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|
<HTML>
<HEAD>
<TITLE>Class Members - Functions</TITLE>
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<A href="annotated.html">Annotated Classes</A> ·
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<h3><a class="anchor" id="index_a"></a>- a -</h3><ul>
<li>AAIndex()
: <a class="el" href="classOpenMS_1_1AAIndex.html#ab4812f4a3a40ad323db68b25b5b1ddcd">AAIndex</a>
</li>
<li>AASequence()
: <a class="el" href="classOpenMS_1_1AASequence.html#addfd0e7570d9812de0333d90591b9967">AASequence</a>
</li>
<li>AASequenceIdentity()
: <a class="el" href="classOpenMS_1_1MRMDecoy.html#a3e49895127ad86bc7be44dd58189cada">MRMDecoy</a>
</li>
<li>abort_()
: <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a5eeb26578a9f2313c4fff108fb2d9d7b">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a>
</li>
<li>abortPipeline()
: <a class="el" href="classOpenMS_1_1TOPPASBase.html#ae6d95c909402024df0f7a78d69a7c424">TOPPASBase</a>
, <a class="el" href="classOpenMS_1_1TOPPASScene.html#ae6d95c909402024df0f7a78d69a7c424">TOPPASScene</a>
</li>
<li>abortTOPPTool()
: <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a8c5abe9a7d1bbb57d8b7a6bd70b175d7">TOPPViewBase</a>
</li>
<li>aboutToBeDestroyed()
: <a class="el" href="classOpenMS_1_1SpectrumWidget.html#ade35877ecc18e393ae2ec1332e36e84f">SpectrumWidget</a>
, <a class="el" href="classOpenMS_1_1TOPPASWidget.html#a551953b76b76e3b12e7f65515b2bff69">TOPPASWidget</a>
</li>
<li>aboutToCloseId()
: <a class="el" href="classOpenMS_1_1EnhancedTabBar.html#ad4196c5b4eaa7e6ee70e211d4c31ce1b">EnhancedTabBar</a>
, <a class="el" href="classOpenMS_1_1TOPPASTabBar.html#ad4196c5b4eaa7e6ee70e211d4c31ce1b">TOPPASTabBar</a>
</li>
<li>absolutePath()
: <a class="el" href="classOpenMS_1_1File.html#a61899cbc4ac6a887a6e61e14e5e45685">File</a>
</li>
<li>AccurateMassSearchEngine()
: <a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#a2827ea0b8c802e5334b5fe7d25524d5b">AccurateMassSearchEngine</a>
</li>
<li>AccurateMassSearchResult()
: <a class="el" href="classOpenMS_1_1AccurateMassSearchResult.html#a4ea3e16c5488f402fbb98c06b800990f">AccurateMassSearchResult</a>
</li>
<li>acidic()
: <a class="el" href="classOpenMS_1_1AAIndex.html#a9dfe721ea8c23f1ab211ac5d802615aa">AAIndex</a>
</li>
<li>Acquisition()
: <a class="el" href="classOpenMS_1_1Acquisition.html#a0057d19707aa1807e34396536beedeab">Acquisition</a>
</li>
<li>AcquisitionInfo()
: <a class="el" href="classOpenMS_1_1AcquisitionInfo.html#a48f5b5b428d09ca5e82469fd7a03e1c1">AcquisitionInfo</a>
</li>
<li>AcquisitionInfoVisualizer()
: <a class="el" href="classOpenMS_1_1AcquisitionInfoVisualizer.html#a3bcea51e681d6220439d747bf51fcb0d">AcquisitionInfoVisualizer</a>
</li>
<li>AcquisitionVisualizer()
: <a class="el" href="classOpenMS_1_1AcquisitionVisualizer.html#ac24b2ba8bd1ab40ad145ba5efb002397">AcquisitionVisualizer</a>
</li>
<li>AcqusHandler()
: <a class="el" href="classOpenMS_1_1Internal_1_1AcqusHandler.html#a14f34f4dc486b65f294cc6f909496179">AcqusHandler</a>
</li>
<li>actionModeChange()
: <a class="el" href="classOpenMS_1_1Spectrum3DOpenGLCanvas.html#a50f15e863de74778ad95e0a9ef500a24">Spectrum3DOpenGLCanvas</a>
, <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#a50f15e863de74778ad95e0a9ef500a24">SpectrumCanvas</a>
</li>
<li>activate1DSpectrum()
: <a class="el" href="classOpenMS_1_1TOPPViewBehaviorInterface.html#a45c6956a747532e2ce992e6fcabfae6e">TOPPViewBehaviorInterface</a>
, <a class="el" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a550461e8df23adc47814657d14fa7e4c">TOPPViewIdentificationViewBehavior</a>
, <a class="el" href="classOpenMS_1_1TOPPViewSpectraViewBehavior.html#a550461e8df23adc47814657d14fa7e4c">TOPPViewSpectraViewBehavior</a>
, <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a73c060470c58fceb0d4cca274832d153">TOPPViewBase</a>
</li>
<li>activateAsPrecursorPeak()
: <a class="el" href="classOpenMS_1_1MSPeak.html#a98ddf1a8450f074b2f413aa6c494ebd0">MSPeak</a>
</li>
<li>activateBehavior()
: <a class="el" href="classOpenMS_1_1TOPPViewBehaviorInterface.html#ab67dd8f6035206616d85476a595bd880">TOPPViewBehaviorInterface</a>
, <a class="el" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a8d1a9183b4f49dfa1afa2879836a40d3">TOPPViewIdentificationViewBehavior</a>
, <a class="el" href="classOpenMS_1_1TOPPViewSpectraViewBehavior.html#a8d1a9183b4f49dfa1afa2879836a40d3">TOPPViewSpectraViewBehavior</a>
</li>
<li>activateLayer()
: <a class="el" href="classOpenMS_1_1Spectrum1DCanvas.html#a6b84f609b0376f7f10554000daffa056">Spectrum1DCanvas</a>
, <a class="el" href="classOpenMS_1_1Spectrum2DCanvas.html#a6b84f609b0376f7f10554000daffa056">Spectrum2DCanvas</a>
, <a class="el" href="classOpenMS_1_1Spectrum3DCanvas.html#a6b84f609b0376f7f10554000daffa056">Spectrum3DCanvas</a>
, <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#a419822ac2d533f6370f7ed2081214b09">SpectrumCanvas</a>
</li>
<li>activatePrecalculationMode()
: <a class="el" href="classOpenMS_1_1MultiGradient.html#a0f0164392fc140b4e1c72a70647ec611">MultiGradient</a>
</li>
<li>activateSpectrum()
: <a class="el" href="classOpenMS_1_1Spectrum1DCanvas.html#a69f84ce63d554c23a60e26a924c9513e">Spectrum1DCanvas</a>
</li>
<li>activeLayerIndex()
: <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#a62669b2b00f9f944d63734579c2aab10">SpectrumCanvas</a>
</li>
<li>activeWindow_()
: <a class="el" href="classOpenMS_1_1TOPPASBase.html#afd455e46d2145ebb46704df56311c330">TOPPASBase</a>
</li>
<li>add()
: <a class="el" href="classOpenMS_1_1BigString.html#a0018fbf09ab94596b2a0dac01709102f">BigString</a>
, <a class="el" href="classOpenMS_1_1Compomer.html#a39c17834a52d3f9f97bd2b41694afab0">Compomer</a>
, <a class="el" href="classOpenMS_1_1QTCluster.html#ad286f86f1cc646b4f54506c679378b54">QTCluster</a>
, <a class="el" href="classOpenMS_1_1DataFilters.html#a3c2decb5a7ca207dbf983c302a65471e">DataFilters</a>
, <a class="el" href="classOpenMS_1_1Math_1_1AveragePosition.html#aab83fef12a65ca4880219fc70de3aab5">AveragePosition< D ></a>
, <a class="el" href="classOpenMS_1_1MetaDataBrowser.html#aa3133215d8200425970b384a4a0f53d3">MetaDataBrowser</a>
, <a class="el" href="classOpenMS_1_1TOPPASResources.html#a83981a0888052447fb0fe6cbbd40fd7e">TOPPASResources</a>
</li>
<li>add1DSignal_()
: <a class="el" href="classOpenMS_1_1RawMSSignalSimulation.html#a6c9a6c5489b1e8d745d0ea9ac439161e">RawMSSignalSimulation</a>
</li>
<li>add2Buttons_()
: <a class="el" href="classOpenMS_1_1BaseVisualizerGUI.html#af48671564921b46379ea517739d390db">BaseVisualizerGUI</a>
</li>
<li>add2DSignal_()
: <a class="el" href="classOpenMS_1_1RawMSSignalSimulation.html#a211e45de4d29779d4e6ba3da564bec39">RawMSSignalSimulation</a>
</li>
<li>add_()
: <a class="el" href="classOpenMS_1_1MetaInfoVisualizer.html#aaa297c2cb3c26e8e8a37a3f06f487917">MetaInfoVisualizer</a>
</li>
<li>add_alignment_error()
: <a class="el" href="classOpenMS_1_1LCMS.html#a7185157195b5d65d84fcebe23ca38f82">LCMS</a>
</li>
<li>add_feature()
: <a class="el" href="classOpenMS_1_1LCMS.html#ad54ee79a5a849bfe2b24d22fafdfa139">LCMS</a>
</li>
<li>add_LC_elution_peak()
: <a class="el" href="classOpenMS_1_1LCMSCData.html#aea8cfd0a7f57fc6ea53f2ccaafd12847">LCMSCData</a>
</li>
<li>add_matched_feature()
: <a class="el" href="classOpenMS_1_1SHFeature.html#acbd63f22e082a8effd3b12e1bdad9303">SHFeature</a>
</li>
<li>add_modification()
: <a class="el" href="classOpenMS_1_1MS2Info.html#a0cf32cecd3469b66b92cb42b80173f26">MS2Info</a>
</li>
<li>add_modification_()
: <a class="el" href="classOpenMS_1_1TransitionTSVReader.html#ac2986b272b16fac328a333b39f80231c">TransitionTSVReader</a>
</li>
<li>add_MS2_info()
: <a class="el" href="classOpenMS_1_1SHFeature.html#a0dd0293abfa15d42c75886f7117521ba">SHFeature</a>
</li>
<li>add_raw_peak_to_LC_MS_run()
: <a class="el" href="classOpenMS_1_1FTPeakDetectController.html#a4dd12bf5c82e3a8444811458a6cd6410">FTPeakDetectController</a>
</li>
<li>add_raw_spec_name()
: <a class="el" href="classOpenMS_1_1LCMS.html#a6ac2db2287b5133555895597d19408a6">LCMS</a>
</li>
<li>add_raw_spec_name_map()
: <a class="el" href="classOpenMS_1_1LCMS.html#af262b2edcfb4150cc0e6a8c164950854">LCMS</a>
</li>
<li>add_scan_raw_data()
: <a class="el" href="classOpenMS_1_1ProcessData.html#ae646c09d0fbbebe79244f74b4541074d">ProcessData</a>
</li>
<li>addAbundantImmoniumIons()
: <a class="el" href="classOpenMS_1_1TheoreticalSpectrumGenerator.html#a7ef871b1fbe9f6cc20d547aee63d0873">TheoreticalSpectrumGenerator</a>
</li>
<li>addBaseLine_()
: <a class="el" href="classOpenMS_1_1RawMSSignalSimulation.html#ac264d116286d6f4264b024ec0941cf7f">RawMSSignalSimulation</a>
</li>
<li>addBooleanComboBox_()
: <a class="el" href="classOpenMS_1_1BaseVisualizerGUI.html#ae9b734259b9048dfeacbd9aa8a797c94">BaseVisualizerGUI</a>
</li>
<li>addButton_()
: <a class="el" href="classOpenMS_1_1BaseVisualizerGUI.html#a8d50322cb71852778c1587357789f28d">BaseVisualizerGUI</a>
</li>
<li>addChromatogram()
: <a class="el" href="classOpenMS_1_1MRMTransitionGroup.html#a6b636a97f3625bc651977bcec2a98919">MRMTransitionGroup< SpectrumType, TransitionType ></a>
, <a class="el" href="classOpenMS_1_1MSExperiment.html#a37eb544fb451472f4679589fee735df4">MSExperiment< PeakT, ChromatogramPeakT ></a>
</li>
<li>addColumn()
: <a class="el" href="classOpenMS_1_1LPWrapper.html#a04a9300b8b9ea4bcabd7f968f0cc16c9">LPWrapper</a>
</li>
<li>addComboBox_()
: <a class="el" href="classOpenMS_1_1BaseVisualizerGUI.html#a097741721d4301a8b8b546e20e749411">BaseVisualizerGUI</a>
</li>
<li>addCompound()
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#aaaef1de4f65364463ffe55b9a9963f68">TargetedExperiment</a>
</li>
<li>addConfiguration()
: <a class="el" href="classOpenMS_1_1IncludeExcludeTarget.html#a23d123c6c4a5408d11a657ba642a3a7d">IncludeExcludeTarget</a>
, <a class="el" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#a8917b2af9acc35d3776531949dcafd37">TraMLProduct</a>
</li>
<li>addConsensusMap()
: <a class="el" href="classOpenMS_1_1MSQuantifications.html#ac9541c6fed8bf1fb085889bd5533ab84">MSQuantifications</a>
</li>
<li>addContact()
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#af99c90b032d9d618eab2c46aa54072ec">TargetedExperiment</a>
</li>
<li>addConvexHull()
: <a class="el" href="classOpenMS_1_1FeaFiModule.html#ac641d17ba54cde66c331d17bdee355e8">FeaFiModule< PeakType, FeatureType ></a>
</li>
<li>addCV()
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#a79eac977e7e584579cd3a4d69252cb43">TargetedExperiment</a>
</li>
<li>addCVReference()
: <a class="el" href="classOpenMS_1_1CVMappings.html#ac3885bb66b5b7a970d8acbfee29f4a05">CVMappings</a>
</li>
<li>addCVTerm()
: <a class="el" href="classOpenMS_1_1CVMappingRule.html#a8ceef9133a5978af51cecbabcd3b5f12">CVMappingRule</a>
, <a class="el" href="classOpenMS_1_1CVTermList.html#a90879baad2c11f3b77d87bbf255f31c8">CVTermList</a>
</li>
<li>addData()
: <a class="el" href="classOpenMS_1_1TOPPViewBase.html#afe89e2ae7174e81f9dea2bbc9a94c43d">TOPPViewBase</a>
</li>
<li>addDataDB()
: <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a0b768098d8235f4904a38ec53ef7d984">TOPPViewBase</a>
</li>
<li>addDataFile()
: <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a1c92b33d10330879ab9d4bc2bb888d07">TOPPViewBase</a>
</li>
<li>addDataProcessing_()
: <a class="el" href="classOpenMS_1_1TOPPBase.html#a1254afd939487eab144c794a247fca86">TOPPBase</a>
, <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#aaac8f1a76ed8daa37ed605f1dd60d22a">SpectrumCanvas</a>
</li>
<li>addDetectorNoise_()
: <a class="el" href="classOpenMS_1_1RawMSSignalSimulation.html#a860237be42592676bb9a7f9da6e50fd5">RawMSSignalSimulation</a>
</li>
<li>addDoubleLineEdit_()
: <a class="el" href="classOpenMS_1_1BaseVisualizerGUI.html#abe2724437745df33ab58a365c6cc7693">BaseVisualizerGUI</a>
</li>
<li>addEdge()
: <a class="el" href="classOpenMS_1_1TOPPASScene.html#aafc30e11c67f9b893bdf5b0fbdc088f0">TOPPASScene</a>
</li>
<li>addEluent()
: <a class="el" href="classOpenMS_1_1Gradient.html#af960b17f6274c240802b2b2ee1fe2d93">Gradient</a>
</li>
<li>addEluent_()
: <a class="el" href="classOpenMS_1_1GradientVisualizer.html#ac840aab74282d770843a33c4cbbbabc2">GradientVisualizer</a>
</li>
<li>addEmptyLine_()
: <a class="el" href="classOpenMS_1_1TOPPBase.html#a16d8261b0f0279c408f75e7470d47cb9">TOPPBase</a>
</li>
<li>addEnzymeInfo()
: <a class="el" href="classOpenMS_1_1SequestInfile.html#a26f2d00ec15065d136124df4b1c8b6f2">SequestInfile</a>
</li>
<li>addExcludeTarget()
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#aa60eb5de70aefb172abd7d40281d770b">TargetedExperiment</a>
</li>
<li>addExternalType()
: <a class="el" href="structOpenMS_1_1Internal_1_1ToolDescription.html#acc171675488671f3a0610ace36ec1d87">ToolDescription</a>
</li>
<li>addFakeMSMSToFeature()
: <a class="el" href="classOpenMS_1_1FTPeakDetectController.html#a2de0397680a582ca964c0ffab9ef8af6">FTPeakDetectController</a>
</li>
<li>addFeature()
: <a class="el" href="classOpenMS_1_1MRMFeature.html#afb0c149f5f33fa1a4284169a6164efa9">MRMFeature</a>
, <a class="el" href="classOpenMS_1_1MRMTransitionGroup.html#ad54c2606255628d4fe2af3793b1b3da4">MRMTransitionGroup< SpectrumType, TransitionType ></a>
</li>
<li>addFile()
: <a class="el" href="classOpenMS_1_1FileWatcher.html#ad2ea80368c90fd817557e390ca51b763">FileWatcher</a>
</li>
<li>addFilter()
: <a class="el" href="classOpenMS_1_1SILACFiltering.html#a0a5684531570b4b875da9016c2d9a5bc">SILACFiltering</a>
</li>
<li>addHit()
: <a class="el" href="classOpenMS_1_1SpectrumIdentification.html#ab4157a78217d2fe89fac09cba2da3c84">SpectrumIdentification</a>
, <a class="el" href="structseqan_1_1FoundProteinFunctor.html#a0a70dceb8e235a6736090989e40c5df9">FoundProteinFunctor</a>
</li>
<li>addHoveringEdge()
: <a class="el" href="classOpenMS_1_1TOPPASScene.html#aae0e97bbef060e784e889f5af74860ed">TOPPASScene</a>
</li>
<li>addIncludeTarget()
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#ac84a0f845b7c468071391c3ab3db8559">TargetedExperiment</a>
</li>
<li>addInEdge()
: <a class="el" href="classOpenMS_1_1TOPPASVertex.html#a41b2212ef985670b1cf803b749c5d1be">TOPPASVertex</a>
</li>
<li>addInstrument()
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#a3c3a76a890bf2f5e7777c5aa0b04e8dc">TargetedExperiment</a>
</li>
<li>addIntensity()
: <a class="el" href="classOpenMS_1_1BackgroundIntensityBin.html#ad8cbdd7ceec17b7da82aae92c5696c78">BackgroundIntensityBin</a>
</li>
<li>addIntermediateProduct()
: <a class="el" href="classOpenMS_1_1ReactionMonitoringTransition.html#a4fb35a74a5dc77d6aee5438c682b230f">ReactionMonitoringTransition</a>
</li>
<li>addInterpretation()
: <a class="el" href="classOpenMS_1_1IncludeExcludeTarget.html#acc5805c7fd6827bd6a645d83bcb94279">IncludeExcludeTarget</a>
, <a class="el" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#abc303192a66dafadb680dd673921b59c">TraMLProduct</a>
</li>
<li>addIntLineEdit_()
: <a class="el" href="classOpenMS_1_1BaseVisualizerGUI.html#a50d3f68dd7461ac538ec562b930489bf">BaseVisualizerGUI</a>
</li>
<li>addIsotopeTrace()
: <a class="el" href="classOpenMS_1_1ConsensusIsotopePattern.html#aaa79c75aff7c7f630197379441936002">ConsensusIsotopePattern</a>
</li>
<li>addLabel_()
: <a class="el" href="classOpenMS_1_1BaseVisualizerGUI.html#a142088822622f13706de6b93cba68abd">BaseVisualizerGUI</a>
</li>
<li>addLabelAnnotation_()
: <a class="el" href="classOpenMS_1_1Spectrum1DCanvas.html#ae689407f53df5e427ce0c070817a518f">Spectrum1DCanvas</a>
</li>
<li>addLabelToProteinHits_()
: <a class="el" href="classOpenMS_1_1ICPLLabeler.html#a8ec6060c5c64b6458cf2ba40babb7abe">ICPLLabeler</a>
</li>
<li>addLayer()
: <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#a460614110c476c0a8cefdff342b80ae0">SpectrumCanvas</a>
</li>
<li>addLCelutionProfile()
: <a class="el" href="classOpenMS_1_1FTPeakDetectController.html#a54f13dcb383f1072bbb6859a1d0fdc35">FTPeakDetectController</a>
</li>
<li>addLineEdit_()
: <a class="el" href="classOpenMS_1_1BaseVisualizerGUI.html#ada249359afbb9c51617fe70fca8d64cc">BaseVisualizerGUI</a>
</li>
<li>addLineEditButton_()
: <a class="el" href="classOpenMS_1_1BaseVisualizerGUI.html#ad6d8b5f4f1124a4eb19974367cdeeca3">BaseVisualizerGUI</a>
</li>
<li>addListView_()
: <a class="el" href="classOpenMS_1_1BaseVisualizerGUI.html#a29975d3b3d23dc176f2cafab43da281d">BaseVisualizerGUI</a>
</li>
<li>addLossFormula()
: <a class="el" href="classOpenMS_1_1Residue.html#adba642adc13c85d6fde69d3b380f16e8">Residue</a>
</li>
<li>addLossName()
: <a class="el" href="classOpenMS_1_1Residue.html#a0df4a3428d609c941a78bf8895b4ea3d">Residue</a>
</li>
<li>addMappingRule()
: <a class="el" href="classOpenMS_1_1CVMappings.html#a1ee9697a1b1cc15f7de5d9c07dbd9399">CVMappings</a>
</li>
<li>addMassTrace()
: <a class="el" href="classOpenMS_1_1FeatureHypothesis.html#ae82a06ece94d2dac5f9d74d8e985a570">FeatureHypothesis</a>
</li>
<li>addMaxInclusionListSizeConstraints_()
: <a class="el" href="classOpenMS_1_1PSLPFormulation.html#acb8e7e2fdca6e28e41ccf00804745831">PSLPFormulation</a>
</li>
<li>addModification()
: <a class="el" href="classOpenMS_1_1ModificationDefinitionsSet.html#aed9453e41d13c97bf24154448ef78af6">ModificationDefinitionsSet</a>
</li>
<li>addModificationToPeptideHit_()
: <a class="el" href="classOpenMS_1_1ICPLLabeler.html#a81fcc68012a08eb22b67d6a592d88960">ICPLLabeler</a>
, <a class="el" href="classOpenMS_1_1ITRAQLabeler.html#a11125ff6e91726c0e92a376b7dd1ee05">ITRAQLabeler</a>
, <a class="el" href="classOpenMS_1_1O18Labeler.html#a81fcc68012a08eb22b67d6a592d88960">O18Labeler</a>
, <a class="el" href="classOpenMS_1_1SILACLabeler.html#a81fcc68012a08eb22b67d6a592d88960">SILACLabeler</a>
</li>
<li>addMS1elutionSignal()
: <a class="el" href="classOpenMS_1_1FeatureLCProfile.html#a9ec70d6c319112c0a168030647516821">FeatureLCProfile</a>
</li>
<li>addMS2ConsensusSpectrum()
: <a class="el" href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html#ab130bb4d52d844b9b442989df7d15bb1">ClusteredMS2ConsensusSpectrum</a>
</li>
<li>addMS2Feature()
: <a class="el" href="classOpenMS_1_1SHFeature.html#ac089e093b761406f5da922d9245a3876">SHFeature</a>
</li>
<li>addMS2FeatureToMS1Feature()
: <a class="el" href="classOpenMS_1_1FTPeakDetectController.html#aa18b8f45eeff8fc2a60b5e9e60c25ec1">FTPeakDetectController</a>
</li>
<li>addMS2Fragment()
: <a class="el" href="classOpenMS_1_1MS2ConsensusSpectrum.html#a4c10d718e0598244dd3403a5691e9d54">MS2ConsensusSpectrum</a>
</li>
<li>addMSLevel()
: <a class="el" href="classOpenMS_1_1PeakFileOptions.html#a74bc0f5f4cc2536c15fe20eceb206773">PeakFileOptions</a>
</li>
<li>addMSPeak()
: <a class="el" href="classOpenMS_1_1BackgroundIntensityBin.html#abe126ccc079c5b48d872636e786c649a">BackgroundIntensityBin</a>
</li>
<li>addNewState()
: <a class="el" href="classOpenMS_1_1HiddenMarkovModel.html#a33b8485e92a7eab1544f9da7fc6ef94f">HiddenMarkovModel</a>
</li>
<li>addNTermLossFormula()
: <a class="el" href="classOpenMS_1_1Residue.html#ad5c0d3ca53e3a4fba5a07158e9b1f7ff">Residue</a>
</li>
<li>addNTermLossName()
: <a class="el" href="classOpenMS_1_1Residue.html#a96eb6ef93f531a07f603b81295dd4ee3">Residue</a>
</li>
<li>addOutEdge()
: <a class="el" href="classOpenMS_1_1TOPPASVertex.html#a088a48297a4c933688d8d9edc367701b">TOPPASVertex</a>
</li>
<li>addOutsideMS1elutionSignal()
: <a class="el" href="classOpenMS_1_1FeatureLCProfile.html#ad446f1ea2a2d7b76b287567fe62b939c">FeatureLCProfile</a>
</li>
<li>addPeak_()
: <a class="el" href="classOpenMS_1_1PeakPickerCWT.html#aed7dd813b766325c5481424e9a901a08">PeakPickerCWT</a>
</li>
<li>addPeakAnnotation()
: <a class="el" href="classOpenMS_1_1Spectrum1DCanvas.html#abf6bbf87cead0d78aa8ab3e730938a27">Spectrum1DCanvas</a>
</li>
<li>addPeakMSScan()
: <a class="el" href="classOpenMS_1_1BackgroundControl.html#af9d8c6add1fb20d82d92a5f178fd7ab9">BackgroundControl</a>
</li>
<li>addPeaks()
: <a class="el" href="classOpenMS_1_1TheoreticalSpectrumGenerator.html#a5955bf657a4eaab0d1ac1319f916cc92">TheoreticalSpectrumGenerator</a>
</li>
<li>addPeaks_()
: <a class="el" href="classOpenMS_1_1PILISModel.html#a16f02882f30b54241554e2a96d01bf0e">PILISModel</a>
</li>
<li>addPeptide()
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#a54e1bfbdfa89b4abc2f22056a9bb13a6">TargetedExperiment</a>
</li>
<li>addPoint()
: <a class="el" href="classOpenMS_1_1ConvexHull2D.html#a2e47ab249f168435217f81800a63ea37">ConvexHull2D</a>
</li>
<li>addPoints()
: <a class="el" href="classOpenMS_1_1ConvexHull2D.html#ad84ba51670fc0bd9b6b2091ba27c3013">ConvexHull2D</a>
</li>
<li>addPrecursorAcquisitionNumberConstraint_()
: <a class="el" href="classOpenMS_1_1PSLPFormulation.html#ae9b0d6ee22f04f0a1ddabd628521bb08">PSLPFormulation</a>
</li>
<li>addPrecursorCVTerm()
: <a class="el" href="classOpenMS_1_1ReactionMonitoringTransition.html#ae7711cb38303fe16f304e1e1b7e1c674">ReactionMonitoringTransition</a>
, <a class="el" href="classOpenMS_1_1IncludeExcludeTarget.html#ae7711cb38303fe16f304e1e1b7e1c674">IncludeExcludeTarget</a>
</li>
<li>addPrecursorLabels1D_()
: <a class="el" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a7fe77b331367b1eb2b04311f25ef48a4">TOPPViewIdentificationViewBehavior</a>
</li>
<li>addPrecursorPeaks()
: <a class="el" href="classOpenMS_1_1TheoreticalSpectrumGenerator.html#aec98384c18792e9312ca12d334eb0eee">TheoreticalSpectrumGenerator</a>
</li>
<li>addPredecessorState()
: <a class="el" href="classOpenMS_1_1HMMState.html#a27417914e9b5763361281dc7c9b421a6">HMMState</a>
</li>
<li>addPredictionTerm()
: <a class="el" href="classOpenMS_1_1ReactionMonitoringTransition.html#add9ca8baaa351c398f4785c76f8433aa">ReactionMonitoringTransition</a>
, <a class="el" href="classOpenMS_1_1IncludeExcludeTarget.html#add9ca8baaa351c398f4785c76f8433aa">IncludeExcludeTarget</a>
</li>
<li>addProductCVTerm()
: <a class="el" href="classOpenMS_1_1ReactionMonitoringTransition.html#a57d5061011b9ef3ceef0d51e8a50f7e5">ReactionMonitoringTransition</a>
, <a class="el" href="classOpenMS_1_1IncludeExcludeTarget.html#a57d5061011b9ef3ceef0d51e8a50f7e5">IncludeExcludeTarget</a>
</li>
<li>addProtein()
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#aaadae361037e8e6b6d1ea797b365eb09">TargetedExperiment</a>
</li>
<li>addProteinAccession()
: <a class="el" href="classOpenMS_1_1PeptideHit.html#a49d90d2fa65c45386e5725386d7741fe">PeptideHit</a>
</li>
<li>addProteinCoverageConstraint_()
: <a class="el" href="classOpenMS_1_1PSLPFormulation.html#a7f90dbe3e72b9b6245c32206d9c2df47">PSLPFormulation</a>
</li>
<li>addProteinGroups_()
: <a class="el" href="classOpenMS_1_1IdXMLFile.html#abc36e46ff85f021a4bd9e23eea7e67fb">IdXMLFile</a>
</li>
<li>addProteinToILP_()
: <a class="el" href="classOpenMS_1_1PSLPFormulation.html#aacbd6aaa0fadc5a38bd714b16a01df01">PSLPFormulation</a>
</li>
<li>addPublication()
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#ae198d891229501c0e879a14dc9af8303">TargetedExperiment</a>
</li>
<li>addRatio()
: <a class="el" href="classOpenMS_1_1ConsensusFeature.html#a398f108aa8429a0bf91188323fdbee75">ConsensusFeature</a>
</li>
<li>addRecentFile_()
: <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a0931a9c806c4666cdec3f3910604ac2d">TOPPViewBase</a>
</li>
<li>addResidue()
: <a class="el" href="classOpenMS_1_1ResidueDB.html#aa19e9c2b843f782bf31a8f9a79bf0976">ResidueDB</a>
</li>
<li>addResidue_()
: <a class="el" href="classOpenMS_1_1ResidueDB.html#a1ab10c752e14e3986eb409975253c8bc">ResidueDB</a>
</li>
<li>addResidueSet()
: <a class="el" href="classOpenMS_1_1Residue.html#ae40a031caf27f6184474a4eb75db428e">Residue</a>
</li>
<li>addRow()
: <a class="el" href="classOpenMS_1_1LPWrapper.html#a74e9674979841fbb871a1aff5d1aaf09">LPWrapper</a>
</li>
<li>addRTBinCapacityConstraint_()
: <a class="el" href="classOpenMS_1_1PSLPFormulation.html#a3c1ef316108b552bb3e1d52eb5cf3be7">PSLPFormulation</a>
</li>
<li>addRunAttachment()
: <a class="el" href="classOpenMS_1_1QcMLFile.html#a3709c4e88dedfa8dc8a04a2da61bec7b">QcMLFile</a>
</li>
<li>addRunQualityParameter()
: <a class="el" href="classOpenMS_1_1QcMLFile.html#ae49f127917512308e362296567718e36">QcMLFile</a>
</li>
<li>addScore()
: <a class="el" href="classOpenMS_1_1MRMFeature.html#a8d4bb3e3b2f22cdaa1855d09f5d98a41">MRMFeature</a>
</li>
<li>addSearchFile()
: <a class="el" href="classOpenMS_1_1IDEvaluationBase.html#aef488ced33b7003c3eed1899b578e884">IDEvaluationBase</a>
</li>
<li>addSeparator_()
: <a class="el" href="classOpenMS_1_1BaseVisualizerGUI.html#a34a96a77e8f550db0f1ad844f0dfc49e">BaseVisualizerGUI</a>
</li>
<li>addSetAttachment()
: <a class="el" href="classOpenMS_1_1QcMLFile.html#af09593bca82308b8c64bd0995833140a">QcMLFile</a>
</li>
<li>addSetQualityParameter()
: <a class="el" href="classOpenMS_1_1QcMLFile.html#a4beb91929a29fcd0650344ad5d13afe0">QcMLFile</a>
</li>
<li>addShotNoise_()
: <a class="el" href="classOpenMS_1_1RawMSSignalSimulation.html#a563cc26d3df581dc1fbf6af58c7f9589">RawMSSignalSimulation</a>
</li>
<li>addSingleChargedIons_()
: <a class="el" href="classOpenMS_1_1CompNovoIonScoringBase.html#a7cd6a61d83eec5a9c1c4603e0e0724b9">CompNovoIonScoringBase</a>
</li>
<li>addSoftware()
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#a7ab18d77d0829f9f0aa6355db5fc7e71">TargetedExperiment</a>
</li>
<li>addSourceFile()
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#a752fd4b3b846a7a768fa6f2d375947c0">TargetedExperiment</a>
</li>
<li>addSpectrum()
: <a class="el" href="classOpenMS_1_1MSExperiment.html#ae9dafbb74a1a4c430ceef03e25ab8e10">MSExperiment< PeakT, ChromatogramPeakT ></a>
</li>
<li>addSpectrumIdentification()
: <a class="el" href="classOpenMS_1_1Identification.html#a066ab9bd34e89cea71b5532c391e5903">Identification</a>
</li>
<li>addStepSizeConstraint_()
: <a class="el" href="classOpenMS_1_1PSLPFormulation.html#ab8929efe83b307a688a4bd616e5b6394">PSLPFormulation</a>
</li>
<li>addSuccessorState()
: <a class="el" href="classOpenMS_1_1HMMState.html#ab156c76c0316ddb3ada407731840d7c0">HMMState</a>
</li>
<li>addSynonym()
: <a class="el" href="classOpenMS_1_1Residue.html#ae00ea2fcf9b6420da3ddb261674167af">Residue</a>
, <a class="el" href="classOpenMS_1_1ResidueModification.html#ae00ea2fcf9b6420da3ddb261674167af">ResidueModification</a>
</li>
<li>addSynonymTransition()
: <a class="el" href="classOpenMS_1_1HiddenMarkovModel.html#acaca1195a5471c2b261571073675fb58">HiddenMarkovModel</a>
</li>
<li>addTab()
: <a class="el" href="classOpenMS_1_1EnhancedTabBar.html#a724e639a4d5c2a3b97b741e371b69e2e">EnhancedTabBar</a>
, <a class="el" href="classOpenMS_1_1TOPPASTabBar.html#a724e639a4d5c2a3b97b741e371b69e2e">TOPPASTabBar</a>
</li>
<li>addTag()
: <a class="el" href="classOpenMS_1_1Param.html#a3e45661b2e4e8074da0bf2e391a93cbb">Param</a>
</li>
<li>addTags()
: <a class="el" href="classOpenMS_1_1Param.html#a5eaacd9125c5a727a03284e050cd8938">Param</a>
</li>
<li>addTargetCVTerm()
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#a9af1c5c0e482acec56e60821effe6149">TargetedExperiment</a>
</li>
<li>addText_()
: <a class="el" href="classOpenMS_1_1TOPPBase.html#a651cd858906ccd50871da7dbba6d4f67">TOPPBase</a>
</li>
<li>addTextEdit_()
: <a class="el" href="classOpenMS_1_1BaseVisualizerGUI.html#a0a7c2050829ff198d50cd15040ddb43c">BaseVisualizerGUI</a>
</li>
<li>addTheoreticalSpectrumLayer_()
: <a class="el" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a217c453a1ab4f11be27685e3d9f38fde">TOPPViewIdentificationViewBehavior</a>
</li>
<li>addTimepoint()
: <a class="el" href="classOpenMS_1_1Gradient.html#a717ede390995dbd5cccbd4d831027319">Gradient</a>
</li>
<li>addTimepoint_()
: <a class="el" href="classOpenMS_1_1GradientVisualizer.html#a70a1f2db6a74d668b085cc148091ad3a">GradientVisualizer</a>
</li>
<li>addToCache_()
: <a class="el" href="classOpenMS_1_1Logger_1_1LogStreamBuf.html#acd79d657304f6e29dd8f7b2cb7386337">LogStreamBuf</a>
</li>
<li>addToGroup()
: <a class="el" href="classOpenMS_1_1FeatureGroupingAlgorithmUnlabeled.html#a3c28d3e7ceae9570991221590e495da6">FeatureGroupingAlgorithmUnlabeled</a>
</li>
<li>addTOPPASFile()
: <a class="el" href="classOpenMS_1_1TOPPASBase.html#a582b9d08f4ab872a48b3c02157b98593">TOPPASBase</a>
</li>
<li>addTransition()
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#aa269d279d1aaa3888e28cf6db84dcd49">TargetedExperiment</a>
, <a class="el" href="classOpenMS_1_1MRMTransitionGroup.html#a57e977750ef7b1d7e8e5f8cce2b91f1e">MRMTransitionGroup< SpectrumType, TransitionType ></a>
</li>
<li>addTreatment()
: <a class="el" href="classOpenMS_1_1Sample.html#aed8975f433261ee670481a594eb2d74c">Sample</a>
</li>
<li>addTreeDistance_()
: <a class="el" href="classOpenMS_1_1HierarchicalClustering.html#a66176a12502c2f6c0ea114a48346d3ba">HierarchicalClustering< PointRef ></a>
</li>
<li>Adduct()
: <a class="el" href="classOpenMS_1_1Adduct.html#ad77004afff560a8f7f500875573a044a">Adduct</a>
</li>
<li>addUpSpectra()
: <a class="el" href="classOpenMS_1_1SpectrumAddition.html#a66af26742cdb048bacaed720d147f7fb">SpectrumAddition</a>
</li>
<li>addUserLabelAnnotation_()
: <a class="el" href="classOpenMS_1_1Spectrum1DCanvas.html#ab294d62a960b3d04760da074c05f1d52">Spectrum1DCanvas</a>
</li>
<li>addUserPeakAnnotation_()
: <a class="el" href="classOpenMS_1_1Spectrum1DCanvas.html#a1fcfda8b790fd70f98f5d34bcb5c7656">Spectrum1DCanvas</a>
</li>
<li>addValue()
: <a class="el" href="classOpenMS_1_1Math_1_1BilinearInterpolation.html#aa4bf2770279318c9d30e1f26ab2c2704">BilinearInterpolation< Key, Value ></a>
, <a class="el" href="classOpenMS_1_1Math_1_1LinearInterpolation.html#adf5aa5db039c80ec47eaafa7dbef3a1a">LinearInterpolation< Key, Value ></a>
</li>
<li>addVertex()
: <a class="el" href="classOpenMS_1_1TOPPASScene.html#a690e5df66806c916c80a3ac2cc68e9c5">TOPPASScene</a>
</li>
<li>addVSpacer_()
: <a class="el" href="classOpenMS_1_1BaseVisualizerGUI.html#a1a17616e91cbfaf4d851c31b186a933b">BaseVisualizerGUI</a>
</li>
<li>addWhiteNoise_()
: <a class="el" href="classOpenMS_1_1RawMSSignalSimulation.html#a195e83f9d501e58a9b2ca18ae27768c9">RawMSSignalSimulation</a>
</li>
<li>adjustBuffer_()
: <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#a0fe9ea217282ec7fdb397bd541c4c8ad">SpectrumCanvas</a>
</li>
<li>adjustCorrectToMS1Precursor()
: <a class="el" href="classOpenMS_1_1ProcessData.html#ab05eb553a3fa7c9a7744d3e511166385">ProcessData</a>
</li>
<li>affineGapalign_()
: <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithmSpectrumAlignment.html#a7141ee1dd0cfb6b893aa77cb2a29bd9e">MapAlignmentAlgorithmSpectrumAlignment</a>
</li>
<li>align()
: <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithmPoseClustering.html#a8c5f81600ee8c144d0df1e00b21d0889">MapAlignmentAlgorithmPoseClustering</a>
</li>
<li>alignCompactFeatureMaps()
: <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithm.html#a9e66a73174d03975d49a7e9b3f8854df">MapAlignmentAlgorithm</a>
</li>
<li>alignConsensusMaps()
: <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithmIdentification.html#a7385e8b646ae9d282c3c06abf1620083">MapAlignmentAlgorithmIdentification</a>
, <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithm.html#a7385e8b646ae9d282c3c06abf1620083">MapAlignmentAlgorithm</a>
</li>
<li>alignFeatureMaps()
: <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithm.html#a32c9e0577b4455dbc2d3493079ef1c81">MapAlignmentAlgorithm</a>
, <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithmIdentification.html#a32c9e0577b4455dbc2d3493079ef1c81">MapAlignmentAlgorithmIdentification</a>
</li>
<li>alignMaps()
: <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithmIdentification.html#a9680275b7ea4140fd97583fe092a0038">MapAlignmentAlgorithmIdentification</a>
</li>
<li>alignPeakMaps()
: <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithm.html#a2038727c06b2e23bf60e1d21d7179815">MapAlignmentAlgorithm</a>
, <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithmIdentification.html#a2038727c06b2e23bf60e1d21d7179815">MapAlignmentAlgorithmIdentification</a>
, <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithmSpectrumAlignment.html#a2038727c06b2e23bf60e1d21d7179815">MapAlignmentAlgorithmSpectrumAlignment</a>
</li>
<li>alignPeptideIdentifications()
: <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithmIdentification.html#a4f223602464cbafef563871036b5dfc1">MapAlignmentAlgorithmIdentification</a>
, <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithm.html#a4f223602464cbafef563871036b5dfc1">MapAlignmentAlgorithm</a>
</li>
<li>aliphatic()
: <a class="el" href="classOpenMS_1_1AAIndex.html#ab91b07382d63b0739b68ef5ec232de4f">AAIndex</a>
</li>
<li>allInputsReady()
: <a class="el" href="classOpenMS_1_1TOPPASMergerVertex.html#aa1c1781a6b620fbc2009bf82acf73c8d">TOPPASMergerVertex</a>
, <a class="el" href="classOpenMS_1_1TOPPASVertex.html#aa1c1781a6b620fbc2009bf82acf73c8d">TOPPASVertex</a>
</li>
<li>AminoAcidModification()
: <a class="el" href="structOpenMS_1_1PepXMLFile_1_1AminoAcidModification.html#a113b9d8040e40cf4386efc3796fbebfb">PepXMLFile::AminoAcidModification</a>
</li>
<li>AnalysisSummary()
: <a class="el" href="structOpenMS_1_1MSQuantifications_1_1AnalysisSummary.html#a491366fda4329e081ce936008a1f2918">MSQuantifications::AnalysisSummary</a>
</li>
<li>analyzeHeader_()
: <a class="el" href="classOpenMS_1_1QuantitativeExperimentalDesign.html#a8ec4eaf673a5989fcb3601101c9e5703">QuantitativeExperimentalDesign</a>
</li>
<li>analyzeLCElutionPeak()
: <a class="el" href="classOpenMS_1_1LCElutionPeak.html#a6fec4c9e10aa7806d2e811e5f59f2219">LCElutionPeak</a>
</li>
<li>annotate()
: <a class="el" href="classOpenMS_1_1IDMapper.html#ad8c436deda857f332e4d843d002e0717">IDMapper</a>
</li>
<li>annotateWithID()
: <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a998e79e7149ca4ef1ca8fa1625ffa250">TOPPViewBase</a>
</li>
<li>Annotation1DDistanceItem()
: <a class="el" href="classOpenMS_1_1Annotation1DDistanceItem.html#aa76c564f230e2ecae7edf7cad0c69449">Annotation1DDistanceItem</a>
</li>
<li>Annotation1DItem()
: <a class="el" href="classOpenMS_1_1Annotation1DItem.html#abae3f1cfee1922b236e8cbcd7d88c22a">Annotation1DItem</a>
</li>
<li>Annotation1DPeakItem()
: <a class="el" href="classOpenMS_1_1Annotation1DPeakItem.html#a3f172495ec8974f361186ba58a39f26d">Annotation1DPeakItem</a>
</li>
<li>Annotation1DTextItem()
: <a class="el" href="classOpenMS_1_1Annotation1DTextItem.html#a47c54a306227ed449577281d7d77d0b0">Annotation1DTextItem</a>
</li>
<li>Annotations1DContainer()
: <a class="el" href="classOpenMS_1_1Annotations1DContainer.html#acea5695fad3ecb2a618d6639e6aa29cf">Annotations1DContainer</a>
</li>
<li>AnnotationStatistics()
: <a class="el" href="structOpenMS_1_1AnnotationStatistics.html#ab8aa0b82ba2750e3ef5922efd36cbb0e">AnnotationStatistics</a>
</li>
<li>append()
: <a class="el" href="structOpenMS_1_1Internal_1_1ToolDescription.html#ac52f71e89ad0af682d33aef3bc6002fe">ToolDescription</a>
</li>
<li>appendChromatogram()
: <a class="el" href="classOpenMS_1_1Interfaces_1_1IChromatogramsWriter.html#a23e7a268a2180b4d76f6f017dce46150">IChromatogramsWriter</a>
</li>
<li>appendSpectrum()
: <a class="el" href="classOpenMS_1_1Interfaces_1_1ISpectraWriter.html#ae51e4a0613b89735f4147c6b8373fc0a">ISpectraWriter</a>
</li>
<li>apply()
: <a class="el" href="classOpenMS_1_1FalseDiscoveryRate.html#ade46bf920d0b8471b917a6cea2bed3e6">FalseDiscoveryRate</a>
, <a class="el" href="classOpenMS_1_1IDDecoyProbability.html#ae3e0f2c179b08d9682573d8653c73637">IDDecoyProbability</a>
, <a class="el" href="classOpenMS_1_1ComplementFilter.html#adf638fa1a8dfe5de7d7fa39735e3d7fd">ComplementFilter</a>
, <a class="el" href="classOpenMS_1_1ComplementMarker.html#aa7760cc261a8f6a8ad94d9adc17d7067">ComplementMarker</a>
, <a class="el" href="classOpenMS_1_1IntensityBalanceFilter.html#adf638fa1a8dfe5de7d7fa39735e3d7fd">IntensityBalanceFilter</a>
, <a class="el" href="classOpenMS_1_1NeutralLossMarker.html#a6253a8d1984cc8d5a8eb1ebb66d67e43">NeutralLossMarker</a>
, <a class="el" href="classOpenMS_1_1IDDecoyProbability.html#a6b649f6bc70f3ef02d434996dd003e4a">IDDecoyProbability</a>
, <a class="el" href="classOpenMS_1_1IsotopeMarker.html#a6253a8d1984cc8d5a8eb1ebb66d67e43">IsotopeMarker</a>
, <a class="el" href="classOpenMS_1_1NeutralLossDiffFilter.html#adf638fa1a8dfe5de7d7fa39735e3d7fd">NeutralLossDiffFilter</a>
, <a class="el" href="classOpenMS_1_1PeakMarker.html#a304a2ce81be81bb0ebbe9632922c6bd4">PeakMarker</a>
, <a class="el" href="classOpenMS_1_1GoodDiffFilter.html#adf638fa1a8dfe5de7d7fa39735e3d7fd">GoodDiffFilter</a>
, <a class="el" href="classOpenMS_1_1PILISCrossValidation.html#a53ffde794d5404f936cbadbb7f71e7cf">PILISCrossValidation</a>
, <a class="el" href="classOpenMS_1_1IsotopeDiffFilter.html#adf638fa1a8dfe5de7d7fa39735e3d7fd">IsotopeDiffFilter</a>
, <a class="el" href="classOpenMS_1_1TransformationDescription.html#aa280f8d4730c216c58a3edd091b99767">TransformationDescription</a>
, <a class="el" href="classOpenMS_1_1DeNovoPostScoring.html#afcecb1a43e5509738e3b373f933fb00e">DeNovoPostScoring</a>
, <a class="el" href="classOpenMS_1_1FalseDiscoveryRate.html#a84e469180436c079bf54addf9a619da3">FalseDiscoveryRate</a>
, <a class="el" href="classOpenMS_1_1ConsensusID.html#a6b649f6bc70f3ef02d434996dd003e4a">ConsensusID</a>
, <a class="el" href="classOpenMS_1_1TICFilter.html#adf638fa1a8dfe5de7d7fa39735e3d7fd">TICFilter</a>
, <a class="el" href="classOpenMS_1_1FilterFunctor.html#a0d67c27ffb3b69222c17c8b3744ae645">FilterFunctor</a>
, <a class="el" href="classOpenMS_1_1DeNovoPostScoring.html#a17a7343047b24a28ab07ad21d0c38e7e">DeNovoPostScoring</a>
</li>
<li>apply_()
: <a class="el" href="classOpenMS_1_1IDDecoyProbability.html#aa486f5a5b9b7bcc22d0c570aff22c65c">IDDecoyProbability</a>
</li>
<li>applyDesign2Quantifier()
: <a class="el" href="classOpenMS_1_1QuantitativeExperimentalDesign.html#aaa5d5d863f8884124e0da54be434ef8f">QuantitativeExperimentalDesign</a>
</li>
<li>applyDesign2Resolver()
: <a class="el" href="classOpenMS_1_1QuantitativeExperimentalDesign.html#a0dd74ee63729788518db2eb92d03a3fe">QuantitativeExperimentalDesign</a>
</li>
<li>applyDilation_()
: <a class="el" href="classOpenMS_1_1MorphologicalFilter.html#a1a7fb4875ce65963e8f02b8edcb17e50">MorphologicalFilter</a>
</li>
<li>applyDilationSimple_()
: <a class="el" href="classOpenMS_1_1MorphologicalFilter.html#a87208f2bec605e3978ebce245afdaf1d">MorphologicalFilter</a>
</li>
<li>applyErosion_()
: <a class="el" href="classOpenMS_1_1MorphologicalFilter.html#a99b90fb3c757fc17a43f16f301140d57">MorphologicalFilter</a>
</li>
<li>applyErosionSimple_()
: <a class="el" href="classOpenMS_1_1MorphologicalFilter.html#ad68e8dfc0cc0e0eb3a8ea5ee03c8a5ed">MorphologicalFilter</a>
</li>
<li>applyLabelToProteinHit_()
: <a class="el" href="classOpenMS_1_1SILACLabeler.html#a29518b8aedc40c3f65f6931678f4280f">SILACLabeler</a>
</li>
<li>applyLogTransformation()
: <a class="el" href="classOpenMS_1_1Math_1_1Histogram.html#a225736fa6f5ee6ca39411e73f917e00e">Histogram< ValueType, BinSizeType ></a>
</li>
<li>applyMemberFunction()
: <a class="el" href="classOpenMS_1_1ConsensusMap.html#ac4a24ec632c6289210b0db06d7f2af9f">ConsensusMap</a>
, <a class="el" href="classOpenMS_1_1Feature.html#a2ba4cf095974c86863027d78210dc2fa">Feature</a>
, <a class="el" href="classOpenMS_1_1ConsensusMap.html#a2ba4cf095974c86863027d78210dc2fa">ConsensusMap</a>
, <a class="el" href="classOpenMS_1_1FeatureMap.html#a2ba4cf095974c86863027d78210dc2fa">FeatureMap< FeatureT ></a>
</li>
<li>applyToBaseFeature_()
: <a class="el" href="classOpenMS_1_1MapAlignmentTransformer.html#a0f5e80ace5538c9f68e907a68414a281">MapAlignmentTransformer</a>
</li>
<li>applyToConsensusFeature_()
: <a class="el" href="classOpenMS_1_1MapAlignmentTransformer.html#a1e173f739897a1e8854e8204089b3bee">MapAlignmentTransformer</a>
</li>
<li>applyTOFConversion_()
: <a class="el" href="classOpenMS_1_1TOFCalibration.html#a1ff54836126ed2745e23abe256ba16ed">TOFCalibration</a>
</li>
<li>applyToFeature_()
: <a class="el" href="classOpenMS_1_1MapAlignmentTransformer.html#ae4ad6cd3336682097c3a245c3a3a2975">MapAlignmentTransformer</a>
</li>
<li>applyTransformation_()
: <a class="el" href="classOpenMS_1_1InternalCalibration.html#a143d5d335c0bd74c729fd0a3742c5577">InternalCalibration</a>
</li>
<li>areaBegin()
: <a class="el" href="classOpenMS_1_1MSExperiment.html#a878abca09cb3f6810e634b72b99007eb">MSExperiment< PeakT, ChromatogramPeakT ></a>
</li>
<li>areaBeginConst()
: <a class="el" href="classOpenMS_1_1MSExperiment.html#aa23ed32415e6667bd2737377c24c16fb">MSExperiment< PeakT, ChromatogramPeakT ></a>
</li>
<li>areaEnd()
: <a class="el" href="classOpenMS_1_1MSExperiment.html#afb936fe46d35a9d29e36552a68c1ef2a">MSExperiment< PeakT, ChromatogramPeakT ></a>
</li>
<li>areaEndConst()
: <a class="el" href="classOpenMS_1_1MSExperiment.html#a5f9d4faff212e67330d60f958f0ce4bc">MSExperiment< PeakT, ChromatogramPeakT ></a>
</li>
<li>AreaIterator()
: <a class="el" href="classOpenMS_1_1Internal_1_1AreaIterator.html#ab879a9fb1901fe73383ba7effe49ad4c">AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT ></a>
</li>
<li>asBool_()
: <a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a5dc26987442a8a81af7bbd43e2e48f4a">XMLHandler</a>
</li>
<li>AScore()
: <a class="el" href="classOpenMS_1_1AScore.html#a25ccd4609deefc4650cd703721d8c095">AScore</a>
</li>
<li>asDateTime_()
: <a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#ae9988608535348608067112395e56562">XMLHandler</a>
</li>
<li>asDouble_()
: <a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a48e8be8cff3d25b265c4f3b6a1c446b0">XMLHandler</a>
</li>
<li>asFloat_()
: <a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#aa6a2e65ba3dc9581e4cb5a719ddace92">XMLHandler</a>
</li>
<li>asInt_()
: <a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#acce0b8fbe7a5a90972407cc4ec2ae742">XMLHandler</a>
</li>
<li>askForOutputDir()
: <a class="el" href="classOpenMS_1_1TOPPASScene.html#a0547bd4b127d0df3cd9c9a8ee69e0716">TOPPASScene</a>
</li>
<li>asMutable()
: <a class="el" href="classOpenMS_1_1FeatureHandle.html#acc3a640affdad237684c69d735ec186f">FeatureHandle</a>
</li>
<li>Assay()
: <a class="el" href="structOpenMS_1_1MSQuantifications_1_1Assay.html#ac135562f64eaa15b86eced0d832c6111">MSQuantifications::Assay</a>
</li>
<li>assembleInclusionListForProteinBasedLP_()
: <a class="el" href="classOpenMS_1_1PSLPFormulation.html#ae86c2a4f209949045780102c2476cede">PSLPFormulation</a>
</li>
<li>assign()
: <a class="el" href="classOpenMS_1_1ConstRefVector.html#ab721c41745ab19df68056b9687520764">ConstRefVector< ContainerT ></a>
, <a class="el" href="classOpenMS_1_1Internal_1_1DIntervalBase.html#a76f9ed6e5bf28216e1330c18288b5325">DIntervalBase< D ></a>
</li>
<li>assignRanks()
: <a class="el" href="classOpenMS_1_1PeptideIdentification.html#aa79958ac1cf2cb1fc4b9ae1cd766cfcb">PeptideIdentification</a>
, <a class="el" href="classOpenMS_1_1ProteinIdentification.html#aa79958ac1cf2cb1fc4b9ae1cd766cfcb">ProteinIdentification</a>
</li>
<li>assignUIDs()
: <a class="el" href="classOpenMS_1_1MSQuantifications.html#ae509bd3d7e3f1cd04573f77921c4d7ec">MSQuantifications</a>
</li>
<li>associateMS2FeatureToMS1Feature()
: <a class="el" href="classOpenMS_1_1FTPeakDetectController.html#a1816a94cbc800d65bd3c993af124dc8d">FTPeakDetectController</a>
</li>
<li>asUInt_()
: <a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a8cec7757132342e4d52771f09113378b">XMLHandler</a>
</li>
<li>AsymmetricStatistics()
: <a class="el" href="classOpenMS_1_1Math_1_1AsymmetricStatistics.html#a47373d25709fc4fce705d7f148300aea">AsymmetricStatistics< Real ></a>
</li>
<li>at()
: <a class="el" href="classOpenMS_1_1SparseVector.html#a46fcfec0fdf2b70cca5d5cbc04af58e3">SparseVector< Value ></a>
</li>
<li>attachLayer()
: <a class="el" href="classOpenMS_1_1SpectraIdentificationViewWidget.html#a7b2b45a9dd169af6940bc6337bb0836e">SpectraIdentificationViewWidget</a>
</li>
<li>Attachment()
: <a class="el" href="structOpenMS_1_1QcMLFile_1_1Attachment.html#a0414504a0dcfd9f25726fe63aeef79cb">QcMLFile::Attachment</a>
</li>
<li>attributeAsDouble_()
: <a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a8b86d61a994bea8fc963fb5ba58b53cc">XMLHandler</a>
</li>
<li>attributeAsDoubleList_()
: <a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a54f3fb485e059c3cb16afc2235635fc0">XMLHandler</a>
</li>
<li>attributeAsInt_()
: <a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#af1c6de5bf11e4cb7ec9aa007da5c163f">XMLHandler</a>
</li>
<li>attributeAsIntList_()
: <a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#abc312cc6190151275be5f511d36ca8d4">XMLHandler</a>
</li>
<li>attributeAsString_()
: <a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#ad63dfd11e1161067d1634f7b92bee573">XMLHandler</a>
</li>
<li>attributeAsStringList_()
: <a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#ac65e3edffffcaee33d18d735b8295661">XMLHandler</a>
</li>
<li>AUC()
: <a class="el" href="classOpenMS_1_1Math_1_1ROCCurve.html#a24d6d1f4ec19f75095aca7db96a318db">ROCCurve</a>
</li>
<li>autoUpdateProjections()
: <a class="el" href="classOpenMS_1_1Spectrum2DWidget.html#a07be16fbf4b70b226457b266e906cfc6">Spectrum2DWidget</a>
</li>
<li>average_()
: <a class="el" href="classOpenMS_1_1ConsensusID.html#a2bf744ef812266898863602b219b5565">ConsensusID</a>
</li>
<li>averageCoefficients_()
: <a class="el" href="classOpenMS_1_1TOFCalibration.html#a46a578e262d60a045f33bb2bd3582d33">TOFCalibration</a>
</li>
<li>averageErrors_()
: <a class="el" href="classOpenMS_1_1TOFCalibration.html#a989c5a169bb636da965233f9ec58e881">TOFCalibration</a>
</li>
<li>AverageLinkage()
: <a class="el" href="classOpenMS_1_1AverageLinkage.html#a677e8896b8d9d757a6265674f44be6bc">AverageLinkage</a>
</li>
<li>averageneFilter_()
: <a class="el" href="classOpenMS_1_1SILACFilter.html#a158d9b7cc560362c6c50b253d9ba1763">SILACFilter</a>
</li>
<li>averagePopulationAberration()
: <a class="el" href="classOpenMS_1_1ClusterAnalyzer.html#a299d8214ddc27b9c1dfa59d7ac593ae4">ClusterAnalyzer</a>
</li>
<li>AveragePosition()
: <a class="el" href="classOpenMS_1_1Math_1_1AveragePosition.html#a100748b9f2c3f422cb4ed959f3301b1f">AveragePosition< D ></a>
</li>
<li>averageSilhouetteWidth()
: <a class="el" href="classOpenMS_1_1ClusterAnalyzer.html#a65875b284ab1d8b9c346998d5630ae47">ClusterAnalyzer</a>
</li>
<li>AxisPainter()
: <a class="el" href="classOpenMS_1_1AxisPainter.html#a74ee9e122594ddadd0c52347690b2d8a">AxisPainter</a>
</li>
<li>AxisTickCalculator()
: <a class="el" href="classOpenMS_1_1AxisTickCalculator.html#aba4d225fffd1556970c78cc7bcfcfe3a">AxisTickCalculator</a>
</li>
<li>AxisWidget()
: <a class="el" href="classOpenMS_1_1AxisWidget.html#ac71806dcdc90ea75b75da6dc55eda0d1">AxisWidget</a>
</li>
</ul>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:20:59 using doxygen 1.8.5</font></TD>
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