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|
<HTML>
<HEAD>
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<div class="contents">
<div class="textblock">Here is a list of all class members with links to the classes they belong to:</div>
<h3><a class="anchor" id="index_p"></a>- p -</h3><ul>
<li>p
: <a class="el" href="structOpenMS_1_1Math_1_1GammaDistributionFitter_1_1GammaDistributionFitResult.html#aace2d484b0e3651abd108f04803d316c">GammaDistributionFitter::GammaDistributionFitResult</a>
</li>
<li>P
: <a class="el" href="classOpenMS_1_1SVMWrapper.html#a7441ce49ab2547572d9203c1b22d72f7a82f05f38f6a17b117cdd2b83227912c6">SVMWrapper</a>
</li>
<li>p_
: <a class="el" href="classOpenMS_1_1TheoreticalSpectrumGenerator.html#accc164c98dd5132b97467b457db544dc">TheoreticalSpectrumGenerator</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1ToolDescriptionHandler.html#a8974de9c5e87ac16efbef97a6a78468a">ToolDescriptionHandler</a>
, <a class="el" href="classOpenMS_1_1PILISIdentification.html#accc164c98dd5132b97467b457db544dc">PILISIdentification</a>
</li>
<li>p_cleave
: <a class="el" href="structOpenMS_1_1EnzymaticDigestion_1_1CleavageModel.html#a182af08bc7528bc68c838242b7bacd37">EnzymaticDigestion::CleavageModel</a>
</li>
<li>p_miss
: <a class="el" href="structOpenMS_1_1EnzymaticDigestion_1_1CleavageModel.html#ac7342dc42ab0ef52cf04024d321e8199">EnzymaticDigestion::CleavageModel</a>
</li>
<li>P_PRECURSORS
: <a class="el" href="classOpenMS_1_1LayerData.html#aa705cf7e79a21c2352b00ffe20cd295fabde05ad32ec801963a96777027526030">LayerData</a>
</li>
<li>P_PROJECTIONS
: <a class="el" href="classOpenMS_1_1LayerData.html#aa705cf7e79a21c2352b00ffe20cd295fae6b764e8463265f1bb084e0ff3666224">LayerData</a>
</li>
<li>paint()
: <a class="el" href="classOpenMS_1_1TOPPASOutputFileListVertex.html#a3179e87c1fc5adfb20e6f176144fc571">TOPPASOutputFileListVertex</a>
, <a class="el" href="classOpenMS_1_1TOPPASToolVertex.html#a3179e87c1fc5adfb20e6f176144fc571">TOPPASToolVertex</a>
, <a class="el" href="classOpenMS_1_1TOPPASVertex.html#a499926abdd7e0002c60875cb3f6110fd">TOPPASVertex</a>
, <a class="el" href="classOpenMS_1_1AxisPainter.html#a6479dba98c854e3035de43b3220fbfe5">AxisPainter</a>
, <a class="el" href="classOpenMS_1_1AxisWidget.html#a5a51e083ffa57a19a9139cfb9b7f2117">AxisWidget</a>
, <a class="el" href="classOpenMS_1_1Spectrum1DCanvas.html#a99c43fe0ae3945b1382d89a025b23fc6">Spectrum1DCanvas</a>
, <a class="el" href="classOpenMS_1_1TOPPASEdge.html#ac7e6c577486dbb0f61b2bf88f01d8ff0">TOPPASEdge</a>
, <a class="el" href="classOpenMS_1_1TOPPASInputFileListVertex.html#a3179e87c1fc5adfb20e6f176144fc571">TOPPASInputFileListVertex</a>
, <a class="el" href="classOpenMS_1_1TOPPASMergerVertex.html#a3179e87c1fc5adfb20e6f176144fc571">TOPPASMergerVertex</a>
</li>
<li>paintAllIntensities_()
: <a class="el" href="classOpenMS_1_1Spectrum2DCanvas.html#a6a052a36bdd8a5d2cd0f1f13ba962fb1">Spectrum2DCanvas</a>
</li>
<li>paintConsensusElement_()
: <a class="el" href="classOpenMS_1_1Spectrum2DCanvas.html#a771235efa56466c5dc892e0ff2e97e4d">Spectrum2DCanvas</a>
</li>
<li>paintConsensusElements_()
: <a class="el" href="classOpenMS_1_1Spectrum2DCanvas.html#ad3249e8db1bc980934d39cf47d2d0741">Spectrum2DCanvas</a>
</li>
<li>paintConvexHulls_()
: <a class="el" href="classOpenMS_1_1Spectrum2DCanvas.html#a814b5c55e21b1e6e8f64f122ea92cc4a">Spectrum2DCanvas</a>
</li>
<li>paintDots_()
: <a class="el" href="classOpenMS_1_1Spectrum2DCanvas.html#a787c06c04da078bf2e7680fac350f7ff">Spectrum2DCanvas</a>
</li>
<li>paintEvent()
: <a class="el" href="classOpenMS_1_1AxisWidget.html#ad06d035e601c42cc2a3b9d1229c73d36">AxisWidget</a>
, <a class="el" href="classOpenMS_1_1ColorSelector.html#a4c44746ee6abcfabac1581977a1b5c02">ColorSelector</a>
, <a class="el" href="classOpenMS_1_1HistogramWidget.html#ad06d035e601c42cc2a3b9d1229c73d36">HistogramWidget</a>
, <a class="el" href="classOpenMS_1_1MultiGradientSelector.html#a4c44746ee6abcfabac1581977a1b5c02">MultiGradientSelector</a>
, <a class="el" href="classOpenMS_1_1Spectrum1DCanvas.html#a4c44746ee6abcfabac1581977a1b5c02">Spectrum1DCanvas</a>
, <a class="el" href="classOpenMS_1_1Spectrum2DCanvas.html#a4c44746ee6abcfabac1581977a1b5c02">Spectrum2DCanvas</a>
</li>
<li>paintFeatureConvexHulls_()
: <a class="el" href="classOpenMS_1_1Spectrum2DCanvas.html#ad51209acf7c7fc67eabb7d38b225c495">Spectrum2DCanvas</a>
</li>
<li>paintFeatureData_()
: <a class="el" href="classOpenMS_1_1Spectrum2DCanvas.html#a5f578dc8c1d18dfa18682017c360b7b5">Spectrum2DCanvas</a>
</li>
<li>paintGL()
: <a class="el" href="classOpenMS_1_1Spectrum3DOpenGLCanvas.html#ac5cbfafb28ef4c0474ae96437294f547">Spectrum3DOpenGLCanvas</a>
</li>
<li>paintGridLines_()
: <a class="el" href="classOpenMS_1_1Spectrum1DCanvas.html#a60846f7c15d87b490969e8b457e24bc0">Spectrum1DCanvas</a>
, <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#a60846f7c15d87b490969e8b457e24bc0">SpectrumCanvas</a>
</li>
<li>paintIcon_()
: <a class="el" href="classOpenMS_1_1Spectrum2DCanvas.html#abd3a97e81434f0213acaf8e16ae21567">Spectrum2DCanvas</a>
</li>
<li>paintIdentifications_()
: <a class="el" href="classOpenMS_1_1Spectrum2DCanvas.html#a4919b2b4d6f913b86d1c34ac7bfe925f">Spectrum2DCanvas</a>
</li>
<li>paintMaximumIntensities_()
: <a class="el" href="classOpenMS_1_1Spectrum2DCanvas.html#a56e147784fc8fb505634fb06530d6a7f">Spectrum2DCanvas</a>
</li>
<li>paintPrecursorPeaks_()
: <a class="el" href="classOpenMS_1_1Spectrum2DCanvas.html#a1efa2f726a48a01d1f1a204cce5f3712">Spectrum2DCanvas</a>
</li>
<li>paintTraceConvexHulls_()
: <a class="el" href="classOpenMS_1_1Spectrum2DCanvas.html#ad7a8995eade1d988170e266d25bb20d7">Spectrum2DCanvas</a>
</li>
<li>pair_min_quality_
: <a class="el" href="classOpenMS_1_1SimplePairFinder.html#a5a7afe0dfbb83327be42c67b1d1a2d43">SimplePairFinder</a>
</li>
<li>PairDistances
: <a class="el" href="classOpenMS_1_1QTClusterFinder.html#a2822354fde139807a8cb13ca65f70944">QTClusterFinder</a>
</li>
<li>pairfinder_
: <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithmPoseClustering.html#afa65b41aa65348bd4396b9bef84e7ac7">MapAlignmentAlgorithmPoseClustering</a>
</li>
<li>pairfinder_input_
: <a class="el" href="classOpenMS_1_1FeatureGroupingAlgorithmUnlabeled.html#a94f120ab601f41c978d296769610a333">FeatureGroupingAlgorithmUnlabeled</a>
</li>
<li>PairsIndex
: <a class="el" href="classOpenMS_1_1ILPDCWrapper.html#ae89f31495441c3c3d7ff8812de472683">ILPDCWrapper</a>
</li>
<li>PairsType
: <a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#aea7cecfe175ce2482ff9bf1a3de2c52c">FeatureDeconvolution</a>
, <a class="el" href="classOpenMS_1_1ILPDCWrapper.html#a1fa855763e3c516396c47cd9f995cfe7">ILPDCWrapper</a>
</li>
<li>Param()
: <a class="el" href="classOpenMS_1_1Param.html#a4b0a9e9ae087029f3e5cb80a44c9371c">Param</a>
</li>
<li>param
: <a class="el" href="structOpenMS_1_1Internal_1_1ToolExternalDetails.html#ad754716e5ea05dfffa1e048774643960">ToolExternalDetails</a>
, <a class="el" href="classOpenMS_1_1TOPPViewBase.html#ad754716e5ea05dfffa1e048774643960">TOPPViewBase</a>
, <a class="el" href="classOpenMS_1_1LayerData.html#ad754716e5ea05dfffa1e048774643960">LayerData</a>
</li>
<li>param_
: <a class="el" href="classOpenMS_1_1LocalLinearMap.html#a114b8fab16086dbe2d9b8a607ae62008">LocalLinearMap</a>
, <a class="el" href="classOpenMS_1_1SVMWrapper.html#ae4edfc8c63d960179ac9f0cc9f6244bf">SVMWrapper</a>
, <a class="el" href="classOpenMS_1_1TOPPBase.html#a28c73e623c63a4fe3bfceb1ae8274f39">TOPPBase</a>
, <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a28c73e623c63a4fe3bfceb1ae8274f39">DefaultParamHandler</a>
, <a class="el" href="classOpenMS_1_1FeatureXMLFile.html#a28c73e623c63a4fe3bfceb1ae8274f39">FeatureXMLFile</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1ParamXMLHandler.html#aa09ef52e11ba0a32812639f92136d6a9">ParamXMLHandler</a>
, <a class="el" href="classOpenMS_1_1IdXMLFile.html#a54a8aa356cf6f85628160c83c662bbf6">IdXMLFile</a>
, <a class="el" href="classOpenMS_1_1INIFileEditorWindow.html#a28c73e623c63a4fe3bfceb1ae8274f39">INIFileEditorWindow</a>
, <a class="el" href="classOpenMS_1_1TOPPASToolConfigDialog.html#aa45e3b07f20d972fdf1557af5b5414cb">TOPPASToolConfigDialog</a>
, <a class="el" href="classOpenMS_1_1ParamEditor.html#aa45e3b07f20d972fdf1557af5b5414cb">ParamEditor</a>
, <a class="el" href="classOpenMS_1_1TOPPASToolVertex.html#a28c73e623c63a4fe3bfceb1ae8274f39">TOPPASToolVertex</a>
</li>
<li>param_cmdline_
: <a class="el" href="classOpenMS_1_1TOPPBase.html#aa3c6eb7ecbdfa635c6bfcc16beb44abe">TOPPBase</a>
</li>
<li>param_common_
: <a class="el" href="classOpenMS_1_1TOPPBase.html#afa913f3c5495a38dd42c7f329d94753f">TOPPBase</a>
</li>
<li>param_common_tool_
: <a class="el" href="classOpenMS_1_1TOPPBase.html#a8d4d920a1b6f34b180feaa33a4a3b204">TOPPBase</a>
</li>
<li>param_groups_
: <a class="el" href="classOpenMS_1_1Internal_1_1MzMLValidator.html#a725a3368e33701b222963a0aac1f3e3b">MzMLValidator</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1MzQuantMLValidator.html#a725a3368e33701b222963a0aac1f3e3b">MzQuantMLValidator</a>
</li>
<li>param_inifile_
: <a class="el" href="classOpenMS_1_1TOPPBase.html#a055bff6c3f219da094965760ab650fb6">TOPPBase</a>
</li>
<li>param_instance_
: <a class="el" href="classOpenMS_1_1TOPPBase.html#a4fa1b8a5454d97f09daeaebca7c91f2e">TOPPBase</a>
</li>
<li>PARAM_NAME
: <a class="el" href="classOpenMS_1_1LogConfigHandler.html#aa048745e9a60bd1f72122826f81c43ee">LogConfigHandler</a>
</li>
<li>param_name
: <a class="el" href="structOpenMS_1_1TOPPASToolVertex_1_1IOInfo.html#a2aaa1e5e4ead883b7c2fc505c3853133">TOPPASToolVertex::IOInfo</a>
</li>
<li>ParamEditor()
: <a class="el" href="classOpenMS_1_1ParamEditor.html#afa019f5ce03cd63e01f5015e1dbdaf56">ParamEditor</a>
</li>
<li>ParamEditorDelegate()
: <a class="el" href="classOpenMS_1_1Internal_1_1ParamEditorDelegate.html#a2284887a8793bf8b7d76f5cbffa36953">ParamEditorDelegate</a>
</li>
<li>ParamEntry()
: <a class="el" href="structOpenMS_1_1Param_1_1ParamEntry.html#adfe0d8107ffdf1594b6722a80599fdaa">Param::ParamEntry</a>
</li>
<li>paramEntryToParameterInformation_()
: <a class="el" href="classOpenMS_1_1TOPPBase.html#aaab74d8a8bd1c289715d37dc53d37e45">TOPPBase</a>
</li>
<li>parameterChanged()
: <a class="el" href="classOpenMS_1_1TOPPASVertex.html#a860c9dbca48752f0606dead697da6e46">TOPPASVertex</a>
</li>
<li>ParameterInformation()
: <a class="el" href="structOpenMS_1_1ParameterInformation.html#a44dda98403226cffa149b1d4f1102357">ParameterInformation</a>
</li>
<li>parameters_
: <a class="el" href="classOpenMS_1_1TOPPBase.html#a3935296a9fde5712d711d2fc1100435f">TOPPBase</a>
, <a class="el" href="classOpenMS_1_1IdXMLFile.html#ac2a2af791c1756427569945879c10ef6">IdXMLFile</a>
, <a class="el" href="classOpenMS_1_1MzTabParameterList.html#aaf9124d3fce4518b10464167e7fc6d32">MzTabParameterList</a>
, <a class="el" href="classOpenMS_1_1ModelDescription.html#ac273d200661cfd7d2d858af1f5044b80">ModelDescription< D ></a>
</li>
<li>ParameterTypes
: <a class="el" href="structOpenMS_1_1ParameterInformation.html#ad88a0c5c8eeb7dbff8fd81dc6d9c9d89">ParameterInformation</a>
</li>
<li>ParamGroupList
: <a class="el" href="classOpenMS_1_1MSQuantifications.html#ae3c281ebba18ddcdc2ae5aea227ee4e9">MSQuantifications</a>
</li>
<li>ParamIterator()
: <a class="el" href="classOpenMS_1_1Param_1_1ParamIterator.html#af11b39ec569882356f55a8c50533c6e6">Param::ParamIterator</a>
</li>
<li>ParamNode()
: <a class="el" href="structOpenMS_1_1Param_1_1ParamNode.html#ae6b77f49371a929c70d5f6731c2794c1">Param::ParamNode</a>
</li>
<li>params_
: <a class="el" href="classOpenMS_1_1TransformationModel.html#a20793411214daa54c7571bf9fccd5ccf">TransformationModel</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1AcqusHandler.html#aff6823a2224876dddb93cf80e7527df4">AcqusHandler</a>
, <a class="el" href="classOpenMS_1_1PepXMLFile.html#ac3d586e03dbf806c042823615bb112d7">PepXMLFile</a>
, <a class="el" href="classOpenMS_1_1TransformationXMLFile.html#a20793411214daa54c7571bf9fccd5ccf">TransformationXMLFile</a>
</li>
<li>params_intensity_
: <a class="el" href="classOpenMS_1_1FeatureDistance.html#a8f146b0e2104c805a7a8ebf75e9def04">FeatureDistance</a>
</li>
<li>params_mz_
: <a class="el" href="classOpenMS_1_1FeatureDistance.html#a9948c1e2a2d6bd3dd35744cc96ad255b">FeatureDistance</a>
</li>
<li>params_rt_
: <a class="el" href="classOpenMS_1_1FeatureDistance.html#a3c454c044130ed7f7e5fe6c979d952af">FeatureDistance</a>
</li>
<li>paramToParameterInformation_()
: <a class="el" href="classOpenMS_1_1TOPPBase.html#a60bdece826d183bdadb31c85126c3431">TOPPBase</a>
</li>
<li>ParamTree()
: <a class="el" href="classOpenMS_1_1Internal_1_1ParamTree.html#a12d8c3de6ae0531dbe3f6d75f011fdcc">ParamTree</a>
</li>
<li>ParamXMLFile()
: <a class="el" href="classOpenMS_1_1ParamXMLFile.html#a8a335ca795228b8f91cfa1822e68bac6">ParamXMLFile</a>
</li>
<li>ParamXMLHandler()
: <a class="el" href="classOpenMS_1_1Internal_1_1ParamXMLHandler.html#a4ec1927b1174d5dd9574f800469b393b">ParamXMLHandler</a>
</li>
<li>PARENT
: <a class="el" href="classOpenMS_1_1CompNovoIonScoringBase.html#af7e67702d51d0eff4c3db8ea8763a59fa283df3974c567b21c067198a24cd78e6">CompNovoIonScoringBase</a>
</li>
<li>parent_
: <a class="el" href="classOpenMS_1_1TOPPASInputFileDialog.html#a972dae7dd21a33614f722171eacc74b3">TOPPASInputFileDialog</a>
</li>
<li>ParentPeakMower()
: <a class="el" href="classOpenMS_1_1ParentPeakMower.html#a501b46dad74e0d7ba34c0a35b57211a3">ParentPeakMower</a>
</li>
<li>parents
: <a class="el" href="structOpenMS_1_1ControlledVocabulary_1_1CVTerm.html#a27a6b607046872caa389a85926ab1f8f">ControlledVocabulary::CVTerm</a>
</li>
<li>parse()
: <a class="el" href="classOpenMS_1_1ims_1_1IMSAlphabetParser.html#ade573b26af8953d802a34ed40aef4e7d">IMSAlphabetParser< AlphabetElementType, Container, InputSource ></a>
, <a class="el" href="classOpenMS_1_1ims_1_1IMSAlphabetTextParser.html#aeb6a7f31bb319641868e71e66263d5e0">IMSAlphabetTextParser</a>
, <a class="el" href="classOpenMS_1_1LogConfigHandler.html#aaa88a2720dea0e6c813ad5b311b5be7e">LogConfigHandler</a>
</li>
<li>parse_()
: <a class="el" href="classOpenMS_1_1Internal_1_1XMLFile.html#ab08cc6e67bde4d478045ece950deb32b">XMLFile</a>
</li>
<li>PARSE_ERROR
: <a class="el" href="classOpenMS_1_1TOPPBase.html#ac74ddc700cf9fcf91d688b6d31ff9537ad73f40ad2eef48a6ca24988909c66c3e">TOPPBase</a>
</li>
<li>parseAdductsFile_()
: <a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#af8c171e55c33f793b3ae0b800f762f62">AccurateMassSearchEngine</a>
</li>
<li>parseAdductString_()
: <a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#ae6a8bd1db1cdeb1d98d58a8836707bfd">AccurateMassSearchEngine</a>
</li>
<li>parseCommandLine()
: <a class="el" href="classOpenMS_1_1Param.html#ab10ad5f837f7fa231a6c583ca82ba551">Param</a>
</li>
<li>parseCommandLine_()
: <a class="el" href="classOpenMS_1_1TOPPBase.html#a3e3d48a52e89fbaa72348f99c3a24295">TOPPBase</a>
</li>
<li>ParseError()
: <a class="el" href="classOpenMS_1_1Exception_1_1ParseError.html#a1927accfc81300a3f01edb33d64b34f3">ParseError</a>
</li>
<li>parseFormula_()
: <a class="el" href="classOpenMS_1_1EmpiricalFormula.html#a705903f69a8833acee00ae3e6351a975">EmpiricalFormula</a>
</li>
<li>parseHeader_()
: <a class="el" href="classOpenMS_1_1MSPFile.html#abacc6e05be4d96e8b16250c94a0bc70f">MSPFile</a>
</li>
<li>parseHMMModel_()
: <a class="el" href="classOpenMS_1_1PILISModel.html#a9402427f23c6c5b8be0f5234d6a94e14">PILISModel</a>
</li>
<li>parseIsotopeDistribution_()
: <a class="el" href="classOpenMS_1_1ElementDB.html#a06e23ea52cd9f433eb9056eb36ec2e88">ElementDB</a>
</li>
<li>parseMappingFile_()
: <a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#ae9f420f4f25b27e27ed1e97ea008ed5e">AccurateMassSearchEngine</a>
</li>
<li>parseMzXMLData()
: <a class="el" href="classOpenMS_1_1FTPeakDetectController.html#a65ccd59101090031894e92b54e18dde8">FTPeakDetectController</a>
</li>
<li>parseRange_()
: <a class="el" href="classOpenMS_1_1TOPPBase.html#ac7f9f64984349818c53c9c7b112ba989">TOPPBase</a>
</li>
<li>parseResidue_()
: <a class="el" href="classOpenMS_1_1ResidueDB.html#a9f31a357bddcaf4cb10d7011da4afffe">ResidueDB</a>
</li>
<li>parseString_()
: <a class="el" href="classOpenMS_1_1AASequence.html#acd465cf4002bc070631e05a505e7477f">AASequence</a>
</li>
<li>parseStructMappingFile_()
: <a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#a1abfabf5d0b75efd72bdcf7b6d966792">AccurateMassSearchEngine</a>
</li>
<li>parseTree_()
: <a class="el" href="classOpenMS_1_1SuffixArraySeqan.html#af401425e4fadc7f9dae12bde81ed2ba4">SuffixArraySeqan</a>
, <a class="el" href="classOpenMS_1_1SuffixArrayTrypticCompressed.html#a73b36bc7ca81bbdbfefe6447e9496c7e">SuffixArrayTrypticCompressed</a>
</li>
<li>partial_sequence_
: <a class="el" href="classOpenMS_1_1SequestInfile.html#a7d1048c4a36aeb4c73fc4c6e45b5f56f">SequestInfile</a>
</li>
<li>PARTICLEBEAM
: <a class="el" href="classOpenMS_1_1IonSource.html#a08b8f804d8602840858ce2d533db675fa564313b42cf82a9be19c95050133911b">IonSource</a>
</li>
<li>partition_()
: <a class="el" href="classOpenMS_1_1PILISCrossValidation.html#ab1a1f4e444c34e37b8477c26953b161a">PILISCrossValidation</a>
</li>
<li>partitionIntoRuns_()
: <a class="el" href="classOpenMS_1_1MzTabFile.html#af8453bd0a46a55608e29ab5fdebb211d">MzTabFile</a>
</li>
<li>pass_threshold_
: <a class="el" href="classOpenMS_1_1IdentificationHit.html#aae6beb3fdb909de04a30beffb77bca2f">IdentificationHit</a>
</li>
<li>passes()
: <a class="el" href="classOpenMS_1_1DataFilters.html#aeeb4b0c3cd0a97f11fad77d6c7dbd4f2">DataFilters</a>
</li>
<li>paste()
: <a class="el" href="classOpenMS_1_1TOPPASScene.html#a91ee2c81d4771601798fd031d2ebdee5">TOPPASScene</a>
</li>
<li>path
: <a class="el" href="structOpenMS_1_1Internal_1_1ToolExternalDetails.html#adb85e16ac8c9f62df2d33b1262649843">ToolExternalDetails</a>
, <a class="el" href="classOpenMS_1_1File.html#a43bdcb2e5cb18da64e25b2467c8fdcaa">File</a>
</li>
<li>path_
: <a class="el" href="classOpenMS_1_1Internal_1_1ParamXMLHandler.html#abbfb3d1a186943d601cc49ae1c219162">ParamXMLHandler</a>
</li>
<li>path_to_file_
: <a class="el" href="classOpenMS_1_1SourceFile.html#abacdc3c208b5477633bf426365c75888">SourceFile</a>
, <a class="el" href="classOpenMS_1_1SourceFileVisualizer.html#a1e4d979c341ed5b2787e9fb166e52912">SourceFileVisualizer</a>
</li>
<li>pattern_tolerance_
: <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#ae8eb5ec37d3582ac0963d06ea624ab48">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a>
</li>
<li>PAULIONTRAP
: <a class="el" href="classOpenMS_1_1MassAnalyzer.html#a134230547dd6de10b20f6904d9422ec3a1a7f597d623d72306c8adbdbfaaa350d">MassAnalyzer</a>
</li>
<li>pbuf_
: <a class="el" href="classOpenMS_1_1Logger_1_1LogStreamBuf.html#a188f8c6ddab01c31f0b5dff92928facd">LogStreamBuf</a>
</li>
<li>PD
: <a class="el" href="classOpenMS_1_1IonSource.html#aa1f350d16338b42e2384db2e5aa4a3f4aefbc069e0ac4cd293f3ba527bec2befe">IonSource</a>
, <a class="el" href="classOpenMS_1_1Precursor.html#ade504dd839d796a10e9fc4d840952dc1aefbc069e0ac4cd293f3ba527bec2befe">Precursor</a>
</li>
<li>peak
: <a class="el" href="structOpenMS_1_1PeakIndex.html#af40104dc784144260a2345e53e5f0305">PeakIndex</a>
, <a class="el" href="structOpenMS_1_1FeatureFinderAlgorithmPickedHelperStructs_1_1Seed.html#af40104dc784144260a2345e53e5f0305">FeatureFinderAlgorithmPickedHelperStructs::Seed</a>
, <a class="el" href="structOpenMS_1_1FeatureFinderAlgorithmPickedHelperStructs_1_1IsotopePattern.html#aec70588359757e4c6f30670fc74d2ebe">FeatureFinderAlgorithmPickedHelperStructs::IsotopePattern</a>
</li>
<li>Peak()
: <a class="el" href="structOpenMS_1_1ims_1_1IMSIsotopeDistribution_1_1Peak.html#a85c241f8d8923e278b4038e8b5ce6672">IMSIsotopeDistribution::Peak</a>
</li>
<li>Peak1D()
: <a class="el" href="classOpenMS_1_1Peak1D.html#a7332e749c14f8e29cc8e930a1c6032f6">Peak1D</a>
</li>
<li>Peak2D()
: <a class="el" href="classOpenMS_1_1Peak2D.html#afcadb8d92d31e84c91947132a1a4dd87">Peak2D</a>
</li>
<li>peak_bound_
: <a class="el" href="classOpenMS_1_1PeakPickerCWT.html#a171c8c18bbc3b9e9b4e7830b7932f6c2">PeakPickerCWT</a>
</li>
<li>peak_bound_ms2_level_
: <a class="el" href="classOpenMS_1_1PeakPickerCWT.html#a6f485724367210b7191a572b7ccf5667">PeakPickerCWT</a>
</li>
<li>peak_corr_bound_
: <a class="el" href="classOpenMS_1_1PeakPickerCWT.html#a66420b84e9f8bba8d9a11433baf18caa">PeakPickerCWT</a>
</li>
<li>peak_count_
: <a class="el" href="classOpenMS_1_1Internal_1_1MzDataHandler.html#a189e2aea7a4b8bbfcefbf62176d0966c">MzDataHandler< MapType ></a>
, <a class="el" href="classOpenMS_1_1Internal_1_1MzXMLHandler.html#a189e2aea7a4b8bbfcefbf62176d0966c">MzXMLHandler< MapType ></a>
</li>
<li>peak_depth
: <a class="el" href="structOpenMS_1_1ProbablePhosphoSites.html#a05520fbc0d6e27dd28a7262d0a3ba6a1">ProbablePhosphoSites</a>
</li>
<li>peak_map_
: <a class="el" href="classOpenMS_1_1SpectrumCheapDPCorr.html#a3ff431636c90263d0a88198b78acaa62">SpectrumCheapDPCorr</a>
, <a class="el" href="classOpenMS_1_1MSSim.html#aa071bc9b9f1a930addc72519b4c31d39">MSSim</a>
</li>
<li>peak_mass_tolerance
: <a class="el" href="structOpenMS_1_1ProteinIdentification_1_1SearchParameters.html#a59bf6893d99c96ed73c9699b2013fb76">ProteinIdentification::SearchParameters</a>
</li>
<li>peak_mass_tolerance_
: <a class="el" href="classOpenMS_1_1InspectInfile.html#a61cbefb333ea97a322a2d107bc0aa449">InspectInfile</a>
, <a class="el" href="classOpenMS_1_1SequestInfile.html#a61cbefb333ea97a322a2d107bc0aa449">SequestInfile</a>
</li>
<li>peak_penstyle_
: <a class="el" href="classOpenMS_1_1Spectrum1DCanvas.html#a9764ec71db15a65ce594333262e30a9d">Spectrum1DCanvas</a>
</li>
<li>PEAK_PICKING
: <a class="el" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9a181a4b8e81bcfae30e38dc548a5586f3">DataProcessing</a>
</li>
<li>peak_position_
: <a class="el" href="classOpenMS_1_1Annotation1DPeakItem.html#a06903ebcea9252d1c37531e732f9a50f">Annotation1DPeakItem</a>
</li>
<li>peak_positions_
: <a class="el" href="classOpenMS_1_1SILACFilter.html#af1b731c7f8e6095c30ed0b7148eaf16e">SILACFilter</a>
</li>
<li>PEAK_SCORE
: <a class="el" href="classOpenMS_1_1SHFeature.html#a7d2acdfa1fae5a1a63e2544d992504bc">SHFeature</a>
</li>
<li>peak_tolerance_
: <a class="el" href="classOpenMS_1_1ProteinIdentificationVisualizer.html#ab719cec21c19182f07e6d0c77cae94cd">ProteinIdentificationVisualizer</a>
</li>
<li>peak_type
: <a class="el" href="classOpenMS_1_1ims_1_1IMSIsotopeDistribution.html#a9bba62144488efd68638cb599e2a6375">IMSIsotopeDistribution</a>
</li>
<li>peak_width
: <a class="el" href="classOpenMS_1_1SILACFiltering.html#ab63fc6fa4e30325a870a716d13512a06">SILACFiltering</a>
</li>
<li>peak_width_
: <a class="el" href="classOpenMS_1_1MRMTransitionGroupPicker.html#a5e938e031680cf43ee3b1547ab6d1b1b">MRMTransitionGroupPicker</a>
</li>
<li>PeakAlignment()
: <a class="el" href="classOpenMS_1_1PeakAlignment.html#ab88a847cd1b9c3b2aca8f321ac595622">PeakAlignment</a>
</li>
<li>PeakConstIterator
: <a class="el" href="classOpenMS_1_1ContinuousWaveletTransform.html#ab7dc49f039c571f3f9374c2cf2707a3b">ContinuousWaveletTransform</a>
, <a class="el" href="classOpenMS_1_1ContinuousWaveletTransformNumIntegration.html#a04c36516132a7c8823c7cd19d26e41b8">ContinuousWaveletTransformNumIntegration</a>
</li>
<li>peakcount_
: <a class="el" href="classOpenMS_1_1NLargest.html#ab3ca0a2a86becb86bb9eb373af98ce06">NLargest</a>
, <a class="el" href="classOpenMS_1_1WindowMower.html#ab3ca0a2a86becb86bb9eb373af98ce06">WindowMower</a>
</li>
<li>PeakFileOptions()
: <a class="el" href="classOpenMS_1_1PeakFileOptions.html#ab328f005ea5626accd3ba77c25467874">PeakFileOptions</a>
</li>
<li>PeakIndex()
: <a class="el" href="structOpenMS_1_1PeakIndex.html#ab14f4e82cafc32dff9a8686205403caa">PeakIndex</a>
</li>
<li>PeakIntensityPredictor()
: <a class="el" href="classOpenMS_1_1PeakIntensityPredictor.html#a9dffd5d331794041c30ee8179a71a09c">PeakIntensityPredictor</a>
</li>
<li>PeakIterator
: <a class="el" href="classOpenMS_1_1SignalToNoiseEstimator.html#acc546122d56df6f7e010c922a64eb477">SignalToNoiseEstimator< Container ></a>
, <a class="el" href="classOpenMS_1_1SignalToNoiseEstimatorMeanIterative.html#a071e31f9182660d28c9d15c0bff7e150">SignalToNoiseEstimatorMeanIterative< Container ></a>
, <a class="el" href="classOpenMS_1_1SignalToNoiseEstimatorMedian.html#a071e31f9182660d28c9d15c0bff7e150">SignalToNoiseEstimatorMedian< Container ></a>
, <a class="el" href="classOpenMS_1_1Internal_1_1MzXMLHandler.html#a2b299003c15ddc54383dec1745f54944">MzXMLHandler< MapType ></a>
, <a class="el" href="classOpenMS_1_1Fitter1D.html#a1dca38fc61c4c5a612bca5eeb8730da3">Fitter1D</a>
, <a class="el" href="classOpenMS_1_1OptimizePeakDeconvolution.html#a335cff277df421bfa0ce8d2412f02134">OptimizePeakDeconvolution</a>
, <a class="el" href="classOpenMS_1_1OptimizePick.html#a335cff277df421bfa0ce8d2412f02134">OptimizePick</a>
, <a class="el" href="classOpenMS_1_1PeakPickerCWT.html#a96e2486520ae726ac045d42a3abd06e5">PeakPickerCWT</a>
, <a class="el" href="structOpenMS_1_1PeakPickerCWT_1_1PeakArea__.html#a96e2486520ae726ac045d42a3abd06e5">PeakPickerCWT::PeakArea_</a>
, <a class="el" href="structOpenMS_1_1PeakShape.html#a7b57a1b9b462900850eaaab16539b923">PeakShape</a>
</li>
<li>PeakIterator_
: <a class="el" href="classOpenMS_1_1LayerStatisticsDialog.html#a80573091ad12284739c6fc7c2ad6fbd1">LayerStatisticsDialog</a>
</li>
<li>PeakIteratorType
: <a class="el" href="classOpenMS_1_1Internal_1_1AreaIterator.html#a8d96a7aab759beae5a0d0d678a3ddfbc">AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT ></a>
</li>
<li>PeakMarker()
: <a class="el" href="classOpenMS_1_1PeakMarker.html#aaf72545ade121d4290d2a80424d22cd2">PeakMarker</a>
</li>
<li>PeakMassType
: <a class="el" href="classOpenMS_1_1ProteinIdentification.html#a5431b65220b7ad71b5e8768876ee3e53">ProteinIdentification</a>
</li>
<li>peakPairScore_()
: <a class="el" href="classOpenMS_1_1PeakAlignment.html#aba340861212c8551dfd782c00c4b3383">PeakAlignment</a>
</li>
<li>PeakPickerCWT()
: <a class="el" href="classOpenMS_1_1PeakPickerCWT.html#a29b2494c88fb28048a3160e12da7fc65">PeakPickerCWT</a>
</li>
<li>PeakPickerHiRes()
: <a class="el" href="classOpenMS_1_1PeakPickerHiRes.html#a688113827550c0e391b2caa7c9f1f556">PeakPickerHiRes</a>
</li>
<li>PeakPickerSH()
: <a class="el" href="classOpenMS_1_1PeakPickerSH.html#a70ae035d8fb46ccde0b1c2dfbabf2f47">PeakPickerSH</a>
</li>
<li>PEAKS
: <a class="el" href="classOpenMS_1_1SpectrumSettings.html#ab7b974cef152e339967fce62f49de0d9a07c53159ed2cb4665a4f16711140f4b5">SpectrumSettings</a>
</li>
<li>peaks
: <a class="el" href="structOpenMS_1_1IsotopeCluster.html#ad4c8689a4cd1334e0eccdadcb0cc5a54">IsotopeCluster</a>
, <a class="el" href="structOpenMS_1_1FeatureFinderAlgorithmPickedHelperStructs_1_1MassTrace.html#a45696e11061da82e7cfd8a0ee88f5d8e">FeatureFinderAlgorithmPickedHelperStructs::MassTrace< PeakType ></a>
, <a class="el" href="structOpenMS_1_1OptimizePeakDeconvolution_1_1Data.html#a94e1162876121fe33025ea03b5edb343">OptimizePeakDeconvolution::Data</a>
, <a class="el" href="structOpenMS_1_1OptimizePick_1_1Data.html#a94e1162876121fe33025ea03b5edb343">OptimizePick::Data</a>
, <a class="el" href="classOpenMS_1_1LayerData.html#ad37b5929f383962c7085ffd21bd37ad8">LayerData</a>
</li>
<li>peaks_
: <a class="el" href="classOpenMS_1_1PILISModel.html#ac0003a92036eb4ea6fb9cda839de39c2">PILISModel</a>
, <a class="el" href="classOpenMS_1_1ims_1_1IMSIsotopeDistribution.html#a139eb503fdda0bb9fcc11a2d9080f749">IMSIsotopeDistribution</a>
</li>
<li>peaks_container
: <a class="el" href="classOpenMS_1_1ims_1_1IMSIsotopeDistribution.html#a1ae668cf040be6a6a4587088d3b65f9e">IMSIsotopeDistribution</a>
</li>
<li>peaks_iterator
: <a class="el" href="classOpenMS_1_1ims_1_1IMSIsotopeDistribution.html#a828d3f003bfd30921f66a2185561b197">IMSIsotopeDistribution</a>
</li>
<li>peakselectionIsAllowed_()
: <a class="el" href="classOpenMS_1_1MRMFragmentSelection.html#aad779f252e6068a519bc47535f9e4417">MRMFragmentSelection</a>
</li>
<li>PeakShape()
: <a class="el" href="structOpenMS_1_1PeakShape.html#af3d4e7b137cfecc5b93a7dbeb997db15">PeakShape</a>
</li>
<li>PeakSpectrumCompareFunctor()
: <a class="el" href="classOpenMS_1_1PeakSpectrumCompareFunctor.html#aa94067fde55bc9222f8743b27e32b3f1">PeakSpectrumCompareFunctor</a>
</li>
<li>PeakType
: <a class="el" href="classOpenMS_1_1SignalToNoiseEstimator.html#a247cd97bb151013d862c08f747466c62">SignalToNoiseEstimator< Container ></a>
, <a class="el" href="classOpenMS_1_1SignalToNoiseEstimatorMeanIterative.html#ad66714675df0226aa73781cdc18a40f4">SignalToNoiseEstimatorMeanIterative< Container ></a>
, <a class="el" href="classOpenMS_1_1SignalToNoiseEstimatorMedian.html#ad66714675df0226aa73781cdc18a40f4">SignalToNoiseEstimatorMedian< Container ></a>
, <a class="el" href="classOpenMS_1_1Internal_1_1MzDataHandler.html#a6af0ff50dcb5a916e4cafba2b8f1d884">MzDataHandler< MapType ></a>
, <a class="el" href="classOpenMS_1_1Internal_1_1MzMLHandler.html#a6af0ff50dcb5a916e4cafba2b8f1d884">MzMLHandler< MapType ></a>
, <a class="el" href="classOpenMS_1_1Internal_1_1MzXMLHandler.html#a6af0ff50dcb5a916e4cafba2b8f1d884">MzXMLHandler< MapType ></a>
, <a class="el" href="classOpenMS_1_1Internal_1_1AreaIterator.html#ad01d706f431cfcb74b2c1bce6e12c840">AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT ></a>
, <a class="el" href="classOpenMS_1_1MRMTransitionGroup.html#a1f34797797ee172c37d26e9154cb37be">MRMTransitionGroup< SpectrumType, TransitionType ></a>
, <a class="el" href="classOpenMS_1_1MSChromatogram.html#a698f324c36214cc6ffb30a4868a88b2b">MSChromatogram< PeakT ></a>
, <a class="el" href="classOpenMS_1_1MSExperiment.html#a698f324c36214cc6ffb30a4868a88b2b">MSExperiment< PeakT, ChromatogramPeakT ></a>
, <a class="el" href="classOpenMS_1_1MSSpectrum.html#a698f324c36214cc6ffb30a4868a88b2b">MSSpectrum< PeakT ></a>
, <a class="el" href="structOpenMS_1_1EGHFitter1D_1_1Data.html#acb81e212d389ef4e5959be66d4e733c8">EGHFitter1D::Data</a>
, <a class="el" href="classOpenMS_1_1BaseModel.html#a19e7594d894168936a9d0b0a11c4f2c3">BaseModel< D ></a>
, <a class="el" href="structOpenMS_1_1EmgFitter1D_1_1Data.html#acb81e212d389ef4e5959be66d4e733c8">EmgFitter1D::Data</a>
, <a class="el" href="classOpenMS_1_1Fitter1D.html#acb81e212d389ef4e5959be66d4e733c8">Fitter1D</a>
, <a class="el" href="structOpenMS_1_1LmaGaussFitter1D_1_1Data.html#acb81e212d389ef4e5959be66d4e733c8">LmaGaussFitter1D::Data</a>
, <a class="el" href="structOpenMS_1_1LmaIsotopeFitter1D_1_1Data.html#acb81e212d389ef4e5959be66d4e733c8">LmaIsotopeFitter1D::Data</a>
, <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#a1f34797797ee172c37d26e9154cb37be">SpectrumCanvas</a>
</li>
<li>PEI
: <a class="el" href="classOpenMS_1_1IonSource.html#aa1f350d16338b42e2384db2e5aa4a3f4a0525c6afa4d96f74d29bbe7511a204db">IonSource</a>
</li>
<li>pen_
: <a class="el" href="classOpenMS_1_1Annotations1DContainer.html#a66a0579a0270601b03f436f32d8c36f0">Annotations1DContainer</a>
</li>
<li>pen_color_
: <a class="el" href="classOpenMS_1_1TOPPASVertex.html#a67d75c367bab70cdb7c841f48ddd640f">TOPPASVertex</a>
</li>
<li>penalties
: <a class="el" href="structOpenMS_1_1OptimizePeakDeconvolution_1_1Data.html#a4dbfc949c1c63f8a02dafd6a592d7955">OptimizePeakDeconvolution::Data</a>
, <a class="el" href="structOpenMS_1_1OptimizePick_1_1Data.html#a221f0a0f0ba583ad1920b8c7eb2dbed1">OptimizePick::Data</a>
, <a class="el" href="structOpenMS_1_1TwoDOptimization_1_1Data.html#a4dbfc949c1c63f8a02dafd6a592d7955">TwoDOptimization::Data</a>
</li>
<li>penalties_
: <a class="el" href="classOpenMS_1_1TwoDOptimization.html#a1491750eda19a5fae8d6aa0deafb60ce">TwoDOptimization</a>
, <a class="el" href="classOpenMS_1_1OptimizePeakDeconvolution.html#a1491750eda19a5fae8d6aa0deafb60ce">OptimizePeakDeconvolution</a>
, <a class="el" href="classOpenMS_1_1OptimizePick.html#af7df305bd35b7978a9c0cd0f838de3d9">OptimizePick</a>
</li>
<li>PenaltyFactors()
: <a class="el" href="structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactors.html#ab17f5ae37b7817df4c3479ebfa6f3f48">PenaltyFactors</a>
</li>
<li>PenaltyFactorsIntensity()
: <a class="el" href="structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactorsIntensity.html#a5b66388814c059aaec8d6eeda3df3d2e">PenaltyFactorsIntensity</a>
</li>
<li>pep_hit_
: <a class="el" href="classOpenMS_1_1ConsensusXMLFile.html#a963bc7db375d58bd099601271cc7a011">ConsensusXMLFile</a>
, <a class="el" href="classOpenMS_1_1FeatureXMLFile.html#a963bc7db375d58bd099601271cc7a011">FeatureXMLFile</a>
, <a class="el" href="classOpenMS_1_1IdXMLFile.html#a963bc7db375d58bd099601271cc7a011">IdXMLFile</a>
, <a class="el" href="classOpenMS_1_1ProtXMLFile.html#a31a26c145463d6fb7bc40165b37e5461">ProtXMLFile</a>
</li>
<li>pep_id_
: <a class="el" href="classOpenMS_1_1ConsensusXMLFile.html#ab59916b51e0840799c0a78ed04d7f859">ConsensusXMLFile</a>
, <a class="el" href="classOpenMS_1_1FeatureXMLFile.html#ab59916b51e0840799c0a78ed04d7f859">FeatureXMLFile</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1MzIdentMLHandler.html#a85ffcc3e0ab0440589f81115a8fcc945">MzIdentMLHandler</a>
, <a class="el" href="classOpenMS_1_1IdXMLFile.html#ab59916b51e0840799c0a78ed04d7f859">IdXMLFile</a>
, <a class="el" href="classOpenMS_1_1ProtXMLFile.html#a8f4fc041d31bffdd76053010d622a46d">ProtXMLFile</a>
</li>
<li>pep_ids_
: <a class="el" href="classOpenMS_1_1IdXMLFile.html#a16b766cf293f5756de000c4a138dc7d7">IdXMLFile</a>
</li>
<li>PEP_PROB
: <a class="el" href="classOpenMS_1_1MS2Info.html#ae773d06dc2ecad1fcd510cb81766632b">MS2Info</a>
</li>
<li>pep_quant_
: <a class="el" href="classOpenMS_1_1PeptideAndProteinQuant.html#a9c294e9f368e113196bb5306dd4ba1f6">PeptideAndProteinQuant</a>
</li>
<li>pep_sequences_
: <a class="el" href="classOpenMS_1_1Internal_1_1MzIdentMLHandler.html#aff7894089fcb45169b8fbdef2a88074a">MzIdentMLHandler</a>
</li>
<li>pep_to_prot
: <a class="el" href="structseqan_1_1FoundProteinFunctor.html#ad9081ddb3e203e12ade5735611565bd7">FoundProteinFunctor</a>
</li>
<li>PEPIons_()
: <a class="el" href="classOpenMS_1_1ConsensusID.html#a8c51221e0ca66a208e5defb9a5e210e9">ConsensusID</a>
</li>
<li>PepIterator()
: <a class="el" href="classOpenMS_1_1PepIterator.html#aebe4326baeb556ac80ae9429d5037956">PepIterator</a>
</li>
<li>PEPLIST
: <a class="el" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a87ac627b0f0c019e05a735e1a00b861d">FileTypes</a>
</li>
<li>PEPMatrix_()
: <a class="el" href="classOpenMS_1_1ConsensusID.html#aac4b39d45a36f45b645f437a384cc9a3">ConsensusID</a>
</li>
<li>PepNovoInfile()
: <a class="el" href="classOpenMS_1_1PepNovoInfile.html#a513f3e33f07e148a9ee904c341d25bcb">PepNovoInfile</a>
</li>
<li>PepNovoOutfile()
: <a class="el" href="classOpenMS_1_1PepNovoOutfile.html#aa79d7cd7fa3aa75653125fb9216d471a">PepNovoOutfile</a>
</li>
<li>PEPSIN_A
: <a class="el" href="classOpenMS_1_1ProteinIdentification.html#ac1976fd756a09ae4e26fe6b32fcb396ca9cf5aedb487753ed0440ab34d94e1b33">ProteinIdentification</a>
</li>
<li>Peptide
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#aa81ff3b563bdf4fff6c1e4e265f2275e">TargetedExperiment</a>
, <a class="el" href="structOpenMS_1_1PILISCrossValidation_1_1Peptide.html#a2a1148f0758cc3243a132589714555b0">PILISCrossValidation::Peptide</a>
, <a class="el" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a2a1148f0758cc3243a132589714555b0">Peptide</a>
</li>
<li>peptide
: <a class="el" href="structRNPxlReportRow.html#ab51b31a28b0576f728589809b41ee03b">RNPxlReportRow</a>
</li>
<li>peptide_
: <a class="el" href="classOpenMS_1_1AASequence.html#ac528eff5b609e889cd52dc4485fea8ce">AASequence</a>
</li>
<li>peptide_abundance_std_error_sub
: <a class="el" href="structOpenMS_1_1MzTabPeptideSectionRow.html#a776b084634c25d40dc48ef551a6c321e">MzTabPeptideSectionRow</a>
</li>
<li>peptide_abundance_stdev_sub
: <a class="el" href="structOpenMS_1_1MzTabPeptideSectionRow.html#a47eef66bb14c984db341200107b0f0ba">MzTabPeptideSectionRow</a>
</li>
<li>peptide_abundance_sub
: <a class="el" href="structOpenMS_1_1MzTabPeptideSectionRow.html#a99648fd9130f23b8775ca3f22bee71bc">MzTabPeptideSectionRow</a>
</li>
<li>peptide_entries
: <a class="el" href="structOpenMS_1_1ProteinResolver_1_1ResolverResult.html#a88e1a20751431172eda419c040c1f6d6">ProteinResolver::ResolverResult</a>
</li>
<li>peptide_group_label_
: <a class="el" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a1e481b16e0d9e15e23b44c5f9d5cd499">Peptide</a>
</li>
<li>peptide_group_labels_
: <a class="el" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a7d911367a452ea5ebf0d0191fdff15db">Peptide</a>
</li>
<li>peptide_hit
: <a class="el" href="structOpenMS_1_1ProteinResolver_1_1PeptideEntry.html#a26b016002a1a5373fce4c0f92bad35fd">ProteinResolver::PeptideEntry</a>
</li>
<li>peptide_hit_
: <a class="el" href="classOpenMS_1_1PepXMLFile.html#a43a54f0e9678737ac75292aad6e394a6">PepXMLFile</a>
</li>
<li>peptide_hits_
: <a class="el" href="classOpenMS_1_1XTandemXMLFile.html#acd0095030971876a406b843644d0db39">XTandemXMLFile</a>
</li>
<li>peptide_identification
: <a class="el" href="structOpenMS_1_1ProteinResolver_1_1PeptideEntry.html#ae7900f239dbb57aa72bf9e981d017554">ProteinResolver::PeptideEntry</a>
, <a class="el" href="structOpenMS_1_1ProteinResolver_1_1ResolverResult.html#a7344cdec248f331754514fb7bafd379c">ProteinResolver::ResolverResult</a>
</li>
<li>peptide_identification_index_
: <a class="el" href="classOpenMS_1_1Internal_1_1MascotXMLHandler.html#ab7e20aceddd0561a9d5b3b7b1b34f4c2">MascotXMLHandler</a>
</li>
<li>peptide_identifications_
: <a class="el" href="classOpenMS_1_1OMSSAXMLFile.html#a4495a14668db286a3a306cb0d41b3b82">OMSSAXMLFile</a>
</li>
<li>peptide_intensities_
: <a class="el" href="classOpenMS_1_1IsobaricNormalizer.html#af25c34a532a2dc7c80b99a8b94612d73">IsobaricNormalizer</a>
</li>
<li>peptide_mass_unit_
: <a class="el" href="classOpenMS_1_1SequestInfile.html#a78345ca923a1cd68efc546157505caff">SequestInfile</a>
</li>
<li>peptide_quantification_unit
: <a class="el" href="structOpenMS_1_1MzTabUnitIdMetaData.html#a257cd94d7c264073a8d2d71e7f4a323f">MzTabUnitIdMetaData</a>
</li>
<li>peptide_ratios_
: <a class="el" href="classOpenMS_1_1IsobaricNormalizer.html#ab768052c235798d6a4ffc079fb0a5eac">IsobaricNormalizer</a>
</li>
<li>peptide_ref
: <a class="el" href="structOpenSwath_1_1LightTransition.html#a516eebd919e19950a581ff42d06df675">LightTransition</a>
</li>
<li>peptide_ref_
: <a class="el" href="classOpenMS_1_1ReactionMonitoringTransition.html#a51b851580a0356da6ed94730a849b905">ReactionMonitoringTransition</a>
, <a class="el" href="classOpenMS_1_1IncludeExcludeTarget.html#a51b851580a0356da6ed94730a849b905">IncludeExcludeTarget</a>
</li>
<li>peptide_reference_map_
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#adcbe3c4030a97e978bd547928bf71d9e">TargetedExperiment</a>
</li>
<li>peptide_reference_map_dirty_
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#afc3f7fca733362e91a2bb91afc26e9e0">TargetedExperiment</a>
</li>
<li>peptide_weight
: <a class="el" href="structRNPxlReportRow.html#aef227ef993c7b5f57ebc4003bc0c5420">RNPxlReportRow</a>
</li>
<li>PeptideAndProteinQuant()
: <a class="el" href="classOpenMS_1_1PeptideAndProteinQuant.html#af79b41ec5d82b1edafc0bef0366d386d">PeptideAndProteinQuant</a>
</li>
<li>peptideCount()
: <a class="el" href="classOpenMS_1_1EnzymaticDigestion.html#ad0d24e15a1dd611eceb19eb9c421c579">EnzymaticDigestion</a>
</li>
<li>PeptideData()
: <a class="el" href="structOpenMS_1_1PeptideAndProteinQuant_1_1PeptideData.html#a5f1667a7032c74db7896886c185e43be">PeptideAndProteinQuant::PeptideData</a>
</li>
<li>PeptideEvidence()
: <a class="el" href="classOpenMS_1_1PeptideEvidence.html#a93c111189381d51de482a91922c7d0d3">PeptideEvidence</a>
</li>
<li>PeptideHit()
: <a class="el" href="classOpenMS_1_1PeptideHit.html#a8be321bbdb9df90a4e473bdfc9b22d1b">PeptideHit</a>
</li>
<li>peptidehit_charge_
: <a class="el" href="classOpenMS_1_1PeptideHitVisualizer.html#a9c0a27601bd24ab049b850c23753efe5">PeptideHitVisualizer</a>
</li>
<li>peptidehit_rank_
: <a class="el" href="classOpenMS_1_1PeptideHitVisualizer.html#a58597b3b3ec99578a19b455ceb9c69ed">PeptideHitVisualizer</a>
</li>
<li>peptidehit_score_
: <a class="el" href="classOpenMS_1_1PeptideHitVisualizer.html#a3033e1f6c3b448c3da44381ed478953a">PeptideHitVisualizer</a>
</li>
<li>peptidehit_sequence_
: <a class="el" href="classOpenMS_1_1PeptideHitVisualizer.html#a4a9b1e7317863970f6a71bb38ff2fb33">PeptideHitVisualizer</a>
</li>
<li>PeptideHitVisualizer()
: <a class="el" href="classOpenMS_1_1PeptideHitVisualizer.html#ab84bc69e8d29990ecb39254ef94fdf0f">PeptideHitVisualizer</a>
</li>
<li>PeptideIdent
: <a class="el" href="structOpenMS_1_1ProteinResolver_1_1ResolverResult.html#a7aead736a07eaf25623ad7bfa1f0ee2da601b23b50dc091faa7e8e5a66b9c723b">ProteinResolver::ResolverResult</a>
</li>
<li>PeptideIdentification()
: <a class="el" href="classOpenMS_1_1PeptideIdentification.html#a46a44bce76bc784d959c63d0be6b0bda">PeptideIdentification</a>
</li>
<li>PeptideIdentificationVisualizer
: <a class="el" href="classOpenMS_1_1MetaDataBrowser.html#aa90ed5bd7d36c93af53fc175ec74af76">MetaDataBrowser</a>
, <a class="el" href="classOpenMS_1_1PeptideIdentificationVisualizer.html#af95a57cecdaacbf09be967f79803dfa0">PeptideIdentificationVisualizer</a>
</li>
<li>peptideMassRule_()
: <a class="el" href="classOpenMS_1_1IsotopeWaveletTransform.html#a92b5ba1d3bbd4724fae3ce6c61c462e0">IsotopeWaveletTransform< PeakType ></a>
</li>
<li>peptideProbabilityThreshold_
: <a class="el" href="classOpenMS_1_1SuperHirnParameters.html#a4b5ff39f2f5468365f1608e2bb1ef9d1">SuperHirnParameters</a>
</li>
<li>PeptideQuant
: <a class="el" href="classOpenMS_1_1PeptideAndProteinQuant.html#a2750aa75b50972d89e20d01214ff1c01">PeptideAndProteinQuant</a>
</li>
<li>PeptideReferenceMapType
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#ad5007e557f54c148146023a446c1cfeb">TargetedExperiment</a>
</li>
<li>PeptideRefMap_
: <a class="el" href="classOpenMS_1_1MRMFeatureFinderScoring.html#a7f80a0cb2acd6063fc093e3d79aa04b0">MRMFeatureFinderScoring</a>
</li>
<li>PeptideRTMap_
: <a class="el" href="classOpenMS_1_1ChromatogramExtractor.html#ae505eef01d0c7c8b342bac83fcd81f23">ChromatogramExtractor</a>
, <a class="el" href="classOpenMS_1_1MRMFeatureFinderScoring.html#ae505eef01d0c7c8b342bac83fcd81f23">MRMFeatureFinderScoring</a>
</li>
<li>peptides
: <a class="el" href="structOpenSwath_1_1LightTargetedExperiment.html#a6ba8ddd496526c7469154c7582f2defe">LightTargetedExperiment</a>
, <a class="el" href="structOpenSwath_1_1Protein.html#a7d65b1dcc645645ce5a480c3205ad2a9">Protein</a>
, <a class="el" href="structOpenMS_1_1ProteinResolver_1_1ProteinEntry.html#a6322cf02bec71a24fe59faedfb6bbf94">ProteinResolver::ProteinEntry</a>
, <a class="el" href="structOpenMS_1_1ProteinResolver_1_1MSDGroup.html#a6322cf02bec71a24fe59faedfb6bbf94">ProteinResolver::MSDGroup</a>
, <a class="el" href="structOpenMS_1_1ProteinResolver_1_1ISDGroup.html#a6322cf02bec71a24fe59faedfb6bbf94">ProteinResolver::ISDGroup</a>
, <a class="el" href="classOpenMS_1_1LayerData.html#a445a60c263ff4a041acf8d094274b52b">LayerData</a>
</li>
<li>peptides_
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#a748a750efa2c7114ea34f16e0742c5a7">TargetedExperiment</a>
, <a class="el" href="classOpenMS_1_1PepXMLFile.html#a6f28b892172fe0ec098cb6781e58c7f4">PepXMLFile</a>
, <a class="el" href="classOpenMS_1_1PepXMLFileMascot.html#a100291fa9519e78244c2de07bc830d0c">PepXMLFileMascot</a>
, <a class="el" href="classOpenMS_1_1BaseFeature.html#adab38ed9f5e6a92eafa936ce71fd4d81">BaseFeature</a>
</li>
<li>peptideScore_()
: <a class="el" href="classOpenMS_1_1AScore.html#a974b1fd76904f958b4b119b22a95fb40">AScore</a>
</li>
<li>PeptideSequence
: <a class="el" href="structOpenMS_1_1TransitionTSVReader_1_1TSVTransition.html#a2cba6f8df964f70ecbec0add2f156283">TransitionTSVReader::TSVTransition</a>
</li>
<li>PeptideTransitionMapType
: <a class="el" href="classOpenMS_1_1MRMDecoy.html#a55f8941379be7a49c63aa7d4d88eee0a">MRMDecoy</a>
</li>
<li>PeptideType
: <a class="el" href="classOpenMS_1_1DIAScoring.html#af71c1f3e928ced2c6264ed63155d8de0">DIAScoring</a>
, <a class="el" href="classOpenMS_1_1MRMFeatureFinderScoring.html#af71c1f3e928ced2c6264ed63155d8de0">MRMFeatureFinderScoring</a>
, <a class="el" href="classOpenSwath_1_1MRMScoring.html#af71c1f3e928ced2c6264ed63155d8de0">MRMScoring</a>
</li>
<li>PeptideVectorType
: <a class="el" href="classOpenMS_1_1MRMDecoy.html#a87ab7393ee32c7d08b5db91c4d1a95d8">MRMDecoy</a>
, <a class="el" href="classOpenMS_1_1TransitionTSVReader.html#a87ab7393ee32c7d08b5db91c4d1a95d8">TransitionTSVReader</a>
</li>
<li>PEPXML
: <a class="el" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a8afea1d83fb17a85640f67f9b35b64d2">FileTypes</a>
</li>
<li>PepXMLFile()
: <a class="el" href="classOpenMS_1_1PepXMLFile.html#a9b8d5746b2caf95804846c058c7cb062">PepXMLFile</a>
</li>
<li>PepXMLFileMascot()
: <a class="el" href="classOpenMS_1_1PepXMLFileMascot.html#aad79592433fa0af2245e90022bd6b630">PepXMLFileMascot</a>
</li>
<li>percentage_
: <a class="el" href="classOpenMS_1_1GradientVisualizer.html#ab211a9da2d838b98d47d0cf5965c37fc">GradientVisualizer</a>
</li>
<li>percentage_factor_
: <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#af2d871e6ebcb4f32e640abc2e10539b5">SpectrumCanvas</a>
</li>
<li>percentageIntensityElutionBorderVariation_
: <a class="el" href="classOpenMS_1_1SuperHirnParameters.html#aa39ca2e1a0209891a425023757f1c197">SuperHirnParameters</a>
</li>
<li>percentages_
: <a class="el" href="classOpenMS_1_1Gradient.html#a83a4b5cf4b4cd31610bc0479208e3d6c">Gradient</a>
</li>
<li>performAlignment()
: <a class="el" href="classOpenMS_1_1Spectrum1DCanvas.html#a884587822bf004e93bdfc0b4b07022fd">Spectrum1DCanvas</a>
, <a class="el" href="classOpenMS_1_1Spectrum1DWidget.html#a884587822bf004e93bdfc0b4b07022fd">Spectrum1DWidget</a>
</li>
<li>performCrossValidation()
: <a class="el" href="classOpenMS_1_1SVMWrapper.html#aa6c64f72bedc32847ec042c925d7099d">SVMWrapper</a>
</li>
<li>Permut
: <a class="el" href="classOpenMS_1_1CompNovoIdentification.html#a6cb23966d9741fbd0d2e87a1668042df">CompNovoIdentification</a>
, <a class="el" href="classOpenMS_1_1CompNovoIdentificationCID.html#a6cb23966d9741fbd0d2e87a1668042df">CompNovoIdentificationCID</a>
, <a class="el" href="classOpenMS_1_1CompNovoIdentificationBase_1_1Permut.html#ad8e8227baac7ad39c8691a1065bfe25a">CompNovoIdentificationBase::Permut</a>
</li>
<li>permut_
: <a class="el" href="classOpenMS_1_1CompNovoIdentificationBase_1_1Permut.html#abab6ee264843d8d40e1ee5463b327a91">CompNovoIdentificationBase::Permut</a>
</li>
<li>permute_()
: <a class="el" href="classOpenMS_1_1CompNovoIdentificationBase.html#a6c4e9f2bd8d2f8ee5d253e579571b72e">CompNovoIdentificationBase</a>
</li>
<li>permute_cache_
: <a class="el" href="classOpenMS_1_1CompNovoIdentificationBase.html#a9f3b121bc4966a49c6e36572f4f2ae9b">CompNovoIdentificationBase</a>
</li>
<li>persistence_id_
: <a class="el" href="classOpenMS_1_1PersistentObject.html#af3010751b605ab1544b527f76a49c6a7">PersistentObject</a>
</li>
<li>PersistentObject()
: <a class="el" href="classOpenMS_1_1PersistentObject.html#a7e87ad10dca0d49591d34fc0b3a7b1d8">PersistentObject</a>
</li>
<li>pg_scores_
: <a class="el" href="classOpenMS_1_1MRMFeature.html#a63b259bd2f63f89719669bcf83a38a6e">MRMFeature</a>
</li>
<li>PGScoresType
: <a class="el" href="classOpenMS_1_1MRMFeature.html#a099f78b87852c03a6de3815515d99230">MRMFeature</a>
</li>
<li>ph_
: <a class="el" href="classOpenMS_1_1Digestion.html#ad0ff9406447f08075e0b6dbde9eb37e1">Digestion</a>
</li>
<li>PHD
: <a class="el" href="classOpenMS_1_1Precursor.html#ade504dd839d796a10e9fc4d840952dc1a4187f6dae406f24b70e3c34a7448b15f">Precursor</a>
</li>
<li>PHOTODIODEARRAYDETECTOR
: <a class="el" href="classOpenMS_1_1IonDetector.html#a1d1cfd8ffb84e947f82999c682b666a7a2b44c2af82a0218d3cb5faa3d163fa1f">IonDetector</a>
</li>
<li>PHOTOMULTIPLIER
: <a class="el" href="classOpenMS_1_1IonDetector.html#a1d1cfd8ffb84e947f82999c682b666a7a80abf032317ac0521e7ea0c601e3b387">IonDetector</a>
</li>
<li>PI
: <a class="el" href="classOpenMS_1_1IonSource.html#aa1f350d16338b42e2384db2e5aa4a3f4a5b26cd07c89ea86afa2fa793fb7fc729">IonSource</a>
, <a class="el" href="classOpenMS_1_1SHFeature.html#a4e36555c8609254715858261f34dfd94">SHFeature</a>
</li>
<li>pick()
: <a class="el" href="classOpenMS_1_1PeakPickerCWT.html#aee9dc4d8c347996968da434e0babaa0b">PeakPickerCWT</a>
, <a class="el" href="classOpenMS_1_1PeakPickerHiRes.html#ab5a7bacb537322276b79bd805ba22621">PeakPickerHiRes</a>
, <a class="el" href="classOpenMS_1_1PeakPickerSH.html#abbf9f8b638eff43311f3ac73d275179b">PeakPickerSH</a>
</li>
<li>pickAndCalibrate()
: <a class="el" href="classOpenMS_1_1TOFCalibration.html#ad64ffcd69513c45a65d9c2866729b3d9">TOFCalibration</a>
</li>
<li>pickChromatogram()
: <a class="el" href="classOpenMS_1_1MRMTransitionGroupPicker.html#ac5fb6f613cfdbce3851f3c623c16f7aa">MRMTransitionGroupPicker</a>
</li>
<li>picked_chroms_
: <a class="el" href="classOpenMS_1_1MRMTransitionGroupPicker.html#addd481a2f79201012bea9bc69a64fcce">MRMTransitionGroupPicker</a>
</li>
<li>picked_exp_
: <a class="el" href="classOpenMS_1_1SILACFiltering.html#a445b1d6dd657b76575389dc5b0e42113">SILACFiltering</a>
</li>
<li>picked_exp_seeds_
: <a class="el" href="classOpenMS_1_1SILACFiltering.html#a11fead9b0087b53d3aafa414b3753818">SILACFiltering</a>
</li>
<li>picked_peaks
: <a class="el" href="structOpenMS_1_1TwoDOptimization_1_1Data.html#a2dcab4dd664c2b08f478ebde32edaa74">TwoDOptimization::Data</a>
</li>
<li>pickExperiment()
: <a class="el" href="classOpenMS_1_1MRMFeatureFinderScoring.html#af879ba2bc9bcc83bed021af39c24e9d6">MRMFeatureFinderScoring</a>
, <a class="el" href="classOpenMS_1_1PeakPickerCWT.html#ad646a14b7c4a0891c603ba2f548ed10e">PeakPickerCWT</a>
, <a class="el" href="classOpenMS_1_1PeakPickerHiRes.html#a805fcad9297b5ec0ee96b811e79ae895">PeakPickerHiRes</a>
, <a class="el" href="classOpenMS_1_1PeakPickerSH.html#ad646a14b7c4a0891c603ba2f548ed10e">PeakPickerSH</a>
</li>
<li>pickSeeds_()
: <a class="el" href="classOpenMS_1_1SILACFiltering.html#a621a81b06e938dd1c5d025a25c7c420e">SILACFiltering</a>
</li>
<li>pickTransitionGroup()
: <a class="el" href="classOpenMS_1_1MRMTransitionGroupPicker.html#acce2a9f0fe8d27893f6a027a4598e8ba">MRMTransitionGroupPicker</a>
</li>
<li>pidv_caller_
: <a class="el" href="classOpenMS_1_1PeptideIdentificationVisualizer.html#ad418fd39e107a2088770446cc7ba0a11">PeptideIdentificationVisualizer</a>
, <a class="el" href="classOpenMS_1_1ProteinIdentificationVisualizer.html#ad418fd39e107a2088770446cc7ba0a11">ProteinIdentificationVisualizer</a>
</li>
<li>PILISCrossValidation()
: <a class="el" href="classOpenMS_1_1PILISCrossValidation.html#a8e5b118fb22d7aa8ca5e1a424a43b068">PILISCrossValidation</a>
</li>
<li>PILISIdentification()
: <a class="el" href="classOpenMS_1_1PILISIdentification.html#a12e2ded33e3728cb4ce979f826034525">PILISIdentification</a>
</li>
<li>PILISModel()
: <a class="el" href="classOpenMS_1_1PILISModel.html#aac11a9a6ff66f790fc8b79488afb1863">PILISModel</a>
</li>
<li>PILISModelGenerator()
: <a class="el" href="classOpenMS_1_1PILISModelGenerator.html#a000326e494874af4ee3d2678eb409c93">PILISModelGenerator</a>
</li>
<li>PILISNeutralLossModel()
: <a class="el" href="classOpenMS_1_1PILISNeutralLossModel.html#aae281898fb4761f9d2f1301db2caecb3">PILISNeutralLossModel</a>
</li>
<li>PILISNeutralLossModelGenerator
: <a class="el" href="classOpenMS_1_1PILISNeutralLossModel.html#a1c929c4590965c51a408eb67ae209bd9">PILISNeutralLossModel</a>
</li>
<li>PILISScoring()
: <a class="el" href="classOpenMS_1_1PILISScoring.html#a9b479aa8c230f51002d6ed744532ef4d">PILISScoring</a>
</li>
<li>pipelineDroppedOnWidget()
: <a class="el" href="classOpenMS_1_1TOPPASWidget.html#a7499fe1587100653aeed38d0c68a549f">TOPPASWidget</a>
</li>
<li>pipelineErrorSlot()
: <a class="el" href="classOpenMS_1_1TOPPASScene.html#ac0a435dbd87899b7c420139f0e554488">TOPPASScene</a>
</li>
<li>pipelineExecutionFailed()
: <a class="el" href="classOpenMS_1_1TOPPASScene.html#afdaf7a49aebe20dd8b8afba0ef88e850">TOPPASScene</a>
</li>
<li>pka_
: <a class="el" href="classOpenMS_1_1Residue.html#a7f3864de19d233b5ce296f0fcc439009">Residue</a>
</li>
<li>pkb_
: <a class="el" href="classOpenMS_1_1Residue.html#a3c9456001aa939fad589d451a1c1696b">Residue</a>
</li>
<li>pkc_
: <a class="el" href="classOpenMS_1_1Residue.html#a50c2d52762a98566668892aea5bc2479">Residue</a>
</li>
<li>plotCombinedSpectra()
: <a class="el" href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html#a932376789d2116697aa3d1bd3180aec9">ClusteredMS2ConsensusSpectrum</a>
</li>
<li>plotTargetDecoyEstimation()
: <a class="el" href="classOpenMS_1_1Math_1_1PosteriorErrorProbabilityModel.html#a2c38b50a8f64f557e2da095e3869e978">PosteriorErrorProbabilityModel</a>
</li>
<li>pMZ_LIST
: <a class="el" href="classOpenMS_1_1ProcessData.html#a7c7714105bef941ae216ae393ef432d7">ProcessData</a>
</li>
<li>PNG
: <a class="el" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a842c5fc4bbe3f780e57c76d1a3cafe9f">FileTypes</a>
</li>
<li>PointArrayType
: <a class="el" href="classOpenMS_1_1ConvexHull2D.html#abdcce0f11b8d73a2b4da5b1a00457d7b">ConvexHull2D</a>
</li>
<li>PointArrayTypeConstIterator
: <a class="el" href="classOpenMS_1_1ConvexHull2D.html#aac783d0e24617004be11da77cb842c3e">ConvexHull2D</a>
</li>
<li>POINTCOLLECTOR
: <a class="el" href="classOpenMS_1_1IonDetector.html#a1d1cfd8ffb84e947f82999c682b666a7a74d32454593ae69307e86dbca912a605">IonDetector</a>
</li>
<li>PointCoordinate
: <a class="el" href="classOpenMS_1_1HierarchicalClustering.html#aca2602afc975d9f733156b82f9ac0025">HierarchicalClustering< PointRef ></a>
</li>
<li>Pointer
: <a class="el" href="classOpenMS_1_1Matrix.html#aca3af0291e687921d32e8500b5070425">Matrix< Value ></a>
</li>
<li>pointer
: <a class="el" href="classOpenMS_1_1AASequence_1_1ConstIterator.html#ab2ae92b6ef663eeca1888fd754fda9f4">AASequence::ConstIterator</a>
, <a class="el" href="classOpenMS_1_1AASequence_1_1Iterator.html#ab2ae92b6ef663eeca1888fd754fda9f4">AASequence::Iterator</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1AreaIterator.html#a2aa253eb72ecbc469c97c3996ef9fa32">AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT ></a>
, <a class="el" href="classOpenMS_1_1ConstRefVector_1_1ConstRefVectorConstIterator.html#ac8c12b18f0df60ef52a9ab37752bea63">ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT ></a>
, <a class="el" href="classOpenMS_1_1ConstRefVector_1_1ConstRefVectorIterator.html#abd39350d8dc6ba9aca03b5d7b8ae3eb0">ConstRefVector< ContainerT >::ConstRefVectorIterator< ValueT ></a>
, <a class="el" href="classOpenMS_1_1ConstRefVector.html#a34822495a5831129be3bda70b533e281">ConstRefVector< ContainerT ></a>
, <a class="el" href="classOpenMS_1_1DPosition.html#ad82e97b3f96cdc1c8b53c0a23d5bf4f5">DPosition< D, TCoordinateType ></a>
, <a class="el" href="classOpenMS_1_1Matrix.html#aa2158dc2d25210ef557a40d3b8a521e3">Matrix< Value ></a>
, <a class="el" href="classOpenMS_1_1SparseVector.html#a42836f8c80f36d3bd8df6bc96a4ccac1">SparseVector< Value ></a>
, <a class="el" href="classOpenMS_1_1Internal_1_1IntensityIteratorWrapper.html#a7b372cba880564f3db44172a6f285c8b">IntensityIteratorWrapper< IteratorT ></a>
</li>
<li>pointerComparator()
: <a class="el" href="structOpenMS_1_1PointerComparator.html#aeb071107569224c672893cd945dff7fe">PointerComparator< Cmp ></a>
</li>
<li>PointerComparator()
: <a class="el" href="structOpenMS_1_1PointerComparator.html#ad5e23cd93d6c4542dda28ad4a41d0738">PointerComparator< Cmp ></a>
</li>
<li>PointerType
: <a class="el" href="classOpenMS_1_1Map.html#ae6b548b8516b3cdaf19f75dbf0adcb66">Map< Key, T ></a>
</li>
<li>points
: <a class="el" href="classOpenMS_1_1HierarchicalClustering_1_1TreeNode.html#aafbf0dd8fc154353851b4a2d77e82f15">HierarchicalClustering< PointRef >::TreeNode</a>
, <a class="el" href="classOpenMS_1_1SILACPattern.html#a334e986272c6b2059819a750a8a581fc">SILACPattern</a>
</li>
<li>PointType
: <a class="el" href="classOpenMS_1_1ConvexHull2D.html#a8d96673e05aa50d1e6adbedd62614232">ConvexHull2D</a>
, <a class="el" href="classOpenMS_1_1Annotation1DItem.html#a8d96673e05aa50d1e6adbedd62614232">Annotation1DItem</a>
, <a class="el" href="classOpenMS_1_1Annotations1DContainer.html#a8d96673e05aa50d1e6adbedd62614232">Annotations1DContainer</a>
, <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#a8d96673e05aa50d1e6adbedd62614232">SpectrumCanvas</a>
</li>
<li>polar()
: <a class="el" href="classOpenMS_1_1AAIndex.html#a4e7af7c6ed63039bee4273b3edfdab05">AAIndex</a>
</li>
<li>Polarity
: <a class="el" href="classOpenMS_1_1IonSource.html#a84a045fa4024e050ca8be6d33311a054">IonSource</a>
</li>
<li>polarity_
: <a class="el" href="classOpenMS_1_1InstrumentSettings.html#a22ef52ead7ae9aa4a1f3b861070736b7">InstrumentSettings</a>
, <a class="el" href="classOpenMS_1_1IonSource.html#adb7556cc3f6c61fab66b69ce2b0e6a36">IonSource</a>
, <a class="el" href="classOpenMS_1_1IonSourceVisualizer.html#aba858466f0e8581c68d64694de0d136c">IonSourceVisualizer</a>
</li>
<li>POLNULL
: <a class="el" href="classOpenMS_1_1IonSource.html#a84a045fa4024e050ca8be6d33311a054ae067ec7e2cc92a99865850c1fb96c5df">IonSource</a>
</li>
<li>pool_file_
: <a class="el" href="classOpenMS_1_1DocumentIDTagger.html#a10cf1f48bfc918d728b4d15ee95165a0">DocumentIDTagger</a>
</li>
<li>pop_back()
: <a class="el" href="classOpenMS_1_1ConstRefVector.html#a058bda4957df6a97b1ea6c9fd783f672">ConstRefVector< ContainerT ></a>
</li>
<li>pos
: <a class="el" href="structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactors.html#a5e9dd75fc35bca3ebe4981821077aebe">PenaltyFactors</a>
</li>
<li>pos_
: <a class="el" href="classOpenMS_1_1ConsensusXMLFile.html#a590ed25661a837bfedb38402e2c50b47">ConsensusXMLFile</a>
, <a class="el" href="classOpenMS_1_1Math_1_1ROCCurve.html#af115785cb1865606754eb19bca67ed76">ROCCurve</a>
</li>
<li>pos_adducts_
: <a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#a59e4ea79f4771e4b3fb342bc84711d48">AccurateMassSearchEngine</a>
</li>
<li>pos_adducts_fname_
: <a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#a0f782943339fac9357fefc22c3807cdc">AccurateMassSearchEngine</a>
</li>
<li>pos_charges_
: <a class="el" href="classOpenMS_1_1Compomer.html#a9c196faf8786109533ddc88ab71ece1a">Compomer</a>
</li>
<li>pos_col_
: <a class="el" href="classOpenMS_1_1MultiGradient.html#a7b02cb929de28d6178a8fd09f884a193">MultiGradient</a>
</li>
<li>pos_param_pairs_
: <a class="el" href="structOpenMS_1_1MzTabModification.html#a6a8c72144488216f7b8adeb546929e19">MzTabModification</a>
</li>
<li>pos_range_
: <a class="el" href="classOpenMS_1_1RangeManager.html#ab5f4f0d11b0ceff54d8664d1cce7fd8a">RangeManager< D ></a>
</li>
<li>PoseClusteringAffineSuperimposer()
: <a class="el" href="classOpenMS_1_1PoseClusteringAffineSuperimposer.html#a73d3e77c7d728020c17c087691a3df08">PoseClusteringAffineSuperimposer</a>
</li>
<li>PoseClusteringShiftSuperimposer()
: <a class="el" href="classOpenMS_1_1PoseClusteringShiftSuperimposer.html#a019bbe831e8383ba07b5215849625ab1">PoseClusteringShiftSuperimposer</a>
</li>
<li>position()
: <a class="el" href="classOpenMS_1_1SparseVector_1_1SparseVectorConstReverseIterator.html#af209ecebb9e72fd28fe1e57dd533bb70">SparseVector< Value >::SparseVectorConstReverseIterator</a>
, <a class="el" href="structOpenMS_1_1EnzymaticDigestion_1_1BindingSite.html#ace39a622dc8207b5198498794e9f7878">EnzymaticDigestion::BindingSite</a>
, <a class="el" href="structOpenMS_1_1CompNovoIonScoringBase_1_1IonScore.html#a846c5b0c3736962b9d14d676802d347c">CompNovoIonScoringBase::IonScore</a>
, <a class="el" href="classOpenMS_1_1DeNovoIonScoring_1_1IonScore.html#a846c5b0c3736962b9d14d676802d347c">DeNovoIonScoring::IonScore</a>
, <a class="el" href="classOpenMS_1_1SparseVector_1_1SparseVectorIterator.html#af209ecebb9e72fd28fe1e57dd533bb70">SparseVector< Value >::SparseVectorIterator</a>
, <a class="el" href="classOpenMS_1_1SparseVector_1_1SparseVectorReverseIterator.html#af209ecebb9e72fd28fe1e57dd533bb70">SparseVector< Value >::SparseVectorReverseIterator</a>
, <a class="el" href="classOpenMS_1_1SparseVector_1_1SparseVectorConstIterator.html#af209ecebb9e72fd28fe1e57dd533bb70">SparseVector< Value >::SparseVectorConstIterator</a>
, <a class="el" href="classOpenMS_1_1MultiGradient.html#aefeb3c6e210dad3c27193b8470a2abd8">MultiGradient</a>
</li>
<li>position_
: <a class="el" href="classOpenMS_1_1Math_1_1AveragePosition.html#a40dd229488d20ae1f6b5dff9cc7a51e9">AveragePosition< D ></a>
, <a class="el" href="classOpenMS_1_1SparseVector_1_1SparseVectorConstReverseIterator.html#a2d5e07ff4e45a29ac7e4fe577609b139">SparseVector< Value >::SparseVectorConstReverseIterator</a>
, <a class="el" href="classOpenMS_1_1AASequence_1_1ConstIterator.html#aa2e92b130c1f37606049aa4c2c3f7b5c">AASequence::ConstIterator</a>
, <a class="el" href="classOpenMS_1_1AASequence_1_1Iterator.html#aa2e92b130c1f37606049aa4c2c3f7b5c">AASequence::Iterator</a>
, <a class="el" href="classOpenMS_1_1ConstRefVector_1_1ConstRefVectorConstIterator.html#a8ee4fa4e0acd968f85032cb10c8a5be0">ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT ></a>
, <a class="el" href="classOpenMS_1_1SparseVector_1_1SparseVectorIterator.html#a2d5e07ff4e45a29ac7e4fe577609b139">SparseVector< Value >::SparseVectorIterator</a>
, <a class="el" href="classOpenMS_1_1SparseVector_1_1SparseVectorReverseIterator.html#a2d5e07ff4e45a29ac7e4fe577609b139">SparseVector< Value >::SparseVectorReverseIterator</a>
, <a class="el" href="classOpenMS_1_1SparseVector_1_1SparseVectorConstIterator.html#a2d5e07ff4e45a29ac7e4fe577609b139">SparseVector< Value >::SparseVectorConstIterator</a>
, <a class="el" href="classOpenMS_1_1ChromatogramPeak.html#a40dd229488d20ae1f6b5dff9cc7a51e9">ChromatogramPeak</a>
, <a class="el" href="classOpenMS_1_1Peak1D.html#a40dd229488d20ae1f6b5dff9cc7a51e9">Peak1D</a>
, <a class="el" href="classOpenMS_1_1Peak2D.html#a40dd229488d20ae1f6b5dff9cc7a51e9">Peak2D</a>
, <a class="el" href="classOpenMS_1_1Annotation1DPeakItem.html#ad2202a5a4aa68d7e1a0d836b4c5eb97e">Annotation1DPeakItem</a>
, <a class="el" href="classOpenMS_1_1Annotation1DTextItem.html#ad2202a5a4aa68d7e1a0d836b4c5eb97e">Annotation1DTextItem</a>
</li>
<li>position_weighted_sum_
: <a class="el" href="classOpenMS_1_1Math_1_1AveragePosition.html#ae83ed915482476348e69c3db4fdccf13">AveragePosition< D ></a>
</li>
<li>PositionRangeType
: <a class="el" href="classOpenMS_1_1RangeManager.html#ace303f7dacc306627f694eb21d6a8366">RangeManager< D ></a>
</li>
<li>positions
: <a class="el" href="structOpenMS_1_1OptimizePeakDeconvolution_1_1Data.html#a5e129442f31432fc1dbb5d3573754012">OptimizePeakDeconvolution::Data</a>
, <a class="el" href="structOpenMS_1_1OptimizePick_1_1Data.html#a649cc300c964845ccc272fd2229b6ed4">OptimizePick::Data</a>
, <a class="el" href="structOpenMS_1_1TwoDOptimization_1_1Data.html#a5e129442f31432fc1dbb5d3573754012">TwoDOptimization::Data</a>
</li>
<li>positionScore_()
: <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a37daff803c85d8fa7e2ba173b3138d60">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a>
</li>
<li>PositionType
: <a class="el" href="classOpenMS_1_1Math_1_1AveragePosition.html#ac1f98dd5a1f6a9d6505298a2c6627674">AveragePosition< D ></a>
, <a class="el" href="classOpenMS_1_1ChromatogramPeak.html#a12b8b50c9639a9166153fbd19047edb3">ChromatogramPeak</a>
, <a class="el" href="classOpenMS_1_1DBoundingBox.html#a1e36c51b0d5ba975a90af51959755772">DBoundingBox< D ></a>
, <a class="el" href="classOpenMS_1_1Internal_1_1DIntervalBase.html#a49ac71825a631fc5537551e33ad4b72c">DIntervalBase< D ></a>
, <a class="el" href="classOpenMS_1_1DRange.html#a1e36c51b0d5ba975a90af51959755772">DRange< D ></a>
, <a class="el" href="classOpenMS_1_1Peak1D.html#a12b8b50c9639a9166153fbd19047edb3">Peak1D</a>
, <a class="el" href="classOpenMS_1_1Peak2D.html#ad26b57d1f922a709c513cf760f60e6fa">Peak2D</a>
, <a class="el" href="classOpenMS_1_1RangeManager.html#a49ac71825a631fc5537551e33ad4b72c">RangeManager< D ></a>
, <a class="el" href="classOpenMS_1_1BaseModel.html#a49ac71825a631fc5537551e33ad4b72c">BaseModel< D ></a>
, <a class="el" href="classOpenMS_1_1InterpolationModel.html#a12b8b50c9639a9166153fbd19047edb3">InterpolationModel</a>
, <a class="el" href="classOpenMS_1_1ProductModel_3_012_01_4.html#a49ac71825a631fc5537551e33ad4b72c">ProductModel< 2 ></a>
</li>
<li>POSITIVE
: <a class="el" href="classOpenMS_1_1IonSource.html#a84a045fa4024e050ca8be6d33311a054a03d440bbbfb042afc85347f994b44fb5">IonSource</a>
</li>
<li>possible_charge_states_
: <a class="el" href="classOpenMS_1_1Precursor.html#a4f6383e2df143b8c34ffb7ad8eae2c9b">Precursor</a>
</li>
<li>post_
: <a class="el" href="classOpenMS_1_1PeptideEvidence.html#abd5168b1b5df90f9598ac1aeee111e43">PeptideEvidence</a>
</li>
<li>post_moves
: <a class="el" href="structOpenMS_1_1Internal_1_1MappingParam.html#a437ddc3e3369f2d9f95aea2fdb3947b4">MappingParam</a>
</li>
<li>POSTACCELERATIONDETECTOR
: <a class="el" href="classOpenMS_1_1IonDetector.html#a1d1cfd8ffb84e947f82999c682b666a7ab853daddf114acf995e3486fe604e849">IonDetector</a>
</li>
<li>Postcondition()
: <a class="el" href="classOpenMS_1_1Exception_1_1Postcondition.html#a6a92d0dccf220c99e78ced3c9533de78">Postcondition</a>
</li>
<li>postDetectabilityHook()
: <a class="el" href="classOpenMS_1_1BaseLabeler.html#a3a4baf4c04e0c6bad29c5f2958d9c094">BaseLabeler</a>
, <a class="el" href="classOpenMS_1_1ICPLLabeler.html#afb6136a53321815a4ccab0c01642a306">ICPLLabeler</a>
, <a class="el" href="classOpenMS_1_1LabelFreeLabeler.html#afb6136a53321815a4ccab0c01642a306">LabelFreeLabeler</a>
, <a class="el" href="classOpenMS_1_1O18Labeler.html#afb6136a53321815a4ccab0c01642a306">O18Labeler</a>
, <a class="el" href="classOpenMS_1_1SILACLabeler.html#afb6136a53321815a4ccab0c01642a306">SILACLabeler</a>
, <a class="el" href="classOpenMS_1_1ITRAQLabeler.html#afb6136a53321815a4ccab0c01642a306">ITRAQLabeler</a>
</li>
<li>postDigestHook()
: <a class="el" href="classOpenMS_1_1ICPLLabeler.html#a4e2bc5baf58b7c0dcf27510809355115">ICPLLabeler</a>
, <a class="el" href="classOpenMS_1_1ITRAQLabeler.html#a4e2bc5baf58b7c0dcf27510809355115">ITRAQLabeler</a>
, <a class="el" href="classOpenMS_1_1LabelFreeLabeler.html#a4e2bc5baf58b7c0dcf27510809355115">LabelFreeLabeler</a>
, <a class="el" href="classOpenMS_1_1SILACLabeler.html#a4e2bc5baf58b7c0dcf27510809355115">SILACLabeler</a>
, <a class="el" href="classOpenMS_1_1O18Labeler.html#a4e2bc5baf58b7c0dcf27510809355115">O18Labeler</a>
, <a class="el" href="classOpenMS_1_1BaseLabeler.html#afa4bac3e0bd3d42fc1dca1a066c7c46e">BaseLabeler</a>
</li>
<li>PosteriorErrorProbabilityModel()
: <a class="el" href="classOpenMS_1_1Math_1_1PosteriorErrorProbabilityModel.html#ac95b04d8f0cbbffe4b738ea9b2bb59c9">PosteriorErrorProbabilityModel</a>
</li>
<li>postIonizationHook()
: <a class="el" href="classOpenMS_1_1BaseLabeler.html#a5e4bdc27fbdcfd37de0eff271a0a1778">BaseLabeler</a>
, <a class="el" href="classOpenMS_1_1ICPLLabeler.html#acf225fd7177ec90269aced5e520aba01">ICPLLabeler</a>
, <a class="el" href="classOpenMS_1_1ITRAQLabeler.html#acf225fd7177ec90269aced5e520aba01">ITRAQLabeler</a>
, <a class="el" href="classOpenMS_1_1LabelFreeLabeler.html#acf225fd7177ec90269aced5e520aba01">LabelFreeLabeler</a>
, <a class="el" href="classOpenMS_1_1SILACLabeler.html#acf225fd7177ec90269aced5e520aba01">SILACLabeler</a>
, <a class="el" href="classOpenMS_1_1O18Labeler.html#acf225fd7177ec90269aced5e520aba01">O18Labeler</a>
</li>
<li>postRawMSHook()
: <a class="el" href="classOpenMS_1_1BaseLabeler.html#a2a2d3d6ee40ed2050887ecd55e959f37">BaseLabeler</a>
, <a class="el" href="classOpenMS_1_1ICPLLabeler.html#a4fc3be969e53849728ce52fb0360aaf3">ICPLLabeler</a>
, <a class="el" href="classOpenMS_1_1LabelFreeLabeler.html#a4fc3be969e53849728ce52fb0360aaf3">LabelFreeLabeler</a>
, <a class="el" href="classOpenMS_1_1O18Labeler.html#a4fc3be969e53849728ce52fb0360aaf3">O18Labeler</a>
, <a class="el" href="classOpenMS_1_1SILACLabeler.html#a4fc3be969e53849728ce52fb0360aaf3">SILACLabeler</a>
, <a class="el" href="classOpenMS_1_1ITRAQLabeler.html#a4fc3be969e53849728ce52fb0360aaf3">ITRAQLabeler</a>
</li>
<li>postRawTandemMSHook()
: <a class="el" href="classOpenMS_1_1ICPLLabeler.html#a2c12d70a72694f6ac28c3150d623cecc">ICPLLabeler</a>
, <a class="el" href="classOpenMS_1_1ITRAQLabeler.html#a2c12d70a72694f6ac28c3150d623cecc">ITRAQLabeler</a>
, <a class="el" href="classOpenMS_1_1LabelFreeLabeler.html#a2c12d70a72694f6ac28c3150d623cecc">LabelFreeLabeler</a>
, <a class="el" href="classOpenMS_1_1O18Labeler.html#a2c12d70a72694f6ac28c3150d623cecc">O18Labeler</a>
, <a class="el" href="classOpenMS_1_1SILACLabeler.html#a2c12d70a72694f6ac28c3150d623cecc">SILACLabeler</a>
, <a class="el" href="classOpenMS_1_1BaseLabeler.html#a1d04088b5867c87f8da1cf3cdffd386b">BaseLabeler</a>
</li>
<li>postRTHook()
: <a class="el" href="classOpenMS_1_1BaseLabeler.html#a29264a786af342480b2fba9007bfa6a0">BaseLabeler</a>
, <a class="el" href="classOpenMS_1_1ICPLLabeler.html#ab14670be6db3b4f96ccb886900106733">ICPLLabeler</a>
, <a class="el" href="classOpenMS_1_1LabelFreeLabeler.html#ab14670be6db3b4f96ccb886900106733">LabelFreeLabeler</a>
, <a class="el" href="classOpenMS_1_1O18Labeler.html#ab14670be6db3b4f96ccb886900106733">O18Labeler</a>
, <a class="el" href="classOpenMS_1_1SILACLabeler.html#ab14670be6db3b4f96ccb886900106733">SILACLabeler</a>
, <a class="el" href="classOpenMS_1_1ITRAQLabeler.html#ab14670be6db3b4f96ccb886900106733">ITRAQLabeler</a>
</li>
<li>POSTTRANSLATIONAL
: <a class="el" href="classOpenMS_1_1ResidueModification.html#a2625255b968a6706fbd74639f92551bea057aaafc645139d79bf540bfc1330857">ResidueModification</a>
</li>
<li>potential_adducts_
: <a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#ac7727ba3f3253cf99751a2d64eb92582">FeatureDeconvolution</a>
</li>
<li>potential_target_
: <a class="el" href="classOpenMS_1_1TOPPASScene.html#a4532c1589e4e95c8dc97e7429ccd37c2">TOPPASScene</a>
</li>
<li>PPM
: <a class="el" href="classOpenMS_1_1XTandemInfile.html#a138ca2002a5af71819cd7b721dd0efb4ac271a6034e77f707fe192841a95de390">XTandemInfile</a>
</li>
<li>ppm_tolerance_
: <a class="el" href="classOpenMS_1_1GaussFilterAlgorithm.html#a57de10ac39744011aa8cce163dc87576">GaussFilterAlgorithm</a>
</li>
<li>ppmToleranceForMZClustering_
: <a class="el" href="classOpenMS_1_1SuperHirnParameters.html#ab8e9b6a9c41af9ae94233ce955873fb6">SuperHirnParameters</a>
</li>
<li>PQD
: <a class="el" href="classOpenMS_1_1Precursor.html#ade504dd839d796a10e9fc4d840952dc1a22a843b242764a6b3b320c1b26274433">Precursor</a>
</li>
<li>pre_
: <a class="el" href="classOpenMS_1_1PeptideEvidence.html#a1c9d4af4f3446043eb2b9fd84c91829f">PeptideEvidence</a>
, <a class="el" href="classOpenMS_1_1MultiGradient.html#a2a0e3898d196d289cd7707e9bc23652a">MultiGradient</a>
</li>
<li>PRE_32
: <a class="el" href="structOpenMS_1_1Internal_1_1MzMLHandler_1_1BinaryData.html#a385c44f6fb256e5716a2302a5b940388a45f0d43f4806f81088a4c80516b6a8bc">MzMLHandler< MapType >::BinaryData</a>
</li>
<li>PRE_64
: <a class="el" href="structOpenMS_1_1Internal_1_1MzMLHandler_1_1BinaryData.html#a385c44f6fb256e5716a2302a5b940388a288fa3219db91abed40546c0c9dde29c">MzMLHandler< MapType >::BinaryData</a>
</li>
<li>pre_min_
: <a class="el" href="classOpenMS_1_1MultiGradient.html#aea803412ce1d6ceb9ed1918061fa4d18">MultiGradient</a>
</li>
<li>pre_mod_name_
: <a class="el" href="classOpenMS_1_1Residue.html#a64f6288222ecef5c5d82349f51eed948">Residue</a>
</li>
<li>pre_moves
: <a class="el" href="structOpenMS_1_1Internal_1_1MappingParam.html#afeed662dd4cd556dbbea272a30f8aa43">MappingParam</a>
</li>
<li>PRE_NONE
: <a class="el" href="structOpenMS_1_1Internal_1_1MzMLHandler_1_1BinaryData.html#a385c44f6fb256e5716a2302a5b940388a4e84dda2309e9dfbb3b2300dd44ec145">MzMLHandler< MapType >::BinaryData</a>
</li>
<li>pre_scorer_
: <a class="el" href="classOpenMS_1_1PILISIdentification.html#a878b1bfa24edc6f4b6e8e86f874d3e7f">PILISIdentification</a>
</li>
<li>pre_size_
: <a class="el" href="classOpenMS_1_1MultiGradient.html#a3772dc9a499dd9d96a82ffce8b168cba">MultiGradient</a>
</li>
<li>pre_states_
: <a class="el" href="classOpenMS_1_1HMMState.html#a90e2c638fb49ac754accefd0017872bf">HMMState</a>
</li>
<li>pre_steps_
: <a class="el" href="classOpenMS_1_1MultiGradient.html#a6c79f2dc7c7ec6bb65f075783c036d5f">MultiGradient</a>
</li>
<li>precalculatedColorAt()
: <a class="el" href="classOpenMS_1_1MultiGradient.html#a766404ee04ca0e3dfd63851e25d18026">MultiGradient</a>
</li>
<li>precalculatedColorByIndex()
: <a class="el" href="classOpenMS_1_1MultiGradient.html#a155a7c2cce8c5dd078d75b7e7bad0b57">MultiGradient</a>
</li>
<li>precalculatedColorIndex()
: <a class="el" href="classOpenMS_1_1MultiGradient.html#aa7b0b32d0a3b6e619f396df53041aaec">MultiGradient</a>
</li>
<li>precalculatedColorIndex_()
: <a class="el" href="classOpenMS_1_1Spectrum2DCanvas.html#aa0c57561aaceffca9face3026ddd0473">Spectrum2DCanvas</a>
</li>
<li>precalculatedSize()
: <a class="el" href="classOpenMS_1_1MultiGradient.html#a095ed60a12759cde8cfaeaf700335a94">MultiGradient</a>
</li>
<li>preCheck()
: <a class="el" href="classOpenMS_1_1BaseLabeler.html#a5cb471ab0cfdfffa856efa13f48aff92">BaseLabeler</a>
, <a class="el" href="classOpenMS_1_1ICPLLabeler.html#ad312929bb6a8d1088428f0b61181135c">ICPLLabeler</a>
, <a class="el" href="classOpenMS_1_1ITRAQLabeler.html#ad312929bb6a8d1088428f0b61181135c">ITRAQLabeler</a>
, <a class="el" href="classOpenMS_1_1LabelFreeLabeler.html#ad312929bb6a8d1088428f0b61181135c">LabelFreeLabeler</a>
, <a class="el" href="classOpenMS_1_1SILACLabeler.html#a22c9cd0a7d1a445a5a3b258af7d61ea3">SILACLabeler</a>
, <a class="el" href="classOpenMS_1_1O18Labeler.html#ad312929bb6a8d1088428f0b61181135c">O18Labeler</a>
</li>
<li>precision
: <a class="el" href="structOpenMS_1_1Internal_1_1MzMLHandler_1_1BinaryData.html#af782cf31c1c251c2abb33b48ab6a8366">MzMLHandler< MapType >::BinaryData</a>
</li>
<li>precision_
: <a class="el" href="classOpenMS_1_1ims_1_1RealMassDecomposer.html#a71ff3ad8c781364519bb4062c3891311">RealMassDecomposer</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1MzXMLHandler.html#a11010cea213654791e0211426489563b">MzXMLHandler< MapType ></a>
, <a class="el" href="classOpenMS_1_1ims_1_1Weights.html#a21cad4bf777fee80a0eb8f58e4d275ca">Weights</a>
</li>
<li>precisions_
: <a class="el" href="classOpenMS_1_1Internal_1_1MzDataHandler.html#ac983ab0d4acb0c9fe2b4d80346588625">MzDataHandler< MapType ></a>
</li>
<li>PrecisionWrapper()
: <a class="el" href="structOpenMS_1_1PrecisionWrapper.html#aa86c282b93cd4a1d61cfa8b06c36ae5d">PrecisionWrapper< FloatingPointType ></a>
</li>
<li>preComputeExpensiveFunctions_()
: <a class="el" href="classOpenMS_1_1IsotopeWavelet.html#aad6111c62bad2800557843fab2810787">IsotopeWavelet</a>
</li>
<li>Precondition()
: <a class="el" href="classOpenMS_1_1Exception_1_1Precondition.html#a925ca8595edfe7692943d9674c3724c2">Precondition</a>
</li>
<li>PRECURSOR
: <a class="el" href="classOpenMS_1_1InstrumentSettings.html#af9e3bb003dab9b2cf00854a1eb3b01f0a8664157176347ebc7a0bfd5196498a8f">InstrumentSettings</a>
</li>
<li>Precursor()
: <a class="el" href="classOpenMS_1_1Precursor.html#a797f10d8d0e7dc573604a59098804896">Precursor</a>
</li>
<li>precursor
: <a class="el" href="structOpenMS_1_1TransitionTSVReader_1_1TSVTransition.html#a091384d6cb18a285bb576a2458269ce4">TransitionTSVReader::TSVTransition</a>
</li>
<li>Precursor()
: <a class="el" href="classOpenMS_1_1Precursor.html#ac9a278a285b207aeb2f33c0d395193a0">Precursor</a>
</li>
<li>precursor_
: <a class="el" href="classOpenMS_1_1ChromatogramSettings.html#ae02311afd3e7d41950bba9a06c308e09">ChromatogramSettings</a>
</li>
<li>precursor_charge
: <a class="el" href="structOpenMS_1_1TransitionTSVReader_1_1TSVTransition.html#a3b30ea6e2ab35c213e1769c2ce945cd5">TransitionTSVReader::TSVTransition</a>
</li>
<li>precursor_charge_
: <a class="el" href="classOpenMS_1_1SvmTheoreticalSpectrumGenerator.html#ab4f4b9381d8d1c6ede3ef66028cd6b42">SvmTheoreticalSpectrumGenerator</a>
</li>
<li>precursor_cv_terms_
: <a class="el" href="classOpenMS_1_1ReactionMonitoringTransition.html#abf2f3778c2de119a7ea7020577be32f6">ReactionMonitoringTransition</a>
, <a class="el" href="classOpenMS_1_1IncludeExcludeTarget.html#abf2f3778c2de119a7ea7020577be32f6">IncludeExcludeTarget</a>
</li>
<li>precursor_isolation_target
: <a class="el" href="structOpenMS_1_1Interfaces_1_1ChromatogramMeta.html#a53a56bd488aa925a995fdac007e777b9">ChromatogramMeta</a>
</li>
<li>precursor_lower_mz_
: <a class="el" href="classOpenMS_1_1XTandemInfile.html#aeff9ec6176c20ae0eae0ec7301d606a4">XTandemInfile</a>
</li>
<li>precursor_mass_error_unit_
: <a class="el" href="classOpenMS_1_1XTandemInfile.html#a3081e522548f77c057fd1fabf0fa8366">XTandemInfile</a>
</li>
<li>precursor_mass_tolerance_
: <a class="el" href="classOpenMS_1_1SequestInfile.html#a17921ca118ae3d8d972b748147f5ef6b">SequestInfile</a>
, <a class="el" href="classOpenMS_1_1InspectInfile.html#a17921ca118ae3d8d972b748147f5ef6b">InspectInfile</a>
, <a class="el" href="classOpenMS_1_1MascotInfile.html#a17921ca118ae3d8d972b748147f5ef6b">MascotInfile</a>
, <a class="el" href="classOpenMS_1_1CompNovoIdentificationCID.html#a36e336df104f8cf14a637dddc696d1c5">CompNovoIdentificationCID</a>
</li>
<li>precursor_mass_tolerance_minus_
: <a class="el" href="classOpenMS_1_1XTandemInfile.html#a7b8ddc890668c3e64281c06106e5569d">XTandemInfile</a>
</li>
<li>precursor_mass_tolerance_plus_
: <a class="el" href="classOpenMS_1_1XTandemInfile.html#aca7dd9843d0f65c30077f53d5e56c2c3">XTandemInfile</a>
</li>
<li>precursor_mass_type_
: <a class="el" href="classOpenMS_1_1XTandemInfile.html#adcdbf79d5d94972659840cea41217b28">XTandemInfile</a>
</li>
<li>precursor_model_cd_
: <a class="el" href="classOpenMS_1_1PILISModel.html#a0466fe7e46a643eff23d4c18a5f73109">PILISModel</a>
</li>
<li>precursor_model_cr_
: <a class="el" href="classOpenMS_1_1PILISModel.html#ab2e7eaa60e55467678b4a5c242149e3f">PILISModel</a>
</li>
<li>precursor_mz
: <a class="el" href="structOpenSwath_1_1LightTransition.html#afa3afc97b8498c42fc5278bef3b5c1bd">LightTransition</a>
</li>
<li>precursor_mz_
: <a class="el" href="classOpenMS_1_1ReactionMonitoringTransition.html#a4633d73bbd08d505b0d85f50795ebf36">ReactionMonitoringTransition</a>
, <a class="el" href="classOpenMS_1_1IncludeExcludeTarget.html#a4633d73bbd08d505b0d85f50795ebf36">IncludeExcludeTarget</a>
</li>
<li>PRECURSOR_RECALCULATION
: <a class="el" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9a2ca454d58033fd433df401a2406fb173">DataProcessing</a>
</li>
<li>precursor_tolerance
: <a class="el" href="structOpenMS_1_1ProteinIdentification_1_1SearchParameters.html#a9665390243976d08d254b1d2e83876ad">ProteinIdentification::SearchParameters</a>
</li>
<li>precursor_tolerance_
: <a class="el" href="classOpenMS_1_1ProteinIdentificationVisualizer.html#aebf19b99a80f72842e0e0b6bfbf8485b">ProteinIdentificationVisualizer</a>
</li>
<li>precursorCHRG
: <a class="el" href="classOpenMS_1_1MS2Fragment.html#ac4c908426d75fa4b3d4b0730ec640d7a">MS2Fragment</a>
</li>
<li>PrecursorIonSelection()
: <a class="el" href="classOpenMS_1_1PrecursorIonSelection.html#a2d3d5a0fafc2571f619b2feb66505b2c">PrecursorIonSelection</a>
</li>
<li>PrecursorIonSelectionPreprocessing()
: <a class="el" href="classOpenMS_1_1PrecursorIonSelectionPreprocessing.html#ab75aadc8747ba8407e872fff860ba5f7">PrecursorIonSelectionPreprocessing</a>
</li>
<li>precursorMass
: <a class="el" href="classOpenMS_1_1MSPeak.html#a85cc30eb30796cc2250d15a7f7fb67d2">MSPeak</a>
</li>
<li>precursorMZ
: <a class="el" href="classOpenMS_1_1MS2ConsensusSpectrum.html#ac5b7a45b97e2838a2f716fec5b5debe0">MS2ConsensusSpectrum</a>
, <a class="el" href="classOpenMS_1_1MS2Fragment.html#ac5b7a45b97e2838a2f716fec5b5debe0">MS2Fragment</a>
, <a class="el" href="classOpenMS_1_1MSPeak.html#ac5b7a45b97e2838a2f716fec5b5debe0">MSPeak</a>
</li>
<li>precursors_
: <a class="el" href="classOpenMS_1_1SpectrumSettings.html#ad42442a0cfa9eb4f410488dce0f352b5">SpectrumSettings</a>
</li>
<li>PrecursorVisualizer()
: <a class="el" href="classOpenMS_1_1PrecursorVisualizer.html#af615ebe80f76fa97ba7f4cfbc913fde4">PrecursorVisualizer</a>
</li>
<li>predict()
: <a class="el" href="classOpenMS_1_1PeakIntensityPredictor.html#a314932ca8882fe700bff601e89e90f97">PeakIntensityPredictor</a>
, <a class="el" href="classOpenMS_1_1SVMWrapper.html#ab9de1897df21148397d83cfe1a9d79ee">SVMWrapper</a>
, <a class="el" href="classOpenMS_1_1PeakIntensityPredictor.html#aa762089eb35938ea2d0c41f22864919f">PeakIntensityPredictor</a>
, <a class="el" href="classOpenMS_1_1SVMWrapper.html#a0cc6a779bee87dcfbf29da68a174758e">SVMWrapper</a>
</li>
<li>predictContaminantsRT()
: <a class="el" href="classOpenMS_1_1RTSimulation.html#a0f66312fff6e3881b6384ed786cfffce">RTSimulation</a>
</li>
<li>predictDetectabilities()
: <a class="el" href="classOpenMS_1_1DetectabilitySimulation.html#ad61a27165ee9c43d1524e5c036207b9a">DetectabilitySimulation</a>
</li>
<li>Prediction
: <a class="el" href="classOpenMS_1_1ReactionMonitoringTransition.html#a68ebd15670364c76c9fa8ebcfd725217">ReactionMonitoringTransition</a>
, <a class="el" href="structOpenMS_1_1TargetedExperimentHelper_1_1Prediction.html#a70840f97211401de3f953effbf4a3756">Prediction</a>
, <a class="el" href="classOpenMS_1_1TargetedExperiment.html#a68ebd15670364c76c9fa8ebcfd725217">TargetedExperiment</a>
</li>
<li>prediction_
: <a class="el" href="classOpenMS_1_1IncludeExcludeTarget.html#af08d137f47a645c50a28be49f463b8c8">IncludeExcludeTarget</a>
, <a class="el" href="classOpenMS_1_1ReactionMonitoringTransition.html#af768937780b397bfaa350b8bbd302f58">ReactionMonitoringTransition</a>
</li>
<li>predictRT()
: <a class="el" href="classOpenMS_1_1RTSimulation.html#a127b17b4ac01a548052f7c1fac05f11b">RTSimulation</a>
</li>
<li>preferencesChange()
: <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#ac97f6fbd4321a24c4d6fef02c03f3ce7">SpectrumCanvas</a>
</li>
<li>preferencesDialog()
: <a class="el" href="classOpenMS_1_1TOPPViewBase.html#af51e5796d9cbf0a727839fa4585a0a03">TOPPViewBase</a>
, <a class="el" href="classOpenMS_1_1TOPPASBase.html#af51e5796d9cbf0a727839fa4585a0a03">TOPPASBase</a>
</li>
<li>prefix
: <a class="el" href="structOpenMS_1_1Logger_1_1LogStreamBuf_1_1StreamStruct.html#a78fb15511f687fe7fdb8e3ba9613648b">LogStreamBuf::StreamStruct</a>
, <a class="el" href="classOpenMS_1_1String.html#a3b68228d65702a6a614e8e4226d25b8d">String</a>
, <a class="el" href="structOpenMS_1_1FuzzyStringComparator_1_1PrefixInfo__.html#ac0f397b7c10467ea4ec9c3c5a6e9f53f">FuzzyStringComparator::PrefixInfo_</a>
, <a class="el" href="classOpenMS_1_1String.html#a5dc7044c69fbc95377f6bf41f54805ad">String</a>
</li>
<li>prefix_whitespaces
: <a class="el" href="structOpenMS_1_1FuzzyStringComparator_1_1PrefixInfo__.html#a788c8c669525beabf185bddad1e90227">FuzzyStringComparator::PrefixInfo_</a>
</li>
<li>PrefixInfo_()
: <a class="el" href="structOpenMS_1_1FuzzyStringComparator_1_1PrefixInfo__.html#ac9c39175fc0182f7df9c20c9553ff342">FuzzyStringComparator::PrefixInfo_</a>
</li>
<li>prepareAlign_()
: <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithmSpectrumAlignment.html#a028b9561e7458f15cc08cba7238118b7">MapAlignmentAlgorithmSpectrumAlignment</a>
</li>
<li>prepareFit_()
: <a class="el" href="classOpenMS_1_1EmgScoring.html#a38a8356e73763a34e70aa5fad809eba0">EmgScoring</a>
</li>
<li>prepareHRDataCuda()
: <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmIsotopeWavelet.html#a512f34fae6d03198dea390c33e52e75d">FeatureFinderAlgorithmIsotopeWavelet< PeakType, FeatureType ></a>
</li>
<li>prepareMasterContainer_()
: <a class="el" href="classOpenMS_1_1MRMTransitionGroupPicker.html#abcb96765de1c995e5d9ef3d517682cad">MRMTransitionGroupPicker</a>
</li>
<li>prepareResize()
: <a class="el" href="classOpenMS_1_1TOPPASEdge.html#a24f8ff5b6687aee25f75aa3c2ab20eb2">TOPPASEdge</a>
</li>
<li>prepareSpectra_()
: <a class="el" href="classOpenMS_1_1ChromatogramExtractor.html#acc6dd6bb5820778b452b8adf9334421e">ChromatogramExtractor</a>
</li>
<li>preprocess()
: <a class="el" href="classOpenMS_1_1SpectraSTSimilarityScore.html#a13d13d8f85b36a4b74e56ce84dea187f">SpectraSTSimilarityScore</a>
</li>
<li>preprocessing_tech
: <a class="el" href="structOpenMS_1_1LPWrapper_1_1SolverParam.html#adbfb44890c06ef3f0f9caa4ef00830d7">LPWrapper::SolverParam</a>
</li>
<li>pressure_
: <a class="el" href="classOpenMS_1_1HPLC.html#ace530ca97c8a40925f00d4dbba96971e">HPLC</a>
</li>
<li>PRETRANSLATIONAL
: <a class="el" href="classOpenMS_1_1ResidueModification.html#a2625255b968a6706fbd74639f92551bea892027784681cca61a57fb4e35484342">ResidueModification</a>
</li>
<li>PREV_AA
: <a class="el" href="classOpenMS_1_1MS2Info.html#a59c156ab9f95cfa059025e38df632bbe">MS2Info</a>
</li>
<li>primary
: <a class="el" href="structOpenMS_1_1ProteinResolver_1_1ProteinEntry.html#a7aead736a07eaf25623ad7bfa1f0ee2daaf39953ed4d6da246e0023b55ead6887">ProteinResolver::ProteinEntry</a>
</li>
<li>primary_indistinguishable
: <a class="el" href="structOpenMS_1_1ProteinResolver_1_1ProteinEntry.html#a7aead736a07eaf25623ad7bfa1f0ee2dae4d1d812ce59ffec05ce6a4eeb3295e8">ProteinResolver::ProteinEntry</a>
</li>
<li>primary_scan_regex
: <a class="el" href="classOpenMS_1_1Internal_1_1MascotXMLHandler.html#ae69cc55a2b148fffca769bfda6772e0d">MascotXMLHandler</a>
</li>
<li>primaryProteins_()
: <a class="el" href="classOpenMS_1_1ProteinResolver.html#a8220c410ff2ecf53cc3332f181dc9937">ProteinResolver</a>
</li>
<li>print()
: <a class="el" href="classOpenMS_1_1SparseVector.html#a3a3ab31c19c38fe926198ddc4a0a4a91">SparseVector< Value ></a>
</li>
<li>print_duplicate_references_
: <a class="el" href="classOpenMS_1_1SequestInfile.html#abda497ef7a71f331ddc72063975a877e">SequestInfile</a>
</li>
<li>print_profile()
: <a class="el" href="classOpenMS_1_1LCElutionPeak.html#a7c3497bc7ff500849613d5fb30de1274">LCElutionPeak</a>
</li>
<li>printEdgesOfConnectedFeatures_()
: <a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#ae6a5684488808821b534f35c6f6b7b9e">FeatureDeconvolution</a>
</li>
<li>printState_()
: <a class="el" href="classOpenMS_1_1Math_1_1GaussFitter.html#a75f8cd8be36d38070f3b68b9503f6744">GaussFitter</a>
, <a class="el" href="classOpenMS_1_1EGHFitter1D.html#ae38551e1b1b47cb33cd5ae6aceb1f289">EGHFitter1D</a>
, <a class="el" href="classOpenMS_1_1EmgFitter1D.html#ae38551e1b1b47cb33cd5ae6aceb1f289">EmgFitter1D</a>
, <a class="el" href="classOpenMS_1_1LevMarqFitter1D.html#aa87519a3793e8b3e38e7d3f1a0a41025">LevMarqFitter1D</a>
, <a class="el" href="classOpenMS_1_1GaussTraceFitter.html#a5a6c5cb5c3bbe8cf2c2b7aa4639667bb">GaussTraceFitter< PeakType ></a>
, <a class="el" href="classOpenMS_1_1TraceFitter.html#aa392ac4217e565f35cfe6ec42edd4e19">TraceFitter< PeakType ></a>
, <a class="el" href="classOpenMS_1_1LmaGaussFitter1D.html#ae38551e1b1b47cb33cd5ae6aceb1f289">LmaGaussFitter1D</a>
, <a class="el" href="classOpenMS_1_1LmaIsotopeFitter1D.html#ae38551e1b1b47cb33cd5ae6aceb1f289">LmaIsotopeFitter1D</a>
, <a class="el" href="classOpenMS_1_1EGHTraceFitter.html#a5a6c5cb5c3bbe8cf2c2b7aa4639667bb">EGHTraceFitter< PeakType ></a>
, <a class="el" href="classOpenMS_1_1Math_1_1GumbelDistributionFitter.html#a75f8cd8be36d38070f3b68b9503f6744">GumbelDistributionFitter</a>
, <a class="el" href="classOpenMS_1_1Math_1_1GammaDistributionFitter.html#a75f8cd8be36d38070f3b68b9503f6744">GammaDistributionFitter</a>
</li>
<li>printStatistic()
: <a class="el" href="classOpenMS_1_1SuffixArrayTrypticCompressed.html#af51327da313f22aa8cb1abebb11cebe5">SuffixArrayTrypticCompressed</a>
, <a class="el" href="classOpenMS_1_1SuffixArray.html#a85e900bc7d60e593b51054ae7ebf72ea">SuffixArray</a>
, <a class="el" href="classOpenMS_1_1SuffixArraySeqan.html#af51327da313f22aa8cb1abebb11cebe5">SuffixArraySeqan</a>
</li>
<li>printToVoid_()
: <a class="el" href="classOpenMS_1_1SVMWrapper.html#a080edc511e275497258ccd2d55933027">SVMWrapper</a>
</li>
<li>printUsage_()
: <a class="el" href="classOpenMS_1_1TOPPBase.html#a48067d9b286e137c0e1a5e7a5ce3ebfc">TOPPBase</a>
</li>
<li>priorities_
: <a class="el" href="classOpenMS_1_1SimpleExtender.html#a9d351425833907a2744bbfa08ef60c3e">SimpleExtender< PeakType, FeatureType ></a>
</li>
<li>priority
: <a class="el" href="structOpenMS_1_1SimpleExtender_1_1IndexWithPriority.html#ae138c9d8b5236dce0ba0250360815ee4">SimpleExtender< PeakType, FeatureType >::IndexWithPriority</a>
</li>
<li>priority_threshold_
: <a class="el" href="classOpenMS_1_1SimpleExtender.html#a20f835e907d9386f5ba2a89f14c3734c">SimpleExtender< PeakType, FeatureType ></a>
</li>
<li>privvec
: <a class="el" href="classOpenMS_1_1ConsensusMap.html#af05c3613b1411d927984b2e59cb58353">ConsensusMap</a>
, <a class="el" href="classOpenMS_1_1FeatureMap.html#a0aea291cfaf950725ecd637c801a94e7">FeatureMap< FeatureT ></a>
</li>
<li>pro_id_
: <a class="el" href="classOpenMS_1_1Internal_1_1MzIdentMLHandler.html#a76323913576f0692264bd3a3ae0d5156">MzIdentMLHandler</a>
</li>
<li>probabilities_
: <a class="el" href="classOpenMS_1_1PSProteinInference.html#a7d48d1ed1026fb697b8eb66612d84f24">PSProteinInference</a>
</li>
<li>probability
: <a class="el" href="structOpenMS_1_1ProteinIdentification_1_1ProteinGroup.html#abb040260f33bb7404c0f2854d3a778d2">ProteinIdentification::ProteinGroup</a>
</li>
<li>PROBABILITY
: <a class="el" href="classOpenMS_1_1SVMWrapper.html#a7441ce49ab2547572d9203c1b22d72f7a75e0d9a230aa82a7e53939b27afc576a">SVMWrapper</a>
</li>
<li>probability_container
: <a class="el" href="classOpenMS_1_1Math_1_1BasicStatistics.html#ab5a4bda0d413bc762ab9516542d5e1a4">BasicStatistics< RealT ></a>
</li>
<li>ProbabilityType
: <a class="el" href="classOpenMS_1_1SimpleExtender.html#a148f3853784fb91146ee0a2c97fbe152">SimpleExtender< PeakType, FeatureType ></a>
</li>
<li>proc
: <a class="el" href="structOpenMS_1_1TOPPASScene_1_1TOPPProcess.html#ae1967dafb032752ce64bea2b04a8aaca">TOPPASScene::TOPPProcess</a>
</li>
<li>process
: <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a34f478480833f630c4670430e7e562e9">TOPPViewBase</a>
</li>
<li>process_MS1_level_data_structure()
: <a class="el" href="classOpenMS_1_1FTPeakDetectController.html#a229cf7adfeaf894760aca04fe6f4b102">FTPeakDetectController</a>
</li>
<li>process_MS2_level_data_structure()
: <a class="el" href="classOpenMS_1_1FTPeakDetectController.html#a72607b2a63d8ed4d365a0bec44bd7e19">FTPeakDetectController</a>
</li>
<li>ProcessData()
: <a class="el" href="classOpenMS_1_1ProcessData.html#a100f97803b72565daedee80e34bbb7f0">ProcessData</a>
</li>
<li>processFinished()
: <a class="el" href="classOpenMS_1_1TOPPASScene.html#a45eeeadeeeca4bdeee03ee65da1fbf56">TOPPASScene</a>
</li>
<li>processing_
: <a class="el" href="classOpenMS_1_1Internal_1_1MzMLHandler.html#afea2047eedc730597ab0a7bb9c92c551">MzMLHandler< MapType ></a>
</li>
<li>processing_actions_
: <a class="el" href="classOpenMS_1_1DataProcessing.html#ae5198acc04f169ea72acaeef93ef043c">DataProcessing</a>
</li>
<li>ProcessingAction
: <a class="el" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9">DataProcessing</a>
</li>
<li>processIntensities()
: <a class="el" href="classOpenMS_1_1BackgroundIntensityBin.html#a2aa7198c9292e49b139d295a7ef462c4">BackgroundIntensityBin</a>
</li>
<li>processIntensityMaps()
: <a class="el" href="classOpenMS_1_1BackgroundControl.html#a94c02df45196b9606c93ba253b2c8ef3">BackgroundControl</a>
</li>
<li>processMSPeaks()
: <a class="el" href="classOpenMS_1_1ProcessData.html#a232e06f90ac4f0b5aa9ab315f3171e33">ProcessData</a>
</li>
<li>processMZFeatureVector()
: <a class="el" href="classOpenMS_1_1MS1FeatureMerger.html#a02a372f6e5c4d7f845ad833e566babc8">MS1FeatureMerger</a>
</li>
<li>prod_
: <a class="el" href="classOpenMS_1_1IsotopeWaveletTransform.html#a351c3421c18beee6793b76530d89c4be">IsotopeWaveletTransform< PeakType ></a>
</li>
<li>Product()
: <a class="el" href="classOpenMS_1_1Product.html#abf4a40c2b758c2d7863d6abe0f4e3255">Product</a>
, <a class="el" href="classOpenMS_1_1ReactionMonitoringTransition.html#acbb269c59859565e09950ed863ab4ff5">ReactionMonitoringTransition</a>
, <a class="el" href="classOpenMS_1_1Product.html#ace923930b5364da1057a57bbe7010ef8">Product</a>
</li>
<li>product
: <a class="el" href="structOpenMS_1_1TransitionTSVReader_1_1TSVTransition.html#ab66cac0e7f27427fab6540dff47a7e2a">TransitionTSVReader::TSVTransition</a>
</li>
<li>product_
: <a class="el" href="classOpenMS_1_1ReactionMonitoringTransition.html#a51f0a1229789882c11ea8618290e26c8">ReactionMonitoringTransition</a>
, <a class="el" href="classOpenMS_1_1ChromatogramSettings.html#a51f0a1229789882c11ea8618290e26c8">ChromatogramSettings</a>
</li>
<li>product_cv_terms_
: <a class="el" href="classOpenMS_1_1IncludeExcludeTarget.html#a0753985737050c9bacd58235470710bd">IncludeExcludeTarget</a>
</li>
<li>product_isolation_target
: <a class="el" href="structOpenMS_1_1Interfaces_1_1ChromatogramMeta.html#afe66ac7e467c22623eb14059a352ad02">ChromatogramMeta</a>
</li>
<li>product_mz
: <a class="el" href="structOpenSwath_1_1LightTransition.html#a8f2ba8e26d9bad2f8043367d954a0c72">LightTransition</a>
</li>
<li>product_mz_
: <a class="el" href="classOpenMS_1_1ProductVisualizer.html#af3eac297ccbaf1fec9df8616d1c6a751">ProductVisualizer</a>
, <a class="el" href="classOpenMS_1_1IncludeExcludeTarget.html#a8b7579af9e80d69137da78218a888c02">IncludeExcludeTarget</a>
</li>
<li>product_window_low_
: <a class="el" href="classOpenMS_1_1ProductVisualizer.html#ac3d34a52b917c6eab7f2e55ab181aae1">ProductVisualizer</a>
</li>
<li>product_window_up_
: <a class="el" href="classOpenMS_1_1ProductVisualizer.html#a50a318b6c84d23c5f637e9fad324100a">ProductVisualizer</a>
</li>
<li>ProductListType
: <a class="el" href="classOpenMS_1_1Internal_1_1TraMLHandler.html#a50ebcf434b59ba84992d03316e3a1628">TraMLHandler</a>
</li>
<li>ProductModel()
: <a class="el" href="classOpenMS_1_1ProductModel_3_012_01_4.html#aaa41960760833fe9b442209fa783b621">ProductModel< 2 ></a>
</li>
<li>products_
: <a class="el" href="classOpenMS_1_1SpectrumSettings.html#aef6df6cd8243daa6d2d9474aa876c36c">SpectrumSettings</a>
</li>
<li>ProductVisualizer()
: <a class="el" href="classOpenMS_1_1ProductVisualizer.html#ab06bccbbb32ae0734c0ece76f3537df4">ProductVisualizer</a>
</li>
<li>profileIntensities_
: <a class="el" href="classOpenMS_1_1RawData.html#a3a06bd311417a22494b678e07a220961">RawData</a>
</li>
<li>profileMasses_
: <a class="el" href="classOpenMS_1_1RawData.html#a623949376de3b936c83a645a66d4121e">RawData</a>
</li>
<li>PROFILESHAPE
: <a class="el" href="classOpenMS_1_1RawMSSignalSimulation.html#a118b7b87c79b44b10112206841e9fa99">RawMSSignalSimulation</a>
</li>
<li>progress_
: <a class="el" href="classOpenMS_1_1QcMLFile.html#a8e17f7a3517f0ea0f31fd4c9d7608e3c">QcMLFile</a>
, <a class="el" href="classOpenMS_1_1ConsensusXMLFile.html#a8e17f7a3517f0ea0f31fd4c9d7608e3c">ConsensusXMLFile</a>
, <a class="el" href="classOpenMS_1_1SuffixArrayTrypticCompressed.html#af98080eb757ac4ee1faa0c2b879a444f">SuffixArrayTrypticCompressed</a>
</li>
<li>progress_counter_
: <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmIsotopeWavelet.html#a10c429e143b68ec85d225b005e0d752c">FeatureFinderAlgorithmIsotopeWavelet< PeakType, FeatureType ></a>
</li>
<li>ProgressLogger()
: <a class="el" href="classOpenMS_1_1ProgressLogger.html#a2a106011aec95b2013d7a545f2063d01">ProgressLogger</a>
</li>
<li>projection_box_
: <a class="el" href="classOpenMS_1_1Spectrum2DWidget.html#ac4f9b586b38729744f5efb2538c057ed">Spectrum2DWidget</a>
</li>
<li>projection_horz_
: <a class="el" href="classOpenMS_1_1Spectrum2DWidget.html#a5972aa8b49dd8dd90e91a4b0ebffe8ee">Spectrum2DWidget</a>
</li>
<li>projection_max_
: <a class="el" href="classOpenMS_1_1Spectrum2DWidget.html#a96e5409890ad5c652a4f0e43625cc5dd">Spectrum2DWidget</a>
</li>
<li>projection_mz_
: <a class="el" href="classOpenMS_1_1Spectrum2DCanvas.html#afb7285cfe069339169b2c28a03073eec">Spectrum2DCanvas</a>
</li>
<li>projection_peaks_
: <a class="el" href="classOpenMS_1_1Spectrum2DWidget.html#ad66ccd2258e2805e982bdd52d534f35b">Spectrum2DWidget</a>
</li>
<li>projection_rt_
: <a class="el" href="classOpenMS_1_1Spectrum2DCanvas.html#a30487d3dffa1a0ab85a82f9522332a17">Spectrum2DCanvas</a>
</li>
<li>projection_sum_
: <a class="el" href="classOpenMS_1_1Spectrum2DWidget.html#a5d12dea9e580baccf3186e38a65a7bce">Spectrum2DWidget</a>
</li>
<li>projection_vert_
: <a class="el" href="classOpenMS_1_1Spectrum2DWidget.html#af7481dc49ef2cbf8be4f2d2c07f78650">Spectrum2DWidget</a>
</li>
<li>projectionInfo()
: <a class="el" href="classOpenMS_1_1Spectrum2DWidget.html#af2808176875e83a5ba0ff35b6597f4cd">Spectrum2DWidget</a>
</li>
<li>projections_2d_
: <a class="el" href="classOpenMS_1_1TOPPViewBase.html#ab2df52d724fe0b69ff3e491f323d405c">TOPPViewBase</a>
</li>
<li>projections_auto_
: <a class="el" href="classOpenMS_1_1Spectrum2DWidget.html#a89db04e88dea91127598ccbaeed71de3">Spectrum2DWidget</a>
</li>
<li>projections_timer_
: <a class="el" href="classOpenMS_1_1Spectrum2DWidget.html#a6f39e79b148cf0c760cf91d01ced4e8e">Spectrum2DWidget</a>
</li>
<li>projectionsVisible()
: <a class="el" href="classOpenMS_1_1Spectrum2DWidget.html#a8353cb9e7e2456449e606bac0f8c1264">Spectrum2DWidget</a>
</li>
<li>PROPORTIONAL
: <a class="el" href="classOpenMS_1_1MassAnalyzer.html#a34bdf8df14c74a4beb0f343aa8141e60ad35adb33a4bd3162eff7f960ea0ad37a">MassAnalyzer</a>
</li>
<li>proportionsActivated()
: <a class="el" href="classOpenMS_1_1SaveImageDialog.html#ad6c5b52753970807af6285dc91094417">SaveImageDialog</a>
</li>
<li>prot_acc
: <a class="el" href="structOpenMS_1_1PSLPFormulation_1_1IndexTriple.html#a24b2e6838da320481d4725b945c06e1f">PSLPFormulation::IndexTriple</a>
</li>
<li>prot_dist_
: <a class="el" href="classOpenMS_1_1PILISModel.html#a4dfbdb017bcdf678b0aefe87e0deabb1">PILISModel</a>
</li>
<li>prot_hit_
: <a class="el" href="classOpenMS_1_1IdXMLFile.html#a855d1cd159f5a8295c3d6be4327a1542">IdXMLFile</a>
, <a class="el" href="classOpenMS_1_1ConsensusXMLFile.html#a855d1cd159f5a8295c3d6be4327a1542">ConsensusXMLFile</a>
, <a class="el" href="classOpenMS_1_1FeatureXMLFile.html#a855d1cd159f5a8295c3d6be4327a1542">FeatureXMLFile</a>
</li>
<li>prot_id_
: <a class="el" href="classOpenMS_1_1PepXMLFile.html#a9e325af3cdc9e77753f1042b18c6676f">PepXMLFile</a>
, <a class="el" href="classOpenMS_1_1FeatureXMLFile.html#a5e548fc9726de1f64e315fa215f4de19">FeatureXMLFile</a>
, <a class="el" href="classOpenMS_1_1ConsensusXMLFile.html#a5e548fc9726de1f64e315fa215f4de19">ConsensusXMLFile</a>
, <a class="el" href="classOpenMS_1_1IdXMLFile.html#a5e548fc9726de1f64e315fa215f4de19">IdXMLFile</a>
, <a class="el" href="classOpenMS_1_1ProtXMLFile.html#a5f09c2d23321bc7c46d4ba5982e55719">ProtXMLFile</a>
</li>
<li>prot_id_counter_
: <a class="el" href="classOpenMS_1_1PrecursorIonSelection.html#ae7c765448d55eedc24f212e92602a8ec">PrecursorIonSelection</a>
</li>
<li>prot_id_in_run_
: <a class="el" href="classOpenMS_1_1IdXMLFile.html#aa8fc01225ead07dcda50ddcab21752cb">IdXMLFile</a>
</li>
<li>prot_ids_
: <a class="el" href="classOpenMS_1_1IdXMLFile.html#a227048b3da58e135b72a46471d4ef9b9">IdXMLFile</a>
</li>
<li>prot_masses_
: <a class="el" href="classOpenMS_1_1PrecursorIonSelectionPreprocessing.html#a97d70ff4c6caec4374a3190c066a0baf">PrecursorIonSelectionPreprocessing</a>
</li>
<li>prot_peptide_seq_map_
: <a class="el" href="classOpenMS_1_1PrecursorIonSelectionPreprocessing.html#a1621889f0246a22818553ab766b366f9">PrecursorIonSelectionPreprocessing</a>
</li>
<li>prot_quant_
: <a class="el" href="classOpenMS_1_1PeptideAndProteinQuant.html#af075fa02d32cdcabfb6de54142f9d3ca">PeptideAndProteinQuant</a>
</li>
<li>PROTEASE_K
: <a class="el" href="classOpenMS_1_1ProteinIdentification.html#ac1976fd756a09ae4e26fe6b32fcb396ca3b5e4efa6ca1ae00905ead21fe2c1e73">ProteinIdentification</a>
</li>
<li>Protein()
: <a class="el" href="structOpenMS_1_1TargetedExperimentHelper_1_1Protein.html#a928c956fd48fac5349a5d34b1e09ee65">Protein</a>
, <a class="el" href="classOpenMS_1_1TargetedExperiment.html#a6be5011e53737493e15d175f5d4a1d03">TargetedExperiment</a>
</li>
<li>protein_abundance_std_error_sub
: <a class="el" href="structOpenMS_1_1MzTabProteinSectionRow.html#a72de935a9fb482612153431f0003e63e">MzTabProteinSectionRow</a>
</li>
<li>protein_abundance_stdev_sub
: <a class="el" href="structOpenMS_1_1MzTabProteinSectionRow.html#a52eea457cfc520743a3ba2147db11df2">MzTabProteinSectionRow</a>
</li>
<li>protein_abundance_sub
: <a class="el" href="structOpenMS_1_1MzTabProteinSectionRow.html#afddd582779404db1a3953b0b1a065a8c">MzTabProteinSectionRow</a>
</li>
<li>protein_coverage
: <a class="el" href="structOpenMS_1_1MzTabProteinSectionRow.html#a17d59ce299736e8e2eb98cd286b7aead">MzTabProteinSectionRow</a>
</li>
<li>protein_data_
: <a class="el" href="classOpenMS_1_1ProteinResolver.html#adbb6932604b6b4a6f5dc6526cc2c9048">ProteinResolver</a>
</li>
<li>protein_entries
: <a class="el" href="structOpenMS_1_1ProteinResolver_1_1ResolverResult.html#a98eb6122f1f05819a3b85287ac5435c0">ProteinResolver::ResolverResult</a>
</li>
<li>protein_group_
: <a class="el" href="classOpenMS_1_1ProtXMLFile.html#a9860f82767d8899fb0414825b86c5e15">ProtXMLFile</a>
</li>
<li>protein_groups_
: <a class="el" href="classOpenMS_1_1ProteinIdentification.html#ad8740a5936ee7eecd38542b9130f4b93">ProteinIdentification</a>
</li>
<li>protein_hits_
: <a class="el" href="classOpenMS_1_1XTandemXMLFile.html#ae3e1a50f18b3783c7403e2bdba116115">XTandemXMLFile</a>
, <a class="el" href="classOpenMS_1_1ProteinIdentification.html#a5a059567f3e766f14ee245d880454e7c">ProteinIdentification</a>
</li>
<li>protein_identification_
: <a class="el" href="classOpenMS_1_1XTandemXMLFile.html#a06b27f556a6afd22c4753c6ab2d4fb32">XTandemXMLFile</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1MascotXMLHandler.html#ad7e41c17634f004ae1088633302eb41d">MascotXMLHandler</a>
</li>
<li>protein_identifications_
: <a class="el" href="classOpenMS_1_1ConsensusMap.html#ad9d205c1045bb7a3b829070054db706f">ConsensusMap</a>
, <a class="el" href="classOpenMS_1_1ExperimentalSettings.html#ad9d205c1045bb7a3b829070054db706f">ExperimentalSettings</a>
, <a class="el" href="classOpenMS_1_1FeatureMap.html#ad9d205c1045bb7a3b829070054db706f">FeatureMap< FeatureT ></a>
</li>
<li>protein_mass_filter_
: <a class="el" href="classOpenMS_1_1SequestInfile.html#a01fdb0b9b4b17a7a7827786d20ff7fe5">SequestInfile</a>
</li>
<li>protein_name_length_
: <a class="el" href="classOpenMS_1_1InspectOutfile.html#af766478d455cf1362247ea55af3865ea">InspectOutfile</a>
</li>
<li>protein_open_
: <a class="el" href="classOpenMS_1_1XTandemXMLFile.html#aa6f12f1725ce722e29025c3e20ead82e">XTandemXMLFile</a>
</li>
<li>protein_quantification_unit
: <a class="el" href="structOpenMS_1_1MzTabUnitIdMetaData.html#adf8d454dbdddd56844d568e7043358da">MzTabUnitIdMetaData</a>
</li>
<li>protein_ref
: <a class="el" href="structOpenSwath_1_1LightPeptide.html#a85ef381b973761bfb8afbe31ba8c010f">LightPeptide</a>
</li>
<li>protein_reference_map_
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#a9d74d4a5d7c9a776c5afbb9628fbc3d5">TargetedExperiment</a>
</li>
<li>protein_reference_map_dirty_
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#acd439a955b648ba43bdc8c5daf5bce99">TargetedExperiment</a>
</li>
<li>protein_refs
: <a class="el" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#a740a58e746765ad598b60eeab9124b8b">Peptide</a>
</li>
<li>protein_score_type_
: <a class="el" href="classOpenMS_1_1ProteinIdentification.html#a940dace1dddca4443da1921a15603575">ProteinIdentification</a>
</li>
<li>protein_significance_threshold_
: <a class="el" href="classOpenMS_1_1ProteinIdentification.html#a47f7aa8465f37243ff2b9cca5b8cd0b4">ProteinIdentification</a>
</li>
<li>protein_type
: <a class="el" href="structOpenMS_1_1ProteinResolver_1_1ProteinEntry.html#a7a065236fab8d0b6cdccb72a5c860944">ProteinResolver::ProteinEntry</a>
</li>
<li>ProteinData()
: <a class="el" href="structOpenMS_1_1PeptideAndProteinQuant_1_1ProteinData.html#ad588e320449512f6befbb9ac4241af56">PeptideAndProteinQuant::ProteinData</a>
</li>
<li>ProteinGroup()
: <a class="el" href="structOpenMS_1_1ProteinIdentification_1_1ProteinGroup.html#a2c5a181931200b0f5060c712f2e0568f">ProteinIdentification::ProteinGroup</a>
, <a class="el" href="classOpenMS_1_1ProtXMLFile.html#a20ef46eaefa1ce57be34122dbb77c21e">ProtXMLFile</a>
</li>
<li>ProteinHit()
: <a class="el" href="classOpenMS_1_1ProteinHit.html#a578bb94f6d9aa70fb537734ca4b47496">ProteinHit</a>
</li>
<li>proteinhit_accession_
: <a class="el" href="classOpenMS_1_1ProteinHitVisualizer.html#af8535a18820d894041773d9365fc612c">ProteinHitVisualizer</a>
</li>
<li>proteinhit_rank_
: <a class="el" href="classOpenMS_1_1ProteinHitVisualizer.html#a184c7c413417af1ecf8d4a18ab920e75">ProteinHitVisualizer</a>
</li>
<li>proteinhit_score_
: <a class="el" href="classOpenMS_1_1ProteinHitVisualizer.html#a665b42905def2c6f9322d1eff2afb786">ProteinHitVisualizer</a>
</li>
<li>proteinhit_sequence_
: <a class="el" href="classOpenMS_1_1ProteinHitVisualizer.html#aa92f3bd854dff7880688d4858320a2ed">ProteinHitVisualizer</a>
</li>
<li>ProteinHitVisualizer()
: <a class="el" href="classOpenMS_1_1ProteinHitVisualizer.html#ab4fb9749229f8a21826c43426eb7037a">ProteinHitVisualizer</a>
</li>
<li>proteinid_to_accession_
: <a class="el" href="classOpenMS_1_1ConsensusXMLFile.html#ad23fa42c762a035786d56a07e2f1ea16">ConsensusXMLFile</a>
, <a class="el" href="classOpenMS_1_1IdXMLFile.html#a1766ff845b55c2773883c4cbd9a0045c">IdXMLFile</a>
, <a class="el" href="classOpenMS_1_1FeatureXMLFile.html#ad23fa42c762a035786d56a07e2f1ea16">FeatureXMLFile</a>
</li>
<li>ProteinIdentification()
: <a class="el" href="classOpenMS_1_1ProteinIdentification.html#a55950a0a644349138b409ad87528d016">ProteinIdentification</a>
</li>
<li>ProteinIdentificationVisualizer
: <a class="el" href="classOpenMS_1_1MetaDataBrowser.html#ac23b1224204cd4efc238f4d95ac9a4e3">MetaDataBrowser</a>
, <a class="el" href="classOpenMS_1_1ProteinIdentificationVisualizer.html#aacf508cbef2f23e714bbeebf35ca7405">ProteinIdentificationVisualizer</a>
</li>
<li>ProteinInference()
: <a class="el" href="classOpenMS_1_1ProteinInference.html#a560381aa77e7bd3e336c11d731f1eee3">ProteinInference</a>
</li>
<li>ProteinName
: <a class="el" href="structOpenMS_1_1TransitionTSVReader_1_1TSVTransition.html#a35b2474e410b11e873139958aa953672">TransitionTSVReader::TSVTransition</a>
</li>
<li>ProteinQuant
: <a class="el" href="classOpenMS_1_1PeptideAndProteinQuant.html#a38f6c1fb46b4457f1fcde70b207f0cea">PeptideAndProteinQuant</a>
</li>
<li>ProteinReferenceMapType
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#a0400a7eb8a8d5641172d4f09caa8a18c">TargetedExperiment</a>
</li>
<li>ProteinRefMap_
: <a class="el" href="classOpenMS_1_1MRMFeatureFinderScoring.html#abfbb890cd21227a2434d240018c1e7a8">MRMFeatureFinderScoring</a>
</li>
<li>ProteinResolver()
: <a class="el" href="classOpenMS_1_1ProteinResolver.html#aad8a670f6f54f779d04a1f3aadf38d88">ProteinResolver</a>
</li>
<li>proteins
: <a class="el" href="structOpenSwath_1_1TargetedExperiment.html#a4859a22cc0ef3a90d082ea9518b6ff68">TargetedExperiment</a>
, <a class="el" href="structOpenMS_1_1ProteinResolver_1_1ISDGroup.html#ab882919cab417d1efe5ab6fd9074b692">ProteinResolver::ISDGroup</a>
, <a class="el" href="structOpenSwath_1_1LightTargetedExperiment.html#a2168136a86922d9cdbb4fb0da143520e">LightTargetedExperiment</a>
, <a class="el" href="structOpenMS_1_1ProteinResolver_1_1MSDGroup.html#ab882919cab417d1efe5ab6fd9074b692">ProteinResolver::MSDGroup</a>
, <a class="el" href="structOpenMS_1_1ProteinResolver_1_1PeptideEntry.html#ab882919cab417d1efe5ab6fd9074b692">ProteinResolver::PeptideEntry</a>
</li>
<li>proteins_
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#ab2d08be0f1ac103d135c8031c340a946">TargetedExperiment</a>
, <a class="el" href="classOpenMS_1_1PepXMLFile.html#aaecddb731d6a7b2f86d458429a6a8529">PepXMLFile</a>
</li>
<li>ProteinType
: <a class="el" href="classOpenMS_1_1DIAScoring.html#a1e9fb94f05f21667db64366fe31b4357">DIAScoring</a>
, <a class="el" href="classOpenMS_1_1MRMFeatureFinderScoring.html#a1e9fb94f05f21667db64366fe31b4357">MRMFeatureFinderScoring</a>
, <a class="el" href="classOpenSwath_1_1MRMScoring.html#a1e9fb94f05f21667db64366fe31b4357">MRMScoring</a>
</li>
<li>ProteinVectorType
: <a class="el" href="classOpenMS_1_1TransitionTSVReader.html#abb7606c8e2c53bab61362619f44b3c11">TransitionTSVReader</a>
, <a class="el" href="classOpenMS_1_1MRMDecoy.html#abb7606c8e2c53bab61362619f44b3c11">MRMDecoy</a>
</li>
<li>ProtonDistributionModel()
: <a class="el" href="classOpenMS_1_1ProtonDistributionModel.html#ac604e4908188b66571c88ff8c56c9fe0">ProtonDistributionModel</a>
</li>
<li>PROTXML
: <a class="el" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a81071dd63505b98ae0a0ebe8c67a8543">FileTypes</a>
</li>
<li>ProtXMLFile()
: <a class="el" href="classOpenMS_1_1ProtXMLFile.html#a263edf6082dcdb1b9f967a96aec08ca4">ProtXMLFile</a>
</li>
<li>pscf_
: <a class="el" href="classOpenMS_1_1PILISCrossValidation.html#acb219042efcec72accd98aa1834b4411">PILISCrossValidation</a>
</li>
<li>PSD
: <a class="el" href="classOpenMS_1_1Precursor.html#ade504dd839d796a10e9fc4d840952dc1a7d2afca1f43e915528abd513b30b7a55">Precursor</a>
</li>
<li>pseudo_counts_
: <a class="el" href="classOpenMS_1_1HiddenMarkovModel.html#a65610d019ea6929ae1ccb1e08e21a15f">HiddenMarkovModel</a>
</li>
<li>pseudoreversePeptide()
: <a class="el" href="classOpenMS_1_1MRMDecoy.html#a70c03bd3940e60e283e74897c82af22d">MRMDecoy</a>
</li>
<li>psi_
: <a class="el" href="classOpenMS_1_1IsotopeWaveletTransform.html#a9857b8679db519b2cc7672e4a719ee5f">IsotopeWaveletTransform< PeakType ></a>
</li>
<li>psi_mod_accession_
: <a class="el" href="classOpenMS_1_1ResidueModification.html#a62d70d39b701f1645bcd21e782a20e33">ResidueModification</a>
</li>
<li>PSLPFormulation()
: <a class="el" href="classOpenMS_1_1PSLPFormulation.html#a5978209f8f414bcd126c98e0a3ec0732">PSLPFormulation</a>
</li>
<li>PSProteinInference()
: <a class="el" href="classOpenMS_1_1PSProteinInference.html#aafeee9366a8363b68890704ab91faacf">PSProteinInference</a>
</li>
<li>PSQ
: <a class="el" href="structOpenMS_1_1FileTypes.html#a1d1cfd8ffb84e947f82999c682b666a7a487f7b120d7ed4b4ff59fedf8e25b140">FileTypes</a>
</li>
<li>pt_prot_map_
: <a class="el" href="classOpenMS_1_1PrecursorIonSelectionPreprocessing.html#a2639dc6ff4b2e1b2c4c5760cde71db3c">PrecursorIonSelectionPreprocessing</a>
</li>
<li>ptm_file_
: <a class="el" href="classOpenMS_1_1PepNovoInfile.html#a4dbfe56272a3df11439d7e3dc804b75c">PepNovoInfile</a>
</li>
<li>ptm_informations_
: <a class="el" href="classOpenMS_1_1Internal_1_1PTMXMLHandler.html#affd1b8e4c2486c7bce6fdcbd3193fa4b">PTMXMLHandler</a>
</li>
<li>PTMname_residues_mass_type_
: <a class="el" href="classOpenMS_1_1InspectInfile.html#acef62b3efa1ca9e46c0869ffab3120dd">InspectInfile</a>
, <a class="el" href="classOpenMS_1_1SequestInfile.html#ac919b7736871856656aba57c85cd0a6a">SequestInfile</a>
</li>
<li>PTMXMLFile()
: <a class="el" href="classOpenMS_1_1PTMXMLFile.html#a95238e6bac560629891b6efb6b29c774">PTMXMLFile</a>
</li>
<li>PTMXMLHandler()
: <a class="el" href="classOpenMS_1_1Internal_1_1PTMXMLHandler.html#a58df2eae11d769acdfd05cb2078fce78">PTMXMLHandler</a>
</li>
<li>ptr_
: <a class="el" href="classOpenMS_1_1BaseVisualizer.html#aa8cb9aa6813b67496a0fbc25b5815f44">BaseVisualizer< ObjectType ></a>
</li>
<li>Publication
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#a967776ccb7c71e2110e81a1c50ee8ebd">TargetedExperiment</a>
</li>
<li>publication
: <a class="el" href="structOpenMS_1_1MzTabUnitIdMetaData.html#a78263d44a52d9fce48938b11394782a6">MzTabUnitIdMetaData</a>
</li>
<li>Publication()
: <a class="el" href="structOpenMS_1_1TargetedExperimentHelper_1_1Publication.html#a98332941d8b2d7e3a5febea17ab7dd5a">Publication</a>
</li>
<li>publications_
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#abb5b9e36128aa8a944c25385400d8878">TargetedExperiment</a>
</li>
<li>PULSECOUNTING
: <a class="el" href="classOpenMS_1_1IonDetector.html#ab0301b5c82d74538dfffc98406254e11a1b9d0cc39dc3d1de4db442674ca8761b">IonDetector</a>
</li>
<li>push2Box_()
: <a class="el" href="classOpenMS_1_1IsotopeWaveletTransform.html#abe3442014d1b490291efebca5d69bf6d">IsotopeWaveletTransform< PeakType ></a>
</li>
<li>push2TmpBox_()
: <a class="el" href="classOpenMS_1_1IsotopeWaveletTransform.html#a6780beba67ab81def140c83860050719">IsotopeWaveletTransform< PeakType ></a>
</li>
<li>push_back()
: <a class="el" href="classOpenMS_1_1ims_1_1IMSAlphabet.html#a43e8877209698ebc3b7f21b1a4e997af">IMSAlphabet</a>
, <a class="el" href="classOpenMS_1_1ConstRefVector.html#ae54b27c747a4baedccaabf99467c13c1">ConstRefVector< ContainerT ></a>
, <a class="el" href="classOpenMS_1_1SparseVector.html#a544b12f046b4789acfe3fd6019d004ad">SparseVector< Value ></a>
</li>
<li>PValue_()
: <a class="el" href="classOpenMS_1_1LabeledPairFinder.html#ade8828f67847b595dae9c4e53067460f">LabeledPairFinder</a>
</li>
<li>pw_filtering_
: <a class="el" href="classOpenMS_1_1ElutionPeakDetection.html#a5429f1926bdbaeabe2d8d1e563a7122e">ElutionPeakDetection</a>
</li>
<li>PYMS
: <a class="el" href="classOpenMS_1_1IonSource.html#aa1f350d16338b42e2384db2e5aa4a3f4aae20fd962cf613d3911e5f7da51de1df">IonSource</a>
</li>
</ul>
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<HR style="height:1px; border:none; border-top:1px solid #c0c0c0;">
<TABLE width="100%" border="0">
<TR>
<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:20:59 using doxygen 1.8.5</font></TD>
</TR>
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