIndex()
: <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#a62669b2b00f9f944d63734579c2aab10">SpectrumCanvas</a>
</li>
<li>activeWindow_()
: <a class="el" href="classOpenMS_1_1TOPPASBase.html#afd455e46d2145ebb46704df56311c330">TOPPASBase</a>
</li>
<li>actual_aa_sequences_
: <a class="el" href="classOpenMS_1_1PepXMLFileMascot.html#af29825acb809749a85cf3ad3f9929026">PepXMLFileMascot</a>
</li>
<li>actual_charge_
: <a class="el" href="classOpenMS_1_1XTandemXMLFile.html#a92593c88b5f8c4d9ac7dc16ad6a0c4e5">XTandemXMLFile</a>
</li>
<li>actual_compound_
: <a class="el" href="classOpenMS_1_1Internal_1_1TraMLHandler.html#aa2c582ba7ae294b2760b13f3f76528e4">TraMLHandler</a>
</li>
<li>actual_configuration_
: <a class="el" href="classOpenMS_1_1Internal_1_1TraMLHandler.html#a60d569b204b71859ef4a09f5f641ec6e">TraMLHandler</a>
</li>
<li>actual_contact_
: <a class="el" href="classOpenMS_1_1Internal_1_1TraMLHandler.html#a53a859cad14220e21cfca51751038495">TraMLHandler</a>
</li>
<li>actual_id_
: <a class="el" href="classOpenMS_1_1XTandemXMLFile.html#a3e1c7a1c177b3dcbc3686e9ff1f8fa94">XTandemXMLFile</a>
</li>
<li>actual_instrument_
: <a class="el" href="classOpenMS_1_1Internal_1_1TraMLHandler.html#ac3e740252c73f3ac628d50daeef6e2da">TraMLHandler</a>
</li>
<li>actual_intermediate_products_
: <a class="el" href="classOpenMS_1_1Internal_1_1TraMLHandler.html#a0eeb1544d7edd7ec6866f6c7ea5a2022">TraMLHandler</a>
</li>
<li>actual_interpretation_
: <a class="el" href="classOpenMS_1_1Internal_1_1TraMLHandler.html#a328a0477d358bc7588547bff41d9e051">TraMLHandler</a>
</li>
<li>actual_mod_site_
: <a class="el" href="classOpenMS_1_1OMSSAXMLFile.html#ae3b91376f11377b07f7cb15eae1eb4ca">OMSSAXMLFile</a>
</li>
<li>actual_mod_type_
: <a class="el" href="classOpenMS_1_1OMSSAXMLFile.html#aba6aefe8110d89d821425146602b3cf5">OMSSAXMLFile</a>
</li>
<li>actual_modifications_
: <a class="el" href="classOpenMS_1_1PepXMLFileMascot.html#a92d81961238e2836263b2bb23e15a53f">PepXMLFileMascot</a>
</li>
<li>actual_note_
: <a class="el" href="classOpenMS_1_1Internal_1_1XTandemInfileXMLHandler.html#af72455177e01655e4aebbf81f64bee00">XTandemInfileXMLHandler</a>
</li>
<li>actual_pep_
: <a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html#ac721cab8a1772a2739c5ad71f307685b">EdwardsLippertIterator</a>
, <a class="el" href="classOpenMS_1_1TrypticIterator.html#ac721cab8a1772a2739c5ad71f307685b">TrypticIterator</a>
</li>
<li>actual_peptide_
: <a class="el" href="classOpenMS_1_1Internal_1_1MzIdentMLHandler.html#aacf23a3d47e383f29cb9529f3feaf178">MzIdentMLHandler</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1TraMLHandler.html#a1e30bfe3486ea0d7dd095d04448edcca">TraMLHandler</a>
</li>
<li>actual_peptide_hit_
: <a class="el" href="classOpenMS_1_1Internal_1_1MascotXMLHandler.html#a43cc7d5ee6248c0217e00a0144679937">MascotXMLHandler</a>
, <a class="el" href="classOpenMS_1_1OMSSAXMLFile.html#a43cc7d5ee6248c0217e00a0144679937">OMSSAXMLFile</a>
</li>
<li>actual_peptide_id_
: <a class="el" href="classOpenMS_1_1OMSSAXMLFile.html#a31fe0c91f986f6ee0f80c8ec6800d429">OMSSAXMLFile</a>
</li>
<li>actual_prediction_
: <a class="el" href="classOpenMS_1_1Internal_1_1TraMLHandler.html#ae4fd60017080711f0adbc6ea2bb5f362">TraMLHandler</a>
</li>
<li>actual_product_
: <a class="el" href="classOpenMS_1_1Internal_1_1TraMLHandler.html#a05279c5b44523f8ed4006b803eb2d343">TraMLHandler</a>
</li>
<li>actual_protein_
: <a class="el" href="classOpenMS_1_1Internal_1_1MzIdentMLHandler.html#a1890f7dc2cc750bdddfd46ede76847b4">MzIdentMLHandler</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1TraMLHandler.html#aef104b4639d3f1625210fe2033662dbe">TraMLHandler</a>
</li>
<li>actual_protein_hit_
: <a class="el" href="classOpenMS_1_1Internal_1_1MascotXMLHandler.html#a93a77811f5326cca0fb9d8bffc8067de">MascotXMLHandler</a>
, <a class="el" href="classOpenMS_1_1OMSSAXMLFile.html#a93a77811f5326cca0fb9d8bffc8067de">OMSSAXMLFile</a>
</li>
<li>actual_protein_id_
: <a class="el" href="classOpenMS_1_1OMSSAXMLFile.html#a2309dbcbc3196dd9c0b71e16c374db22">OMSSAXMLFile</a>
, <a class="el" href="classOpenMS_1_1XTandemXMLFile.html#a64e0feb8aa057b68c2b07dd46a75ab7e">XTandemXMLFile</a>
</li>
<li>actual_publication_
: <a class="el" href="classOpenMS_1_1Internal_1_1TraMLHandler.html#a56e254e778dfc73fe999fee0644aa9f3">TraMLHandler</a>
</li>
<li>actual_query_
: <a class="el" href="classOpenMS_1_1Internal_1_1MascotXMLHandler.html#a0d2018e966345d3ec6940b163bd7004c">MascotXMLHandler</a>
</li>
<li>actual_rt_
: <a class="el" href="classOpenMS_1_1Internal_1_1TraMLHandler.html#a2aa4980ce934f6428f7ca730de8a2b2c">TraMLHandler</a>
</li>
<li>actual_rule_
: <a class="el" href="classOpenMS_1_1CVMappingFile.html#acda11fee6d99654dea5897a62e3ecd70">CVMappingFile</a>
</li>
<li>actual_seq_
: <a class="el" href="classOpenMS_1_1FastaIterator.html#af7ef9d19dd85acda2504595982f20e75">FastaIterator</a>
</li>
<li>actual_sequence_
: <a class="el" href="classOpenMS_1_1PepXMLFileMascot.html#a401f472c368bd5c81cd03911ffa0e072">PepXMLFileMascot</a>
</li>
<li>actual_software_
: <a class="el" href="classOpenMS_1_1Internal_1_1TraMLHandler.html#aecdce89cce669899eff616f8d02c80a1">TraMLHandler</a>
</li>
<li>actual_sourcefile_
: <a class="el" href="classOpenMS_1_1Internal_1_1TraMLHandler.html#a5bcb80481988520ad0e87c8002dc771b">TraMLHandler</a>
</li>
<li>actual_start_
: <a class="el" href="classOpenMS_1_1XTandemXMLFile.html#a3f33a08afa9670af82a5b7390be8ce62">XTandemXMLFile</a>
</li>
<li>actual_stop_
: <a class="el" href="classOpenMS_1_1XTandemXMLFile.html#a8253875d5b4f07b83a8d339ccfb9b9fd">XTandemXMLFile</a>
</li>
<li>actual_target_
: <a class="el" href="classOpenMS_1_1Internal_1_1TraMLHandler.html#aef70be2e392164c3336eba95987fc5b6">TraMLHandler</a>
</li>
<li>actual_title_
: <a class="el" href="classOpenMS_1_1Internal_1_1MascotXMLHandler.html#a6f1ee0b2e58773f8ae22d9dd85deacae">MascotXMLHandler</a>
, <a class="el" href="classOpenMS_1_1PepXMLFileMascot.html#a6f1ee0b2e58773f8ae22d9dd85deacae">PepXMLFileMascot</a>
</li>
<li>actual_transition_
: <a class="el" href="classOpenMS_1_1Internal_1_1TraMLHandler.html#a2366f28ba27d6fd4b5488c8ad4461318">TraMLHandler</a>
</li>
<li>actual_validation_
: <a class="el" href="classOpenMS_1_1Internal_1_1TraMLHandler.html#a520c90f4749c4d3b5b1b149b763b5bff">TraMLHandler</a>
</li>
<li>AD
: <a class="el" href="classOpenMS_1_1IonSource.html#aa1f350d16338b42e2384db2e5aa4a3f4ae63d77c61a2a5b9777024af082a36719">IonSource</a>
</li>
<li>ADC
: <a class="el" href="classOpenMS_1_1IonDetector.html#ab0301b5c82d74538dfffc98406254e11a5ec0e8ce4c96673614190a8852261f4f">IonDetector</a>
</li>
<li>ADC_sampling_frequency_
: <a class="el" href="classOpenMS_1_1IonDetector.html#a75346a675c1323974bde977ce10baeb6">IonDetector</a>
</li>
<li>add()
: <a class="el" href="classOpenMS_1_1BigString.html#a0018fbf09ab94596b2a0dac01709102f">BigString</a>
, <a class="el" href="classOpenMS_1_1Compomer.html#a39c17834a52d3f9f97bd2b41694afab0">Compomer</a>
, <a class="el" href="classOpenMS_1_1QTCluster.html#ad286f86f1cc646b4f54506c679378b54">QTCluster</a>
, <a class="el" href="classOpenMS_1_1DataFilters.html#a3c2decb5a7ca207dbf983c302a65471e">DataFilters</a>
, <a class="el" href="classOpenMS_1_1Math_1_1AveragePosition.html#aab83fef12a65ca4880219fc70de3aab5">AveragePosition< D ></a>
, <a class="el" href="classOpenMS_1_1MetaDataBrowser.html#aa3133215d8200425970b384a4a0f53d3">MetaDataBrowser</a>
, <a class="el" href="classOpenMS_1_1TOPPASResources.html#a83981a0888052447fb0fe6cbbd40fd7e">TOPPASResources</a>
</li>
<li>add1DSignal_()
: <a class="el" href="classOpenMS_1_1RawMSSignalSimulation.html#a6c9a6c5489b1e8d745d0ea9ac439161e">RawMSSignalSimulation</a>
</li>
<li>add2Buttons_()
: <a class="el" href="classOpenMS_1_1BaseVisualizerGUI.html#af48671564921b46379ea517739d390db">BaseVisualizerGUI</a>
</li>
<li>add2DSignal_()
: <a class="el" href="classOpenMS_1_1RawMSSignalSimulation.html#a211e45de4d29779d4e6ba3da564bec39">RawMSSignalSimulation</a>
</li>
<li>add_()
: <a class="el" href="classOpenMS_1_1MetaInfoVisualizer.html#aaa297c2cb3c26e8e8a37a3f06f487917">MetaInfoVisualizer</a>
</li>
<li>add_2d_context_
: <a class="el" href="classOpenMS_1_1TOPPViewBase.html#ac3eb91f6aacdfb23d36ef8947037d718">TOPPViewBase</a>
</li>
<li>add_alignment_error()
: <a class="el" href="classOpenMS_1_1LCMS.html#a7185157195b5d65d84fcebe23ca38f82">LCMS</a>
</li>
<li>add_eluent_button_
: <a class="el" href="classOpenMS_1_1GradientVisualizer.html#a4616cb9f40bfbb390a5f4c96c73ce175">GradientVisualizer</a>
</li>
<li>add_feature()
: <a class="el" href="classOpenMS_1_1LCMS.html#ad54ee79a5a849bfe2b24d22fafdfa139">LCMS</a>
</li>
<li>add_LC_elution_peak()
: <a class="el" href="classOpenMS_1_1LCMSCData.html#aea8cfd0a7f57fc6ea53f2ccaafd12847">LCMSCData</a>
</li>
<li>add_matched_feature()
: <a class="el" href="classOpenMS_1_1SHFeature.html#acbd63f22e082a8effd3b12e1bdad9303">SHFeature</a>
</li>
<li>add_modification()
: <a class="el" href="classOpenMS_1_1MS2Info.html#a0cf32cecd3469b66b92cb42b80173f26">MS2Info</a>
</li>
<li>add_modification_()
: <a class="el" href="classOpenMS_1_1TransitionTSVReader.html#ac2986b272b16fac328a333b39f80231c">TransitionTSVReader</a>
</li>
<li>add_MS2_info()
: <a class="el" href="classOpenMS_1_1SHFeature.html#a0dd0293abfa15d42c75886f7117521ba">SHFeature</a>
</li>
<li>add_raw_peak_to_LC_MS_run()
: <a class="el" href="classOpenMS_1_1FTPeakDetectController.html#a4dd12bf5c82e3a8444811458a6cd6410">FTPeakDetectController</a>
</li>
<li>add_raw_spec_name()
: <a class="el" href="classOpenMS_1_1LCMS.html#a6ac2db2287b5133555895597d19408a6">LCMS</a>
</li>
<li>add_raw_spec_name_map()
: <a class="el" href="classOpenMS_1_1LCMS.html#af262b2edcfb4150cc0e6a8c164950854">LCMS</a>
</li>
<li>add_scan_raw_data()
: <a class="el" href="classOpenMS_1_1ProcessData.html#ae646c09d0fbbebe79244f74b4541074d">ProcessData</a>
</li>
<li>add_timepoint_button_
: <a class="el" href="classOpenMS_1_1GradientVisualizer.html#af895caf2dfba129ddbfe2fc6c453087c">GradientVisualizer</a>
</li>
<li>add_up_spectra_
: <a class="el" href="classOpenMS_1_1MRMFeatureFinderScoring.html#a2b03153c17ac2f3ace8b5d471a98dd53">MRMFeatureFinderScoring</a>
</li>
<li>addAbundantImmoniumIons()
: <a class="el" href="classOpenMS_1_1TheoreticalSpectrumGenerator.html#a7ef871b1fbe9f6cc20d547aee63d0873">TheoreticalSpectrumGenerator</a>
</li>
<li>addBaseLine_()
: <a class="el" href="classOpenMS_1_1RawMSSignalSimulation.html#ac264d116286d6f4264b024ec0941cf7f">RawMSSignalSimulation</a>
</li>
<li>addBooleanComboBox_()
: <a class="el" href="classOpenMS_1_1BaseVisualizerGUI.html#ae9b734259b9048dfeacbd9aa8a797c94">BaseVisualizerGUI</a>
</li>
<li>addButton_()
: <a class="el" href="classOpenMS_1_1BaseVisualizerGUI.html#a8d50322cb71852778c1587357789f28d">BaseVisualizerGUI</a>
</li>
<li>addbutton_
: <a class="el" href="classOpenMS_1_1MetaInfoVisualizer.html#abc2a8bab8142379710752f8dfc049da4">MetaInfoVisualizer</a>
</li>
<li>addChromatogram()
: <a class="el" href="classOpenMS_1_1MRMTransitionGroup.html#a6b636a97f3625bc651977bcec2a98919">MRMTransitionGroup< SpectrumType, TransitionType ></a>
, <a class="el" href="classOpenMS_1_1MSExperiment.html#a37eb544fb451472f4679589fee735df4">MSExperiment< PeakT, ChromatogramPeakT ></a>
</li>
<li>addColumn()
: <a class="el" href="classOpenMS_1_1LPWrapper.html#a04a9300b8b9ea4bcabd7f968f0cc16c9">LPWrapper</a>
</li>
<li>addComboBox_()
: <a class="el" href="classOpenMS_1_1BaseVisualizerGUI.html#a097741721d4301a8b8b546e20e749411">BaseVisualizerGUI</a>
</li>
<li>addCompound()
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#aaaef1de4f65364463ffe55b9a9963f68">TargetedExperiment</a>
</li>
<li>addConfiguration()
: <a class="el" href="classOpenMS_1_1IncludeExcludeTarget.html#a23d123c6c4a5408d11a657ba642a3a7d">IncludeExcludeTarget</a>
, <a class="el" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#a8917b2af9acc35d3776531949dcafd37">TraMLProduct</a>
</li>
<li>addConsensusMap()
: <a class="el" href="classOpenMS_1_1MSQuantifications.html#ac9541c6fed8bf1fb085889bd5533ab84">MSQuantifications</a>
</li>
<li>addContact()
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#af99c90b032d9d618eab2c46aa54072ec">TargetedExperiment</a>
</li>
<li>addConvexHull()
: <a class="el" href="classOpenMS_1_1FeaFiModule.html#ac641d17ba54cde66c331d17bdee355e8">FeaFiModule< PeakType, FeatureType ></a>
</li>
<li>addCV()
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#a79eac977e7e584579cd3a4d69252cb43">TargetedExperiment</a>
</li>
<li>addCVReference()
: <a class="el" href="classOpenMS_1_1CVMappings.html#ac3885bb66b5b7a970d8acbfee29f4a05">CVMappings</a>
</li>
<li>addCVTerm()
: <a class="el" href="classOpenMS_1_1CVMappingRule.html#a8ceef9133a5978af51cecbabcd3b5f12">CVMappingRule</a>
, <a class="el" href="classOpenMS_1_1CVTermList.html#a90879baad2c11f3b77d87bbf255f31c8">CVTermList</a>
</li>
<li>addData()
: <a class="el" href="classOpenMS_1_1TOPPViewBase.html#afe89e2ae7174e81f9dea2bbc9a94c43d">TOPPViewBase</a>
</li>
<li>addDataDB()
: <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a0b768098d8235f4904a38ec53ef7d984">TOPPViewBase</a>
</li>
<li>addDataFile()
: <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a1c92b33d10330879ab9d4bc2bb888d07">TOPPViewBase</a>
</li>
<li>addDataProcessing_()
: <a class="el" href="classOpenMS_1_1TOPPBase.html#a1254afd939487eab144c794a247fca86">TOPPBase</a>
, <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#aaac8f1a76ed8daa37ed605f1dd60d22a">SpectrumCanvas</a>
</li>
<li>addDetectorNoise_()
: <a class="el" href="classOpenMS_1_1RawMSSignalSimulation.html#a860237be42592676bb9a7f9da6e50fd5">RawMSSignalSimulation</a>
</li>
<li>addDoubleLineEdit_()
: <a class="el" href="classOpenMS_1_1BaseVisualizerGUI.html#abe2724437745df33ab58a365c6cc7693">BaseVisualizerGUI</a>
</li>
<li>addEdge()
: <a class="el" href="classOpenMS_1_1TOPPASScene.html#aafc30e11c67f9b893bdf5b0fbdc088f0">TOPPASScene</a>
</li>
<li>addEluent()
: <a class="el" href="classOpenMS_1_1Gradient.html#af960b17f6274c240802b2b2ee1fe2d93">Gradient</a>
</li>
<li>addEluent_()
: <a class="el" href="classOpenMS_1_1GradientVisualizer.html#ac840aab74282d770843a33c4cbbbabc2">GradientVisualizer</a>
</li>
<li>addEmptyLine_()
: <a class="el" href="classOpenMS_1_1TOPPBase.html#a16d8261b0f0279c408f75e7470d47cb9">TOPPBase</a>
</li>
<li>addEnzymeInfo()
: <a class="el" href="classOpenMS_1_1SequestInfile.html#a26f2d00ec15065d136124df4b1c8b6f2">SequestInfile</a>
</li>
<li>addExcludeTarget()
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#aa60eb5de70aefb172abd7d40281d770b">TargetedExperiment</a>
</li>
<li>addExternalType()
: <a class="el" href="structOpenMS_1_1Internal_1_1ToolDescription.html#acc171675488671f3a0610ace36ec1d87">ToolDescription</a>
</li>
<li>addFakeMSMSToFeature()
: <a class="el" href="classOpenMS_1_1FTPeakDetectController.html#a2de0397680a582ca964c0ffab9ef8af6">FTPeakDetectController</a>
</li>
<li>addFeature()
: <a class="el" href="classOpenMS_1_1MRMFeature.html#afb0c149f5f33fa1a4284169a6164efa9">MRMFeature</a>
, <a class="el" href="classOpenMS_1_1MRMTransitionGroup.html#ad54c2606255628d4fe2af3793b1b3da4">MRMTransitionGroup< SpectrumType, TransitionType ></a>
</li>
<li>addFile()
: <a class="el" href="classOpenMS_1_1FileWatcher.html#ad2ea80368c90fd817557e390ca51b763">FileWatcher</a>
</li>
<li>addFilter()
: <a class="el" href="classOpenMS_1_1SILACFiltering.html#a0a5684531570b4b875da9016c2d9a5bc">SILACFiltering</a>
</li>
<li>addHit()
: <a class="el" href="classOpenMS_1_1SpectrumIdentification.html#ab4157a78217d2fe89fac09cba2da3c84">SpectrumIdentification</a>
, <a class="el" href="structseqan_1_1FoundProteinFunctor.html#a0a70dceb8e235a6736090989e40c5df9">FoundProteinFunctor</a>
</li>
<li>addHoveringEdge()
: <a class="el" href="classOpenMS_1_1TOPPASScene.html#aae0e97bbef060e784e889f5af74860ed">TOPPASScene</a>
</li>
<li>addIncludeTarget()
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#ac84a0f845b7c468071391c3ab3db8559">TargetedExperiment</a>
</li>
<li>addInEdge()
: <a class="el" href="classOpenMS_1_1TOPPASVertex.html#a41b2212ef985670b1cf803b749c5d1be">TOPPASVertex</a>
</li>
<li>addInstrument()
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#a3c3a76a890bf2f5e7777c5aa0b04e8dc">TargetedExperiment</a>
</li>
<li>addIntensity()
: <a class="el" href="classOpenMS_1_1BackgroundIntensityBin.html#ad8cbdd7ceec17b7da82aae92c5696c78">BackgroundIntensityBin</a>
</li>
<li>addIntermediateProduct()
: <a class="el" href="classOpenMS_1_1ReactionMonitoringTransition.html#a4fb35a74a5dc77d6aee5438c682b230f">ReactionMonitoringTransition</a>
</li>
<li>addInterpretation()
: <a class="el" href="classOpenMS_1_1IncludeExcludeTarget.html#acc5805c7fd6827bd6a645d83bcb94279">IncludeExcludeTarget</a>
, <a class="el" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#abc303192a66dafadb680dd673921b59c">TraMLProduct</a>
</li>
<li>addIntLineEdit_()
: <a class="el" href="classOpenMS_1_1BaseVisualizerGUI.html#a50d3f68dd7461ac538ec562b930489bf">BaseVisualizerGUI</a>
</li>
<li>addIsotopeTrace()
: <a class="el" href="classOpenMS_1_1ConsensusIsotopePattern.html#aaa79c75aff7c7f630197379441936002">ConsensusIsotopePattern</a>
</li>
<li>addLabel_()
: <a class="el" href="classOpenMS_1_1BaseVisualizerGUI.html#a142088822622f13706de6b93cba68abd">BaseVisualizerGUI</a>
</li>
<li>addLabelAnnotation_()
: <a class="el" href="classOpenMS_1_1Spectrum1DCanvas.html#ae689407f53df5e427ce0c070817a518f">Spectrum1DCanvas</a>
</li>
<li>addLabelToProteinHits_()
: <a class="el" href="classOpenMS_1_1ICPLLabeler.html#a8ec6060c5c64b6458cf2ba40babb7abe">ICPLLabeler</a>
</li>
<li>addLayer()
: <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#a460614110c476c0a8cefdff342b80ae0">SpectrumCanvas</a>
</li>
<li>addLCelutionProfile()
: <a class="el" href="classOpenMS_1_1FTPeakDetectController.html#a54f13dcb383f1072bbb6859a1d0fdc35">FTPeakDetectController</a>
</li>
<li>addLineEdit_()
: <a class="el" href="classOpenMS_1_1BaseVisualizerGUI.html#ada249359afbb9c51617fe70fca8d64cc">BaseVisualizerGUI</a>
</li>
<li>addLineEditButton_()
: <a class="el" href="classOpenMS_1_1BaseVisualizerGUI.html#ad6d8b5f4f1124a4eb19974367cdeeca3">BaseVisualizerGUI</a>
</li>
<li>addListView_()
: <a class="el" href="classOpenMS_1_1BaseVisualizerGUI.html#a29975d3b3d23dc176f2cafab43da281d">BaseVisualizerGUI</a>
</li>
<li>addLossFormula()
: <a class="el" href="classOpenMS_1_1Residue.html#adba642adc13c85d6fde69d3b380f16e8">Residue</a>
</li>
<li>addLossName()
: <a class="el" href="classOpenMS_1_1Residue.html#a0df4a3428d609c941a78bf8895b4ea3d">Residue</a>
</li>
<li>addMappingRule()
: <a class="el" href="classOpenMS_1_1CVMappings.html#a1ee9697a1b1cc15f7de5d9c07dbd9399">CVMappings</a>
</li>
<li>addMassTrace()
: <a class="el" href="classOpenMS_1_1FeatureHypothesis.html#ae82a06ece94d2dac5f9d74d8e985a570">FeatureHypothesis</a>
</li>
<li>addMaxInclusionListSizeConstraints_()
: <a class="el" href="classOpenMS_1_1PSLPFormulation.html#acb8e7e2fdca6e28e41ccf00804745831">PSLPFormulation</a>
</li>
<li>addModification()
: <a class="el" href="classOpenMS_1_1ModificationDefinitionsSet.html#aed9453e41d13c97bf24154448ef78af6">ModificationDefinitionsSet</a>
</li>
<li>addModificationToPeptideHit_()
: <a class="el" href="classOpenMS_1_1ICPLLabeler.html#a81fcc68012a08eb22b67d6a592d88960">ICPLLabeler</a>
, <a class="el" href="classOpenMS_1_1ITRAQLabeler.html#a11125ff6e91726c0e92a376b7dd1ee05">ITRAQLabeler</a>
, <a class="el" href="classOpenMS_1_1O18Labeler.html#a81fcc68012a08eb22b67d6a592d88960">O18Labeler</a>
, <a class="el" href="classOpenMS_1_1SILACLabeler.html#a81fcc68012a08eb22b67d6a592d88960">SILACLabeler</a>
</li>
<li>addMS1elutionSignal()
: <a class="el" href="classOpenMS_1_1FeatureLCProfile.html#a9ec70d6c319112c0a168030647516821">FeatureLCProfile</a>
</li>
<li>addMS2ConsensusSpectrum()
: <a class="el" href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html#ab130bb4d52d844b9b442989df7d15bb1">ClusteredMS2ConsensusSpectrum</a>
</li>
<li>addMS2Feature()
: <a class="el" href="classOpenMS_1_1SHFeature.html#ac089e093b761406f5da922d9245a3876">SHFeature</a>
</li>
<li>addMS2FeatureToMS1Feature()
: <a class="el" href="classOpenMS_1_1FTPeakDetectController.html#aa18b8f45eeff8fc2a60b5e9e60c25ec1">FTPeakDetectController</a>
</li>
<li>addMS2Fragment()
: <a class="el" href="classOpenMS_1_1MS2ConsensusSpectrum.html#a4c10d718e0598244dd3403a5691e9d54">MS2ConsensusSpectrum</a>
</li>
<li>addMSLevel()
: <a class="el" href="classOpenMS_1_1PeakFileOptions.html#a74bc0f5f4cc2536c15fe20eceb206773">PeakFileOptions</a>
</li>
<li>addMSPeak()
: <a class="el" href="classOpenMS_1_1BackgroundIntensityBin.html#abe126ccc079c5b48d872636e786c649a">BackgroundIntensityBin</a>
</li>
<li>addNewState()
: <a class="el" href="classOpenMS_1_1HiddenMarkovModel.html#a33b8485e92a7eab1544f9da7fc6ef94f">HiddenMarkovModel</a>
</li>
<li>addNTermLossFormula()
: <a class="el" href="classOpenMS_1_1Residue.html#ad5c0d3ca53e3a4fba5a07158e9b1f7ff">Residue</a>
</li>
<li>addNTermLossName()
: <a class="el" href="classOpenMS_1_1Residue.html#a96eb6ef93f531a07f603b81295dd4ee3">Residue</a>
</li>
<li>addOutEdge()
: <a class="el" href="classOpenMS_1_1TOPPASVertex.html#a088a48297a4c933688d8d9edc367701b">TOPPASVertex</a>
</li>
<li>addOutsideMS1elutionSignal()
: <a class="el" href="classOpenMS_1_1FeatureLCProfile.html#ad446f1ea2a2d7b76b287567fe62b939c">FeatureLCProfile</a>
</li>
<li>addPeak_()
: <a class="el" href="classOpenMS_1_1PeakPickerCWT.html#aed7dd813b766325c5481424e9a901a08">PeakPickerCWT</a>
</li>
<li>addPeakAnnotation()
: <a class="el" href="classOpenMS_1_1Spectrum1DCanvas.html#abf6bbf87cead0d78aa8ab3e730938a27">Spectrum1DCanvas</a>
</li>
<li>addPeakMSScan()
: <a class="el" href="classOpenMS_1_1BackgroundControl.html#af9d8c6add1fb20d82d92a5f178fd7ab9">BackgroundControl</a>
</li>
<li>addPeaks()
: <a class="el" href="classOpenMS_1_1TheoreticalSpectrumGenerator.html#a5955bf657a4eaab0d1ac1319f916cc92">TheoreticalSpectrumGenerator</a>
</li>
<li>addPeaks_()
: <a class="el" href="classOpenMS_1_1PILISModel.html#a16f02882f30b54241554e2a96d01bf0e">PILISModel</a>
</li>
<li>addPeptide()
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#a54e1bfbdfa89b4abc2f22056a9bb13a6">TargetedExperiment</a>
</li>
<li>addPoint()
: <a class="el" href="classOpenMS_1_1ConvexHull2D.html#a2e47ab249f168435217f81800a63ea37">ConvexHull2D</a>
</li>
<li>addPoints()
: <a class="el" href="classOpenMS_1_1ConvexHull2D.html#ad84ba51670fc0bd9b6b2091ba27c3013">ConvexHull2D</a>
</li>
<li>addPrecursorAcquisitionNumberConstraint_()
: <a class="el" href="classOpenMS_1_1PSLPFormulation.html#ae9b0d6ee22f04f0a1ddabd628521bb08">PSLPFormulation</a>
</li>
<li>addPrecursorCVTerm()
: <a class="el" href="classOpenMS_1_1ReactionMonitoringTransition.html#ae7711cb38303fe16f304e1e1b7e1c674">ReactionMonitoringTransition</a>
, <a class="el" href="classOpenMS_1_1IncludeExcludeTarget.html#ae7711cb38303fe16f304e1e1b7e1c674">IncludeExcludeTarget</a>
</li>
<li>addPrecursorLabels1D_()
: <a class="el" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a7fe77b331367b1eb2b04311f25ef48a4">TOPPViewIdentificationViewBehavior</a>
</li>
<li>addPrecursorPeaks()
: <a class="el" href="classOpenMS_1_1TheoreticalSpectrumGenerator.html#aec98384c18792e9312ca12d334eb0eee">TheoreticalSpectrumGenerator</a>
</li>
<li>addPredecessorState()
: <a class="el" href="classOpenMS_1_1HMMState.html#a27417914e9b5763361281dc7c9b421a6">HMMState</a>
</li>
<li>addPredictionTerm()
: <a class="el" href="classOpenMS_1_1ReactionMonitoringTransition.html#add9ca8baaa351c398f4785c76f8433aa">ReactionMonitoringTransition</a>
, <a class="el" href="classOpenMS_1_1IncludeExcludeTarget.html#add9ca8baaa351c398f4785c76f8433aa">IncludeExcludeTarget</a>
</li>
<li>addProductCVTerm()
: <a class="el" href="classOpenMS_1_1ReactionMonitoringTransition.html#a57d5061011b9ef3ceef0d51e8a50f7e5">ReactionMonitoringTransition</a>
, <a class="el" href="classOpenMS_1_1IncludeExcludeTarget.html#a57d5061011b9ef3ceef0d51e8a50f7e5">IncludeExcludeTarget</a>
</li>
<li>addProtein()
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#aaadae361037e8e6b6d1ea797b365eb09">TargetedExperiment</a>
</li>
<li>addProteinAccession()
: <a class="el" href="classOpenMS_1_1PeptideHit.html#a49d90d2fa65c45386e5725386d7741fe">PeptideHit</a>
</li>
<li>addProteinCoverageConstraint_()
: <a class="el" href="classOpenMS_1_1PSLPFormulation.html#a7f90dbe3e72b9b6245c32206d9c2df47">PSLPFormulation</a>
</li>
<li>addProteinGroups_()
: <a class="el" href="classOpenMS_1_1IdXMLFile.html#abc36e46ff85f021a4bd9e23eea7e67fb">IdXMLFile</a>
</li>
<li>addProteinToILP_()
: <a class="el" href="classOpenMS_1_1PSLPFormulation.html#aacbd6aaa0fadc5a38bd714b16a01df01">PSLPFormulation</a>
</li>
<li>addPublication()
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#ae198d891229501c0e879a14dc9af8303">TargetedExperiment</a>
</li>
<li>addRatio()
: <a class="el" href="classOpenMS_1_1ConsensusFeature.html#a398f108aa8429a0bf91188323fdbee75">ConsensusFeature</a>
</li>
<li>addRecentFile_()
: <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a0931a9c806c4666cdec3f3910604ac2d">TOPPViewBase</a>
</li>
<li>addResidue()
: <a class="el" href="classOpenMS_1_1ResidueDB.html#aa19e9c2b843f782bf31a8f9a79bf0976">ResidueDB</a>
</li>
<li>addResidue_()
: <a class="el" href="classOpenMS_1_1ResidueDB.html#a1ab10c752e14e3986eb409975253c8bc">ResidueDB</a>
</li>
<li>addResidueSet()
: <a class="el" href="classOpenMS_1_1Residue.html#ae40a031caf27f6184474a4eb75db428e">Residue</a>
</li>
<li>address_
: <a class="el" href="classOpenMS_1_1ContactPerson.html#a98099e03895b53e6eea11616b46b073e">ContactPerson</a>
, <a class="el" href="classOpenMS_1_1ContactPersonVisualizer.html#a830e6f2f4d0228ceab560cddb327f7ab">ContactPersonVisualizer</a>
</li>
<li>addRow()
: <a class="el" href="classOpenMS_1_1LPWrapper.html#a74e9674979841fbb871a1aff5d1aaf09">LPWrapper</a>
</li>
<li>addRTBinCapacityConstraint_()
: <a class="el" href="classOpenMS_1_1PSLPFormulation.html#a3c1ef316108b552bb3e1d52eb5cf3be7">PSLPFormulation</a>
</li>
<li>addRunAttachment()
: <a class="el" href="classOpenMS_1_1QcMLFile.html#a3709c4e88dedfa8dc8a04a2da61bec7b">QcMLFile</a>
</li>
<li>addRunQualityParameter()
: <a class="el" href="classOpenMS_1_1QcMLFile.html#ae49f127917512308e362296567718e36">QcMLFile</a>
</li>
<li>addScore()
: <a class="el" href="classOpenMS_1_1MRMFeature.html#a8d4bb3e3b2f22cdaa1855d09f5d98a41">MRMFeature</a>
</li>
<li>addSearchFile()
: <a class="el" href="classOpenMS_1_1IDEvaluationBase.html#aef488ced33b7003c3eed1899b578e884">IDEvaluationBase</a>
</li>
<li>addSeparator_()
: <a class="el" href="classOpenMS_1_1BaseVisualizerGUI.html#a34a96a77e8f550db0f1ad844f0dfc49e">BaseVisualizerGUI</a>
</li>
<li>addSetAttachment()
: <a class="el" href="classOpenMS_1_1QcMLFile.html#af09593bca82308b8c64bd0995833140a">QcMLFile</a>
</li>
<li>addSetQualityParameter()
: <a class="el" href="classOpenMS_1_1QcMLFile.html#a4beb91929a29fcd0650344ad5d13afe0">QcMLFile</a>
</li>
<li>addShotNoise_()
: <a class="el" href="classOpenMS_1_1RawMSSignalSimulation.html#a563cc26d3df581dc1fbf6af58c7f9589">RawMSSignalSimulation</a>
</li>
<li>addSingleChargedIons_()
: <a class="el" href="classOpenMS_1_1CompNovoIonScoringBase.html#a7cd6a61d83eec5a9c1c4603e0e0724b9">CompNovoIonScoringBase</a>
</li>
<li>addSoftware()
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#a7ab18d77d0829f9f0aa6355db5fc7e71">TargetedExperiment</a>
</li>
<li>addSourceFile()
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#a752fd4b3b846a7a768fa6f2d375947c0">TargetedExperiment</a>
</li>
<li>addSpectrum()
: <a class="el" href="classOpenMS_1_1MSExperiment.html#ae9dafbb74a1a4c430ceef03e25ab8e10">MSExperiment< PeakT, ChromatogramPeakT ></a>
</li>
<li>addSpectrumIdentification()
: <a class="el" href="classOpenMS_1_1Identification.html#a066ab9bd34e89cea71b5532c391e5903">Identification</a>
</li>
<li>addStepSizeConstraint_()
: <a class="el" href="classOpenMS_1_1PSLPFormulation.html#ab8929efe83b307a688a4bd616e5b6394">PSLPFormulation</a>
</li>
<li>addSuccessorState()
: <a class="el" href="classOpenMS_1_1HMMState.html#ab156c76c0316ddb3ada407731840d7c0">HMMState</a>
</li>
<li>addSynonym()
: <a class="el" href="classOpenMS_1_1ResidueModification.html#ae00ea2fcf9b6420da3ddb261674167af">ResidueModification</a>
, <a class="el" href="classOpenMS_1_1Residue.html#ae00ea2fcf9b6420da3ddb261674167af">Residue</a>
</li>
<li>addSynonymTransition()
: <a class="el" href="classOpenMS_1_1HiddenMarkovModel.html#acaca1195a5471c2b261571073675fb58">HiddenMarkovModel</a>
</li>
<li>addTab()
: <a class="el" href="classOpenMS_1_1EnhancedTabBar.html#a724e639a4d5c2a3b97b741e371b69e2e">EnhancedTabBar</a>
, <a class="el" href="classOpenMS_1_1TOPPASTabBar.html#a724e639a4d5c2a3b97b741e371b69e2e">TOPPASTabBar</a>
</li>
<li>addTag()
: <a class="el" href="classOpenMS_1_1Param.html#a3e45661b2e4e8074da0bf2e391a93cbb">Param</a>
</li>
<li>addTags()
: <a class="el" href="classOpenMS_1_1Param.html#a5eaacd9125c5a727a03284e050cd8938">Param</a>
</li>
<li>addTargetCVTerm()
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#a9af1c5c0e482acec56e60821effe6149">TargetedExperiment</a>
</li>
<li>addText_()
: <a class="el" href="classOpenMS_1_1TOPPBase.html#a651cd858906ccd50871da7dbba6d4f67">TOPPBase</a>
</li>
<li>addTextEdit_()
: <a class="el" href="classOpenMS_1_1BaseVisualizerGUI.html#a0a7c2050829ff198d50cd15040ddb43c">BaseVisualizerGUI</a>
</li>
<li>addTheoreticalSpectrumLayer_()
: <a class="el" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a217c453a1ab4f11be27685e3d9f38fde">TOPPViewIdentificationViewBehavior</a>
</li>
<li>addTimepoint()
: <a class="el" href="classOpenMS_1_1Gradient.html#a717ede390995dbd5cccbd4d831027319">Gradient</a>
</li>
<li>addTimepoint_()
: <a class="el" href="classOpenMS_1_1GradientVisualizer.html#a70a1f2db6a74d668b085cc148091ad3a">GradientVisualizer</a>
</li>
<li>addToCache_()
: <a class="el" href="classOpenMS_1_1Logger_1_1LogStreamBuf.html#acd79d657304f6e29dd8f7b2cb7386337">LogStreamBuf</a>
</li>
<li>addToGroup()
: <a class="el" href="classOpenMS_1_1FeatureGroupingAlgorithmUnlabeled.html#a3c28d3e7ceae9570991221590e495da6">FeatureGroupingAlgorithmUnlabeled</a>
</li>
<li>addTOPPASFile()
: <a class="el" href="classOpenMS_1_1TOPPASBase.html#a582b9d08f4ab872a48b3c02157b98593">TOPPASBase</a>
</li>
<li>addTransition()
: <a class="el" href="classOpenMS_1_1MRMTransitionGroup.html#a57e977750ef7b1d7e8e5f8cce2b91f1e">MRMTransitionGroup< SpectrumType, TransitionType ></a>
, <a class="el" href="classOpenMS_1_1TargetedExperiment.html#aa269d279d1aaa3888e28cf6db84dcd49">TargetedExperiment</a>
</li>
<li>addTreatment()
: <a class="el" href="classOpenMS_1_1Sample.html#aed8975f433261ee670481a594eb2d74c">Sample</a>
</li>
<li>addTreeDistance_()
: <a class="el" href="classOpenMS_1_1HierarchicalClustering.html#a66176a12502c2f6c0ea114a48346d3ba">HierarchicalClustering< PointRef ></a>
</li>
<li>Adduct()
: <a class="el" href="classOpenMS_1_1Adduct.html#a7f96cd8431c8bc2a71b0d13bae84fbd6">Adduct</a>
</li>
<li>adduct_base_
: <a class="el" href="classOpenMS_1_1MassExplainer.html#a9eaaeb73367a71340a9bd9e8af68dd7d">MassExplainer</a>
</li>
<li>adduct_mass_
: <a class="el" href="classOpenMS_1_1AccurateMassSearchResult.html#a5bac3bd5087d3597ac44ec2d05a5cc4c">AccurateMassSearchResult</a>
</li>
<li>AdductsType
: <a class="el" href="classOpenMS_1_1Adduct.html#ac491cec851c0e0300106ac3bc8bfa460">Adduct</a>
, <a class="el" href="classOpenMS_1_1MassExplainer.html#af4f87e770c56cc4f47fd47833add8ba3">MassExplainer</a>
</li>
<li>addUpSpectra()
: <a class="el" href="classOpenMS_1_1SpectrumAddition.html#a66af26742cdb048bacaed720d147f7fb">SpectrumAddition</a>
</li>
<li>addUserLabelAnnotation_()
: <a class="el" href="classOpenMS_1_1Spectrum1DCanvas.html#ab294d62a960b3d04760da074c05f1d52">Spectrum1DCanvas</a>
</li>
<li>addUserPeakAnnotation_()
: <a class="el" href="classOpenMS_1_1Spectrum1DCanvas.html#a1fcfda8b790fd70f98f5d34bcb5c7656">Spectrum1DCanvas</a>
</li>
<li>addValue()
: <a class="el" href="classOpenMS_1_1Math_1_1BilinearInterpolation.html#aa4bf2770279318c9d30e1f26ab2c2704">BilinearInterpolation< Key, Value ></a>
, <a class="el" href="classOpenMS_1_1Math_1_1LinearInterpolation.html#adf5aa5db039c80ec47eaafa7dbef3a1a">LinearInterpolation< Key, Value ></a>
</li>
<li>addVertex()
: <a class="el" href="classOpenMS_1_1TOPPASScene.html#a690e5df66806c916c80a3ac2cc68e9c5">TOPPASScene</a>
</li>
<li>addVSpacer_()
: <a class="el" href="classOpenMS_1_1BaseVisualizerGUI.html#a1a17616e91cbfaf4d851c31b186a933b">BaseVisualizerGUI</a>
</li>
<li>addWhiteNoise_()
: <a class="el" href="classOpenMS_1_1RawMSSignalSimulation.html#a195e83f9d501e58a9b2ca18ae27768c9">RawMSSignalSimulation</a>
</li>
<li>adjustBuffer_()
: <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#a0fe9ea217282ec7fdb397bd541c4c8ad">SpectrumCanvas</a>
</li>
<li>adjustCorrectToMS1Precursor()
: <a class="el" href="classOpenMS_1_1ProcessData.html#ab05eb553a3fa7c9a7744d3e511166385">ProcessData</a>
</li>
<li>advanced
: <a class="el" href="structOpenMS_1_1ParameterInformation.html#abbf9b0c284ebe9507cd270f5f717f327">ParameterInformation</a>
</li>
<li>ADVANCED_ITEM
: <a class="el" href="classOpenMS_1_1ParamEditor.html#aae05225933a42f81e7c4a9fb286596f9a9c130536cd0bf2d743c08a85a034100d">ParamEditor</a>
</li>
<li>advanced_mode_
: <a class="el" href="classOpenMS_1_1ParamEditor.html#a32a39f03a8535cebaf2be22e14f33f01">ParamEditor</a>
</li>
<li>affected_amino_acids_
: <a class="el" href="classOpenMS_1_1Modification.html#a489bd9122ead366ab01e4baad8c4fbd8">Modification</a>
</li>
<li>affineGapalign_()
: <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithmSpectrumAlignment.html#a7141ee1dd0cfb6b893aa77cb2a29bd9e">MapAlignmentAlgorithmSpectrumAlignment</a>
</li>
<li>AI
: <a class="el" href="classOpenMS_1_1IonSource.html#aa1f350d16338b42e2384db2e5aa4a3f4a9c74caa56a3c05723eb1dbad44bc9bc3">IonSource</a>
</li>
<li>AIon
: <a class="el" href="classOpenMS_1_1Residue.html#a7651af21f9cf8ed6445415903fc6cb48a5e230ff3800ff3f428a407c1cef23ef5">Residue</a>
</li>
<li>algorithm_
: <a class="el" href="classOpenMS_1_1ModelFitter.html#ac230d1bc572fc770f8e254d4f06088cb">ModelFitter< PeakType, FeatureType ></a>
</li>
<li>align()
: <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithmPoseClustering.html#a8c5f81600ee8c144d0df1e00b21d0889">MapAlignmentAlgorithmPoseClustering</a>
</li>
<li>alignCompactFeatureMaps()
: <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithm.html#a9e66a73174d03975d49a7e9b3f8854df">MapAlignmentAlgorithm</a>
</li>
<li>alignConsensusMaps()
: <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithm.html#a7385e8b646ae9d282c3c06abf1620083">MapAlignmentAlgorithm</a>
, <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithmIdentification.html#a7385e8b646ae9d282c3c06abf1620083">MapAlignmentAlgorithmIdentification</a>
</li>
<li>aligned_peaks_indices_
: <a class="el" href="classOpenMS_1_1Spectrum1DCanvas.html#a93947b05937169408488c66e24b2ea85">Spectrum1DCanvas</a>
</li>
<li>aligned_peaks_mz_delta_
: <a class="el" href="classOpenMS_1_1Spectrum1DCanvas.html#ab8f2d5d3a6e2c36a3e1a52534c457736">Spectrum1DCanvas</a>
</li>
<li>alignFeatureMaps()
: <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithmIdentification.html#a32c9e0577b4455dbc2d3493079ef1c81">MapAlignmentAlgorithmIdentification</a>
, <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithm.html#a32c9e0577b4455dbc2d3493079ef1c81">MapAlignmentAlgorithm</a>
</li>
<li>alignMaps()
: <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithmIdentification.html#a9680275b7ea4140fd97583fe092a0038">MapAlignmentAlgorithmIdentification</a>
</li>
<li>ALIGNMENT
: <a class="el" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9a8d86de0851abd047aef8c1cbb3c1603b">DataProcessing</a>
</li>
<li>Alignment
: <a class="el" href="classOpenMS_1_1AxisPainter.html#acdfaca60ec19c0265bac2692d7982726">AxisPainter</a>
</li>
<li>alignment_
: <a class="el" href="classOpenMS_1_1AxisWidget.html#afd2126b36a6225b5436d1dfa1acd5196">AxisWidget</a>
</li>
<li>ALIGNMENT_ERROR
: <a class="el" href="classOpenMS_1_1LCMS.html#a7d7ac4e8df8fa9177f7184c42f3aa7cd">LCMS</a>
</li>
<li>alignment_error_down
: <a class="el" href="classOpenMS_1_1SHFeature.html#ae1c866c0cebfab602252903534bd527f">SHFeature</a>
</li>
<li>alignment_error_up
: <a class="el" href="classOpenMS_1_1SHFeature.html#a80ec63435b120c76cfd6f0d237df0c1e">SHFeature</a>
</li>
<li>alignment_layer_1_
: <a class="el" href="classOpenMS_1_1Spectrum1DCanvas.html#adaa3f3c5421ef5b3731926137b287bc7">Spectrum1DCanvas</a>
</li>
<li>alignment_layer_2_
: <a class="el" href="classOpenMS_1_1Spectrum1DCanvas.html#aec26cfbd1f400d5740c58c95116d8c8e">Spectrum1DCanvas</a>
</li>
<li>alignment_score_
: <a class="el" href="classOpenMS_1_1Spectrum1DCanvas.html#a0952570b96c5f839f88911243bae1a3a">Spectrum1DCanvas</a>
</li>
<li>alignPeakMaps()
: <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithmIdentification.html#a2038727c06b2e23bf60e1d21d7179815">MapAlignmentAlgorithmIdentification</a>
, <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithmSpectrumAlignment.html#a2038727c06b2e23bf60e1d21d7179815">MapAlignmentAlgorithmSpectrumAlignment</a>
, <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithm.html#a2038727c06b2e23bf60e1d21d7179815">MapAlignmentAlgorithm</a>
</li>
<li>alignPeptideIdentifications()
: <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithm.html#a4f223602464cbafef563871036b5dfc1">MapAlignmentAlgorithm</a>
, <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithmIdentification.html#a4f223602464cbafef563871036b5dfc1">MapAlignmentAlgorithmIdentification</a>
</li>
<li>aliphatic()
: <a class="el" href="classOpenMS_1_1AAIndex.html#ab91b07382d63b0739b68ef5ec232de4f">AAIndex</a>
</li>
<li>allInputsReady()
: <a class="el" href="classOpenMS_1_1TOPPASMergerVertex.html#aa1c1781a6b620fbc2009bf82acf73c8d">TOPPASMergerVertex</a>
, <a class="el" href="classOpenMS_1_1TOPPASVertex.html#aa1c1781a6b620fbc2009bf82acf73c8d">TOPPASVertex</a>
</li>
<li>allocator_type
: <a class="el" href="classOpenMS_1_1Matrix.html#a0a189ba1d918e84589e43ebfcea3cbc5">Matrix< Value ></a>
, <a class="el" href="classOpenMS_1_1SparseVector.html#a21c22452709ca56b322800f7f1a3881d">SparseVector< Value ></a>
</li>
<li>AllocatorType
: <a class="el" href="classOpenMS_1_1Matrix.html#a7689bbae07cd98b4f0808673d6b038f1">Matrix< Value ></a>
</li>
<li>allow_children_
: <a class="el" href="classOpenMS_1_1CVMappingTerm.html#a88a03a8ae39f544800976c6bf579e38a">CVMappingTerm</a>
</li>
<li>allow_missing_peaks
: <a class="el" href="classOpenMS_1_1SILACAnalyzer.html#a0469ba5f938fd955f3bf73c1ef2e213b">SILACAnalyzer</a>
</li>
<li>allow_missing_peaks_
: <a class="el" href="classOpenMS_1_1SILACFilter.html#a661ca7fc27d997f31cb2f5043a25571f">SILACFilter</a>
</li>
<li>allow_output_recycling_
: <a class="el" href="classOpenMS_1_1TOPPASVertex.html#aed8c816b3f13d1faa226e55dc283a3fb">TOPPASVertex</a>
</li>
<li>allow_short_numbers_
: <a class="el" href="classOpenMS_1_1AxisWidget.html#ad77897be210d28bdf47917a6177e56c0">AxisWidget</a>
</li>
<li>allowed_threads_
: <a class="el" href="classOpenMS_1_1TOPPASScene.html#a1a608d1003390c3ac88a925b9a0a1da2">TOPPASScene</a>
</li>
<li>alphabet_
: <a class="el" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a154503c35e5f3d8aab8ea82d4671fa39">IntegerMassDecomposer< ValueType, DecompositionValueType ></a>
, <a class="el" href="classOpenMS_1_1MassDecompositionAlgorithm.html#aa2b990f6e4830bd038114b273769d8a4">MassDecompositionAlgorithm</a>
</li>
<li>alphabet_mass_type
: <a class="el" href="classOpenMS_1_1ims_1_1Weights.html#aa0ac61919b9f342f65930c46f09101a6">Weights</a>
</li>
<li>alphabet_masses_
: <a class="el" href="classOpenMS_1_1ims_1_1Weights.html#a20ae07a191847f3c0ff23e807c9f5432">Weights</a>
</li>
<li>alphabet_masses_type
: <a class="el" href="classOpenMS_1_1ims_1_1Weights.html#abc9cc7a4c2b93b737bcb0183904e0913">Weights</a>
</li>
<li>AM_MEASURE
: <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#abab424024a80824f65cbb8fcf68473cea5bb30c2ccb76ab815d1ffadd9e869e76">SpectrumCanvas</a>
</li>
<li>AM_MOVE
: <a class="el" href="classOpenMS_1_1TOPPASScene.html#a6cc566e3bbfdcb8a5a9d85941238cef5a483a72c360c2c5ecc14067035f6b0502">TOPPASScene</a>
</li>
<li>AM_NEW_EDGE
: <a class="el" href="classOpenMS_1_1TOPPASScene.html#a6cc566e3bbfdcb8a5a9d85941238cef5a5ba5558f7aa32a11abc3c49c1180c1ae">TOPPASScene</a>
</li>
<li>AM_TRANSLATE
: <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#abab424024a80824f65cbb8fcf68473cea0e8ebe0510a1dcde08443af1463c3d32">SpectrumCanvas</a>
</li>
<li>AM_ZOOM
: <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#abab424024a80824f65cbb8fcf68473cea06789a4e4e8111bf0cd44bac3852f1cb">SpectrumCanvas</a>
</li>
<li>ambig_features
: <a class="el" href="structOpenMS_1_1PeptideAndProteinQuant_1_1Statistics.html#ae40d96f23b1c6bba830deb6e18903f3b">PeptideAndProteinQuant::Statistics</a>
</li>
<li>ambiguity_members
: <a class="el" href="structOpenMS_1_1MzTabProteinSectionRow.html#a7db00fe01e4f1936dc2cc7d107d40a61">MzTabProteinSectionRow</a>
</li>
<li>aminoacid
: <a class="el" href="structOpenMS_1_1PepXMLFile_1_1AminoAcidModification.html#a0883863ca7e426c9b5a4e52124d7a86b">PepXMLFile::AminoAcidModification</a>
</li>
<li>AminoAcidModification()
: <a class="el" href="structOpenMS_1_1PepXMLFile_1_1AminoAcidModification.html#a113b9d8040e40cf4386efc3796fbebfb">PepXMLFile::AminoAcidModification</a>
</li>
<li>amount_
: <a class="el" href="classOpenMS_1_1Adduct.html#aed89fcff11f3d83f30864742199ef459">Adduct</a>
</li>
<li>analysis_summary_
: <a class="el" href="classOpenMS_1_1MSQuantifications.html#ac921d188f635ab1234e4302217952fcc">MSQuantifications</a>
</li>
<li>AnalysisSummary()
: <a class="el" href="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary.html#ab95b0c8f497362cea18e64362fe979cf">MSQuantifications::AnalysisSummary</a>
</li>
<li>ANALYSISXML
: <a class="el" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7ad653ca4a37a3db780dc25e18692a772e">FileTypes</a>
</li>
<li>analyzeHeader_()
: <a class="el" href="classOpenMS_1_1QuantitativeExperimentalDesign.html#a8ec4eaf673a5989fcb3601101c9e5703">QuantitativeExperimentalDesign</a>
</li>
<li>analyzeLCElutionPeak()
: <a class="el" href="classOpenMS_1_1LCElutionPeak.html#a6fec4c9e10aa7806d2e811e5f59f2219">LCElutionPeak</a>
</li>
<li>ANALYZERNULL
: <a class="el" href="classOpenMS_1_1MassAnalyzer.html#a134230547dd6de10b20f6904d9422ec3a39869181b0414af3507c53e260851151">MassAnalyzer</a>
</li>
<li>AnalyzerType
: <a class="el" href="classOpenMS_1_1MassAnalyzer.html#a134230547dd6de10b20f6904d9422ec3">MassAnalyzer</a>
</li>
<li>anchorPoints_
: <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithmSpectrumAlignment.html#a4e8ad8a7db1b7e3ee65134b631931a1a">MapAlignmentAlgorithmSpectrumAlignment</a>
</li>
<li>AND
: <a class="el" href="classOpenMS_1_1CVMappingRule.html#a3ccd7345c0840d23090d567a704bb5faa865555c9f2e0458a7078486aa1b3254f">CVMappingRule</a>
</li>
<li>annotate()
: <a class="el" href="classOpenMS_1_1IDMapper.html#ac9d8f90a40a4e4ec544df79709a4ee51">IDMapper</a>
</li>
<li>annotateWithID()
: <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a998e79e7149ca4ef1ca8fa1625ffa250">TOPPViewBase</a>
</li>
<li>Annotation
: <a class="el" href="structOpenMS_1_1TransitionTSVReader_1_1TSVTransition.html#af51521d74549ef5cac1d9d2a9eca73e1">TransitionTSVReader::TSVTransition</a>
</li>
<li>Annotation1DDistanceItem()
: <a class="el" href="classOpenMS_1_1Annotation1DDistanceItem.html#aa76c564f230e2ecae7edf7cad0c69449">Annotation1DDistanceItem</a>
</li>
<li>Annotation1DItem()
: <a class="el" href="classOpenMS_1_1Annotation1DItem.html#aab8b7dcab111b80266fc1adfc2823114">Annotation1DItem</a>
</li>
<li>Annotation1DPeakItem()
: <a class="el" href="classOpenMS_1_1Annotation1DPeakItem.html#a3f172495ec8974f361186ba58a39f26d">Annotation1DPeakItem</a>
</li>
<li>Annotation1DTextItem()
: <a class="el" href="classOpenMS_1_1Annotation1DTextItem.html#a8273f6ddb26201079a986522843d0a7e">Annotation1DTextItem</a>
</li>
<li>Annotations1DContainer()
: <a class="el" href="classOpenMS_1_1Annotations1DContainer.html#acea5695fad3ecb2a618d6639e6aa29cf">Annotations1DContainer</a>
</li>
<li>annotations_
: <a class="el" href="classOpenMS_1_1QTCluster.html#a614d1180d16ecbaa6639aa9462e21b17">QTCluster</a>
, <a class="el" href="classOpenMS_1_1GridFeature.html#a614d1180d16ecbaa6639aa9462e21b17">GridFeature</a>
</li>
<li>annotations_1d
: <a class="el" href="classOpenMS_1_1LayerData.html#a447a67f27af372b2cb68cc0cf64186e9">LayerData</a>
</li>
<li>AnnotationState
: <a class="el" href="classOpenMS_1_1BaseFeature.html#ad99a6d91a3af7fb0c9914b2f41556556">BaseFeature</a>
</li>
<li>AnnotationStatistics()
: <a class="el" href="structOpenMS_1_1AnnotationStatistics.html#ab8aa0b82ba2750e3ef5922efd36cbb0e">AnnotationStatistics</a>
</li>
<li>ANYWHERE
: <a class="el" href="classOpenMS_1_1ResidueModification.html#aa9cd341ac30bebce3b85a3dc64baef65aa7c32dd2134d02c787b35aa8307d2a53">ResidueModification</a>
</li>
<li>AP_MALDI
: <a class="el" href="classOpenMS_1_1IonSource.html#aa1f350d16338b42e2384db2e5aa4a3f4adfcd7e7c05c5dda54aa06c36077abab0">IonSource</a>
</li>
<li>APCI
: <a class="el" href="classOpenMS_1_1IonSource.html#aa1f350d16338b42e2384db2e5aa4a3f4aa45f628d1930ccc096fd37583145fccb">IonSource</a>
</li>
<li>APEX
: <a class="el" href="classOpenMS_1_1LCElutionPeak.html#a721772ba0ec677852bf5c94ae467c195">LCElutionPeak</a>
</li>
<li>apex_peak_intensity
: <a class="el" href="classOpenMS_1_1SHFeature.html#ac864f0cac891260d78becdc5e2ba8f84">SHFeature</a>
</li>
<li>apex_rt_
: <a class="el" href="classOpenMS_1_1EGHModel.html#a87483f581239abdeea903ca471198257">EGHModel</a>
, <a class="el" href="classOpenMS_1_1EGHTraceFitter.html#aa053cf12454200551e38abb78a985955">EGHTraceFitter< PeakType ></a>
</li>
<li>apexMS1Signal
: <a class="el" href="classOpenMS_1_1FeatureLCProfile.html#abc89a1ef24d6cac2a727a132a18a41ad">FeatureLCProfile</a>
</li>
<li>apexScan
: <a class="el" href="classOpenMS_1_1MS2ConsensusSpectrum.html#ae01995af0b5069adad5d98980424329e">MS2ConsensusSpectrum</a>
</li>
<li>API
: <a class="el" href="classOpenMS_1_1IonSource.html#aa1f350d16338b42e2384db2e5aa4a3f4a7fd5f3a93cf5139877f23acb316f99c0">IonSource</a>
</li>
<li>append()
: <a class="el" href="structOpenMS_1_1Internal_1_1ToolDescription.html#ac52f71e89ad0af682d33aef3bc6002fe">ToolDescription</a>
</li>
<li>appendChromatogram()
: <a class="el" href="classOpenMS_1_1Interfaces_1_1IChromatogramsWriter.html#a23e7a268a2180b4d76f6f017dce46150">IChromatogramsWriter</a>
</li>
<li>appendSpectrum()
: <a class="el" href="classOpenMS_1_1Interfaces_1_1ISpectraWriter.html#ae51e4a0613b89735f4147c6b8373fc0a">ISpectraWriter</a>
</li>
<li>APPI
: <a class="el" href="classOpenMS_1_1IonSource.html#aa1f350d16338b42e2384db2e5aa4a3f4a5c60e3178bb8db38b3970316b0c5aae8">IonSource</a>
</li>
<li>apply()
: <a class="el" href="classOpenMS_1_1FalseDiscoveryRate.html#ab983877be843bfba1bd60b89b82b0369">FalseDiscoveryRate</a>
, <a class="el" href="classOpenMS_1_1TICFilter.html#adf638fa1a8dfe5de7d7fa39735e3d7fd">TICFilter</a>
, <a class="el" href="classOpenMS_1_1IsotopeDiffFilter.html#adf638fa1a8dfe5de7d7fa39735e3d7fd">IsotopeDiffFilter</a>
, <a class="el" href="classOpenMS_1_1PeakMarker.html#a304a2ce81be81bb0ebbe9632922c6bd4">PeakMarker</a>
, <a class="el" href="classOpenMS_1_1NeutralLossDiffFilter.html#adf638fa1a8dfe5de7d7fa39735e3d7fd">NeutralLossDiffFilter</a>
, <a class="el" href="classOpenMS_1_1FilterFunctor.html#a0d67c27ffb3b69222c17c8b3744ae645">FilterFunctor</a>
, <a class="el" href="classOpenMS_1_1GoodDiffFilter.html#adf638fa1a8dfe5de7d7fa39735e3d7fd">GoodDiffFilter</a>
, <a class="el" href="classOpenMS_1_1ComplementMarker.html#aa7760cc261a8f6a8ad94d9adc17d7067">ComplementMarker</a>
, <a class="el" href="classOpenMS_1_1TransformationDescription.html#aa280f8d4730c216c58a3edd091b99767">TransformationDescription</a>
, <a class="el" href="classOpenMS_1_1FalseDiscoveryRate.html#a3053e14a158f743ced2b792b6d9ab640">FalseDiscoveryRate</a>
, <a class="el" href="classOpenMS_1_1DeNovoPostScoring.html#afcecb1a43e5509738e3b373f933fb00e">DeNovoPostScoring</a>
, <a class="el" href="classOpenMS_1_1ConsensusID.html#a6b649f6bc70f3ef02d434996dd003e4a">ConsensusID</a>
, <a class="el" href="classOpenMS_1_1FalseDiscoveryRate.html#a84e469180436c079bf54addf9a619da3">FalseDiscoveryRate</a>
, <a class="el" href="classOpenMS_1_1PILISCrossValidation.html#a53ffde794d5404f936cbadbb7f71e7cf">PILISCrossValidation</a>
, <a class="el" href="classOpenMS_1_1DeNovoPostScoring.html#a17a7343047b24a28ab07ad21d0c38e7e">DeNovoPostScoring</a>
, <a class="el" href="classOpenMS_1_1FalseDiscoveryRate.html#ade46bf920d0b8471b917a6cea2bed3e6">FalseDiscoveryRate</a>
, <a class="el" href="classOpenMS_1_1IDDecoyProbability.html#ae3e0f2c179b08d9682573d8653c73637">IDDecoyProbability</a>
, <a class="el" href="classOpenMS_1_1ComplementFilter.html#adf638fa1a8dfe5de7d7fa39735e3d7fd">ComplementFilter</a>
, <a class="el" href="classOpenMS_1_1IntensityBalanceFilter.html#adf638fa1a8dfe5de7d7fa39735e3d7fd">IntensityBalanceFilter</a>
, <a class="el" href="classOpenMS_1_1IsotopeMarker.html#a6253a8d1984cc8d5a8eb1ebb66d67e43">IsotopeMarker</a>
, <a class="el" href="classOpenMS_1_1NeutralLossMarker.html#a6253a8d1984cc8d5a8eb1ebb66d67e43">NeutralLossMarker</a>
</li>
<li>apply_()
: <a class="el" href="classOpenMS_1_1IDDecoyProbability.html#aa486f5a5b9b7bcc22d0c570aff22c65c">IDDecoyProbability</a>
</li>
<li>applyDesign2Quantifier()
: <a class="el" href="classOpenMS_1_1QuantitativeExperimentalDesign.html#aaa5d5d863f8884124e0da54be434ef8f">QuantitativeExperimentalDesign</a>
</li>
<li>applyDesign2Resolver()
: <a class="el" href="classOpenMS_1_1QuantitativeExperimentalDesign.html#a0dd74ee63729788518db2eb92d03a3fe">QuantitativeExperimentalDesign</a>
</li>
<li>applyDilation_()
: <a class="el" href="classOpenMS_1_1MorphologicalFilter.html#a1a7fb4875ce65963e8f02b8edcb17e50">MorphologicalFilter</a>
</li>
<li>applyDilationSimple_()
: <a class="el" href="classOpenMS_1_1MorphologicalFilter.html#a87208f2bec605e3978ebce245afdaf1d">MorphologicalFilter</a>
</li>
<li>applyErosion_()
: <a class="el" href="classOpenMS_1_1MorphologicalFilter.html#a99b90fb3c757fc17a43f16f301140d57">MorphologicalFilter</a>
</li>
<li>applyErosionSimple_()
: <a class="el" href="classOpenMS_1_1MorphologicalFilter.html#ad68e8dfc0cc0e0eb3a8ea5ee03c8a5ed">MorphologicalFilter</a>
</li>
<li>applyLabelToProteinHit_()
: <a class="el" href="classOpenMS_1_1SILACLabeler.html#a29518b8aedc40c3f65f6931678f4280f">SILACLabeler</a>
</li>
<li>applyLogTransformation()
: <a class="el" href="classOpenMS_1_1Math_1_1Histogram.html#a225736fa6f5ee6ca39411e73f917e00e">Histogram< ValueType, BinSizeType ></a>
</li>
<li>applyMemberFunction()
: <a class="el" href="classOpenMS_1_1ConsensusMap.html#a2ba4cf095974c86863027d78210dc2fa">ConsensusMap</a>
, <a class="el" href="classOpenMS_1_1Feature.html#a2ba4cf095974c86863027d78210dc2fa">Feature</a>
, <a class="el" href="classOpenMS_1_1FeatureMap.html#a2ba4cf095974c86863027d78210dc2fa">FeatureMap< FeatureT ></a>
, <a class="el" href="classOpenMS_1_1Feature.html#ac4a24ec632c6289210b0db06d7f2af9f">Feature</a>
, <a class="el" href="classOpenMS_1_1ConsensusMap.html#ac4a24ec632c6289210b0db06d7f2af9f">ConsensusMap</a>
</li>
<li>applyToBaseFeature_()
: <a class="el" href="classOpenMS_1_1MapAlignmentTransformer.html#a0f5e80ace5538c9f68e907a68414a281">MapAlignmentTransformer</a>
</li>
<li>applyToConsensusFeature_()
: <a class="el" href="classOpenMS_1_1MapAlignmentTransformer.html#a1e173f739897a1e8854e8204089b3bee">MapAlignmentTransformer</a>
</li>
<li>applyTOFConversion_()
: <a class="el" href="classOpenMS_1_1TOFCalibration.html#a1ff54836126ed2745e23abe256ba16ed">TOFCalibration</a>
</li>
<li>applyToFeature_()
: <a class="el" href="classOpenMS_1_1MapAlignmentTransformer.html#ae4ad6cd3336682097c3a245c3a3a2975">MapAlignmentTransformer</a>
</li>
<li>applyTransformation_()
: <a class="el" href="classOpenMS_1_1InternalCalibration.html#a143d5d335c0bd74c729fd0a3742c5577">InternalCalibration</a>
</li>
<li>arch
: <a class="el" href="structOpenMS_1_1Internal_1_1OpenMSOSInfo.html#a4521f885797e10482e45dc30d6b576f7">OpenMSOSInfo</a>
</li>
<li>area
: <a class="el" href="structOpenMS_1_1PeakShape.html#ab711e0c5eaae04e02713b6cbd5a6a954">PeakShape</a>
</li>
<li>areaBegin()
: <a class="el" href="classOpenMS_1_1MSExperiment.html#a878abca09cb3f6810e634b72b99007eb">MSExperiment< PeakT, ChromatogramPeakT ></a>
</li>
<li>areaBeginConst()
: <a class="el" href="classOpenMS_1_1MSExperiment.html#aa23ed32415e6667bd2737377c24c16fb">MSExperiment< PeakT, ChromatogramPeakT ></a>
</li>
<li>areaEnd()
: <a class="el" href="classOpenMS_1_1MSExperiment.html#afb936fe46d35a9d29e36552a68c1ef2a">MSExperiment< PeakT, ChromatogramPeakT ></a>
</li>
<li>areaEndConst()
: <a class="el" href="classOpenMS_1_1MSExperiment.html#a5f9d4faff212e67330d60f958f0ce4bc">MSExperiment< PeakT, ChromatogramPeakT ></a>
</li>
<li>AreaIterator()
: <a class="el" href="classOpenMS_1_1Internal_1_1AreaIterator.html#ab879a9fb1901fe73383ba7effe49ad4c">AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT ></a>
, <a class="el" href="classOpenMS_1_1MSExperiment.html#a9aa8e2a39a1767b456c47000d2ae1a56">MSExperiment< PeakT, ChromatogramPeakT ></a>
, <a class="el" href="classOpenMS_1_1Internal_1_1AreaIterator.html#a6bdd691624377f9846f352f72dd0814d">AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT ></a>
</li>
<li>AreaType
: <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#a167f63a2d1a578a83eb07c33a25a8f43">SpectrumCanvas</a>
, <a class="el" href="classOpenMS_1_1MSExperiment.html#a167f63a2d1a578a83eb07c33a25a8f43">MSExperiment< PeakT, ChromatogramPeakT ></a>
</li>
<li>arg_map_
: <a class="el" href="classOpenMS_1_1ToolsDialog.html#a2573994875c4bab84f4cb040d71eb9b6">ToolsDialog</a>
</li>
<li>arg_param_
: <a class="el" href="classOpenMS_1_1ToolsDialog.html#a00a993b929314ca1d8fd0098eb5ba8c9">ToolsDialog</a>
, <a class="el" href="classOpenMS_1_1TOPPASToolConfigDialog.html#a00a993b929314ca1d8fd0098eb5ba8c9">TOPPASToolConfigDialog</a>
</li>
<li>args
: <a class="el" href="structOpenMS_1_1TOPPASScene_1_1TOPPProcess.html#ab8db4e98185d649f82f10967744b52fd">TOPPASScene::TOPPProcess</a>
</li>
<li>argument
: <a class="el" href="structOpenMS_1_1ParameterInformation.html#a239ec990e6e30f8c9e084bd8328b9c8f">ParameterInformation</a>
</li>
<li>argument_type
: <a class="el" href="classOpenSwath_1_1mean__and__stddev.html#a7ff1434ec8954e1be2b97273bc2dcc23">mean_and_stddev</a>
</li>
<li>ARRAYDETECTOR
: <a class="el" href="classOpenMS_1_1IonDetector.html#a1d1cfd8ffb84e947f82999c682b666a7a04a49f0fe9b8b9be26628d0bd8ee0882">IonDetector</a>
</li>
<li>ARTIFACT
: <a class="el" href="classOpenMS_1_1ResidueModification.html#a2625255b968a6706fbd74639f92551bea6cea9449bfddd11b89800df94a18c39a">ResidueModification</a>
</li>
<li>asBool_()
: <a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a5dc26987442a8a81af7bbd43e2e48f4a">XMLHandler</a>
</li>
<li>AScore
: <a class="el" href="structOpenMS_1_1ProbablePhosphoSites.html#a7d3281a8722cd62c2c3dea225ba30b5d">ProbablePhosphoSites</a>
, <a class="el" href="classOpenMS_1_1AScore.html#a25ccd4609deefc4650cd703721d8c095">AScore</a>
</li>
<li>asDateTime_()
: <a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#ae9988608535348608067112395e56562">XMLHandler</a>
</li>
<li>asDouble_()
: <a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a48e8be8cff3d25b265c4f3b6a1c446b0">XMLHandler</a>
</li>
<li>asFloat_()
: <a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#aa6a2e65ba3dc9581e4cb5a719ddace92">XMLHandler</a>
</li>
<li>ASI
: <a class="el" href="classOpenMS_1_1IonSource.html#aa1f350d16338b42e2384db2e5aa4a3f4ad534995d8fa8bd372ad247e16ff746fa">IonSource</a>
</li>
<li>asInt_()
: <a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#acce0b8fbe7a5a90972407cc4ec2ae742">XMLHandler</a>
</li>
<li>askForOutputDir()
: <a class="el" href="classOpenMS_1_1TOPPASScene.html#a0547bd4b127d0df3cd9c9a8ee69e0716">TOPPASScene</a>
</li>
<li>asMutable()
: <a class="el" href="classOpenMS_1_1FeatureHandle.html#acc3a640affdad237684c69d735ec186f">FeatureHandle</a>
</li>
<li>Assay()
: <a class="el" href="structOpenMS_1_1MSQuantifications_1_1Assay.html#ac135562f64eaa15b86eced0d832c6111">MSQuantifications::Assay</a>
</li>
<li>assays_
: <a class="el" href="classOpenMS_1_1MSQuantifications.html#ad4aeeb3163788d391e4fc7fff678af7b">MSQuantifications</a>
</li>
<li>assembleInclusionListForProteinBasedLP_()
: <a class="el" href="classOpenMS_1_1PSLPFormulation.html#ae86c2a4f209949045780102c2476cede">PSLPFormulation</a>
</li>
<li>assign()
: <a class="el" href="classOpenMS_1_1ConstRefVector.html#ab721c41745ab19df68056b9687520764">ConstRefVector< ContainerT ></a>
, <a class="el" href="classOpenMS_1_1Internal_1_1DIntervalBase.html#a76f9ed6e5bf28216e1330c18288b5325">DIntervalBase< D ></a>
</li>
<li>assignRanks()
: <a class="el" href="classOpenMS_1_1ProteinIdentification.html#aa79958ac1cf2cb1fc4b9ae1cd766cfcb">ProteinIdentification</a>
, <a class="el" href="classOpenMS_1_1PeptideIdentification.html#aa79958ac1cf2cb1fc4b9ae1cd766cfcb">PeptideIdentification</a>
</li>
<li>assignUIDs()
: <a class="el" href="classOpenMS_1_1MSQuantifications.html#ae509bd3d7e3f1cd04573f77921c4d7ec">MSQuantifications</a>
</li>
<li>associateMS2FeatureToMS1Feature()
: <a class="el" href="classOpenMS_1_1FTPeakDetectController.html#a1816a94cbc800d65bd3c993af124dc8d">FTPeakDetectController</a>
</li>
<li>asUInt_()
: <a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a8cec7757132342e4d52771f09113378b">XMLHandler</a>
</li>
<li>AsymmetricStatistics()
: <a class="el" href="classOpenMS_1_1Math_1_1AsymmetricStatistics.html#a47373d25709fc4fce705d7f148300aea">AsymmetricStatistics< Real ></a>
</li>
<li>at()
: <a class="el" href="classOpenMS_1_1SparseVector.html#a46fcfec0fdf2b70cca5d5cbc04af58e3">SparseVector< Value ></a>
</li>
<li>at_
: <a class="el" href="classOpenMS_1_1QcMLFile.html#a5fc72c07dfd906a302b5e664e464039e">QcMLFile</a>
</li>
<li>atomic_number_
: <a class="el" href="classOpenMS_1_1Element.html#a77152768bc50687957ec74ff0b12c753">Element</a>
</li>
<li>atomic_numbers_
: <a class="el" href="classOpenMS_1_1ElementDB.html#a1570c01f978aa82756465f6a6d8343f8">ElementDB</a>
</li>
<li>ats_
: <a class="el" href="classOpenMS_1_1QcMLFile.html#a166f8af28cc54fc888961c3ead656eb2">QcMLFile</a>
</li>
<li>attachLayer()
: <a class="el" href="classOpenMS_1_1SpectraIdentificationViewWidget.html#a7b2b45a9dd169af6940bc6337bb0836e">SpectraIdentificationViewWidget</a>
</li>
<li>Attachment()
: <a class="el" href="structOpenMS_1_1QcMLFile_1_1Attachment.html#aa9299520ea4c70bcb577a9eab2fd4973">QcMLFile::Attachment</a>
</li>
<li>attributeAsDouble_()
: <a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a8b86d61a994bea8fc963fb5ba58b53cc">XMLHandler</a>
</li>
<li>attributeAsDoubleList_()
: <a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a54f3fb485e059c3cb16afc2235635fc0">XMLHandler</a>
</li>
<li>attributeAsInt_()
: <a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a72fc926d019cece725e2acca29ba6bd7">XMLHandler</a>
</li>
<li>attributeAsIntList_()
: <a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a5dc4ddd6685eb948019e1537d6fe9034">XMLHandler</a>
</li>
<li>attributeAsString_()
: <a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#ad63dfd11e1161067d1634f7b92bee573">XMLHandler</a>
</li>
<li>attributeAsStringList_()
: <a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#aa4b445d152e82df2f8c8254d16f6215b">XMLHandler</a>
</li>
<li>AUC()
: <a class="el" href="classOpenMS_1_1Math_1_1ROCCurve.html#a24d6d1f4ec19f75095aca7db96a318db">ROCCurve</a>
</li>
<li>AUI
: <a class="el" href="classOpenMS_1_1IonSource.html#aa1f350d16338b42e2384db2e5aa4a3f4a3306da16fbcb1fde30d4ec351db99285">IonSource</a>
</li>
<li>auto_max_percentile_
: <a class="el" href="classOpenMS_1_1SignalToNoiseEstimatorMeanIterative.html#a93a62d8b5171f8c4ca510b43665e86f0">SignalToNoiseEstimatorMeanIterative< Container ></a>
, <a class="el" href="classOpenMS_1_1SignalToNoiseEstimatorMedian.html#a93a62d8b5171f8c4ca510b43665e86f0">SignalToNoiseEstimatorMedian< Container ></a>
</li>
<li>auto_max_stdev_Factor_
: <a class="el" href="classOpenMS_1_1SignalToNoiseEstimatorMeanIterative.html#afcafb04e216a205cef141a1b185607ec">SignalToNoiseEstimatorMeanIterative< Container ></a>
, <a class="el" href="classOpenMS_1_1SignalToNoiseEstimatorMedian.html#afcafb04e216a205cef141a1b185607ec">SignalToNoiseEstimatorMedian< Container ></a>
</li>
<li>auto_mode_
: <a class="el" href="classOpenMS_1_1SignalToNoiseEstimatorMedian.html#adda1b231ff2babb10fe7517ba5e9b874">SignalToNoiseEstimatorMedian< Container ></a>
, <a class="el" href="classOpenMS_1_1SignalToNoiseEstimatorMeanIterative.html#adda1b231ff2babb10fe7517ba5e9b874">SignalToNoiseEstimatorMeanIterative< Container ></a>
</li>
<li>AUTOMAXBYPERCENT
: <a class="el" href="classOpenMS_1_1SignalToNoiseEstimatorMeanIterative.html#ae464a259f0de0942da14360ec6e8014aaea0ca95f58a3261ccaa8a775dcc8dde9">SignalToNoiseEstimatorMeanIterative< Container ></a>
, <a class="el" href="classOpenMS_1_1SignalToNoiseEstimatorMedian.html#ae464a259f0de0942da14360ec6e8014aaea0ca95f58a3261ccaa8a775dcc8dde9">SignalToNoiseEstimatorMedian< Container ></a>
</li>
<li>AUTOMAXBYSTDEV
: <a class="el" href="classOpenMS_1_1SignalToNoiseEstimatorMedian.html#ae464a259f0de0942da14360ec6e8014aa8961d1f3691a651569efcbd6f60819bc">SignalToNoiseEstimatorMedian< Container ></a>
, <a class="el" href="classOpenMS_1_1SignalToNoiseEstimatorMeanIterative.html#ae464a259f0de0942da14360ec6e8014aa8961d1f3691a651569efcbd6f60819bc">SignalToNoiseEstimatorMeanIterative< Container ></a>
</li>
<li>autoUpdateProjections()
: <a class="el" href="classOpenMS_1_1Spectrum2DWidget.html#a07be16fbf4b70b226457b266e906cfc6">Spectrum2DWidget</a>
</li>
<li>av_MZ_spacing_
: <a class="el" href="classOpenMS_1_1IsotopeWaveletTransform.html#a2114c27baa5da2ed87a4a246ded068f2">IsotopeWaveletTransform< PeakType ></a>
</li>
<li>AVERAGE
: <a class="el" href="classOpenMS_1_1ProteinIdentification.html#a5431b65220b7ad71b5e8768876ee3e53ab6f2220659ddcb84a0622d4aa4e0b112">ProteinIdentification</a>
, <a class="el" href="classOpenMS_1_1XTandemInfile.html#acb24b846f44e558e17a9f47674d2b406ab6f2220659ddcb84a0622d4aa4e0b112">XTandemInfile</a>
, <a class="el" href="classOpenMS_1_1WeightWrapper.html#aa0e0675e46f34052468f523f1c8aff2bab6f2220659ddcb84a0622d4aa4e0b112">WeightWrapper</a>
</li>
<li>average_()
: <a class="el" href="classOpenMS_1_1ConsensusID.html#a2bf744ef812266898863602b219b5565">ConsensusID</a>
</li>
<li>average_mass_
: <a class="el" href="classOpenMS_1_1ResidueModification.html#aa40e69e1dd7dc442b3802b40e51cd75d">ResidueModification</a>
</li>
<li>average_weight_
: <a class="el" href="classOpenMS_1_1Residue.html#afd819a65bf48b63f3adf16f282cf3e07">Residue</a>
, <a class="el" href="classOpenMS_1_1Element.html#afd819a65bf48b63f3adf16f282cf3e07">Element</a>
</li>
<li>averageCoefficients_()
: <a class="el" href="classOpenMS_1_1TOFCalibration.html#a46a578e262d60a045f33bb2bd3582d33">TOFCalibration</a>
</li>
<li>averageErrors_()
: <a class="el" href="classOpenMS_1_1TOFCalibration.html#a989c5a169bb636da965233f9ec58e881">TOFCalibration</a>
</li>
<li>AverageLinkage()
: <a class="el" href="classOpenMS_1_1AverageLinkage.html#a677e8896b8d9d757a6265674f44be6bc">AverageLinkage</a>
</li>
<li>averageneFilter_()
: <a class="el" href="classOpenMS_1_1SILACFilter.html#a158d9b7cc560362c6c50b253d9ba1763">SILACFilter</a>
</li>
<li>averagePopulationAberration()
: <a class="el" href="classOpenMS_1_1ClusterAnalyzer.html#a299d8214ddc27b9c1dfa59d7ac593ae4">ClusterAnalyzer</a>
</li>
<li>AveragePosition()
: <a class="el" href="classOpenMS_1_1Math_1_1AveragePosition.html#a493419011c810d664994610cc733988d">AveragePosition< D ></a>
</li>
<li>averageSilhouetteWidth()
: <a class="el" href="classOpenMS_1_1ClusterAnalyzer.html#a65875b284ab1d8b9c346998d5630ae47">ClusterAnalyzer</a>
</li>
<li>averagine_
: <a class="el" href="classOpenMS_1_1LmaIsotopeModel.html#ac4d5ee8dbfa1e4901411f1cc547469e6">LmaIsotopeModel</a>
, <a class="el" href="classOpenMS_1_1IsotopeModel.html#ac4d5ee8dbfa1e4901411f1cc547469e6">IsotopeModel</a>
, <a class="el" href="classOpenMS_1_1LmaIsotopeFitter1D.html#ac4d5ee8dbfa1e4901411f1cc547469e6">LmaIsotopeFitter1D</a>
, <a class="el" href="classOpenMS_1_1IsotopeWavelet.html#a380b0d41e35b1e02d54fcbfe664ceb70">IsotopeWavelet</a>
, <a class="el" href="classOpenMS_1_1ExtendedIsotopeModel.html#ac4d5ee8dbfa1e4901411f1cc547469e6">ExtendedIsotopeModel</a>
</li>
<li>AVERAGINE_NUM
: <a class="el" href="classOpenMS_1_1LmaIsotopeFitter1D.html#acf3b079b95d57ffe98d92e35bf97ed0ba3c78b75937f989e8fd84217eff9318ad">LmaIsotopeFitter1D</a>
, <a class="el" href="classOpenMS_1_1LmaIsotopeModel.html#acf3b079b95d57ffe98d92e35bf97ed0ba3c78b75937f989e8fd84217eff9318ad">LmaIsotopeModel</a>
, <a class="el" href="classOpenMS_1_1ExtendedIsotopeModel.html#acf3b079b95d57ffe98d92e35bf97ed0ba3c78b75937f989e8fd84217eff9318ad">ExtendedIsotopeModel</a>
, <a class="el" href="classOpenMS_1_1IsotopeModel.html#acf3b079b95d57ffe98d92e35bf97ed0ba3c78b75937f989e8fd84217eff9318ad">IsotopeModel</a>
</li>
<li>Averagines
: <a class="el" href="classOpenMS_1_1ExtendedIsotopeModel.html#acf3b079b95d57ffe98d92e35bf97ed0b">ExtendedIsotopeModel</a>
, <a class="el" href="classOpenMS_1_1LmaIsotopeFitter1D.html#acf3b079b95d57ffe98d92e35bf97ed0b">LmaIsotopeFitter1D</a>
, <a class="el" href="classOpenMS_1_1LmaIsotopeModel.html#acf3b079b95d57ffe98d92e35bf97ed0b">LmaIsotopeModel</a>
, <a class="el" href="classOpenMS_1_1IsotopeModel.html#acf3b079b95d57ffe98d92e35bf97ed0b">IsotopeModel</a>
</li>
<li>avg
: <a class="el" href="structOpenMS_1_1LayerStatisticsDialog_1_1MetaStatsValue__.html#a3d0a8a35de92e26e8c69c63fcf10408f">LayerStatisticsDialog::MetaStatsValue_</a>
</li>
<li>avg_charge_
: <a class="el" href="classOpenMS_1_1LayerStatisticsDialog.html#a75e3d0e1be969923a5e6811128c4ab52">LayerStatisticsDialog</a>
</li>
<li>avg_elements_
: <a class="el" href="classOpenMS_1_1LayerStatisticsDialog.html#a1a100e0c310f853bd8ae1883e1e62d81">LayerStatisticsDialog</a>
</li>
<li>avg_intensity_
: <a class="el" href="classOpenMS_1_1LayerStatisticsDialog.html#a3a06c3c9aa6edc2ba5b900d6865e2dde">LayerStatisticsDialog</a>
</li>
<li>avg_mass_delta
: <a class="el" href="structOpenMS_1_1TargetedExperimentHelper_1_1Peptide_1_1Modification.html#a36e96373c998fc068aabfa436c6ce8e4">Peptide::Modification</a>
</li>
<li>avg_quality_
: <a class="el" href="classOpenMS_1_1LayerStatisticsDialog.html#ac7bb9768061a7a71f2344fc93cdcd622">LayerStatisticsDialog</a>
</li>
<li>avge_mass_
: <a class="el" href="classOpenMS_1_1Internal_1_1UnimodXMLHandler.html#ae4858962fb438a49c3b40b2b7170e1f6">UnimodXMLHandler</a>
</li>
<li>axes_
: <a class="el" href="classOpenMS_1_1Spectrum3DOpenGLCanvas.html#a89a84c924a4fea1c3fff433ca12c257d">Spectrum3DOpenGLCanvas</a>
</li>
<li>axes_ticks_
: <a class="el" href="classOpenMS_1_1Spectrum3DOpenGLCanvas.html#a9bda6800a177efdbd5694ee84adc6385">Spectrum3DOpenGLCanvas</a>
</li>
<li>AXIALEJECTIONLINEARIONTRAP
: <a class="el" href="classOpenMS_1_1MassAnalyzer.html#a134230547dd6de10b20f6904d9422ec3ace4c2a8d1433baa487103cbcd83bbb01">MassAnalyzer</a>
</li>
<li>AxisPainter()
: <a class="el" href="classOpenMS_1_1AxisPainter.html#a74ee9e122594ddadd0c52347690b2d8a">AxisPainter</a>
</li>
<li>AxisTickCalculator()
: <a class="el" href="classOpenMS_1_1AxisTickCalculator.html#aba4d225fffd1556970c78cc7bcfcfe3a">AxisTickCalculator</a>
</li>
<li>AxisTickVector
: <a class="el" href="classOpenMS_1_1Spectrum3DOpenGLCanvas.html#afda06cde4eb9afcc3e29871aa55bd858">Spectrum3DOpenGLCanvas</a>
</li>
<li>AxisWidget()
: <a class="el" href="classOpenMS_1_1AxisWidget.html#ac71806dcdc90ea75b75da6dc55eda0d1">AxisWidget</a>
</li>
</ul>
</div><!-- contents -->
<HR style="height:1px; border:none; border-top:1px solid #c0c0c0;">
<TABLE width="100%" border="0">
<TR>
<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:20:58 using doxygen 1.8.5</font></TD>
</TR>
</TABLE>
</BODY>
</HTML>
|
