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<HTML>
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<TITLE>Class Members - Functions</TITLE>
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<h3><a class="anchor" id="index_c"></a>- c -</h3><ul>
<li>CachedmzML()
: <a class="el" href="classOpenMS_1_1CachedmzML.html#a1806a02ca770647f159046fa0960cb6d">CachedmzML</a>
</li>
<li>calcCentroids()
: <a class="el" href="classOpenMS_1_1CentroidData.html#ac2b361ebb05085922d0064aa1ca8fe1c">CentroidData</a>
</li>
<li>calcChargeStateIntensities_()
: <a class="el" href="classOpenMS_1_1ProtonDistributionModel.html#ad5d0c039e4ec9961378dd0d556e95d2c">ProtonDistributionModel</a>
</li>
<li>calcElutionFitScore()
: <a class="el" href="classOpenMS_1_1EmgScoring.html#a91a12a6c61f55d0f433b2630f1d0fd9a">EmgScoring</a>
</li>
<li>calcGridLines()
: <a class="el" href="classOpenMS_1_1AxisTickCalculator.html#a22cb2007954ee6d65fb9ff478fa8b9b1">AxisTickCalculator</a>
</li>
<li>calcLibraryScore()
: <a class="el" href="classOpenSwath_1_1MRMScoring.html#a98dc2d72148812f85bdf1abb54f5a054">MRMScoring</a>
</li>
<li>calcLogGridLines()
: <a class="el" href="classOpenMS_1_1AxisTickCalculator.html#a9cff9ab49ecbd1e36b3b677ac7cf20f8">AxisTickCalculator</a>
</li>
<li>calcRTScore()
: <a class="el" href="classOpenSwath_1_1MRMScoring.html#aea1fac4fd4e54dcc17bc7571556005c6">MRMScoring</a>
</li>
<li>calcSNScore()
: <a class="el" href="classOpenSwath_1_1MRMScoring.html#acd124754736912b00d86f5d6f45b75ce">MRMScoring</a>
</li>
<li>calculate_lda_prescore()
: <a class="el" href="structOpenMS_1_1OpenSwath__Scores.html#aca437d1a16d43a1e055a4fc295a2aa1e">OpenSwath_Scores</a>
</li>
<li>calculate_swath_lda_prescore()
: <a class="el" href="structOpenMS_1_1OpenSwath__Scores.html#a6509c5d12cc9ba3417f9d46314345bc9">OpenSwath_Scores</a>
</li>
<li>calculateAddInfo_()
: <a class="el" href="classOpenMS_1_1PeakIntensityPredictor.html#a9ffa9b685036c2da0261a8d3dbbf3ae9">PeakIntensityPredictor</a>
</li>
<li>calculateAvgWeight_()
: <a class="el" href="classOpenMS_1_1ElementDB.html#a0156060a880db6fb83c59826ae2bec1c">ElementDB</a>
</li>
<li>calculateBackwardPart_()
: <a class="el" href="classOpenMS_1_1HiddenMarkovModel.html#ada5b00af7c5a1f97457e125032394264">HiddenMarkovModel</a>
</li>
<li>calculateBgEstimation_()
: <a class="el" href="classOpenMS_1_1MRMTransitionGroupPicker.html#a1cafa0d1e78158d43532702d3c91eeb2">MRMTransitionGroupPicker</a>
</li>
<li>calculateCalibCoeffs_()
: <a class="el" href="classOpenMS_1_1TOFCalibration.html#a6e9d8f384885c4056bbc412334f48df2">TOFCalibration</a>
</li>
<li>calculateEmissionProbabilities()
: <a class="el" href="classOpenMS_1_1HiddenMarkovModel.html#a1ead6f5add2e2de1a8b54aec73090e55">HiddenMarkovModel</a>
</li>
<li>calculateFDRs_()
: <a class="el" href="classOpenMS_1_1FalseDiscoveryRate.html#aa62b530f09b9276db563b40a4e862104">FalseDiscoveryRate</a>
</li>
<li>calculateForwardPart_()
: <a class="el" href="classOpenMS_1_1HiddenMarkovModel.html#aa0f6be8ca5cd4087e8775d5d228ad9f5">HiddenMarkovModel</a>
</li>
<li>calculateGaussTable()
: <a class="el" href="classOpenMS_1_1SVMWrapper.html#aefa874c6efc08abb86a1e0dfde748916">SVMWrapper</a>
</li>
<li>calculateGB()
: <a class="el" href="classOpenMS_1_1AAIndex.html#ad1c6ae31304ecc2776a8777ea58d2786">AAIndex</a>
</li>
<li>calculateGridLines_()
: <a class="el" href="classOpenMS_1_1Spectrum3DOpenGLCanvas.html#abbc67f3b3b1117100482e9a1faebf9cf">Spectrum3DOpenGLCanvas</a>
</li>
<li>calculateLabelsAndMassShifts()
: <a class="el" href="classOpenMS_1_1SILACAnalyzer.html#aa9f0460bec4f7066c754fc37a7dcc9eb">SILACAnalyzer</a>
</li>
<li>calculateMonoWeight_()
: <a class="el" href="classOpenMS_1_1ElementDB.html#ab10e4d203d5f354039509369fc1dcf20">ElementDB</a>
</li>
<li>calculateMT_()
: <a class="el" href="classOpenMS_1_1RTSimulation.html#ae771da7f17dc446c06274e2f068ba8df">RTSimulation</a>
</li>
<li>calculateProteinProbabilities()
: <a class="el" href="classOpenMS_1_1PSProteinInference.html#a5fe50581933d62f5c82af2b093ac18e6">PSProteinInference</a>
</li>
<li>calculateProtonDistribution_()
: <a class="el" href="classOpenMS_1_1ProtonDistributionModel.html#a9cdd344a3df943090411aec15270c076">ProtonDistributionModel</a>
</li>
<li>calculateProtonDistributionCharge1_()
: <a class="el" href="classOpenMS_1_1ProtonDistributionModel.html#a3352d5f0f3b9cbeafed385e3cdc2b7b2">ProtonDistributionModel</a>
</li>
<li>calculateProtonDistributionCharge2_()
: <a class="el" href="classOpenMS_1_1ProtonDistributionModel.html#aacc20fa10b2727afad06b263984075c4">ProtonDistributionModel</a>
</li>
<li>calculateProtonDistributionGreater2_()
: <a class="el" href="classOpenMS_1_1ProtonDistributionModel.html#a7fb5032f5fd2d12e2ce2d0646fbaaf50">ProtonDistributionModel</a>
</li>
<li>calculateProtonDistributionIonPair_()
: <a class="el" href="classOpenMS_1_1ProtonDistributionModel.html#afca7fd50e8be58aa5e800a66e32e93a2">ProtonDistributionModel</a>
</li>
<li>calculateSwathScores_()
: <a class="el" href="classOpenMS_1_1MRMFeatureFinderScoring.html#a7aa7123edb723725ec69f259c69d46d0">MRMFeatureFinderScoring</a>
</li>
<li>calculateXICs_()
: <a class="el" href="classOpenMS_1_1OfflinePrecursorIonSelection.html#a09cf655b910fa7166cd8b27d17e02453">OfflinePrecursorIonSelection</a>
, <a class="el" href="classOpenMS_1_1PSLPFormulation.html#a8a38d766081c104c51a498b4d836a456">PSLPFormulation</a>
</li>
<li>calcXcorrCoelutionScore()
: <a class="el" href="classOpenSwath_1_1MRMScoring.html#a7318a059862436d75501b17a048361c9">MRMScoring</a>
</li>
<li>calcXcorrCoelutionScore_weighted()
: <a class="el" href="classOpenSwath_1_1MRMScoring.html#a4ef78175311c0e617f0ea805399af429">MRMScoring</a>
</li>
<li>calcXcorrShape_score()
: <a class="el" href="classOpenSwath_1_1MRMScoring.html#a3c78020edaa988b8bf003411ab54de34">MRMScoring</a>
</li>
<li>calcXcorrShape_score_weighted()
: <a class="el" href="classOpenSwath_1_1MRMScoring.html#ac8714e0dfa7aeafe2391191c18150cb5">MRMScoring</a>
</li>
<li>calibrate()
: <a class="el" href="classOpenMS_1_1TOFCalibration.html#a6841ec670af59eab6ba6d998710e7197">TOFCalibration</a>
</li>
<li>calibrateMapGlobally()
: <a class="el" href="classOpenMS_1_1InternalCalibration.html#ae16f418bb5c7ac54002dce6c81a59ca3">InternalCalibration</a>
</li>
<li>calibrateMapList()
: <a class="el" href="classOpenMS_1_1InternalCalibration.html#a34c53fde5084c75359a06d124b2ff4e6">InternalCalibration</a>
</li>
<li>calibrateMapSpectrumwise()
: <a class="el" href="classOpenMS_1_1InternalCalibration.html#a1651981607d6c86252b9ab64e5f7996c">InternalCalibration</a>
</li>
<li>canModificationBeApplied_()
: <a class="el" href="classOpenMS_1_1SILACLabeler.html#a8ad18a976265342bf1ef12dca07b966f">SILACLabeler</a>
</li>
<li>canvas()
: <a class="el" href="classOpenMS_1_1Spectrum1DWidget.html#ac45d8aaff4d281a9c415f2ff030f19f1">Spectrum1DWidget</a>
, <a class="el" href="classOpenMS_1_1Spectrum2DWidget.html#a30874470629818c311e8d04475172b67">Spectrum2DWidget</a>
, <a class="el" href="classOpenMS_1_1Spectrum3DWidget.html#a612fbab835e6dd7ee2e39bfe3d942767">Spectrum3DWidget</a>
, <a class="el" href="classOpenMS_1_1SpectrumWidget.html#ab69081e8470c653876eaf886f1231aaa">SpectrumWidget</a>
</li>
<li>capacity()
: <a class="el" href="classOpenMS_1_1ConstRefVector.html#ab009512ed674371bda87b4a4a3fc7305">ConstRefVector< ContainerT ></a>
</li>
<li>cellClicked_()
: <a class="el" href="classOpenMS_1_1SpectraIdentificationViewWidget.html#a954be5fb9fb0b0d18cc38f97c89fdd2b">SpectraIdentificationViewWidget</a>
</li>
<li>cellindexAtClustercenter_()
: <a class="el" href="classOpenMS_1_1HashGrid.html#a08d0edc9a49c966d98fb44f0445fae03">HashGrid< Cluster ></a>
</li>
<li>center()
: <a class="el" href="classOpenMS_1_1Internal_1_1DIntervalBase.html#a8c547ef54abdc9ad988d5fc665878d05">DIntervalBase< D ></a>
</li>
<li>centerOfBin()
: <a class="el" href="classOpenMS_1_1Math_1_1Histogram.html#a91fd81bb21b92356442d0dfe8c4ee2f0">Histogram< ValueType, BinSizeType ></a>
</li>
<li>CentroidData()
: <a class="el" href="classOpenMS_1_1CentroidData.html#ad7fd096e02f88459bbc12c523e05e36a">CentroidData</a>
</li>
<li>centroidDataModus()
: <a class="el" href="classOpenMS_1_1SuperHirnParameters.html#a4de3de0d2a268e27044b47c93a5cf399">SuperHirnParameters</a>
</li>
<li>CentroidPeak()
: <a class="el" href="classOpenMS_1_1CentroidPeak.html#a7028e2c90cad678b98109cc1ec5db8d9">CentroidPeak</a>
</li>
<li>changedParameter()
: <a class="el" href="classOpenMS_1_1TOPPASScene.html#a0c3ab898e57625b1aeaf38cdf2ea5960">TOPPASScene</a>
</li>
<li>changeElutionTimesByFactor()
: <a class="el" href="classOpenMS_1_1FeatureLCProfile.html#a683b82f9f511dcad4e1a2cfc7575c625">FeatureLCProfile</a>
</li>
<li>changeLabel()
: <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a50353dfbc139477f20cd766498e80e6f">TOPPViewBase</a>
</li>
<li>changeLayerFilterState()
: <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#a9b8b9f25d9b1e627f5c97e2316c1ffdc">SpectrumCanvas</a>
</li>
<li>changeLayerFlag()
: <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a731a8164f79220674aed6d51f4ab94d0">TOPPViewBase</a>
</li>
<li>changeLegendVisibility()
: <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#ae3b0c35949fdf49f47eb273ea0d0cd42">SpectrumCanvas</a>
, <a class="el" href="classOpenMS_1_1SpectrumWidget.html#ae3b0c35949fdf49f47eb273ea0d0cd42">SpectrumWidget</a>
</li>
<li>changeUnassigned()
: <a class="el" href="classOpenMS_1_1TOPPViewBase.html#ad1d192c611ee3bb576e40c6bfbcdcd6c">TOPPViewBase</a>
</li>
<li>changeVisibility()
: <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#a7042c80c9509f90290b3a68aaa9078a8">SpectrumCanvas</a>
</li>
<li>changeVisibleArea_()
: <a class="el" href="classOpenMS_1_1Spectrum1DCanvas.html#a9d3a7ecb4f35105e7e35f55df4604d2b">Spectrum1DCanvas</a>
, <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#a7c19ac73e325d155a2044ca4b4865f02">SpectrumCanvas</a>
</li>
<li>characters()
: <a class="el" href="classOpenMS_1_1ConsensusXMLFile.html#ad14063bc858ff5ef2f218f9ec3efa1a6">ConsensusXMLFile</a>
, <a class="el" href="classOpenMS_1_1CVMappingFile.html#ad26a9c1a4e8450455de2fc5a5a136053">CVMappingFile</a>
, <a class="el" href="classOpenMS_1_1FeatureXMLFile.html#ad14063bc858ff5ef2f218f9ec3efa1a6">FeatureXMLFile</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1MascotXMLHandler.html#af140757317fa5af880d34690b3e86922">MascotXMLHandler</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1MzDataHandler.html#a742bdba7e6348fe6c549aada2a116944">MzDataHandler< MapType ></a>
, <a class="el" href="classOpenMS_1_1Internal_1_1MzIdentMLHandler.html#ad14063bc858ff5ef2f218f9ec3efa1a6">MzIdentMLHandler</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1MzMLHandler.html#a742bdba7e6348fe6c549aada2a116944">MzMLHandler< MapType ></a>
, <a class="el" href="classOpenMS_1_1Internal_1_1MzQuantMLHandler.html#ad14063bc858ff5ef2f218f9ec3efa1a6">MzQuantMLHandler</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1MzXMLHandler.html#a742bdba7e6348fe6c549aada2a116944">MzXMLHandler< MapType ></a>
, <a class="el" href="classOpenMS_1_1Internal_1_1PTMXMLHandler.html#af140757317fa5af880d34690b3e86922">PTMXMLHandler</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1ToolDescriptionHandler.html#ad14063bc858ff5ef2f218f9ec3efa1a6">ToolDescriptionHandler</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1TraMLHandler.html#ad14063bc858ff5ef2f218f9ec3efa1a6">TraMLHandler</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1UnimodXMLHandler.html#ad26a9c1a4e8450455de2fc5a5a136053">UnimodXMLHandler</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#ad14063bc858ff5ef2f218f9ec3efa1a6">XMLHandler</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1XTandemInfileXMLHandler.html#ad26a9c1a4e8450455de2fc5a5a136053">XTandemInfileXMLHandler</a>
, <a class="el" href="classOpenMS_1_1OMSSAXMLFile.html#ad26a9c1a4e8450455de2fc5a5a136053">OMSSAXMLFile</a>
, <a class="el" href="classOpenMS_1_1QcMLFile.html#ad14063bc858ff5ef2f218f9ec3efa1a6">QcMLFile</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1SemanticValidator.html#ad26a9c1a4e8450455de2fc5a5a136053">SemanticValidator</a>
, <a class="el" href="classOpenMS_1_1XTandemXMLFile.html#ad26a9c1a4e8450455de2fc5a5a136053">XTandemXMLFile</a>
</li>
<li>ChargedIndexSet()
: <a class="el" href="structOpenMS_1_1IsotopeCluster_1_1ChargedIndexSet.html#ab1aafa4407848848e4db97056404501b">IsotopeCluster::ChargedIndexSet</a>
</li>
<li>ChargePair()
: <a class="el" href="classOpenMS_1_1ChargePair.html#a5f86d4187ae8e9d690ca40baa3e43d6f">ChargePair</a>
</li>
<li>chargeTestworthy_()
: <a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#aa67069d72956b5d8d3fdd0108ce37b31">FeatureDeconvolution</a>
</li>
<li>chauvenet()
: <a class="el" href="classOpenMS_1_1MRMRTNormalizer.html#a33bb531d7b4c02a5cf48aced48e7f69a">MRMRTNormalizer</a>
</li>
<li>chauvenet_probability()
: <a class="el" href="classOpenMS_1_1MRMRTNormalizer.html#ac224bc5bdde5e5d1692f50dcaf763847">MRMRTNormalizer</a>
</li>
<li>check_()
: <a class="el" href="classOpenMS_1_1DataFilterDialog.html#a5a86a0d5e74eebe0f0f3cf750aa73f0c">DataFilterDialog</a>
</li>
<li>check_AC()
: <a class="el" href="classOpenMS_1_1SHFeature.html#ab3eaf106a8a5ecb3dc2d6c1e9740d0e2">SHFeature</a>
</li>
<li>check_elution_peak()
: <a class="el" href="classOpenMS_1_1ProcessData.html#a847c1fa039b794c475ffd4b19cf6d7fd">ProcessData</a>
</li>
<li>check_elution_peak_belong()
: <a class="el" href="classOpenMS_1_1ProcessData.html#af37cf479432dc8324332e943bfb5068b">ProcessData</a>
</li>
<li>check_feature_list_empty()
: <a class="el" href="classOpenMS_1_1LCMS.html#ae7b27617696a8b097d00bbb3c5b1aa70">LCMS</a>
</li>
<li>check_LCMS_name()
: <a class="el" href="classOpenMS_1_1LCMS.html#acfdae0e8ef51f7b943aa4f218eae5f29">LCMS</a>
</li>
<li>check_match_by_id()
: <a class="el" href="classOpenMS_1_1SHFeature.html#ada273b42e4e6feb6ce6ddfe87a2009ad">SHFeature</a>
</li>
<li>check_MODIFICATION()
: <a class="el" href="classOpenMS_1_1MS2Info.html#af221c143d5345837b8c181a160968862">MS2Info</a>
</li>
<li>check_MS2_empty()
: <a class="el" href="classOpenMS_1_1SHFeature.html#adaed4822839840a6d627af5ffb68f1bd">SHFeature</a>
</li>
<li>check_MZ_occurence()
: <a class="el" href="classOpenMS_1_1ProcessData.html#a9fc71814fed3c2e284f34f81264dc04b">ProcessData</a>
</li>
<li>check_raw_spec_name_empty()
: <a class="el" href="classOpenMS_1_1LCMS.html#ac4ab0746d6c0228e36102f7d688b3a81">LCMS</a>
</li>
<li>checkBelonging()
: <a class="el" href="classOpenMS_1_1BackgroundIntensityBin.html#aab700e40f0a98a520885031c4bcd9968">BackgroundIntensityBin</a>
</li>
<li>checkCompliance()
: <a class="el" href="classOpenMS_1_1BinnedSpectrum.html#a416b1ffaa72b032c867fe90eed6df141">BinnedSpectrum</a>
</li>
<li>checkDBVersion()
: <a class="el" href="classOpenMS_1_1DBAdapter.html#af675d68d979fb34924c4b6a8b3738b92">DBAdapter</a>
</li>
<li>checkDefaults()
: <a class="el" href="classOpenMS_1_1Param.html#a1b94fbaa3f9c9ef561b46897770ea08e">Param</a>
</li>
<li>checkedToDouble_()
: <a class="el" href="classOpenMS_1_1EDTAFile.html#a78ed4f69956cb661e4e5bbf3fcf877c7">EDTAFile</a>
</li>
<li>checkedToInt_()
: <a class="el" href="classOpenMS_1_1EDTAFile.html#aafa0f703b3476606e338818f9da7cdb7">EDTAFile</a>
</li>
<li>checkFeatureQuality_()
: <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#aef59aef1baf90c9ea2376d677c9bf79d">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a>
</li>
<li>checkFormula_()
: <a class="el" href="classOpenMS_1_1Adduct.html#a1bb00c258a86107c84436713b562f5f1">Adduct</a>
</li>
<li>checkForRequiredUserParams_()
: <a class="el" href="classOpenMS_1_1PrecursorIonSelection.html#a0ba2af27eed4a20a90c2bcbf38fb99c2">PrecursorIonSelection</a>
</li>
<li>checkFWHM_()
: <a class="el" href="classOpenMS_1_1OptimizePeakDeconvolution.html#af047ae562a0d8e6d44e39d056a5c57ed">OptimizePeakDeconvolution</a>
</li>
<li>checkHits_()
: <a class="el" href="classOpenMS_1_1IDMapper.html#a8295835c054b639df085f1eac7dcae26">IDMapper</a>
</li>
<li>checkIds_()
: <a class="el" href="classOpenMS_1_1BaseGroupFinder.html#ae6a31106f2c6fab5214e085fb5168903">BaseGroupFinder</a>
</li>
<li>checkIfFeatureExtractionExists()
: <a class="el" href="classOpenMS_1_1FTPeakDetectController.html#a398fc085f76346c07b771c93fdeebb20">FTPeakDetectController</a>
</li>
<li>checkIfIniParametersAreApplicable_()
: <a class="el" href="classOpenMS_1_1TOPPBase.html#ae08d8cef4a574ae28416e1b7fd82dcd1">TOPPBase</a>
</li>
<li>checkIfWeAreDone()
: <a class="el" href="classOpenMS_1_1TOPPASScene.html#ab027329d51902f7e0ee14e8cdef6321b">TOPPASScene</a>
</li>
<li>checkIsotopeBelongingAndAdjustMass()
: <a class="el" href="classOpenMS_1_1MSPeak.html#a02fcba7e9532710e9b2428092500cc03">MSPeak</a>
</li>
<li>checkMassRanges_()
: <a class="el" href="classOpenMS_1_1OfflinePrecursorIonSelection.html#acca2e18b840cc4b903f2958efca7aa1a">OfflinePrecursorIonSelection</a>
</li>
<li>checkMassType_()
: <a class="el" href="classOpenMS_1_1IDMapper.html#a601aa4a522119339bb02264698bd589e">IDMapper</a>
</li>
<li>checkMaximalRTSpan()
: <a class="el" href="classOpenMS_1_1EGHTraceFitter.html#aecd366afa85dccec2192de9d8dc1e0e0">EGHTraceFitter< PeakType ></a>
, <a class="el" href="classOpenMS_1_1GaussTraceFitter.html#aecd366afa85dccec2192de9d8dc1e0e0">GaussTraceFitter< PeakType ></a>
, <a class="el" href="classOpenMS_1_1TraceFitter.html#af72d2c9ae5ecbd8b8d4605fbbef613cc">TraceFitter< PeakType ></a>
</li>
<li>checkMinimalRTSpan()
: <a class="el" href="classOpenMS_1_1EGHTraceFitter.html#a29da0a7e5ad702ed2425e8c5244eb61d">EGHTraceFitter< PeakType ></a>
, <a class="el" href="classOpenMS_1_1GaussTraceFitter.html#a69c967cdc32e6fd10e80f0b2a31e6bf4">GaussTraceFitter< PeakType ></a>
, <a class="el" href="classOpenMS_1_1TraceFitter.html#a2190523e8d48946faff97a41131fcf92">TraceFitter< PeakType ></a>
</li>
<li>checkName_()
: <a class="el" href="classOpenMS_1_1ControlledVocabulary.html#a7deacaa9770accdbf7fa60dff30a944b">ControlledVocabulary</a>
</li>
<li>checkNeighbour_()
: <a class="el" href="classOpenMS_1_1SimpleExtender.html#a8597c0a5982f48f9a8387e286b0251b0">SimpleExtender< PeakType, FeatureType ></a>
</li>
<li>checkParam_()
: <a class="el" href="classOpenMS_1_1TOPPBase.html#ab27e7a49941fc5131d7bc7cb7f4014d5">TOPPBase</a>
</li>
<li>checkParameters_()
: <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithmIdentification.html#a439bc5d1d0e0399e00af324533baf50c">MapAlignmentAlgorithmIdentification</a>
</li>
<li>checkPositionForPlausibility_()
: <a class="el" href="classOpenMS_1_1IsotopeWaveletTransform.html#a0cddf185d4cd401acef976e6798ab7c0">IsotopeWaveletTransform< PeakType ></a>
</li>
<li>checkPPMTheoModel_()
: <a class="el" href="classOpenMS_1_1IsotopeWaveletTransform.html#a750c0f353f03bb3361b276497b2c216b">IsotopeWaveletTransform< PeakType ></a>
</li>
<li>checkPreferences_()
: <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a71e5e96de46a53e2a178d74bacb1148f">TOPPViewBase</a>
</li>
<li>checkReferenceIds_()
: <a class="el" href="classOpenMS_1_1InternalCalibration.html#a103a7b7cbdc2702033468a091b4f6a26">InternalCalibration</a>
</li>
<li>checkSize()
: <a class="el" href="classOpenMS_1_1SaveImageDialog.html#a8f090cfa4efb131a6eedabd3c9e6506c">SaveImageDialog</a>
</li>
<li>checkSolution_()
: <a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#a4f9eda9404cdcea193c2da7a6442dfda">FeatureDeconvolution</a>
</li>
<li>checkSwathMap()
: <a class="el" href="classOpenMS_1_1OpenSwathHelper.html#ad407a5263ca24e0d1f66817ed1de792b">OpenSwathHelper</a>
</li>
<li>checkSwathMapAndSelectTransitions()
: <a class="el" href="classOpenMS_1_1OpenSwathHelper.html#a58f5957aa8b970648d7cb611c76ed0f9">OpenSwathHelper</a>
</li>
<li>checkValidity_()
: <a class="el" href="classOpenMS_1_1TOPPASInputFileDialog.html#aeabe7a392b1bede5b160fd6a6fd9bb53">TOPPASInputFileDialog</a>
, <a class="el" href="classOpenMS_1_1TOPPASIOMappingDialog.html#aeabe7a392b1bede5b160fd6a6fd9bb53">TOPPASIOMappingDialog</a>
, <a class="el" href="classOpenMS_1_1TOPPASOutputFilesDialog.html#aeabe7a392b1bede5b160fd6a6fd9bb53">TOPPASOutputFilesDialog</a>
</li>
<li>chooseDecoys_()
: <a class="el" href="classOpenMS_1_1ConfidenceScoring.html#a259c0f7175b269ac90b9838030d24343">ConfidenceScoring</a>
</li>
<li>chooseElutionProfile_()
: <a class="el" href="classOpenMS_1_1RawMSSignalSimulation.html#a7a01ecba081141d30e617eec0bfbff03">RawMSSignalSimulation</a>
</li>
<li>chooseTraceFitter_()
: <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#ad832d6128e519d1c6a7fefd89158c37e">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a>
</li>
<li>chop()
: <a class="el" href="classOpenMS_1_1String.html#a4ab5e5a6722981a2f8d7c971b30c1f65">String</a>
</li>
<li>Chromatogram()
: <a class="el" href="structOpenSwath_1_1Chromatogram.html#a45a1ae3641d8ed6b63623ac65dbb58c3">Chromatogram</a>
</li>
<li>chromatogram_flag_set()
: <a class="el" href="classOpenMS_1_1LayerData.html#a94a7c3db089d482870983a4287e5bf25">LayerData</a>
</li>
<li>ChromatogramExtractor()
: <a class="el" href="classOpenMS_1_1ChromatogramExtractor.html#aebc0d6b93b7fbc4d7a7b1230d55489a0">ChromatogramExtractor</a>
</li>
<li>ChromatogramMeta()
: <a class="el" href="structOpenSwath_1_1ChromatogramMeta.html#aefb81402a31f00e562322aebf6c4dfff">ChromatogramMeta</a>
</li>
<li>ChromatogramPeak()
: <a class="el" href="classOpenMS_1_1ChromatogramPeak.html#add629c33936b478eabfaf7499efc06ee">ChromatogramPeak</a>
</li>
<li>ChromatogramSettings()
: <a class="el" href="classOpenMS_1_1ChromatogramSettings.html#a8ead37c592b183dea7a55de90ddcff39">ChromatogramSettings</a>
</li>
<li>ChromatogramTools()
: <a class="el" href="classOpenMS_1_1ChromatogramTools.html#a41bd54ebbe20b4f33112d5a1e979a870">ChromatogramTools</a>
</li>
<li>classifyIsotopes_()
: <a class="el" href="classOpenMS_1_1CompNovoIonScoringBase.html#adf430f3ff244e742494ffc52413671c0">CompNovoIonScoringBase</a>
</li>
<li>cleanDeconvPeaks()
: <a class="el" href="classOpenMS_1_1Deisotoper.html#a9f51cfb475a86654c21358be1887d517">Deisotoper</a>
</li>
<li>cleanUpTransition()
: <a class="el" href="classOpenMS_1_1TransitionTSVReader.html#a26336fdbb6f46a7dc7aff771036e95b3">TransitionTSVReader</a>
</li>
<li>clear()
: <a class="el" href="classOpenMS_1_1HiddenMarkovModel.html#ac8bb3912a3ce86b15842e79d0b421204">HiddenMarkovModel</a>
, <a class="el" href="classOpenMS_1_1TargetedExperiment.html#af072fc84225ae927f7527f208ea86cbd">TargetedExperiment</a>
, <a class="el" href="classOpenMS_1_1IsotopeDistribution.html#ac8bb3912a3ce86b15842e79d0b421204">IsotopeDistribution</a>
, <a class="el" href="classOpenMS_1_1ims_1_1IMSAlphabet.html#ac8bb3912a3ce86b15842e79d0b421204">IMSAlphabet</a>
, <a class="el" href="classOpenMS_1_1HashGrid.html#ac8bb3912a3ce86b15842e79d0b421204">HashGrid< Cluster ></a>
, <a class="el" href="classOpenMS_1_1ConstRefVector.html#ac8bb3912a3ce86b15842e79d0b421204">ConstRefVector< ContainerT ></a>
, <a class="el" href="classOpenMS_1_1ConvexHull2D.html#ac8bb3912a3ce86b15842e79d0b421204">ConvexHull2D</a>
, <a class="el" href="classOpenMS_1_1Date.html#ac8bb3912a3ce86b15842e79d0b421204">Date</a>
, <a class="el" href="classOpenMS_1_1DateTime.html#ac8bb3912a3ce86b15842e79d0b421204">DateTime</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1DIntervalBase.html#ac8bb3912a3ce86b15842e79d0b421204">DIntervalBase< D ></a>
, <a class="el" href="classOpenMS_1_1DistanceMatrix.html#ac8bb3912a3ce86b15842e79d0b421204">DistanceMatrix< Value ></a>
, <a class="el" href="classOpenMS_1_1DPosition.html#ac8bb3912a3ce86b15842e79d0b421204">DPosition< D, TCoordinateType ></a>
, <a class="el" href="classOpenMS_1_1Matrix.html#ac8bb3912a3ce86b15842e79d0b421204">Matrix< Value ></a>
, <a class="el" href="classOpenMS_1_1Param.html#ac8bb3912a3ce86b15842e79d0b421204">Param</a>
, <a class="el" href="classOpenMS_1_1SparseVector.html#ac8bb3912a3ce86b15842e79d0b421204">SparseVector< Value ></a>
, <a class="el" href="classOpenMS_1_1DataFilters.html#ac8bb3912a3ce86b15842e79d0b421204">DataFilters</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1StringManager.html#ac8bb3912a3ce86b15842e79d0b421204">StringManager</a>
, <a class="el" href="classOpenMS_1_1ConsensusFeature.html#ac8bb3912a3ce86b15842e79d0b421204">ConsensusFeature</a>
, <a class="el" href="classOpenMS_1_1ConsensusMap.html#a7b5660c6199fa9d5fef65974c7e3e733">ConsensusMap</a>
, <a class="el" href="classOpenMS_1_1FeatureMap.html#a7b5660c6199fa9d5fef65974c7e3e733">FeatureMap< FeatureT ></a>
, <a class="el" href="classOpenMS_1_1MSChromatogram.html#af072fc84225ae927f7527f208ea86cbd">MSChromatogram< PeakT ></a>
, <a class="el" href="classOpenMS_1_1MSExperiment.html#af072fc84225ae927f7527f208ea86cbd">MSExperiment< PeakT, ChromatogramPeakT ></a>
, <a class="el" href="classOpenMS_1_1MSSpectrum.html#af072fc84225ae927f7527f208ea86cbd">MSSpectrum< PeakT ></a>
, <a class="el" href="structOpenMS_1_1PeakIndex.html#ac8bb3912a3ce86b15842e79d0b421204">PeakIndex</a>
, <a class="el" href="classOpenMS_1_1Math_1_1AveragePosition.html#ac8bb3912a3ce86b15842e79d0b421204">AveragePosition< D ></a>
, <a class="el" href="classOpenMS_1_1Math_1_1BasicStatistics.html#ac8bb3912a3ce86b15842e79d0b421204">BasicStatistics< RealT ></a>
, <a class="el" href="classOpenMS_1_1MetaInfo.html#ac8bb3912a3ce86b15842e79d0b421204">MetaInfo</a>
, <a class="el" href="classOpenMS_1_1StopWatch.html#ac8bb3912a3ce86b15842e79d0b421204">StopWatch</a>
, <a class="el" href="classOpenMS_1_1ParamEditor.html#ac8bb3912a3ce86b15842e79d0b421204">ParamEditor</a>
, <a class="el" href="classOpenMS_1_1TOPPASResources.html#ac8bb3912a3ce86b15842e79d0b421204">TOPPASResources</a>
</li>
<li>clear_()
: <a class="el" href="classOpenMS_1_1ElementDB.html#a81187e7a03d6d33789d0973b7a66367b">ElementDB</a>
, <a class="el" href="classOpenMS_1_1ResidueDB.html#a81187e7a03d6d33789d0973b7a66367b">ResidueDB</a>
, <a class="el" href="classOpenMS_1_1DataValue.html#a81187e7a03d6d33789d0973b7a66367b">DataValue</a>
, <a class="el" href="classOpenMS_1_1MetaInfoVisualizer.html#a81187e7a03d6d33789d0973b7a66367b">MetaInfoVisualizer</a>
</li>
<li>clear_feature_list()
: <a class="el" href="classOpenMS_1_1LCMS.html#a18b9e84a938c4d197eea7bf6d56e5f91">LCMS</a>
</li>
<li>clearCache()
: <a class="el" href="classOpenMS_1_1Logger_1_1LogStreamBuf.html#a91b1d39c78e5682128a85ce27d4392e8">LogStreamBuf</a>
</li>
<li>clearChildIds_()
: <a class="el" href="classOpenMS_1_1BinnedSpectrum.html#aca192a8c89187e4311eacc9daa073c7b">BinnedSpectrum</a>
, <a class="el" href="classOpenMS_1_1PersistentObject.html#af4bfd2fe1ed3e2440b51fcd77cfe06f7">PersistentObject</a>
, <a class="el" href="classOpenMS_1_1MSChromatogram.html#aca192a8c89187e4311eacc9daa073c7b">MSChromatogram< PeakT ></a>
, <a class="el" href="classOpenMS_1_1MSExperiment.html#aca192a8c89187e4311eacc9daa073c7b">MSExperiment< PeakT, ChromatogramPeakT ></a>
, <a class="el" href="classOpenMS_1_1MSSpectrum.html#aca192a8c89187e4311eacc9daa073c7b">MSSpectrum< PeakT ></a>
</li>
<li>clearEluents()
: <a class="el" href="classOpenMS_1_1Gradient.html#ab239d18d0cb05168a3489bd6bdc500ac">Gradient</a>
</li>
<li>clearId()
: <a class="el" href="classOpenMS_1_1PersistentObject.html#ad88b5f0f6c90153e67e86b0b761e54c4">PersistentObject</a>
</li>
<li>clearInitialTransitionProbabilities()
: <a class="el" href="classOpenMS_1_1HiddenMarkovModel.html#a09c185c16ef588c99f18a59e32be5bb7">HiddenMarkovModel</a>
</li>
<li>clearMetaDataArrays()
: <a class="el" href="classOpenMS_1_1MSExperiment.html#a30581229b2239b7f01ad77aa8cec118c">MSExperiment< PeakT, ChromatogramPeakT ></a>
</li>
<li>clearMetaInfo()
: <a class="el" href="classOpenMS_1_1MetaInfoInterface.html#ae5b77ecfe9182ebd648d54ca1137eba0">MetaInfoInterface</a>
</li>
<li>clearMSLevels()
: <a class="el" href="classOpenMS_1_1PeakFileOptions.html#aae867dfce18b51cb9a15800cab832b61">PeakFileOptions</a>
</li>
<li>clearPercentages()
: <a class="el" href="classOpenMS_1_1Gradient.html#a3458be24a622add411dc7eec35559c88">Gradient</a>
</li>
<li>clearRanges()
: <a class="el" href="classOpenMS_1_1RangeManager.html#aaa3d5efb96ade4c8ce2c8e216a73dcd1">RangeManager< D ></a>
</li>
<li>clearResidues_()
: <a class="el" href="classOpenMS_1_1ResidueDB.html#a3cbfe6933a6e0f5107c8f00466d70eeb">ResidueDB</a>
</li>
<li>clearResult()
: <a class="el" href="classOpenMS_1_1ProteinResolver.html#a2c5158e98b848aa78b228bd71168f7bf">ProteinResolver</a>
</li>
<li>clearTags()
: <a class="el" href="classOpenMS_1_1Param.html#a70b9681475a54b5c9d8c93d3f55e2722">Param</a>
</li>
<li>clearTimepoints()
: <a class="el" href="classOpenMS_1_1Gradient.html#a2e1cd1fe732e859eaaf8b75b7704a7a1">Gradient</a>
</li>
<li>clearTrainingEmissionProbabilities()
: <a class="el" href="classOpenMS_1_1HiddenMarkovModel.html#a37bc6dd8d73d8c1b8b8592cb9ae62c42">HiddenMarkovModel</a>
</li>
<li>clearUniqueId()
: <a class="el" href="classOpenMS_1_1UniqueIdInterface.html#abe2a26e5d4b92e59f5569bed03ee5b7b">UniqueIdInterface</a>
</li>
<li>CleavageModel()
: <a class="el" href="structOpenMS_1_1EnzymaticDigestion_1_1CleavageModel.html#a96c2c4b96e77b78b6c616aaf44f2fa64">EnzymaticDigestion::CleavageModel</a>
</li>
<li>clicked()
: <a class="el" href="classOpenMS_1_1TOPPASVertex.html#a263c24e31a1115d0b7b016189a710cb8">TOPPASVertex</a>
</li>
<li>clone()
: <a class="el" href="classOpenMS_1_1Digestion.html#ad547684b6281c785fb4e9aa33cf1f859">Digestion</a>
, <a class="el" href="classOpenMS_1_1Modification.html#ad547684b6281c785fb4e9aa33cf1f859">Modification</a>
, <a class="el" href="classOpenMS_1_1SampleTreatment.html#a51b58d600ee99017e8104ce3d65de180">SampleTreatment</a>
, <a class="el" href="classOpenMS_1_1Tagging.html#ad547684b6281c785fb4e9aa33cf1f859">Tagging</a>
</li>
<li>close()
: <a class="el" href="classOpenMS_1_1Bzip2Ifstream.html#a5ae591df94fc66ccb85cbb6565368bca">Bzip2Ifstream</a>
, <a class="el" href="classOpenMS_1_1GzipIfstream.html#a5ae591df94fc66ccb85cbb6565368bca">GzipIfstream</a>
</li>
<li>closeByTab()
: <a class="el" href="classOpenMS_1_1TOPPASBase.html#ad63103547742582c0a8c2f740c0ebe2a">TOPPASBase</a>
, <a class="el" href="classOpenMS_1_1TOPPViewBase.html#ad63103547742582c0a8c2f740c0ebe2a">TOPPViewBase</a>
</li>
<li>closeEvent()
: <a class="el" href="classOpenMS_1_1IDEvaluationBase.html#a5de2bd09256045c0b96e5a0be780fa85">IDEvaluationBase</a>
, <a class="el" href="classOpenMS_1_1INIFileEditorWindow.html#a5de2bd09256045c0b96e5a0be780fa85">INIFileEditorWindow</a>
, <a class="el" href="classOpenMS_1_1TOPPASBase.html#a5de2bd09256045c0b96e5a0be780fa85">TOPPASBase</a>
, <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a5de2bd09256045c0b96e5a0be780fa85">TOPPViewBase</a>
, <a class="el" href="classOpenMS_1_1SpectrumWidget.html#aa5274b1d2675c2d6e4883b8b77747e42">SpectrumWidget</a>
, <a class="el" href="classOpenMS_1_1TOPPASWidget.html#aa5274b1d2675c2d6e4883b8b77747e42">TOPPASWidget</a>
</li>
<li>closeFile()
: <a class="el" href="classOpenMS_1_1TOPPASBase.html#ab2ff17b940ae7aca4827d832ceeaeda4">TOPPASBase</a>
, <a class="el" href="classOpenMS_1_1TOPPViewBase.html#ab2ff17b940ae7aca4827d832ceeaeda4">TOPPViewBase</a>
</li>
<li>closeListEditor_()
: <a class="el" href="classOpenMS_1_1Internal_1_1ParamEditorDelegate.html#a62183d14d40c7dcf0d5d36fc999c6726">ParamEditorDelegate</a>
</li>
<li>cluster()
: <a class="el" href="classOpenMS_1_1ClusterHierarchical.html#ae2f71a927933400ed5ce71513352e9ae">ClusterHierarchical</a>
, <a class="el" href="classOpenMS_1_1HierarchicalClustering.html#a844bcda4813f21ce530f76e978bdb544">HierarchicalClustering< PointRef ></a>
, <a class="el" href="classOpenMS_1_1SILACClustering.html#a844bcda4813f21ce530f76e978bdb544">SILACClustering</a>
</li>
<li>Cluster()
: <a class="el" href="classOpenMS_1_1HierarchicalClustering_1_1Cluster.html#a7858dfcd9d94ff5575806ae483190155">HierarchicalClustering< PointRef >::Cluster</a>
</li>
<li>ClusterAnalyzer()
: <a class="el" href="classOpenMS_1_1ClusterAnalyzer.html#ace9f4a6b43173de5ec5264c3b17b8839">ClusterAnalyzer</a>
</li>
<li>clusterData()
: <a class="el" href="classOpenMS_1_1SILACAnalyzer.html#a1bb2cec563e265f21c96a116b6b3abf8">SILACAnalyzer</a>
</li>
<li>ClusteredMS2ConsensusSpectrum()
: <a class="el" href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html#aacc5f74e68cb6a33f5d2f44f2626e4b6">ClusteredMS2ConsensusSpectrum</a>
</li>
<li>ClusterFunctor()
: <a class="el" href="classOpenMS_1_1ClusterFunctor.html#af2422628fd52348a0f64d0f5a2df9975">ClusterFunctor</a>
</li>
<li>ClusterHierarchical()
: <a class="el" href="classOpenMS_1_1ClusterHierarchical.html#ad85aa8985d410cb639986b082cc30964">ClusterHierarchical</a>
</li>
<li>clusterIndex_()
: <a class="el" href="classOpenMS_1_1HierarchicalClustering.html#a09f38402e71feee118dd9c81a119017c">HierarchicalClustering< PointRef ></a>
</li>
<li>clusterSeeds_()
: <a class="el" href="classOpenMS_1_1IsotopeWaveletTransform.html#aa6e604058ed988f0f108f1d7d446cd56">IsotopeWaveletTransform< PeakType ></a>
</li>
<li>cmpOligos_()
: <a class="el" href="classOpenMS_1_1LibSVMEncoder.html#a070d7b3d971b30a61bcc2cbe5db9c9ed">LibSVMEncoder</a>
</li>
<li>cohesion()
: <a class="el" href="classOpenMS_1_1ClusterAnalyzer.html#a0d3b1464ce71cbf44e55e068e154c925">ClusterAnalyzer</a>
</li>
<li>col()
: <a class="el" href="classOpenMS_1_1Matrix.html#a659d9c674cacc2ffad5be2d79e52eb19">Matrix< Value ></a>
</li>
<li>colIndex()
: <a class="el" href="classOpenMS_1_1Matrix.html#a0c4e8b0c5e727bdcb3cb742a6c750009">Matrix< Value ></a>
</li>
<li>collectDecompositionsRecursively_()
: <a class="el" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#a4ddf0cd39df573dcf07184c8a22fcee0">IntegerMassDecomposer< ValueType, DecompositionValueType ></a>
</li>
<li>collectRatios_()
: <a class="el" href="classOpenMS_1_1IsobaricNormalizer.html#a20af01a77b3f2d2f980f4382abf102f8">IsobaricNormalizer</a>
</li>
<li>collectSetParameter()
: <a class="el" href="classOpenMS_1_1QcMLFile.html#acb827a2f5be93b9cc059d0dd65304bad">QcMLFile</a>
</li>
<li>colnames()
: <a class="el" href="structOpenSwath_1_1IDataFrameWriter.html#a212340e33e14c61b49874e78d3ad38e5">IDataFrameWriter</a>
, <a class="el" href="structOpenSwath_1_1DataMatrix.html#a563be405dd7f5732e12f3ce665b0d5f1">DataMatrix</a>
, <a class="el" href="structOpenSwath_1_1CSVWriter.html#a563be405dd7f5732e12f3ce665b0d5f1">CSVWriter</a>
</li>
<li>color()
: <a class="el" href="classOpenMS_1_1MultiGradient.html#a870ef18bfc068872282ab8ef387d736c">MultiGradient</a>
</li>
<li>ColorSelector()
: <a class="el" href="classOpenMS_1_1ColorSelector.html#a7a9a60214dc3014c33ff5514fa0ed6f1">ColorSelector</a>
</li>
<li>cols()
: <a class="el" href="classOpenMS_1_1Matrix.html#a8965490ee831637f475427b30e21a986">Matrix< Value ></a>
</li>
<li>commitAndCloseComboBox_()
: <a class="el" href="classOpenMS_1_1Internal_1_1ParamEditorDelegate.html#af3604dc32706a3026451f210cfec535b">ParamEditorDelegate</a>
</li>
<li>commitAndCloseLineEdit_()
: <a class="el" href="classOpenMS_1_1Internal_1_1ParamEditorDelegate.html#aab7a1b222f98c09e947871c80e658f9e">ParamEditorDelegate</a>
</li>
<li>commitAndCloseListEditor_()
: <a class="el" href="classOpenMS_1_1Internal_1_1ParamEditorDelegate.html#a0fa906e936639968cc462f5a97b9a0b2">ParamEditorDelegate</a>
</li>
<li>Compare()
: <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithmSpectrumAlignment_1_1Compare.html#a73903d9b2ec03887bcf011b913248c51">MapAlignmentAlgorithmSpectrumAlignment::Compare</a>
</li>
<li>compare_AC()
: <a class="el" href="classOpenMS_1_1MS2Info.html#a334aa175e45161f7d24738a5595a0db0">MS2Info</a>
</li>
<li>compare_feature_mass()
: <a class="el" href="classOpenMS_1_1LCMS.html#a3959b2d5311530376c26fbcb82afe0b3">LCMS</a>
</li>
<li>compareFeatureMassValuesAtPPMLevel()
: <a class="el" href="classOpenMS_1_1SHFeature.html#abd654ae8ad055f3055cb07278347425e">SHFeature</a>
</li>
<li>compareFiles()
: <a class="el" href="classOpenMS_1_1FuzzyStringComparator.html#a58e7d0c6975f74796306510bf95fdc9f">FuzzyStringComparator</a>
</li>
<li>CompareFouriertransform()
: <a class="el" href="classOpenMS_1_1CompareFouriertransform.html#ab8f305b1d3341899e02cd8e18d6fb4a4">CompareFouriertransform</a>
</li>
<li>compareIteratorToPeak()
: <a class="el" href="classOpenMS_1_1ProcessData.html#a49d10b61fe972ff5f731a4d6226ff715">ProcessData</a>
</li>
<li>compareLines_()
: <a class="el" href="classOpenMS_1_1FuzzyStringComparator.html#ab4ad7d183ca3d21f83778740b9829659">FuzzyStringComparator</a>
</li>
<li>compareMassValuesAtPPMLevel()
: <a class="el" href="classOpenMS_1_1SuperHirnUtil.html#a1086e1f1fed77baf948e91989aef9cb9">SuperHirnUtil</a>
</li>
<li>compareMZFeatureBeloning()
: <a class="el" href="classOpenMS_1_1MS1FeatureMerger.html#af046446ac9aefd989c1688cc8613645f">MS1FeatureMerger</a>
</li>
<li>comparepeaks_()
: <a class="el" href="classOpenMS_1_1SpectrumCheapDPCorr.html#ae65a624665676d61838d8cfd21a532a5">SpectrumCheapDPCorr</a>
</li>
<li>compareSpectra_()
: <a class="el" href="classOpenMS_1_1CompNovoIdentificationBase.html#a03573d18ed22e1e4531427cc2ae02f7e">CompNovoIdentificationBase</a>
</li>
<li>compareStreams()
: <a class="el" href="classOpenMS_1_1FuzzyStringComparator.html#ad26a29cfd630415bf5c601fc97d51f6a">FuzzyStringComparator</a>
</li>
<li>compareStrings()
: <a class="el" href="classOpenMS_1_1FuzzyStringComparator.html#a648efdab8f7665f3ddc8db60db07aa96">FuzzyStringComparator</a>
</li>
<li>compatible()
: <a class="el" href="classOpenMS_1_1MassDecomposition.html#a36196513c63ca6262c18453ae84c05f6">MassDecomposition</a>
</li>
<li>compatibleIDs_()
: <a class="el" href="classOpenMS_1_1QTClusterFinder.html#a7148926833e5c67ca5169a9a8b0f23d8">QTClusterFinder</a>
, <a class="el" href="classOpenMS_1_1StablePairFinder.html#a1f466abf56210878c97a3109add730e8">StablePairFinder</a>
</li>
<li>ComplementFilter()
: <a class="el" href="classOpenMS_1_1ComplementFilter.html#a345330dcef78eb44534b6d91a417a99f">ComplementFilter</a>
</li>
<li>ComplementMarker()
: <a class="el" href="classOpenMS_1_1ComplementMarker.html#a84dd5f702d1a6314e197a3c954a9d4be">ComplementMarker</a>
</li>
<li>CompleteLinkage()
: <a class="el" href="classOpenMS_1_1CompleteLinkage.html#a4f9359e787336dd150f55f4ea7ce3c50">CompleteLinkage</a>
</li>
<li>CompNovoIdentification()
: <a class="el" href="classOpenMS_1_1CompNovoIdentification.html#a8129bc56362a847658910193aeeabfc0">CompNovoIdentification</a>
</li>
<li>CompNovoIdentificationBase()
: <a class="el" href="classOpenMS_1_1CompNovoIdentificationBase.html#abf7f47daa3ae6a785ef3bfcfde6e102b">CompNovoIdentificationBase</a>
</li>
<li>CompNovoIdentificationCID()
: <a class="el" href="classOpenMS_1_1CompNovoIdentificationCID.html#a138c0a19ec5881821cde79884de2d382">CompNovoIdentificationCID</a>
</li>
<li>CompNovoIonScoring()
: <a class="el" href="classOpenMS_1_1CompNovoIonScoring.html#a84c38211248acb02e3f9bd7a6c199057">CompNovoIonScoring</a>
</li>
<li>CompNovoIonScoringBase()
: <a class="el" href="classOpenMS_1_1CompNovoIonScoringBase.html#a912b09e6891d017ed63c50a657759a2f">CompNovoIonScoringBase</a>
</li>
<li>CompNovoIonScoringCID()
: <a class="el" href="classOpenMS_1_1CompNovoIonScoringCID.html#aebd80a8120a67397ccdd91adb7f18eca">CompNovoIonScoringCID</a>
</li>
<li>Compomer()
: <a class="el" href="classOpenMS_1_1Compomer.html#aed7fc35a5be3454205f507d76caf3bd6">Compomer</a>
</li>
<li>compomerValid_()
: <a class="el" href="classOpenMS_1_1MassExplainer.html#aa7483278bf2e430f71307be6681b4f09">MassExplainer</a>
</li>
<li>Compound()
: <a class="el" href="classOpenMS_1_1TargetedExperimentHelper_1_1Compound.html#aca20a707cf7e21040512c429edc78a3d">Compound</a>
</li>
<li>compress()
: <a class="el" href="classOpenMS_1_1ConvexHull2D.html#acfa12d8fff98addb8e494c20e0774f8f">ConvexHull2D</a>
</li>
<li>CompressedInputSource()
: <a class="el" href="classOpenMS_1_1CompressedInputSource.html#aeff6daa8d90af4d2a154c11441120ff2">CompressedInputSource</a>
</li>
<li>compressSignals_()
: <a class="el" href="classOpenMS_1_1RawMSSignalSimulation.html#afada593e0917529b65351e6bbb0f2449">RawMSSignalSimulation</a>
</li>
<li>compressTrieDB()
: <a class="el" href="classOpenMS_1_1InspectOutfile.html#a89c621b8b8bacfddb074e0529ac18fbf">InspectOutfile</a>
</li>
<li>compute()
: <a class="el" href="classOpenMS_1_1FeatureDeconvolution.html#ae83a53d854a5301ffd1cc4a7f22b7a8a">FeatureDeconvolution</a>
, <a class="el" href="classOpenMS_1_1ILPDCWrapper.html#ad3dd2f151a2cfe40ac464193be48159e">ILPDCWrapper</a>
, <a class="el" href="classOpenMS_1_1AScore.html#abf98effb80693b1054ce2c8805428048">AScore</a>
, <a class="el" href="classOpenMS_1_1MassExplainer.html#a4993c97a669fa259c6574a18d547c117">MassExplainer</a>
</li>
<li>compute_CHRG()
: <a class="el" href="classOpenMS_1_1LCElutionPeak.html#a59eff6de209cb0d718389bc53cd9f788">LCElutionPeak</a>
</li>
<li>compute_delta_area()
: <a class="el" href="classOpenMS_1_1LCElutionPeak.html#a87ba885774fef1b82071649472e28551">LCElutionPeak</a>
</li>
<li>compute_F()
: <a class="el" href="classOpenMS_1_1SpectraSTSimilarityScore.html#a882fcc4ec17e4f88b669344dde015d73">SpectraSTSimilarityScore</a>
</li>
<li>compute_site_determining_ions()
: <a class="el" href="classOpenMS_1_1AScore.html#a42595c5d8ea8fdfc49185a67b26655c9">AScore</a>
</li>
<li>computeApexSNR()
: <a class="el" href="classOpenMS_1_1ElutionPeakDetection.html#ae3c86d78be4ee7a500d49874051d9a96">ElutionPeakDetection</a>
</li>
<li>computeAveragineSimScore_()
: <a class="el" href="classOpenMS_1_1FeatureFindingMetabo.html#a1a6adc26bc9e3432a84457c9356af173">FeatureFindingMetabo</a>
</li>
<li>computeBoundaries_()
: <a class="el" href="classOpenMS_1_1EGHModel.html#ae526b0f6efa6118c9ff15bebc3254969">EGHModel</a>
</li>
<li>computeClustering_()
: <a class="el" href="classOpenMS_1_1QTClusterFinder.html#a0777c664cc662e4a308752d343c391b0">QTClusterFinder</a>
</li>
<li>computeConsensus()
: <a class="el" href="classOpenMS_1_1ConsensusFeature.html#a103a87c6ee6222334ebe3ff82fb776d2">ConsensusFeature</a>
</li>
<li>computeConsensusStats_()
: <a class="el" href="classOpenMS_1_1LayerStatisticsDialog.html#a1b1026d5c968bedced541e7347794b3f">LayerStatisticsDialog</a>
</li>
<li>computeCorrelation()
: <a class="el" href="classOpenMS_1_1ConsensusMapNormalizerAlgorithmThreshold.html#ac85fe84db00eeae9ee6b39fd6b7aa784">ConsensusMapNormalizerAlgorithmThreshold</a>
</li>
<li>computeCosineSim_()
: <a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#a29a33d2d3fed1ee6659e0ba2534cf708">AccurateMassSearchEngine</a>
, <a class="el" href="classOpenMS_1_1FeatureFindingMetabo.html#a090a117206137e765f4dd4ca4affcd9f">FeatureFindingMetabo</a>
</li>
<li>computeCoverage()
: <a class="el" href="classOpenMS_1_1ProteinIdentification.html#a23ffbf566068fc9558bf0496a6338ac8">ProteinIdentification</a>
</li>
<li>computeCumulativeScore()
: <a class="el" href="classOpenMS_1_1AScore.html#ae714adee103a3df8512f034897ac3cfb">AScore</a>
</li>
<li>computeDechargeConsensus()
: <a class="el" href="classOpenMS_1_1ConsensusFeature.html#ab621653c273fa8713ac155f2f02fbb0f">ConsensusFeature</a>
</li>
<li>computeDeltaArea()
: <a class="el" href="classOpenMS_1_1MS1FeatureMerger.html#aa436e35af8ef8a6489d7e0307b744691">MS1FeatureMerger</a>
</li>
<li>computeEuclideanDist_()
: <a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#a80f97ee8c9e285a94c049f7e2dbefdb7">AccurateMassSearchEngine</a>
</li>
<li>computeFeatureStats_()
: <a class="el" href="classOpenMS_1_1LayerStatisticsDialog.html#a7e589d483efd1d8cfc6d0f02275350a7">LayerStatisticsDialog</a>
</li>
<li>computeFileHash_()
: <a class="el" href="classOpenMS_1_1FileHandler.html#a8c1cb2878ce0dfad77312c964962ff30">FileHandler</a>
</li>
<li>computeFit_()
: <a class="el" href="classOpenMS_1_1TransformationModelBSpline.html#a573d2ea348202d3a6be16129cd0a2f06">TransformationModelBSpline</a>
</li>
<li>computeFwhmArea()
: <a class="el" href="classOpenMS_1_1MassTrace.html#ac79e806ede1a23688ec57c7b1924d5ce">MassTrace</a>
</li>
<li>computeFwhmAreaRobust()
: <a class="el" href="classOpenMS_1_1MassTrace.html#ac7a9abede7863cc2a11cd44304af9f43">MassTrace</a>
</li>
<li>computeFwhmAreaSmooth()
: <a class="el" href="classOpenMS_1_1MassTrace.html#af4b4ec181bb2fe96bad2256cf2e86d3f">MassTrace</a>
</li>
<li>computeFwhmAreaSmoothRobust()
: <a class="el" href="classOpenMS_1_1MassTrace.html#adfad247375cce7e248eee5d8a77e890b">MassTrace</a>
</li>
<li>computeGoodness_()
: <a class="el" href="classOpenMS_1_1Math_1_1LinearRegression.html#a825c92fe4a74acc9b984ba05d236bd6d">LinearRegression</a>
</li>
<li>computeHighestPeptides()
: <a class="el" href="classOpenMS_1_1AScore.html#ade17b5251ccc8901231abc1495727f20">AScore</a>
</li>
<li>computeIntensityHist()
: <a class="el" href="classOpenMS_1_1BackgroundIntensityBin.html#a256069b5c200f15c8c1632794f84d83d">BackgroundIntensityBin</a>
</li>
<li>computeIntensityOfMSD_()
: <a class="el" href="classOpenMS_1_1ProteinResolver.html#af715fc84a8f108dfdcf83d6c9dc22ec9">ProteinResolver</a>
</li>
<li>computeIsotopeDistributionSize_()
: <a class="el" href="classOpenMS_1_1IsotopeWavelet.html#afef5251788fbc531058f991ff8940a9c">IsotopeWavelet</a>
</li>
<li>computeIsotopePatternSimilarity_()
: <a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#a135fe36d153f9931904038cad28c6ed6">AccurateMassSearchEngine</a>
</li>
<li>computeKernelMatrix()
: <a class="el" href="classOpenMS_1_1SVMWrapper.html#a08e46a6055d8d7e72a7655175a9280c6">SVMWrapper</a>
</li>
<li>computeLabelingStatistics_()
: <a class="el" href="classOpenMS_1_1IsobaricQuantifier.html#af03be5769898257606bf2ac78d478c35">IsobaricQuantifier</a>
</li>
<li>computeLCElutionPeakParameters()
: <a class="el" href="classOpenMS_1_1LCElutionPeak.html#a63aa08cf1850f1e19e1541344dbebff6">LCElutionPeak</a>
</li>
<li>computeLinear_()
: <a class="el" href="classOpenMS_1_1TransformationModelBSpline.html#aab40f8e37dbb6c8b84ca6b998f672327">TransformationModelBSpline</a>
</li>
<li>computeMassTraceNoise()
: <a class="el" href="classOpenMS_1_1ElutionPeakDetection.html#abb67b9996ca27e538e7847595440da7b">ElutionPeakDetection</a>
</li>
<li>computeMassTraceSNR()
: <a class="el" href="classOpenMS_1_1ElutionPeakDetection.html#aec8aff954a04a3309d03fe9d2249f56f">ElutionPeakDetection</a>
</li>
<li>computeMaxLikelihood()
: <a class="el" href="classOpenMS_1_1Math_1_1PosteriorErrorProbabilityModel.html#af23401b35e78d3c64ae4beba8600c7b1">PosteriorErrorProbabilityModel</a>
</li>
<li>computeMedians_()
: <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithmIdentification.html#ae72c20dd9461f3736db31476c9e308a3">MapAlignmentAlgorithmIdentification</a>
</li>
<li>computeMetaAverages_()
: <a class="el" href="classOpenMS_1_1LayerStatisticsDialog.html#a2375f2592fb8b77896f044f0dc5b1daa">LayerStatisticsDialog</a>
</li>
<li>computeMetaDataArrayStats_()
: <a class="el" href="classOpenMS_1_1LayerStatisticsDialog.html#a9c6b6631b89b6456964ebb81d195b68b">LayerStatisticsDialog</a>
</li>
<li>computeMinSpacing()
: <a class="el" href="classOpenMS_1_1IsotopeWaveletTransform.html#acdf960f3bc80fd3c9751bd698ca96be8">IsotopeWaveletTransform< PeakType ></a>
</li>
<li>computeMonoisotopicConsensus()
: <a class="el" href="classOpenMS_1_1ConsensusFeature.html#a383189c43f7105a24ec08b5e5cb9ecc5">ConsensusFeature</a>
</li>
<li>computeMS2SpectrumParameters()
: <a class="el" href="classOpenMS_1_1MS2ConsensusSpectrum.html#a552bc76090447a01d6f4ce31c48c6aea">MS2ConsensusSpectrum</a>
</li>
<li>computeNeutralMassFromAdduct_()
: <a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#acb0b1381f9198c722ccafda7dee37271">AccurateMassSearchEngine</a>
</li>
<li>computeNewMS1FeatureParameters()
: <a class="el" href="classOpenMS_1_1MS1FeatureMerger.html#a0f81e0665cecdd1e0e42a56e4d7bc406">MS1FeatureMerger</a>
</li>
<li>computeNormalizationFactors()
: <a class="el" href="classOpenMS_1_1ConsensusMapNormalizerAlgorithmMedian.html#aef3ea68d497714ffa502074365d4d883">ConsensusMapNormalizerAlgorithmMedian</a>
</li>
<li>computeNormalizationFactors_()
: <a class="el" href="classOpenMS_1_1IsobaricNormalizer.html#a44eba9c65b194d56da4fed1ec4d73e2e">IsobaricNormalizer</a>
</li>
<li>computeOLSCoeff_()
: <a class="el" href="classOpenMS_1_1FeatureFindingMetabo.html#a6955b077ab26e993cf0dd7ea3d553739">FeatureFindingMetabo</a>
</li>
<li>computePeakArea()
: <a class="el" href="classOpenMS_1_1MassTrace.html#ab84151a9dd69632b0de095875cfaeb07">MassTrace</a>
</li>
<li>computePeakPriority_()
: <a class="el" href="classOpenMS_1_1SimpleExtender.html#af7842efcd3ecab40cf021f5cae359dbe">SimpleExtender< PeakType, FeatureType ></a>
</li>
<li>computePeakStats_()
: <a class="el" href="classOpenMS_1_1LayerStatisticsDialog.html#acb50c4fafbd8de998e5fb7c5c2da8bdc">LayerStatisticsDialog</a>
</li>
<li>computePermutations_()
: <a class="el" href="classOpenMS_1_1AScore.html#a0ae4addd17ce4a1284e6f5f6226f9605">AScore</a>
</li>
<li>computePrecursorPurity_()
: <a class="el" href="classOpenMS_1_1IsobaricChannelExtractor.html#a13d1c6fdb0d176170dc1071c8d3842de">IsobaricChannelExtractor</a>
</li>
<li>computeProbability()
: <a class="el" href="classOpenMS_1_1Math_1_1PosteriorErrorProbabilityModel.html#adb74b2e5d7d81cf02d79aae89109c9eb">PosteriorErrorProbabilityModel</a>
</li>
<li>computeQuality_()
: <a class="el" href="classOpenMS_1_1QTCluster.html#aee62a89086b92d39315b7be297c90e74">QTCluster</a>
</li>
<li>computeRegression()
: <a class="el" href="classOpenMS_1_1Math_1_1LinearRegression.html#a115e2ca09974d554cc194957cf254213">LinearRegression</a>
</li>
<li>computeRegressionNoIntercept()
: <a class="el" href="classOpenMS_1_1Math_1_1LinearRegression.html#aa2ee8e6e79a594c3dfd5aefaf2846e72">LinearRegression</a>
</li>
<li>computeRegressionWeighted()
: <a class="el" href="classOpenMS_1_1Math_1_1LinearRegression.html#a5cea2666293a4c3987a9c64d96170758">LinearRegression</a>
</li>
<li>computeSelection()
: <a class="el" href="classOpenMS_1_1Spectrum3DOpenGLCanvas.html#a1509c8a185374cd9f401c9b85751158e">Spectrum3DOpenGLCanvas</a>
</li>
<li>computeSlice_()
: <a class="el" href="classOpenMS_1_1ILPDCWrapper.html#ad4d86f2a51dcee132d8a06fa959dab58">ILPDCWrapper</a>
</li>
<li>computeSliceOld_()
: <a class="el" href="classOpenMS_1_1ILPDCWrapper.html#a506ef44046a4a357be463aa5459b8902">ILPDCWrapper</a>
</li>
<li>computeSmoothedPeakArea()
: <a class="el" href="classOpenMS_1_1MassTrace.html#a2752dfa1f6dd755a4cd0322babfbc85d">MassTrace</a>
</li>
<li>computeStats_()
: <a class="el" href="classOpenMS_1_1IsobaricIsotopeCorrector.html#a59afbaed5c4f08da71ed1d56c0fc6004">IsobaricIsotopeCorrector</a>
</li>
<li>computeSTN_()
: <a class="el" href="classOpenMS_1_1SignalToNoiseEstimator.html#aa413cfb2729dbbe2d7401541eb708e07">SignalToNoiseEstimator< Container ></a>
, <a class="el" href="classOpenMS_1_1SignalToNoiseEstimatorMeanIterative.html#aa216343e93fdf8b481569ae05d437dc4">SignalToNoiseEstimatorMeanIterative< Container ></a>
, <a class="el" href="classOpenMS_1_1SignalToNoiseEstimatorMedian.html#a6a6102b4711d0d316cab9a78f492bc64">SignalToNoiseEstimatorMedian< Container ></a>
</li>
<li>computeTheoretical()
: <a class="el" href="classOpenMS_1_1GaussTraceFitter.html#ad4ae88cf98ab9fa0da9bb0da7274bf66">GaussTraceFitter< PeakType ></a>
, <a class="el" href="classOpenMS_1_1EGHTraceFitter.html#ad4ae88cf98ab9fa0da9bb0da7274bf66">EGHTraceFitter< PeakType ></a>
, <a class="el" href="classOpenMS_1_1TraceFitter.html#a65120f4f127d69944775cd5aae06709f">TraceFitter< PeakType ></a>
</li>
<li>computeTransformations_()
: <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithmIdentification.html#a08badb7dd1cf370503022ddd44346ac2">MapAlignmentAlgorithmIdentification</a>
</li>
<li>computeTupel_()
: <a class="el" href="classOpenMS_1_1AScore.html#a4d9308d60dc365586ef640fbbf8ef67b">AScore</a>
</li>
<li>concatenate()
: <a class="el" href="classOpenMS_1_1String.html#af2e290f0b259903b0894fb92909a24b0">String</a>
, <a class="el" href="classOpenMS_1_1StringList.html#ade9f7e40ab3a712af3d8650bd7011d98">StringList</a>
</li>
<li>condensIsotopePattern()
: <a class="el" href="classOpenMS_1_1ConsensusIsotopePattern.html#ab6032bffd10ce18c7f8619fb863ec002">ConsensusIsotopePattern</a>
</li>
<li>ConfidenceScoring()
: <a class="el" href="classOpenMS_1_1ConfidenceScoring.html#ada171267bc93641a67a963525c7cb4fe">ConfidenceScoring</a>
</li>
<li>configure()
: <a class="el" href="classOpenMS_1_1LogConfigHandler.html#add738f152871761500eaf73a4790b0d6">LogConfigHandler</a>
</li>
<li>connect()
: <a class="el" href="classOpenMS_1_1DBConnection.html#abe1a1080b839d05bd364f8519b53810a">DBConnection</a>
</li>
<li>connectEdgeSignals()
: <a class="el" href="classOpenMS_1_1TOPPASScene.html#ae59e6c5abf117da5be78dedca51b1c1b">TOPPASScene</a>
</li>
<li>connectMergerVertexSignals()
: <a class="el" href="classOpenMS_1_1TOPPASScene.html#a6e929b79c44bcd6e62fb64b3c80a0407">TOPPASScene</a>
</li>
<li>connectOutputVertexSignals()
: <a class="el" href="classOpenMS_1_1TOPPASScene.html#ac37e810aea5be895f3ccbdada67372c8">TOPPASScene</a>
</li>
<li>connectToDB_()
: <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a06f09695cf83b5a79005b087d1603017">TOPPViewBase</a>
</li>
<li>connectToolVertexSignals()
: <a class="el" href="classOpenMS_1_1TOPPASScene.html#a6ec041e272db6aa3e2674e734b434c6c">TOPPASScene</a>
</li>
<li>connectVertexSignals()
: <a class="el" href="classOpenMS_1_1TOPPASScene.html#ad96be03296020c51e5196f74133628d1">TOPPASScene</a>
</li>
<li>connectVisualizer_()
: <a class="el" href="classOpenMS_1_1MetaDataBrowser.html#afcce52e2c2a8fdf0584c39e45a2a15f1">MetaDataBrowser</a>
</li>
<li>ConsensusFeature()
: <a class="el" href="classOpenMS_1_1ConsensusFeature.html#a685072f6281fcde65d7339e17bda144b">ConsensusFeature</a>
</li>
<li>ConsensusID()
: <a class="el" href="classOpenMS_1_1ConsensusID.html#a2acada526be7b20cded75fbfa9145652">ConsensusID</a>
</li>
<li>ConsensusIsotopePattern()
: <a class="el" href="classOpenMS_1_1ConsensusIsotopePattern.html#a24dc2c26dc360154f0b4d2713b7837ee">ConsensusIsotopePattern</a>
</li>
<li>ConsensusMap()
: <a class="el" href="classOpenMS_1_1ConsensusMap.html#ae193ac242652dfd04e7b745aa7e204b2">ConsensusMap</a>
</li>
<li>ConsensusMapNormalizerAlgorithmMedian()
: <a class="el" href="classOpenMS_1_1ConsensusMapNormalizerAlgorithmMedian.html#ae510c9dca5740e4a88a31c16dc9281ac">ConsensusMapNormalizerAlgorithmMedian</a>
</li>
<li>ConsensusMapNormalizerAlgorithmQuantile()
: <a class="el" href="classOpenMS_1_1ConsensusMapNormalizerAlgorithmQuantile.html#a21605f58466a430a14f62797f7a85107">ConsensusMapNormalizerAlgorithmQuantile</a>
</li>
<li>ConsensusMapNormalizerAlgorithmThreshold()
: <a class="el" href="classOpenMS_1_1ConsensusMapNormalizerAlgorithmThreshold.html#a83a9000fdcc900cb619384be24125106">ConsensusMapNormalizerAlgorithmThreshold</a>
</li>
<li>ConsensusXMLFile()
: <a class="el" href="classOpenMS_1_1ConsensusXMLFile.html#ae63d0a5f575fde9fabc86d11e02c1b70">ConsensusXMLFile</a>
</li>
<li>ConsoleUtils()
: <a class="el" href="classOpenMS_1_1ConsoleUtils.html#adacc6a5b28f41153377763cfbea24e1e">ConsoleUtils</a>
</li>
<li>ConstIterator()
: <a class="el" href="classOpenMS_1_1HashGrid_1_1ConstIterator.html#a0465baf9d6e5b33556d8f22ccb3a1aee">HashGrid< Cluster >::ConstIterator</a>
, <a class="el" href="classOpenMS_1_1AASequence_1_1ConstIterator.html#aef44228e669dcefd36cced5bb991720c">AASequence::ConstIterator</a>
, <a class="el" href="classOpenMS_1_1HashGrid_1_1ConstIterator.html#ab7729bebe96e4c00ce85fe94f78216c6">HashGrid< Cluster >::ConstIterator</a>
</li>
<li>ConstRefVector()
: <a class="el" href="classOpenMS_1_1ConstRefVector.html#a17c497d76eb8dc2e93dd684f4200a029">ConstRefVector< ContainerT ></a>
</li>
<li>ConstRefVectorConstIterator()
: <a class="el" href="classOpenMS_1_1ConstRefVector_1_1ConstRefVectorConstIterator.html#aba0790524eda819b3e99127d4fc42cf2">ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT ></a>
</li>
<li>ConstRefVectorIterator()
: <a class="el" href="classOpenMS_1_1ConstRefVector_1_1ConstRefVectorIterator.html#a1e16d021adc5091ea4297dbb832c8d72">ConstRefVector< ContainerT >::ConstRefVectorIterator< ValueT ></a>
</li>
<li>constructClusteredConsenusSpectraFragments()
: <a class="el" href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html#a48200be01b31cdee3c4742db2fd30831">ClusteredMS2ConsensusSpectrum</a>
</li>
<li>constructConsusPattern()
: <a class="el" href="classOpenMS_1_1ConsensusIsotopePattern.html#a674687834422f78cd01315cf3106d38a">ConsensusIsotopePattern</a>
</li>
<li>constructMS1FeatureFromMS2Feature()
: <a class="el" href="classOpenMS_1_1FTPeakDetectController.html#a93bec1d816ded2511e0105d1a2aa202e">FTPeakDetectController</a>
</li>
<li>Contact()
: <a class="el" href="structOpenMS_1_1TargetedExperimentHelper_1_1Contact.html#a9e5d42b3d30874c9ffc3bb94608492da">Contact</a>
</li>
<li>ContactPerson()
: <a class="el" href="classOpenMS_1_1ContactPerson.html#a116485438a164a82b6127f4702cc3097">ContactPerson</a>
</li>
<li>ContactPersonVisualizer()
: <a class="el" href="classOpenMS_1_1ContactPersonVisualizer.html#acfba2633894854ad39b88ec01a993ff9">ContactPersonVisualizer</a>
</li>
<li>contains()
: <a class="el" href="classOpenMS_1_1StringList.html#af4a386323a5a2bdffcbf06bf5a70a0ae">StringList</a>
, <a class="el" href="classOpenMS_1_1DoubleList.html#ae64541ec61331d0717c33e0d3117a6a3">DoubleList</a>
, <a class="el" href="classOpenMS_1_1IntList.html#ac2d1b0c3af7939b2b7d5e74607166d9c">IntList</a>
</li>
<li>containsMS1Scans()
: <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a1a0e3814f639bbceb2a4f454bd7fe1ff">TOPPViewBase</a>
</li>
<li>containsMSLevel()
: <a class="el" href="classOpenMS_1_1PeakFileOptions.html#a30daaf738cadaf1ccdd59557a681329a">PeakFileOptions</a>
</li>
<li>containsTag()
: <a class="el" href="classOpenMS_1_1MassDecomposition.html#a9af7e3bd4e9ffb5140634e19be5682ba">MassDecomposition</a>
</li>
<li>contextMenuEvent()
: <a class="el" href="classOpenMS_1_1TOPPASTabBar.html#a4568e3a90fd69be0b72994d68fa6173b">TOPPASTabBar</a>
, <a class="el" href="classOpenMS_1_1TOPPASLogWindow.html#a4568e3a90fd69be0b72994d68fa6173b">TOPPASLogWindow</a>
, <a class="el" href="classOpenMS_1_1Spectrum1DCanvas.html#a4568e3a90fd69be0b72994d68fa6173b">Spectrum1DCanvas</a>
, <a class="el" href="classOpenMS_1_1EnhancedTabBar.html#a4568e3a90fd69be0b72994d68fa6173b">EnhancedTabBar</a>
, <a class="el" href="classOpenMS_1_1Spectrum2DCanvas.html#a4568e3a90fd69be0b72994d68fa6173b">Spectrum2DCanvas</a>
, <a class="el" href="classOpenMS_1_1MultiGradientSelector.html#a4568e3a90fd69be0b72994d68fa6173b">MultiGradientSelector</a>
, <a class="el" href="classOpenMS_1_1TOPPASEdge.html#aa4cd83391ec59f8c0d4c4410474b1e08">TOPPASEdge</a>
, <a class="el" href="classOpenMS_1_1TOPPASScene.html#aa4cd83391ec59f8c0d4c4410474b1e08">TOPPASScene</a>
, <a class="el" href="classOpenMS_1_1TOPPASVertex.html#aa4cd83391ec59f8c0d4c4410474b1e08">TOPPASVertex</a>
, <a class="el" href="classOpenMS_1_1Spectrum3DCanvas.html#a4568e3a90fd69be0b72994d68fa6173b">Spectrum3DCanvas</a>
</li>
<li>ContinuousWaveletTransform()
: <a class="el" href="classOpenMS_1_1ContinuousWaveletTransform.html#af03739d852bd44aa7a36aefe3b8479f0">ContinuousWaveletTransform</a>
</li>
<li>ContinuousWaveletTransformNumIntegration()
: <a class="el" href="classOpenMS_1_1ContinuousWaveletTransformNumIntegration.html#aa2b381cabf0375fe848db1667b0cc4fc">ContinuousWaveletTransformNumIntegration</a>
</li>
<li>ControlledVocabulary()
: <a class="el" href="classOpenMS_1_1ControlledVocabulary.html#a0467af3c8247879181fe2e2930eeaabc">ControlledVocabulary</a>
</li>
<li>ConversionError()
: <a class="el" href="classOpenMS_1_1Exception_1_1ConversionError.html#ac8247bf93cbe18f6322614687a6e4c91">ConversionError</a>
</li>
<li>convert()
: <a class="el" href="classOpenMS_1_1Internal_1_1StringManager.html#abab43533c70de6f840de04eaf3f5d834">StringManager</a>
, <a class="el" href="classOpenMS_1_1ConsensusMap.html#addd3e7ab2d02c8ff9377da76cf2fcaff">ConsensusMap</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1StringManager.html#ae3a31f4b268828369711ecf81ec575a0">StringManager</a>
, <a class="el" href="structOpenSwath_1_1TransitionHelper.html#a48adb216b217aaacdba3030817867385">TransitionHelper</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1StringManager.html#a022b559e3e3948f9d2a0c462b1983d79">StringManager</a>
, <a class="el" href="classOpenMS_1_1ConsensusMap.html#af6f8ba65d3c875e1e6c58618301de25a">ConsensusMap</a>
</li>
<li>convert_ms_peaks()
: <a class="el" href="classOpenMS_1_1ProcessData.html#ad2cd0abe7da3ef9c07fc1f5c46b6b638">ProcessData</a>
</li>
<li>convert_to_LC_elution_peak()
: <a class="el" href="classOpenMS_1_1ProcessData.html#a89432ab851d5e31064f71e31ca9e0ca5">ProcessData</a>
</li>
<li>convertChromatogramsToSpectra()
: <a class="el" href="classOpenMS_1_1ChromatogramTools.html#a180cb4974eaf3d4dea0de5326b132951">ChromatogramTools</a>
</li>
<li>convertModificationSet_()
: <a class="el" href="classOpenMS_1_1XTandemInfile.html#a390dc4df784f74b5e01f6f9ff2157201">XTandemInfile</a>
</li>
<li>convertPeptideIdScores_()
: <a class="el" href="classOpenMS_1_1PrecursorIonSelection.html#a2499e2cd822d59dc3f8edbc339b043b3">PrecursorIonSelection</a>
</li>
<li>convertPeptideToAASequence()
: <a class="el" href="classOpenMS_1_1OpenSwathDataAccessHelper.html#a8ae154a5964d69f913d864b169b7310e">OpenSwathDataAccessHelper</a>
</li>
<li>convertSeedList()
: <a class="el" href="classOpenMS_1_1SeedListGenerator.html#ada845054d1959183aa987e7b3e5cd498">SeedListGenerator</a>
</li>
<li>convertSpectraToChromatograms()
: <a class="el" href="classOpenMS_1_1ChromatogramTools.html#af3ff28dcfb8f80c33a57605672ebb0b1">ChromatogramTools</a>
</li>
<li>convertTargetedExp()
: <a class="el" href="classOpenMS_1_1OpenSwathDataAccessHelper.html#a0476f3ea925f584d9064efee48c7db6a">OpenSwathDataAccessHelper</a>
</li>
<li>convertTargetedExperimentToTSV()
: <a class="el" href="classOpenMS_1_1TransitionTSVReader.html#a61fec279b0e1353549a798fd81584851">TransitionTSVReader</a>
</li>
<li>convertToOpenMSChromatogram()
: <a class="el" href="classOpenMS_1_1OpenSwathDataAccessHelper.html#a64343e3d648cde97d9d7970c08eea3f7">OpenSwathDataAccessHelper</a>
</li>
<li>convertToOpenMSSpectrum()
: <a class="el" href="classOpenMS_1_1OpenSwathDataAccessHelper.html#abdfea944b47657cb07679cb723bb7d1e">OpenSwathDataAccessHelper</a>
</li>
<li>convertToSpectrumPtr()
: <a class="el" href="classOpenMS_1_1OpenSwathDataAccessHelper.html#a13d17d1899b239966950b8124acb38ae">OpenSwathDataAccessHelper</a>
</li>
<li>convertTSVToTargetedExperiment()
: <a class="el" href="classOpenMS_1_1TransitionTSVReader.html#a586860c61e9394bbd63a95d067ae60bf">TransitionTSVReader</a>
</li>
<li>ConvexHull2D()
: <a class="el" href="classOpenMS_1_1ConvexHull2D.html#a189f537339e16dfae0d8dfa124dce9d4">ConvexHull2D</a>
</li>
<li>convolve_()
: <a class="el" href="classOpenMS_1_1IsotopeDistribution.html#adc5a3161b06530f05aeaee8c9c28a01b">IsotopeDistribution</a>
</li>
<li>convolvePow_()
: <a class="el" href="classOpenMS_1_1IsotopeDistribution.html#aa7bde5e19c3dda3f2d6644619018024c">IsotopeDistribution</a>
</li>
<li>convolveSquare_()
: <a class="el" href="classOpenMS_1_1IsotopeDistribution.html#a0f2aa10972511b3227e4eb53143adc2a">IsotopeDistribution</a>
</li>
<li>coordDist_()
: <a class="el" href="classOpenMS_1_1HierarchicalClustering.html#a27997f09e0294656dc4f04b44f1ed997">HierarchicalClustering< PointRef ></a>
</li>
<li>coordElemDiv_()
: <a class="el" href="classOpenMS_1_1HierarchicalClustering.html#a9c7f29814fd06f4c2c33d6a7be2d0a90">HierarchicalClustering< PointRef ></a>
</li>
<li>coordElemGreater_()
: <a class="el" href="classOpenMS_1_1HierarchicalClustering.html#ae32463c74e40f312b824de35fc40ef8b">HierarchicalClustering< PointRef ></a>
</li>
<li>coordScalarDiv_()
: <a class="el" href="classOpenMS_1_1HierarchicalClustering.html#a4bef3ebae734f9d941a560cd6f0655eb">HierarchicalClustering< PointRef ></a>
</li>
<li>copy()
: <a class="el" href="classOpenMS_1_1Param.html#a25319a96118d2373efc5af9c8679b98b">Param</a>
</li>
<li>copy_()
: <a class="el" href="classOpenMS_1_1HiddenMarkovModel.html#a97aeece87625ed35e06397bb267ccce2">HiddenMarkovModel</a>
, <a class="el" href="classOpenMS_1_1TOPPASOutputFileListVertex.html#a963cfbb3ba938897a17f191b88d9ad41">TOPPASOutputFileListVertex</a>
</li>
<li>copyLayer()
: <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a653cd298ceb9fc75783f7ecdf476fe39">TOPPViewBase</a>
</li>
<li>copySelected()
: <a class="el" href="classOpenMS_1_1TOPPASScene.html#a611434e9662f8b60b5d5ccf5bcd08548">TOPPASScene</a>
</li>
<li>correctIsotopicImpurities()
: <a class="el" href="classOpenMS_1_1IsobaricIsotopeCorrector.html#a1cab52960c499e35d391649cf270abb7">IsobaricIsotopeCorrector</a>
</li>
<li>correctMasses()
: <a class="el" href="classOpenMS_1_1MRMDecoy.html#ad52f111c105d7d46b6af3b4c9f7d48a6">MRMDecoy</a>
</li>
<li>correlate_()
: <a class="el" href="classOpenMS_1_1PeakPickerCWT.html#a93a102fe34a65fcd27d40ee0099b65f4">PeakPickerCWT</a>
</li>
<li>correlationFilter1_()
: <a class="el" href="classOpenMS_1_1SILACFilter.html#a527d8ebafe4ccaf0e450e97c3feceaaa">SILACFilter</a>
</li>
<li>correlationFilter2_()
: <a class="el" href="classOpenMS_1_1SILACFilter.html#a672251dcd2422c3741f2ffb743e3ee20">SILACFilter</a>
</li>
<li>count()
: <a class="el" href="classOpenSwath_1_1mean__and__stddev.html#ad9eb3c6cef0ec1d7873fc9658d9cf344">mean_and_stddev</a>
</li>
<li>countFreeIDs()
: <a class="el" href="classOpenMS_1_1DocumentIDTagger.html#aa5645b19947f67e4a944d4299d2196f6">DocumentIDTagger</a>
</li>
<li>countIntensities_()
: <a class="el" href="classOpenMS_1_1SvmTheoreticalSpectrumGeneratorTrainer.html#ae04a1b0f94c76c06ccdd617bd9b57d5a">SvmTheoreticalSpectrumGeneratorTrainer</a>
</li>
<li>countIonizedResidues_()
: <a class="el" href="classOpenMS_1_1IonizationSimulation.html#aea6479d26c6eeb209d00337314b854f0">IonizationSimulation</a>
</li>
<li>countMissedCleavagesTryptic_()
: <a class="el" href="classOpenMS_1_1CompNovoIdentificationBase.html#aaa25c86b47d7c7126c67861df50b5d7a">CompNovoIdentificationBase</a>
</li>
<li>countMS1Zeros()
: <a class="el" href="classOpenMS_1_1TOPPViewBase.html#ae122d126bb53355225514589c29b21d7">TOPPViewBase</a>
</li>
<li>countPeptides_()
: <a class="el" href="classOpenMS_1_1PeptideAndProteinQuant.html#a2fca327094707629d72e9f9a56016267">PeptideAndProteinQuant</a>
</li>
<li>countTargetDecoy()
: <a class="el" href="classOpenMS_1_1ProteinResolver.html#ab67adca0248e37127c96309fc6d6fb12">ProteinResolver</a>
</li>
<li>countTreatments()
: <a class="el" href="classOpenMS_1_1Sample.html#afdfb111087a9c3c54d923ae8297f5ab8">Sample</a>
</li>
<li>create()
: <a class="el" href="classOpenMS_1_1IsotopeModel.html#ac6fd3f4c80bb90b69697208024a0c2ab">IsotopeModel</a>
, <a class="el" href="classOpenMS_1_1O18Labeler.html#a4de43939ecee328ea4cd203a39fb3dc0">O18Labeler</a>
, <a class="el" href="classOpenMS_1_1SpectrumPrecursorComparator.html#aea33b1d3b12fac714a9b5a9489d9ce10">SpectrumPrecursorComparator</a>
, <a class="el" href="classOpenMS_1_1FeatureGroupingAlgorithmUnlabeled.html#ad2ac805e16aa3138b474571b71ed96fe">FeatureGroupingAlgorithmUnlabeled</a>
, <a class="el" href="classOpenMS_1_1PoseClusteringAffineSuperimposer.html#a0c5a095daf28e276b3a6247305da8006">PoseClusteringAffineSuperimposer</a>
, <a class="el" href="classOpenMS_1_1GoodDiffFilter.html#a688dd7fe92ebbbb74ca8a20934bfaed9">GoodDiffFilter</a>
, <a class="el" href="classOpenMS_1_1ComplementMarker.html#a565d0a551885f942a1c7f6644494b93a">ComplementMarker</a>
, <a class="el" href="classOpenMS_1_1BiGaussFitter1D.html#a0d49315bbd004f444888b8ab02c28266">BiGaussFitter1D</a>
, <a class="el" href="classOpenMS_1_1StablePairFinder.html#aedd9bc32d9e13af233c2cbc3f06a0b68">StablePairFinder</a>
, <a class="el" href="classOpenMS_1_1CompareFouriertransform.html#aea33b1d3b12fac714a9b5a9489d9ce10">CompareFouriertransform</a>
, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmIsotopeWavelet.html#a81483ea6deb5aa7b6e11d0c3c871f532">FeatureFinderAlgorithmIsotopeWavelet< PeakType, FeatureType ></a>
, <a class="el" href="classOpenMS_1_1IsotopeMarker.html#a565d0a551885f942a1c7f6644494b93a">IsotopeMarker</a>
, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmMRM.html#a81483ea6deb5aa7b6e11d0c3c871f532">FeatureFinderAlgorithmMRM< PeakType, FeatureType ></a>
, <a class="el" href="classOpenMS_1_1TrypticIterator.html#a8655641304d0f901ffb687edca0b59f8">TrypticIterator</a>
, <a class="el" href="classOpenMS_1_1NeutralLossMarker.html#a565d0a551885f942a1c7f6644494b93a">NeutralLossMarker</a>
, <a class="el" href="classOpenMS_1_1IntensityBalanceFilter.html#a688dd7fe92ebbbb74ca8a20934bfaed9">IntensityBalanceFilter</a>
, <a class="el" href="classOpenMS_1_1ITRAQLabeler.html#a4de43939ecee328ea4cd203a39fb3dc0">ITRAQLabeler</a>
, <a class="el" href="classOpenMS_1_1DoubleList.html#a55a96848c17ac762c052ca6a2610e455">DoubleList</a>
, <a class="el" href="classOpenMS_1_1NeutralLossDiffFilter.html#a688dd7fe92ebbbb74ca8a20934bfaed9">NeutralLossDiffFilter</a>
, <a class="el" href="classOpenMS_1_1CompleteLinkage.html#accf0cc572a2a0730ff6c50c776232cbf">CompleteLinkage</a>
, <a class="el" href="classOpenMS_1_1SpectraSTSimilarityScore.html#aea33b1d3b12fac714a9b5a9489d9ce10">SpectraSTSimilarityScore</a>
, <a class="el" href="classOpenMS_1_1EmgFitter1D.html#a0d49315bbd004f444888b8ab02c28266">EmgFitter1D</a>
, <a class="el" href="classOpenMS_1_1SingleLinkage.html#accf0cc572a2a0730ff6c50c776232cbf">SingleLinkage</a>
, <a class="el" href="classOpenMS_1_1SpectrumAlignmentScore.html#aea33b1d3b12fac714a9b5a9489d9ce10">SpectrumAlignmentScore</a>
, <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithmPoseClustering.html#a9584ec9238430832ac2c381039513247">MapAlignmentAlgorithmPoseClustering</a>
, <a class="el" href="classOpenMS_1_1ComplementFilter.html#a688dd7fe92ebbbb74ca8a20934bfaed9">ComplementFilter</a>
, <a class="el" href="classOpenMS_1_1AverageLinkage.html#accf0cc572a2a0730ff6c50c776232cbf">AverageLinkage</a>
, <a class="el" href="classOpenMS_1_1EdwardsLippertIteratorTryptic.html#a8655641304d0f901ffb687edca0b59f8">EdwardsLippertIteratorTryptic</a>
, <a class="el" href="classOpenMS_1_1EGHFitter1D.html#a0d49315bbd004f444888b8ab02c28266">EGHFitter1D</a>
, <a class="el" href="classOpenMS_1_1QTClusterFinder.html#aedd9bc32d9e13af233c2cbc3f06a0b68">QTClusterFinder</a>
, <a class="el" href="classOpenMS_1_1BiGaussModel.html#ac6fd3f4c80bb90b69697208024a0c2ab">BiGaussModel</a>
, <a class="el" href="classOpenMS_1_1EmgModel.html#ac6fd3f4c80bb90b69697208024a0c2ab">EmgModel</a>
, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSH.html#aba691daad70f85242bed281fbcd0eca5">FeatureFinderAlgorithmSH< PeakType, FeatureType ></a>
, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a81483ea6deb5aa7b6e11d0c3c871f532">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a>
, <a class="el" href="classOpenMS_1_1MapAlignmentEvaluationAlgorithmPrecision.html#aad72baefabd847a7376010ca08a462fe">MapAlignmentEvaluationAlgorithmPrecision</a>
, <a class="el" href="classOpenMS_1_1MapAlignmentEvaluationAlgorithmRecall.html#aad72baefabd847a7376010ca08a462fe">MapAlignmentEvaluationAlgorithmRecall</a>
, <a class="el" href="classOpenMS_1_1GaussFitter1D.html#a0d49315bbd004f444888b8ab02c28266">GaussFitter1D</a>
, <a class="el" href="classOpenMS_1_1LabeledPairFinder.html#aedd9bc32d9e13af233c2cbc3f06a0b68">LabeledPairFinder</a>
, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimplest.html#a81483ea6deb5aa7b6e11d0c3c871f532">FeatureFinderAlgorithmSimplest< PeakType, FeatureType ></a>
, <a class="el" href="classOpenMS_1_1ExtendedIsotopeFitter1D.html#a0d49315bbd004f444888b8ab02c28266">ExtendedIsotopeFitter1D</a>
, <a class="el" href="classOpenMS_1_1FeatureGroupingAlgorithmIdentification.html#ad2ac805e16aa3138b474571b71ed96fe">FeatureGroupingAlgorithmIdentification</a>
, <a class="el" href="classOpenMS_1_1FeatureGroupingAlgorithmLabeled.html#ad2ac805e16aa3138b474571b71ed96fe">FeatureGroupingAlgorithmLabeled</a>
, <a class="el" href="classOpenMS_1_1SpectrumCheapDPCorr.html#aea33b1d3b12fac714a9b5a9489d9ce10">SpectrumCheapDPCorr</a>
, <a class="el" href="classOpenMS_1_1IsotopeFitter1D.html#a0d49315bbd004f444888b8ab02c28266">IsotopeFitter1D</a>
, <a class="el" href="classOpenMS_1_1DoubleList.html#ab29f4ea6382f482b44cdff404ca4bbe0">DoubleList</a>
, <a class="el" href="classOpenMS_1_1LmaGaussFitter1D.html#a0d49315bbd004f444888b8ab02c28266">LmaGaussFitter1D</a>
, <a class="el" href="classOpenMS_1_1FastaIteratorIntern.html#a8655641304d0f901ffb687edca0b59f8">FastaIteratorIntern</a>
, <a class="el" href="classOpenMS_1_1GaussModel.html#ac6fd3f4c80bb90b69697208024a0c2ab">GaussModel</a>
, <a class="el" href="classOpenMS_1_1LmaIsotopeFitter1D.html#a0d49315bbd004f444888b8ab02c28266">LmaIsotopeFitter1D</a>
, <a class="el" href="structOpenMS_1_1VersionInfo_1_1VersionDetails.html#a43f7f28c650b47c685b8b059a716f35c">VersionInfo::VersionDetails</a>
, <a class="el" href="classOpenMS_1_1LmaIsotopeModel.html#ac6fd3f4c80bb90b69697208024a0c2ab">LmaIsotopeModel</a>
, <a class="el" href="classOpenMS_1_1Factory.html#a4cfac1ac1b4ac63d3b169291ac8019ed">Factory< FactoryProduct ></a>
, <a class="el" href="classOpenMS_1_1BinnedSumAgreeingIntensities.html#a7bbdd271873eb4b7a6ca60fb7b26aebc">BinnedSumAgreeingIntensities</a>
, <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithmIdentification.html#a9584ec9238430832ac2c381039513247">MapAlignmentAlgorithmIdentification</a>
, <a class="el" href="classOpenMS_1_1SimplePairFinder.html#aedd9bc32d9e13af233c2cbc3f06a0b68">SimplePairFinder</a>
, <a class="el" href="classOpenMS_1_1LabelFreeLabeler.html#a4de43939ecee328ea4cd203a39fb3dc0">LabelFreeLabeler</a>
, <a class="el" href="classOpenMS_1_1FeatureGroupingAlgorithmQT.html#ad2ac805e16aa3138b474571b71ed96fe">FeatureGroupingAlgorithmQT</a>
, <a class="el" href="classOpenMS_1_1ProductModel_3_012_01_4.html#a756cc3080036d20555e671249572b4ff">ProductModel< 2 ></a>
, <a class="el" href="classOpenMS_1_1IntList.html#ac244d9a257aab1a24c1a622ccacab745">IntList</a>
, <a class="el" href="classOpenMS_1_1IsotopeDiffFilter.html#a688dd7fe92ebbbb74ca8a20934bfaed9">IsotopeDiffFilter</a>
, <a class="el" href="classOpenMS_1_1ICPLLabeler.html#a4de43939ecee328ea4cd203a39fb3dc0">ICPLLabeler</a>
, <a class="el" href="classOpenMS_1_1BinnedSpectralContrastAngle.html#a7bbdd271873eb4b7a6ca60fb7b26aebc">BinnedSpectralContrastAngle</a>
, <a class="el" href="classOpenMS_1_1LmaGaussModel.html#ac6fd3f4c80bb90b69697208024a0c2ab">LmaGaussModel</a>
, <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithmSpectrumAlignment.html#a9584ec9238430832ac2c381039513247">MapAlignmentAlgorithmSpectrumAlignment</a>
, <a class="el" href="classOpenMS_1_1ExtendedIsotopeModel.html#ac6fd3f4c80bb90b69697208024a0c2ab">ExtendedIsotopeModel</a>
, <a class="el" href="classOpenMS_1_1StringList.html#ac8e505cda2445d4d8e9e9c6a75615f9c">StringList</a>
, <a class="el" href="classOpenMS_1_1BinnedSharedPeakCount.html#a7bbdd271873eb4b7a6ca60fb7b26aebc">BinnedSharedPeakCount</a>
, <a class="el" href="classOpenMS_1_1ZhangSimilarityScore.html#aea33b1d3b12fac714a9b5a9489d9ce10">ZhangSimilarityScore</a>
, <a class="el" href="classOpenMS_1_1SteinScottImproveScore.html#aea33b1d3b12fac714a9b5a9489d9ce10">SteinScottImproveScore</a>
, <a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html#a8655641304d0f901ffb687edca0b59f8">EdwardsLippertIterator</a>
, <a class="el" href="classOpenMS_1_1SILACLabeler.html#a4de43939ecee328ea4cd203a39fb3dc0">SILACLabeler</a>
, <a class="el" href="classOpenMS_1_1EGHModel.html#ac6fd3f4c80bb90b69697208024a0c2ab">EGHModel</a>
, <a class="el" href="classOpenMS_1_1StringList.html#a5f86b59b547048311dd50df5fb6d3bb5">StringList</a>
, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimple.html#a81483ea6deb5aa7b6e11d0c3c871f532">FeatureFinderAlgorithmSimple< PeakType, FeatureType ></a>
, <a class="el" href="classOpenMS_1_1PoseClusteringShiftSuperimposer.html#a0c5a095daf28e276b3a6247305da8006">PoseClusteringShiftSuperimposer</a>
, <a class="el" href="classOpenMS_1_1IntList.html#a78b31299f7218c02ac8fd08da1bc5109">IntList</a>
, <a class="el" href="classOpenMS_1_1TICFilter.html#a688dd7fe92ebbbb74ca8a20934bfaed9">TICFilter</a>
, <a class="el" href="classOpenMS_1_1FastaIterator.html#a8655641304d0f901ffb687edca0b59f8">FastaIterator</a>
, <a class="el" href="classOpenMS_1_1PeakAlignment.html#aea33b1d3b12fac714a9b5a9489d9ce10">PeakAlignment</a>
</li>
<li>createAdduct_()
: <a class="el" href="classOpenMS_1_1MassExplainer.html#a70faf2f0c09117a9a574b6133802c0d1">MassExplainer</a>
</li>
<li>createAndSolveCombinedLPFeatureBased_()
: <a class="el" href="classOpenMS_1_1PSLPFormulation.html#a1086e2f906cf141a7bd2b42da33126b2">PSLPFormulation</a>
</li>
<li>createAndSolveCombinedLPForKnownLCMSMapFeatureBased()
: <a class="el" href="classOpenMS_1_1PSLPFormulation.html#a79f7295c0f12730a06e4e2c871f6a322">PSLPFormulation</a>
</li>
<li>createAndSolveILP_()
: <a class="el" href="classOpenMS_1_1PSLPFormulation.html#abf5924afa9c5296213f21da56c7727c5">PSLPFormulation</a>
</li>
<li>createAndSolveILPForInclusionListCreation()
: <a class="el" href="classOpenMS_1_1PSLPFormulation.html#a7016966748e94bd9bc195d074421a6a7">PSLPFormulation</a>
</li>
<li>createAndSolveILPForKnownLCMSMapFeatureBased()
: <a class="el" href="classOpenMS_1_1PSLPFormulation.html#a2a93e2928cdbb7704c7d49a33f13b091">PSLPFormulation</a>
</li>
<li>createConsensIsotopPattern()
: <a class="el" href="classOpenMS_1_1LCElutionPeak.html#a43982f54908ff5acb4b9372fead9a136">LCElutionPeak</a>
</li>
<li>createContaminants_()
: <a class="el" href="classOpenMS_1_1RawMSSignalSimulation.html#a457f6bf07d5139fb1089f24ff3192a5c">RawMSSignalSimulation</a>
</li>
<li>createDB()
: <a class="el" href="classOpenMS_1_1DBAdapter.html#a12c7992d3823baf95c613c848a6841b4">DBAdapter</a>
</li>
<li>createDirs()
: <a class="el" href="classOpenMS_1_1TOPPASToolVertex.html#acfb07d5a2221df91e09f8711437ee402">TOPPASToolVertex</a>
</li>
<li>createEditor()
: <a class="el" href="classOpenMS_1_1Internal_1_1ListEditorDelegate.html#a0d52173e3f808a8b2a8b8d89df9a72f6">ListEditorDelegate</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1ParamEditorDelegate.html#a0d52173e3f808a8b2a8b8d89df9a72f6">ParamEditorDelegate</a>
</li>
<li>createExperiment()
: <a class="el" href="classOpenMS_1_1RTSimulation.html#a2a79764f03f61629914d871d908d7550">RTSimulation</a>
</li>
<li>createFeatureElutionProfiles()
: <a class="el" href="classOpenMS_1_1SuperHirnParameters.html#aff4b14414ec7d08df087806a67b2c248">SuperHirnParameters</a>
</li>
<li>createFeatureMap_()
: <a class="el" href="classOpenMS_1_1MSSim.html#a5310d1bcc2e2f011b66168535805efa4">MSSim</a>
</li>
<li>createHRData()
: <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmIsotopeWavelet.html#a80a937e9a0dd8e9426bd2e0051ecaa33">FeatureFinderAlgorithmIsotopeWavelet< PeakType, FeatureType ></a>
</li>
<li>createIfNotExists_()
: <a class="el" href="classOpenMS_1_1MetaInfoInterface.html#a23bcf7d2c2357d11e1363dfe44057037">MetaInfoInterface</a>
</li>
<li>createINI_()
: <a class="el" href="classOpenMS_1_1ToolsDialog.html#a969b6bdc8955d8db3a6e80ce98d79234">ToolsDialog</a>
</li>
<li>createIntensityDistribution_()
: <a class="el" href="classOpenMS_1_1Spectrum3DWidget.html#a8d29b96d497828491e5365d8b72ac8f9">Spectrum3DWidget</a>
, <a class="el" href="classOpenMS_1_1Spectrum2DWidget.html#a8d29b96d497828491e5365d8b72ac8f9">Spectrum2DWidget</a>
, <a class="el" href="classOpenMS_1_1SpectrumWidget.html#a420e66e483c7572c9eaadab12504ddad">SpectrumWidget</a>
, <a class="el" href="classOpenMS_1_1Spectrum1DWidget.html#a8d29b96d497828491e5365d8b72ac8f9">Spectrum1DWidget</a>
</li>
<li>createMemdumpIndex()
: <a class="el" href="classOpenMS_1_1CachedmzML.html#ac37f5b61a6e64df22f26f98cd9f4f6d5">CachedmzML</a>
</li>
<li>createMetaDistribution_()
: <a class="el" href="classOpenMS_1_1Spectrum1DWidget.html#a2e15d3f2e85c0800bb63851099aebcfe">Spectrum1DWidget</a>
, <a class="el" href="classOpenMS_1_1Spectrum3DWidget.html#a2e15d3f2e85c0800bb63851099aebcfe">Spectrum3DWidget</a>
, <a class="el" href="classOpenMS_1_1Spectrum2DWidget.html#a2e15d3f2e85c0800bb63851099aebcfe">Spectrum2DWidget</a>
, <a class="el" href="classOpenMS_1_1SpectrumWidget.html#a81c6be0ce95b1d13edbd190b2e00a693">SpectrumWidget</a>
</li>
<li>createModel()
: <a class="el" href="classOpenMS_1_1ModelDescription.html#a3f962855dbc9bbf8074f4306cb9c1a7b">ModelDescription< D ></a>
</li>
<li>createMRMFeature()
: <a class="el" href="classOpenMS_1_1MRMTransitionGroupPicker.html#aea36708606fb59bad2006482d927b061">MRMTransitionGroupPicker</a>
</li>
<li>createMZFeatureClusters()
: <a class="el" href="classOpenMS_1_1MS1FeatureMerger.html#aabd3653180a9a1a69dd1f0340c078cfd">MS1FeatureMerger</a>
</li>
<li>createNewRow()
: <a class="el" href="classOpenMS_1_1Internal_1_1ListTable.html#aef82392725874c1afe25fff26442941d">ListTable</a>
</li>
<li>createOutputDir()
: <a class="el" href="classOpenMS_1_1TOPPASOutputFileListVertex.html#a2fa7e4b77add98c0ee47d3ea81287ea5">TOPPASOutputFileListVertex</a>
</li>
<li>createPeptide_()
: <a class="el" href="classOpenMS_1_1TransitionTSVReader.html#aa2a3155d2826f904abb7d1c07649d3f6">TransitionTSVReader</a>
</li>
<li>createPeptideReferenceMap_()
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#a307733cd001c8d3615d108634b6b606c">TargetedExperiment</a>
</li>
<li>createProtein_()
: <a class="el" href="classOpenMS_1_1TransitionTSVReader.html#aff69ae29d16408dd461156aae5209302">TransitionTSVReader</a>
</li>
<li>createProteinReferenceMap_()
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#a89651ae2cf65b2cec244555fd7a2f7b3">TargetedExperiment</a>
</li>
<li>createProteinSequenceBasedLPInclusionList()
: <a class="el" href="classOpenMS_1_1OfflinePrecursorIonSelection.html#aef1a39ac208f81ba80c824c25d818dba">OfflinePrecursorIonSelection</a>
</li>
<li>createProteinToPeptideLinks_()
: <a class="el" href="classOpenMS_1_1MzTabFile.html#a8f3994889ea1ef896b64932cd89c90e3">MzTabFile</a>
</li>
<li>createRandomPartitions()
: <a class="el" href="classOpenMS_1_1SVMWrapper.html#af28cf6772ab6646d0254bfa4c417d604">SVMWrapper</a>
</li>
<li>createResources()
: <a class="el" href="classOpenMS_1_1TOPPASScene.html#aaec6e7bbc2f0f96ef344c530e7f71c32">TOPPASScene</a>
</li>
<li>createStream_()
: <a class="el" href="classOpenMS_1_1StreamHandler.html#a735bc4d95b5ba320e5b0d8badb1fe3dc">StreamHandler</a>
</li>
<li>createTOPPToolsTreeWidget()
: <a class="el" href="classOpenMS_1_1TOPPASBase.html#a9f3866e4cb832062742a80e5a5c12685">TOPPASBase</a>
</li>
<li>createTransition_()
: <a class="el" href="classOpenMS_1_1TransitionTSVReader.html#afbe7a1ec351b818b34c226762711912e">TransitionTSVReader</a>
</li>
<li>cropFeature_()
: <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a1f44db8f9a5426ed4be51833385f5d6a">FeatureFinderAlgorithmPicked< PeakType, FeatureType ></a>
</li>
<li>CsvFile()
: <a class="el" href="classOpenMS_1_1CsvFile.html#a3180a2ba1c4dab6ceb64635030d1c4f0">CsvFile</a>
</li>
<li>CSVWriter()
: <a class="el" href="structOpenSwath_1_1CSVWriter.html#a8df9aff5dcc26f872868a664fce293c9">CSVWriter</a>
</li>
<li>curPos()
: <a class="el" href="classOpenMS_1_1GzipInputStream.html#a4f7cf5e7696e8f6c80c3d81408c684ec">GzipInputStream</a>
, <a class="el" href="classOpenMS_1_1Bzip2InputStream.html#a4f7cf5e7696e8f6c80c3d81408c684ec">Bzip2InputStream</a>
</li>
<li>currentChanged_()
: <a class="el" href="classOpenMS_1_1EnhancedTabBar.html#aff511255dca06b8e493e1285fdf64029">EnhancedTabBar</a>
, <a class="el" href="classOpenMS_1_1TOPPASTabBar.html#aff511255dca06b8e493e1285fdf64029">TOPPASTabBar</a>
</li>
<li>currentIdChanged()
: <a class="el" href="classOpenMS_1_1EnhancedTabBar.html#a719fcc1135a0fc6ab8532d9a8ced4b40">EnhancedTabBar</a>
, <a class="el" href="classOpenMS_1_1TOPPASTabBar.html#a719fcc1135a0fc6ab8532d9a8ced4b40">TOPPASTabBar</a>
</li>
<li>currentLayerParametersChanged_()
: <a class="el" href="classOpenMS_1_1Spectrum2DCanvas.html#a7c138862dcb47068bb1ee048594922de">Spectrum2DCanvas</a>
</li>
<li>currentLayerParamtersChanged_()
: <a class="el" href="classOpenMS_1_1Spectrum1DCanvas.html#a5372a1dbe3b69a4a76f22dbb974f795a">Spectrum1DCanvas</a>
, <a class="el" href="classOpenMS_1_1Spectrum3DCanvas.html#a5372a1dbe3b69a4a76f22dbb974f795a">Spectrum3DCanvas</a>
</li>
<li>currentPeakData_()
: <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#a19ec6e083466c08ecb046f6cb4e1c5c9">SpectrumCanvas</a>
</li>
<li>curve()
: <a class="el" href="classOpenMS_1_1Math_1_1ROCCurve.html#a3f34900da9e4891b51201eca98da356d">ROCCurve</a>
</li>
<li>cut()
: <a class="el" href="classOpenMS_1_1ClusterAnalyzer.html#a1ddae30375fef566e4a1f53fb43baba9">ClusterAnalyzer</a>
</li>
<li>cutoffNeg()
: <a class="el" href="classOpenMS_1_1Math_1_1ROCCurve.html#adfc68429e56bd216d87ea760d3510a2c">ROCCurve</a>
</li>
<li>cutoffPos()
: <a class="el" href="classOpenMS_1_1Math_1_1ROCCurve.html#a9f2634099fda0b4e2dd74add7d35d417">ROCCurve</a>
</li>
<li>CV()
: <a class="el" href="structOpenMS_1_1TargetedExperimentHelper_1_1CV.html#aa18c13e9945fd4e877017f69bdaad1af">CV</a>
</li>
<li>CVMappingFile()
: <a class="el" href="classOpenMS_1_1CVMappingFile.html#a7616d4eeb58a245229a1e46bcb5f570c">CVMappingFile</a>
</li>
<li>CVMappingRule()
: <a class="el" href="classOpenMS_1_1CVMappingRule.html#a5326f34a9ffa80e0cdb73d3515df1a2c">CVMappingRule</a>
</li>
<li>CVMappings()
: <a class="el" href="classOpenMS_1_1CVMappings.html#a731f0170fea32bd957724a1e5e836e26">CVMappings</a>
</li>
<li>CVMappingTerm()
: <a class="el" href="classOpenMS_1_1CVMappingTerm.html#a276fcda05f9f1f55578a2ceb15ae250f">CVMappingTerm</a>
</li>
<li>cvParam_()
: <a class="el" href="classOpenMS_1_1Internal_1_1MzDataHandler.html#a246d2ed7a27643da899d40062055882a">MzDataHandler< MapType ></a>
</li>
<li>CVReference()
: <a class="el" href="classOpenMS_1_1CVReference.html#a617c344bfc65046e56b3d55b7ca17679">CVReference</a>
</li>
<li>cvStringToEnum_()
: <a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#ab42b06789e80b05f0b754201cb1deccc">XMLHandler</a>
</li>
<li>CVTerm()
: <a class="el" href="classOpenMS_1_1CVTerm.html#a3077cef8395c860bf4d53ff8c5349334">CVTerm</a>
, <a class="el" href="structOpenMS_1_1ControlledVocabulary_1_1CVTerm.html#ac45bb32a518e5c07d8ed8da66493474d">ControlledVocabulary::CVTerm</a>
, <a class="el" href="classOpenMS_1_1CVTerm.html#ac45bb32a518e5c07d8ed8da66493474d">CVTerm</a>
, <a class="el" href="structOpenMS_1_1ControlledVocabulary_1_1CVTerm.html#a41c5b47f94823493426b3b0cf8f7530c">ControlledVocabulary::CVTerm</a>
</li>
<li>CVTermList()
: <a class="el" href="classOpenMS_1_1CVTermList.html#af168ac62653c9369125fbcc9cc6243e2">CVTermList</a>
</li>
</ul>
</div><!-- contents -->
<HR style="height:1px; border:none; border-top:1px solid #c0c0c0;">
<TABLE width="100%" border="0">
<TR>
<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:20:59 using doxygen 1.8.5</font></TD>
</TR>
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