File: functions_func_0x73.html

package info (click to toggle)
openms 1.11.1-5
links: PTS, VCS
area: main
in suites: jessie, jessie-kfreebsd
size: 436,688 kB
ctags: 150,907
sloc: cpp: 387,126; xml: 71,547; python: 7,764; ansic: 2,626; php: 2,499; sql: 737; ruby: 342; sh: 325; makefile: 128
file content (3557 lines) | stat: -rw-r--r-- 205,915 bytes
<HTML>
<HEAD>
<TITLE>Class Members - Functions</TITLE>
<LINK HREF="doxygen.css" REL="stylesheet" TYPE="text/css">
<LINK HREF="style_ini.css" REL="stylesheet" TYPE="text/css">
</HEAD>
<BODY BGCOLOR="#FFFFFF">
<A href="index.html">Home</A> &nbsp;&middot;
<A href="classes.html">Classes</A> &nbsp;&middot;
<A href="annotated.html">Annotated Classes</A> &nbsp;&middot;
<A href="modules.html">Modules</A> &nbsp;&middot;
<A href="functions_func.html">Members</A> &nbsp;&middot;
<A href="namespaces.html">Namespaces</A> &nbsp;&middot;
<A href="pages.html">Related Pages</A>
<HR style="height:1px; border:none; border-top:1px solid #c0c0c0;">
<!-- Generated by Doxygen 1.8.5 -->
</div><!-- top -->
<div class="contents">
&#160;

<h3><a class="anchor" id="index_s"></a>- s -</h3><ul>
<li>Sample()
: <a class="el" href="classOpenMS_1_1Sample.html#af338d729c459654963a511ac9f383db4">Sample</a>
</li>
<li>sample_stddev()
: <a class="el" href="classOpenSwath_1_1mean__and__stddev.html#a6cafc108f630a861bf156b0627e95325">mean_and_stddev</a>
</li>
<li>sample_variance()
: <a class="el" href="classOpenSwath_1_1mean__and__stddev.html#a83d588b08707b51ef0f5ce28e87458fd">mean_and_stddev</a>
</li>
<li>samplePeptideModel1D_()
: <a class="el" href="classOpenMS_1_1RawMSSignalSimulation.html#a49d86f146514f9b56b708ecb4d1ab9fe">RawMSSignalSimulation</a>
</li>
<li>samplePeptideModel2D_()
: <a class="el" href="classOpenMS_1_1RawMSSignalSimulation.html#a16ebd8b86c015dc51ba4b39cf74d7cdc">RawMSSignalSimulation</a>
</li>
<li>sampleTheCMarrWavelet_()
: <a class="el" href="classOpenMS_1_1IsotopeWaveletTransform.html#a09fb7c2c3438f28ddfb34466069947eb">IsotopeWaveletTransform&lt; PeakType &gt;</a>
</li>
<li>SampleTreatment()
: <a class="el" href="classOpenMS_1_1SampleTreatment.html#add876bbcecf14ebd488fbdea876c6ddf">SampleTreatment</a>
</li>
<li>SampleVisualizer()
: <a class="el" href="classOpenMS_1_1SampleVisualizer.html#ac35ba37cd3bee23500a394aad9d2846b">SampleVisualizer</a>
</li>
<li>sanityCheck_()
: <a class="el" href="classOpenMS_1_1TOPPASScene.html#a94ea52b8211f01f95c28c62e5cd2e4a6">TOPPASScene</a>
</li>
<li>save()
: <a class="el" href="classOpenMS_1_1SuffixArray.html#ac089570bb6a9e2fe55702ca4401588d6">SuffixArray</a>
, <a class="el" href="classOpenMS_1_1SuffixArraySeqan.html#af055ab1935e7aa87eb45534e2d26115c">SuffixArraySeqan</a>
, <a class="el" href="classOpenMS_1_1SuffixArrayTrypticCompressed.html#a1c7203771149727e897bac6c1ce88a7f">SuffixArrayTrypticCompressed</a>
</li>
<li>save_()
: <a class="el" href="classOpenMS_1_1Internal_1_1XMLFile.html#aa99a8fa1726ecc3b865167eea1c17db7">XMLFile</a>
</li>
<li>saveAll_()
: <a class="el" href="classOpenMS_1_1MetaDataBrowser.html#aa530ea23dc8a48d5c1eafff3d9a07b62">MetaDataBrowser</a>
</li>
<li>saveAsImage()
: <a class="el" href="classOpenMS_1_1Spectrum1DWidget.html#a94018f18eac502dbd7e8cd63a54d9044">Spectrum1DWidget</a>
, <a class="el" href="classOpenMS_1_1SpectrumWidget.html#a94018f18eac502dbd7e8cd63a54d9044">SpectrumWidget</a>
</li>
<li>saveCurrentLayer()
: <a class="el" href="classOpenMS_1_1Spectrum1DCanvas.html#a2f110bc486f611d894b6dae8f1c0ff86">Spectrum1DCanvas</a>
, <a class="el" href="classOpenMS_1_1Spectrum2DCanvas.html#a2f110bc486f611d894b6dae8f1c0ff86">Spectrum2DCanvas</a>
, <a class="el" href="classOpenMS_1_1Spectrum3DCanvas.html#a2f110bc486f611d894b6dae8f1c0ff86">Spectrum3DCanvas</a>
, <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#a66a7ababd50d36119862eeb1e58527b6">SpectrumCanvas</a>
</li>
<li>saveCurrentPipelineAs()
: <a class="el" href="classOpenMS_1_1TOPPASBase.html#ae1ce47a5e7d3b7b35354920271083d25">TOPPASBase</a>
</li>
<li>saveFile()
: <a class="el" href="classOpenMS_1_1INIFileEditorWindow.html#af41570deb3dd3d8aa9c5d8be5cf2eb50">INIFileEditorWindow</a>
</li>
<li>saveFileAs()
: <a class="el" href="classOpenMS_1_1INIFileEditorWindow.html#ab0ebf393b95cb80b51232c124deec65f">INIFileEditorWindow</a>
</li>
<li>saveIdXML_()
: <a class="el" href="classOpenMS_1_1SpectraIdentificationViewWidget.html#af9bf4412b6ee4b097c7e02b73fda8eb9">SpectraIdentificationViewWidget</a>
</li>
<li>saveIfChanged()
: <a class="el" href="classOpenMS_1_1TOPPASScene.html#a4ef58e349bfa8e9d59f62b180c57679e">TOPPASScene</a>
</li>
<li>saveImageAs()
: <a class="el" href="classOpenMS_1_1IDEvaluationBase.html#a775903b74054748ed5d9105efcfa8c07">IDEvaluationBase</a>
</li>
<li>SaveImageDialog()
: <a class="el" href="classOpenMS_1_1SaveImageDialog.html#a351661ff932c871b27e480b8b3bbd5ea">SaveImageDialog</a>
</li>
<li>saveLayerAll()
: <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a90d5b5ec78628cc9142d80c36c6b08ff">TOPPViewBase</a>
</li>
<li>saveLayerVisible()
: <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a856aff148d2c31e3863f4ac9eb5ec0f2">TOPPViewBase</a>
</li>
<li>saveMe()
: <a class="el" href="classOpenMS_1_1TOPPASScene.html#affc8f20c9c3dafd2a9db524cfb06f112">TOPPASScene</a>
</li>
<li>saveModel()
: <a class="el" href="classOpenMS_1_1SVMWrapper.html#a96316d5483ccd19f08fcee6cae6d60f6">SVMWrapper</a>
</li>
<li>savePipeline()
: <a class="el" href="classOpenMS_1_1TOPPASBase.html#a7134dba5f240779e2f9796ceaa1bdb2c">TOPPASBase</a>
</li>
<li>savePipelineAs()
: <a class="el" href="classOpenMS_1_1TOPPASBase.html#a0c3d3da9c968a52089d602934ace3f28">TOPPASBase</a>
</li>
<li>savePipelineResourceFile()
: <a class="el" href="classOpenMS_1_1TOPPASBase.html#acc9e48279d18b4b5caa6823bee22f8d8">TOPPASBase</a>
</li>
<li>savePreferences()
: <a class="el" href="classOpenMS_1_1TOPPASBase.html#a23668b43705781c1cd284bda6ab40abc">TOPPASBase</a>
, <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a23668b43705781c1cd284bda6ab40abc">TOPPViewBase</a>
</li>
<li>savePreprocessedDB_()
: <a class="el" href="classOpenMS_1_1PrecursorIonSelectionPreprocessing.html#a1dd5a91759c3271dfe3718e5766aa8db">PrecursorIonSelectionPreprocessing</a>
</li>
<li>savePreprocessedDBWithRT_()
: <a class="el" href="classOpenMS_1_1PrecursorIonSelectionPreprocessing.html#a242e34f14784f37ab0432e1c3222c86e">PrecursorIonSelectionPreprocessing</a>
</li>
<li>saveToClipboard()
: <a class="el" href="classOpenMS_1_1TOPPASBase.html#af25c1f2cd8bb8861608b90a8f2d90c92">TOPPASBase</a>
</li>
<li>SavitzkyGolayFilter()
: <a class="el" href="classOpenMS_1_1SavitzkyGolayFilter.html#a5e11108ff74b5b58cd1578f58cd6613b">SavitzkyGolayFilter</a>
</li>
<li>scale_()
: <a class="el" href="classOpenMS_1_1AxisPainter.html#ab677003265669907266572bbefc8e026">AxisPainter</a>
</li>
<li>scaleData()
: <a class="el" href="classOpenMS_1_1SVMWrapper.html#aa96446e058c4ae9dd5e5aa1e1be58362">SVMWrapper</a>
</li>
<li>scaleDescriptorSet_()
: <a class="el" href="classOpenMS_1_1SvmTheoreticalSpectrumGenerator.html#a86741b436e08eeda23dade3f17cda970">SvmTheoreticalSpectrumGenerator</a>
</li>
<li>scaledIntensity()
: <a class="el" href="classOpenMS_1_1Spectrum3DOpenGLCanvas.html#ab5639c798e4bb7a670e7b3b7a7d89271">Spectrum3DOpenGLCanvas</a>
</li>
<li>scaledInversMZ()
: <a class="el" href="classOpenMS_1_1Spectrum3DOpenGLCanvas.html#adb6389eb2a4949a22d634db16eb1bd50">Spectrum3DOpenGLCanvas</a>
</li>
<li>scaledInversRT()
: <a class="el" href="classOpenMS_1_1Spectrum3DOpenGLCanvas.html#a936e91db0e377673f4c73f0660da5532">Spectrum3DOpenGLCanvas</a>
</li>
<li>scaledMZ()
: <a class="el" href="classOpenMS_1_1Spectrum3DOpenGLCanvas.html#ad0c152ef72e2819d388a0c20b09ffc1a">Spectrum3DOpenGLCanvas</a>
</li>
<li>scaledRT()
: <a class="el" href="classOpenMS_1_1Spectrum3DOpenGLCanvas.html#a6632a14b85fadfe89719d9dbf7a8560c">Spectrum3DOpenGLCanvas</a>
</li>
<li>Scaler()
: <a class="el" href="classOpenMS_1_1Scaler.html#a80c5751274ea161dcb0fe29d259d8264">Scaler</a>
</li>
<li>scaleSingleFeature_()
: <a class="el" href="classOpenMS_1_1SvmTheoreticalSpectrumGenerator.html#a01b2ecfa118e5ad632ece3b09987856c">SvmTheoreticalSpectrumGenerator</a>
</li>
<li>ScanWindow()
: <a class="el" href="structOpenMS_1_1ScanWindow.html#ac1cfdd635cff4ae566faedf226ca3336">ScanWindow</a>
</li>
<li>ScanWindowVisualizer()
: <a class="el" href="classOpenMS_1_1ScanWindowVisualizer.html#ac90b013f53e70efe2dda9e74e90df793">ScanWindowVisualizer</a>
</li>
<li>score()
: <a class="el" href="classOpenMS_1_1DiaPrescore.html#ad0b8f65b8fbe33b20dbbf39d61d86126">DiaPrescore</a>
</li>
<li>score_with_isotopes()
: <a class="el" href="classOpenMS_1_1DIAScoring.html#a16765aabcbbf4da0e3f6c7fac739b0f4">DIAScoring</a>
</li>
<li>scoreAssay_()
: <a class="el" href="classOpenMS_1_1ConfidenceScoring.html#a6828965571da69e47048d0280ec107dd">ConfidenceScoring</a>
</li>
<li>scoreCalculation_()
: <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithmSpectrumAlignment.html#a7be42d61be33e31f1725bc3a4e84935c">MapAlignmentAlgorithmSpectrumAlignment</a>
</li>
<li>scoreETDFeatures_()
: <a class="el" href="classOpenMS_1_1CompNovoIonScoring.html#aae82670bb6d9fc2f1dd442d37e635881">CompNovoIonScoring</a>
</li>
<li>scoreFeature_()
: <a class="el" href="classOpenMS_1_1ConfidenceScoring.html#adbdcbb0fa0155902fe4b5faae41df7ab">ConfidenceScoring</a>
</li>
<li>scoreHits()
: <a class="el" href="classOpenMS_1_1PILISCrossValidation.html#a245089e46288838979a63cd8f9432537">PILISCrossValidation</a>
</li>
<li>scoreIsotopePattern_()
: <a class="el" href="classOpenMS_1_1DIAScoring.html#a969fa12d03881ce53dd7fd10357be8fe">DIAScoring</a>
</li>
<li>scoreIsotopes()
: <a class="el" href="classOpenMS_1_1CompNovoIonScoringBase.html#a820388f74f63cbdc14d9aa1293eb3588">CompNovoIonScoringBase</a>
</li>
<li>scoreIsotopes_()
: <a class="el" href="classOpenMS_1_1CompNovoIonScoringBase.html#a618ca73dc5f344d7b2401248faa0f5f7">CompNovoIonScoringBase</a>
</li>
<li>scoreMap()
: <a class="el" href="classOpenMS_1_1ConfidenceScoring.html#ae432ca06f1c61329d4dff693498b6996">ConfidenceScoring</a>
</li>
<li>scoreMZ2_()
: <a class="el" href="classOpenMS_1_1FeatureFindingMetabo.html#a53e41db440d3ce94e33389a38a9b57a6">FeatureFindingMetabo</a>
</li>
<li>scoreMZ_()
: <a class="el" href="classOpenMS_1_1FeatureFindingMetabo.html#a1ed070598074bcffef7b67e94a580189">FeatureFindingMetabo</a>
</li>
<li>scorePeakgroups_()
: <a class="el" href="classOpenMS_1_1MRMFeatureFinderScoring.html#a1d7f11c2be93f8140f508487ba0ae718">MRMFeatureFinderScoring</a>
</li>
<li>scoreRT_()
: <a class="el" href="classOpenMS_1_1FeatureFindingMetabo.html#a5e28b163adf60cfc128a1cd010664d90">FeatureFindingMetabo</a>
</li>
<li>scoreSpectra()
: <a class="el" href="classOpenMS_1_1CompNovoIonScoring.html#a1de209ac6cfc1b2f317c8efafe2d0763">CompNovoIonScoring</a>
</li>
<li>scoreSpectra_()
: <a class="el" href="classOpenMS_1_1PILISCrossValidation.html#a8f9b1e24219afed2445563a7305b6095">PILISCrossValidation</a>
</li>
<li>scoreSpectrum()
: <a class="el" href="classOpenMS_1_1CompNovoIonScoringCID.html#afc433409d86d0b3a3411c4cbbdbf890d">CompNovoIonScoringCID</a>
</li>
<li>scoreThis_()
: <a class="el" href="classOpenMS_1_1IsotopeWaveletTransform.html#a93b2fba796a1b0b3364ee6ce60001843">IsotopeWaveletTransform&lt; PeakType &gt;</a>
</li>
<li>scoreWitnessSet_()
: <a class="el" href="classOpenMS_1_1CompNovoIonScoring.html#a65f40aea9f37b40b63c5c6b71251e9f9">CompNovoIonScoring</a>
, <a class="el" href="classOpenMS_1_1CompNovoIonScoringBase.html#a280bb7412e321418ec2312c4ccf884be">CompNovoIonScoringBase</a>
, <a class="el" href="classOpenMS_1_1CompNovoIonScoringCID.html#a65f40aea9f37b40b63c5c6b71251e9f9">CompNovoIonScoringCID</a>
</li>
<li>scoring_()
: <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithmSpectrumAlignment.html#a33e063cd96aaa8be717605e697029a54">MapAlignmentAlgorithmSpectrumAlignment</a>
</li>
<li>search()
: <a class="el" href="classOpenMS_1_1StringList.html#af8f3d899be867b5da6825f304f3e7030">StringList</a>
</li>
<li>search_AC_pattern()
: <a class="el" href="classOpenMS_1_1MS2Info.html#a6c8ad084bb2966dd7cde4d72b3d8d9b5">MS2Info</a>
</li>
<li>searchInScan_()
: <a class="el" href="classOpenMS_1_1TwoDOptimization.html#a74f373ec1e1e803064c86d9b0f18abdd">TwoDOptimization</a>
</li>
<li>searchMass_()
: <a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html#a638b842e76aa60cc9b33e9d616e54fbe">AccurateMassSearchEngine</a>
</li>
<li>searchModifications()
: <a class="el" href="classOpenMS_1_1ModificationsDB.html#a29efc7a8f2b8179bc2748188bd229e04">ModificationsDB</a>
</li>
<li>searchNextCell_()
: <a class="el" href="classOpenMS_1_1HashGrid_1_1Iterator.html#ad36a37072ea4da6d49e89fce57bf4aa8">HashGrid&lt; Cluster &gt;::Iterator</a>
, <a class="el" href="classOpenMS_1_1HashGrid_1_1ConstIterator.html#ad36a37072ea4da6d49e89fce57bf4aa8">HashGrid&lt; Cluster &gt;::ConstIterator</a>
</li>
<li>SearchParameters()
: <a class="el" href="structOpenMS_1_1ProteinIdentification_1_1SearchParameters.html#a99f4b7d19585e6f1251cc9d8e1367f77">ProteinIdentification::SearchParameters</a>
</li>
<li>searchSuffix()
: <a class="el" href="classOpenMS_1_1StringList.html#a2b0a71890dfcaf40c16467f6e7ae7192">StringList</a>
</li>
<li>searchTerminalModifications()
: <a class="el" href="classOpenMS_1_1ModificationsDB.html#a4ade554a9fd87c5c8c8fce6de028a9fa">ModificationsDB</a>
</li>
<li>searchTransformation_()
: <a class="el" href="classOpenMS_1_1CompareFouriertransform.html#ac7f77788071224fb4209e048171b78fa">CompareFouriertransform</a>
</li>
<li>SeedListGenerator()
: <a class="el" href="classOpenMS_1_1SeedListGenerator.html#ac2b15c68bc927e2aa5ca913e4911d24d">SeedListGenerator</a>
</li>
<li>seekGToSavedPosition()
: <a class="el" href="structOpenMS_1_1FuzzyStringComparator_1_1InputLine.html#a88ba980faed2c5dc743ce1ca2a2bb86e">FuzzyStringComparator::InputLine</a>
</li>
<li>selectAll()
: <a class="el" href="classOpenMS_1_1Annotations1DContainer.html#ab6658ed404200bd7aaca5629db064645">Annotations1DContainer</a>
</li>
<li>selectColor()
: <a class="el" href="classOpenMS_1_1SILACAnalyzer.html#a29e0898fe9ab9db3ee0b22cee7a4e9c8">SILACAnalyzer</a>
</li>
<li>selected()
: <a class="el" href="classOpenMS_1_1Internal_1_1ParamTree.html#a1277d416ce8721c3980533b2305a7395">ParamTree</a>
</li>
<li>selectFragments()
: <a class="el" href="classOpenMS_1_1MRMFragmentSelection.html#ad7b1d70747e6a6224869e0278c4cbfee">MRMFragmentSelection</a>
</li>
<li>selectionChanged()
: <a class="el" href="classOpenMS_1_1Internal_1_1ParamTree.html#af2bc875abb124d7aad62a23098941446">ParamTree</a>
</li>
<li>selectionCopied()
: <a class="el" href="classOpenMS_1_1TOPPASScene.html#a57e9d6cb6cc2b5e93578dd3ca9e4d3bb">TOPPASScene</a>
</li>
<li>selectItemAt()
: <a class="el" href="classOpenMS_1_1Annotations1DContainer.html#af4744afb334d7411bc83ec49e44301fe">Annotations1DContainer</a>
</li>
<li>selectPivotIons_()
: <a class="el" href="classOpenMS_1_1CompNovoIdentificationBase.html#a41eac7221a0bd2a75e451ee5192d7d0d">CompNovoIdentificationBase</a>
</li>
<li>selectSwathTransitions()
: <a class="el" href="classOpenMS_1_1OpenSwathHelper.html#a36307242d32a7a1619073838a87ce671">OpenSwathHelper</a>
</li>
<li>SemanticValidator()
: <a class="el" href="classOpenMS_1_1Internal_1_1SemanticValidator.html#a2874828dc09d35a93970bdd0df21f066">SemanticValidator</a>
</li>
<li>sendClipboardContent()
: <a class="el" href="classOpenMS_1_1TOPPASBase.html#a09148723879585973ac00755a420b3e4">TOPPASBase</a>
</li>
<li>sendCursorStatus()
: <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#a51b3d6d43aca0d30b29aa842a770474f">SpectrumCanvas</a>
, <a class="el" href="classOpenMS_1_1SpectrumWidget.html#a51b3d6d43aca0d30b29aa842a770474f">SpectrumWidget</a>
, <a class="el" href="classOpenMS_1_1TOPPASWidget.html#a6ce192623fbce41816a9feb62587b9bb">TOPPASWidget</a>
</li>
<li>sendStatus()
: <a class="el" href="classOpenMS_1_1BaseVisualizerGUI.html#a1e85416535ebbb1bf598cdecbb9b56f5">BaseVisualizerGUI</a>
</li>
<li>sendStatusMessage()
: <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#aa3cd682b85da426a95350b870e30376c">SpectrumCanvas</a>
, <a class="el" href="classOpenMS_1_1SpectrumWidget.html#a975b2d9e9aecfe1f2ae90625d51a735a">SpectrumWidget</a>
, <a class="el" href="classOpenMS_1_1TOPPASWidget.html#aa3cd682b85da426a95350b870e30376c">TOPPASWidget</a>
</li>
<li>SequestInfile()
: <a class="el" href="classOpenMS_1_1SequestInfile.html#a8fa0d737e3eebd6898556bc698823164">SequestInfile</a>
</li>
<li>SequestOutfile()
: <a class="el" href="classOpenMS_1_1SequestOutfile.html#a2c033bd925c076133f5d9bea620131b3">SequestOutfile</a>
</li>
<li>set()
: <a class="el" href="classOpenMS_1_1IsotopeDistribution.html#ad66e45f6a7c4a7224810862a41545b1b">IsotopeDistribution</a>
, <a class="el" href="classOpenMS_1_1Exception_1_1GlobalExceptionHandler.html#a9a98e5277272ac8ae6ea21ec2befcf0f">GlobalExceptionHandler</a>
, <a class="el" href="classOpenMS_1_1Date.html#aa13ff5733f0204e32f127ef95816a46d">Date</a>
, <a class="el" href="classOpenMS_1_1DateTime.html#afb2353cf7399e53aa4b59ce122c6fc49">DateTime</a>
, <a class="el" href="classOpenMS_1_1MzTabDouble.html#abb46991261eb07359ef0078f3d241de7">MzTabDouble</a>
, <a class="el" href="classOpenMS_1_1MzTabDoubleList.html#ac9fa4cfe7a03bed9f671e0c255ad875c">MzTabDoubleList</a>
, <a class="el" href="classOpenMS_1_1MzTabInteger.html#afbcb031fb8d2b1e3da4260bbeb23e8d7">MzTabInteger</a>
, <a class="el" href="classOpenMS_1_1MzTabBoolean.html#aa9c9b01abc8822cc0f3b1a63c593ef4f">MzTabBoolean</a>
, <a class="el" href="classOpenMS_1_1MzTabString.html#aa74b472fae61441828fa47ad3c62012a">MzTabString</a>
, <a class="el" href="classOpenMS_1_1MzTabParameterList.html#a1208aa1099c80173f1425615d6329550">MzTabParameterList</a>
, <a class="el" href="classOpenMS_1_1MzTabStringList.html#ad71538e0a9c3081ec87a4a887330cc1b">MzTabStringList</a>
, <a class="el" href="classOpenMS_1_1MzTabModificationList.html#a13114d0a7bbc495ac940a5b0ca0d4c1d">MzTabModificationList</a>
, <a class="el" href="classOpenMS_1_1CentroidData.html#a297329c3ed170a13676cb6d5c792c443">CentroidData</a>
, <a class="el" href="classOpenMS_1_1RawData.html#a697ab51957e977fd569b3fdff316f760">RawData</a>
</li>
<li>set2DData()
: <a class="el" href="classOpenMS_1_1MSExperiment.html#a62fd7dbc7f6e5cc960d5db28524512f8">MSExperiment&lt; PeakT, ChromatogramPeakT &gt;</a>
</li>
<li>set_AC()
: <a class="el" href="classOpenMS_1_1MS2Info.html#aaadceed4c6319e9d1044fa414dc3269f">MS2Info</a>
</li>
<li>set_alignment_error_down()
: <a class="el" href="classOpenMS_1_1SHFeature.html#a201f89bb5d1283a36b5276b67078fc53">SHFeature</a>
</li>
<li>set_alignment_error_up()
: <a class="el" href="classOpenMS_1_1SHFeature.html#afb2c107b1e9945827c97121ab8f751c2">SHFeature</a>
</li>
<li>set_apex_peak_intensity()
: <a class="el" href="classOpenMS_1_1SHFeature.html#aa29c289933f023ffda18377012e2f410">SHFeature</a>
</li>
<li>set_apex_retention_time()
: <a class="el" href="classOpenMS_1_1LCElutionPeak.html#a49294cdec251db872fb2b9355a697057">LCElutionPeak</a>
</li>
<li>set_charge_state()
: <a class="el" href="classOpenMS_1_1SHFeature.html#ae2e9f8c3eadcc51e0bebbf433dc62f5e">SHFeature</a>
</li>
<li>set_Chrg()
: <a class="el" href="classOpenMS_1_1MSPeak.html#a5b791d077b57e5a3f643e498480bcc3f">MSPeak</a>
</li>
<li>set_CHRG()
: <a class="el" href="classOpenMS_1_1MS2Info.html#a0fea53aaa7a363839e2fd09bcef9cf2c">MS2Info</a>
</li>
<li>set_chromatogram_flag()
: <a class="el" href="classOpenMS_1_1LayerData.html#a43f92585590faa785495d78c87c98a68">LayerData</a>
</li>
<li>set_DELTA_CN()
: <a class="el" href="classOpenMS_1_1MS2Info.html#ab533f4fe9ffd08a4b2e125af78d0862f">MS2Info</a>
</li>
<li>set_dia_parameters()
: <a class="el" href="classOpenMS_1_1DIAScoring.html#aca605e154d4fd1e0951e3205c90a51c3">DIAScoring</a>
</li>
<li>set_end_retention_time()
: <a class="el" href="classOpenMS_1_1LCElutionPeak.html#aa2f8a9c427c40f47910cdbfa03915cd8">LCElutionPeak</a>
</li>
<li>set_feature_ID()
: <a class="el" href="classOpenMS_1_1SHFeature.html#ab89d41ecea95fdfe48a60fb13470610a">SHFeature</a>
</li>
<li>set_feature_match_status()
: <a class="el" href="classOpenMS_1_1SHFeature.html#abd48ca2cae9c26b9d3ba5d730816fe9b">SHFeature</a>
</li>
<li>set_FEATURE_PI()
: <a class="el" href="classOpenMS_1_1SHFeature.html#a60f504a6a951089dd7342bbc9c71695f">SHFeature</a>
</li>
<li>set_FULL_SQ()
: <a class="el" href="classOpenMS_1_1MS2Info.html#a2dab763e8ab40c9bcfe481b5bc5c0d44">MS2Info</a>
</li>
<li>set_MASTER_ID()
: <a class="el" href="classOpenMS_1_1LCMS.html#ad439ff344eee2c26ba2bd79d0c0f5ed9">LCMS</a>
, <a class="el" href="classOpenMS_1_1SHFeature.html#ad439ff344eee2c26ba2bd79d0c0f5ed9">SHFeature</a>
</li>
<li>set_MONO_MZ()
: <a class="el" href="classOpenMS_1_1MS2Info.html#a1c336e5662f40b63e025af870413177a">MS2Info</a>
</li>
<li>set_MS2_TYPE_TAG()
: <a class="el" href="classOpenMS_1_1MS2Info.html#a0a5d190393e9a223474a87b7aa87e321">MS2Info</a>
</li>
<li>set_MZ()
: <a class="el" href="classOpenMS_1_1SHFeature.html#adaf208ac9da28efbf9ac7178e8496b5c">SHFeature</a>
</li>
<li>set_MZ_END()
: <a class="el" href="classOpenMS_1_1SHFeature.html#acb3650648136be91a11a842016e7e737">SHFeature</a>
</li>
<li>set_MZ_START()
: <a class="el" href="classOpenMS_1_1SHFeature.html#ad2d77de27f14cc62f3c72c489a098db6">SHFeature</a>
</li>
<li>set_NEUTRAL_MR()
: <a class="el" href="classOpenMS_1_1MS2Info.html#af9989986af9ffdd1e25f475f19d31aed">MS2Info</a>
</li>
<li>set_peak_area()
: <a class="el" href="classOpenMS_1_1SHFeature.html#af987d88728f330c662831d206b299f05">SHFeature</a>
</li>
<li>set_peak_score()
: <a class="el" href="classOpenMS_1_1SHFeature.html#a9f2869f9e228747573d24e6b3cc82860">SHFeature</a>
</li>
<li>set_PEP_PROB()
: <a class="el" href="classOpenMS_1_1MS2Info.html#a9b459be860a3352c1006015d39087f88">MS2Info</a>
</li>
<li>set_PREV_AA()
: <a class="el" href="classOpenMS_1_1MS2Info.html#a7755c11b73ae63e5fe273f31e12b60d6">MS2Info</a>
</li>
<li>set_raw_MZ()
: <a class="el" href="classOpenMS_1_1SHFeature.html#af932f92e19797e102406d9abd4dceaf3">SHFeature</a>
</li>
<li>set_raw_retention_time_apex()
: <a class="el" href="classOpenMS_1_1SHFeature.html#ad6ef8d8ce51e78fcb7a10d8a5e353820">SHFeature</a>
</li>
<li>set_retention_time()
: <a class="el" href="classOpenMS_1_1MSPeak.html#a20f37f1701425aa459d6e94ed4021b7c">MSPeak</a>
, <a class="el" href="classOpenMS_1_1SHFeature.html#a20f37f1701425aa459d6e94ed4021b7c">SHFeature</a>
</li>
<li>set_retention_time_END()
: <a class="el" href="classOpenMS_1_1SHFeature.html#a082a347ebfbc6c2787d1cfc63151144b">SHFeature</a>
</li>
<li>set_retention_time_START()
: <a class="el" href="classOpenMS_1_1SHFeature.html#a1cf41a4cda12031a2d98115ec32ea94c">SHFeature</a>
</li>
<li>set_scan_end()
: <a class="el" href="classOpenMS_1_1SHFeature.html#a0932b29f54649f0feb6aa34d23f7f341">SHFeature</a>
</li>
<li>set_SCAN_END()
: <a class="el" href="classOpenMS_1_1MS2Info.html#aba3da4de7517b4f691738dff7a83b63d">MS2Info</a>
</li>
<li>set_scan_number()
: <a class="el" href="classOpenMS_1_1SHFeature.html#a924791374fc40450bf1fa49859d7b832">SHFeature</a>
</li>
<li>set_SCAN_START()
: <a class="el" href="classOpenMS_1_1MS2Info.html#a8dacd3d5179b0e407bfdb645db97bbb0">MS2Info</a>
</li>
<li>set_scan_start()
: <a class="el" href="classOpenMS_1_1SHFeature.html#a702505a6e19d6a6a8a45e9ab226f0476">SHFeature</a>
</li>
<li>set_SCORE_HOLDER()
: <a class="el" href="classOpenMS_1_1SHFeature.html#a4e6ba4757e8935e072c95fa81e2d66c9">SHFeature</a>
</li>
<li>set_spec_name()
: <a class="el" href="classOpenMS_1_1LCMS.html#ac8140cda9f8c984fdd4ac852b349015e">LCMS</a>
</li>
<li>set_spectrum_ID()
: <a class="el" href="classOpenMS_1_1LCMS.html#ae7a1a66bf017082d76cf96c65310faf3">LCMS</a>
, <a class="el" href="classOpenMS_1_1SHFeature.html#ae7a1a66bf017082d76cf96c65310faf3">SHFeature</a>
</li>
<li>set_SQ()
: <a class="el" href="classOpenMS_1_1MS2Info.html#a58653d5ad9e43a497c2576c5b4a28ef4">MS2Info</a>
</li>
<li>set_start_retention_time()
: <a class="el" href="classOpenMS_1_1LCElutionPeak.html#a00e30b5e53b81e2957fb095937eab517">LCElutionPeak</a>
</li>
<li>set_target_file()
: <a class="el" href="classOpenMS_1_1FTPeakDetectController.html#a499a6fd28e5d5ee4428696c29bfa4cf2">FTPeakDetectController</a>
</li>
<li>set_THEO_MASS_from_SQ()
: <a class="el" href="classOpenMS_1_1MS2Info.html#ac1792e7db8d1cbdede828f3908230e2f">MS2Info</a>
</li>
<li>set_XCORR()
: <a class="el" href="classOpenMS_1_1MS2Info.html#a800c4a99c0b902bec1d898e2fa46b7a2">MS2Info</a>
</li>
<li>setAAAfter()
: <a class="el" href="classOpenMS_1_1PeptideHit.html#a2f865e760a429c2648e2de2db7793fcb">PeptideHit</a>
</li>
<li>setAABefore()
: <a class="el" href="classOpenMS_1_1PeptideHit.html#aa50c3e3233976cef5c82cd6eed3f1768">PeptideHit</a>
</li>
<li>setAcceptableAbsolute()
: <a class="el" href="classOpenMS_1_1FuzzyStringComparator.html#ac7d8d2708716ac76e5607027e15ca7c2">FuzzyStringComparator</a>
</li>
<li>setAcceptableRelative()
: <a class="el" href="classOpenMS_1_1FuzzyStringComparator.html#a2532d11030e847190d6d314d1093ffb3">FuzzyStringComparator</a>
</li>
<li>setAccession()
: <a class="el" href="classOpenMS_1_1CVMappingTerm.html#aba1fff7a176ff80d53f932769e606980">CVMappingTerm</a>
, <a class="el" href="classOpenMS_1_1MzTabParameter.html#aba1fff7a176ff80d53f932769e606980">MzTabParameter</a>
, <a class="el" href="classOpenMS_1_1CVTerm.html#aba1fff7a176ff80d53f932769e606980">CVTerm</a>
, <a class="el" href="classOpenMS_1_1ProteinHit.html#aba1fff7a176ff80d53f932769e606980">ProteinHit</a>
</li>
<li>setAccessionAttribute()
: <a class="el" href="classOpenMS_1_1Internal_1_1SemanticValidator.html#ae3db5bfa0e54fe7a393eed4ebf5d8380">SemanticValidator</a>
</li>
<li>setAccuracy()
: <a class="el" href="classOpenMS_1_1MassAnalyzer.html#a48bdc5161d32fad1317ecc6d1a3fc974">MassAnalyzer</a>
</li>
<li>setAcquisitionInfo()
: <a class="el" href="classOpenMS_1_1ChromatogramSettings.html#ae173bdf1ee2cf333fded899217fda962">ChromatogramSettings</a>
, <a class="el" href="classOpenMS_1_1SpectrumSettings.html#ae173bdf1ee2cf333fded899217fda962">SpectrumSettings</a>
</li>
<li>setAcquisitionMode()
: <a class="el" href="classOpenMS_1_1IonDetector.html#a89af53dd08978920d0acde6115b8b485">IonDetector</a>
</li>
<li>setActionMode()
: <a class="el" href="classOpenMS_1_1TOPPASScene.html#ae8206575a83ddec02e83baf6dbe35fce">TOPPASScene</a>
</li>
<li>setActivationEnergy()
: <a class="el" href="classOpenMS_1_1Precursor.html#aa0f295be9951ca93357dc6ddb445d4e8">Precursor</a>
</li>
<li>setActivationMethods()
: <a class="el" href="classOpenMS_1_1Precursor.html#a39933573d918c2f912c27ff3120569d0">Precursor</a>
</li>
<li>setActive()
: <a class="el" href="classOpenMS_1_1ChargePair.html#a79d001de9b2e19392f7ab4ddcf807121">ChargePair</a>
, <a class="el" href="classOpenMS_1_1DataFilters.html#a778091b5ad43a531ec4862e26fbd1b8b">DataFilters</a>
</li>
<li>setADCSamplingFrequency()
: <a class="el" href="classOpenMS_1_1IonDetector.html#ab9933015a94bdd9827b4a417232b82f2">IonDetector</a>
</li>
<li>setAdditionalContextMenu()
: <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#a6edfc1efb063cec82b9e7fc5f2fb600f">SpectrumCanvas</a>
</li>
<li>setAddress()
: <a class="el" href="classOpenMS_1_1ContactPerson.html#a568cf6a3741135ab9dd386337592e696">ContactPerson</a>
</li>
<li>setAdductBase()
: <a class="el" href="classOpenMS_1_1MassExplainer.html#abf09a42c97c37db46bfe2b5f4c4c6651">MassExplainer</a>
</li>
<li>setAdductMass()
: <a class="el" href="classOpenMS_1_1AccurateMassSearchResult.html#a9f6c9308b72599897a2240b5adfd3695">AccurateMassSearchResult</a>
</li>
<li>setAffectedAminoAcids()
: <a class="el" href="classOpenMS_1_1Modification.html#a72a78e4bd735aef8c1c7ff48328880f9">Modification</a>
</li>
<li>setAllowChildren()
: <a class="el" href="classOpenMS_1_1CVMappingTerm.html#a8f46d4e996a8152da2148d1e978ffe6f">CVMappingTerm</a>
</li>
<li>setAllowedThreads()
: <a class="el" href="classOpenMS_1_1TOPPASScene.html#a5bda74573b0d1e6c4006febdae3dad61">TOPPASScene</a>
</li>
<li>setAllowShortNumbers()
: <a class="el" href="classOpenMS_1_1AxisWidget.html#a755794ab788e7771a998f845e1106d73">AxisWidget</a>
</li>
<li>setAmount()
: <a class="el" href="classOpenMS_1_1Adduct.html#a4bdde667878bb1df208824247a24a0d0">Adduct</a>
</li>
<li>setAnalysisSummaryQuantType()
: <a class="el" href="classOpenMS_1_1MSQuantifications.html#a92c8f8da0e9e1a197012e222f5ed0a0e">MSQuantifications</a>
</li>
<li>setAngels()
: <a class="el" href="classOpenMS_1_1Spectrum3DOpenGLCanvas.html#ac6660bfda45589a7cd11b69d497cd5e8">Spectrum3DOpenGLCanvas</a>
</li>
<li>setAtomicNumber()
: <a class="el" href="classOpenMS_1_1Element.html#aa644ea52ac9c7365c939cddc7eccfae3">Element</a>
</li>
<li>setAverageMass()
: <a class="el" href="classOpenMS_1_1ResidueModification.html#af638296b7bdf0f1c0e614914ef99325c">ResidueModification</a>
</li>
<li>setAverageWeight()
: <a class="el" href="classOpenMS_1_1Element.html#a649b36a63da95b175b2efbf90aa67771">Element</a>
, <a class="el" href="classOpenMS_1_1Residue.html#a649b36a63da95b175b2efbf90aa67771">Residue</a>
</li>
<li>setAxisBounds()
: <a class="el" href="classOpenMS_1_1AxisWidget.html#ab452eac494d1f7ec68be6cf22b102715">AxisWidget</a>
</li>
<li>setBackboneBasicityLeft()
: <a class="el" href="classOpenMS_1_1Residue.html#a52d4b8f0fe16fb024a5dc02e30f64e89">Residue</a>
</li>
<li>setBackboneBasicityRight()
: <a class="el" href="classOpenMS_1_1Residue.html#a22520e10fd0b198d093b4be936f784fe">Residue</a>
</li>
<li>setBackgroundNoiseLevel()
: <a class="el" href="classOpenMS_1_1SHFeature.html#af1508bd4107380b505c883f79fe43432">SHFeature</a>
</li>
<li>setBinning()
: <a class="el" href="classOpenMS_1_1BinnedSpectrum.html#afcf15ad8f75d3baeedc243d0ea406c31">BinnedSpectrum</a>
</li>
<li>setBinSize()
: <a class="el" href="classOpenMS_1_1BinnedSpectrum.html#a0edaba3a7366344a317bae16e18a8c8a">BinnedSpectrum</a>
</li>
<li>setBinSpread()
: <a class="el" href="classOpenMS_1_1BinnedSpectrum.html#ab5c2d555811c6b1f2827f20a3409afbe">BinnedSpectrum</a>
</li>
<li>setBlind()
: <a class="el" href="classOpenMS_1_1InspectInfile.html#a09fbe9da02d9f686dd39a000c313de1c">InspectInfile</a>
</li>
<li>setBoundary()
: <a class="el" href="classOpenMS_1_1MascotInfile.html#aa2d45a4df6be7ae8dcbf85637406336d">MascotInfile</a>
</li>
<li>setC13MassError()
: <a class="el" href="classOpenMS_1_1DeconvPeak.html#a7cc71feb47022602d77f823bb7077d20">DeconvPeak</a>
</li>
<li>setCalculatedMassToCharge()
: <a class="el" href="classOpenMS_1_1IdentificationHit.html#a0dee1319739c1f8ba3572a23cb2a6171">IdentificationHit</a>
</li>
<li>setCanvas_()
: <a class="el" href="classOpenMS_1_1SpectrumWidget.html#a4966ac1efb70e8c1fb00a17908974e8a">SpectrumWidget</a>
</li>
<li>setCentroidSD()
: <a class="el" href="classOpenMS_1_1MassTrace.html#a5be259c6596eb12bb1ccfe0c5fb1dd5e">MassTrace</a>
</li>
<li>setChanged()
: <a class="el" href="classOpenMS_1_1TOPPASScene.html#a4973165e2fb5a725c682121e3b93596d">TOPPASScene</a>
</li>
<li>setCharge()
: <a class="el" href="classOpenMS_1_1AccurateMassSearchResult.html#a37dd88dbefa909066433e26beeb92639">AccurateMassSearchResult</a>
, <a class="el" href="classOpenMS_1_1EmpiricalFormula.html#aecdd3d75aa9d0e0b350976294c5230aa">EmpiricalFormula</a>
, <a class="el" href="classOpenMS_1_1Adduct.html#a374f6284ec0fb91ce5b5870f73794d74">Adduct</a>
, <a class="el" href="classOpenMS_1_1ChargePair.html#aab61e8c40fae4222f8a59d315c474362">ChargePair</a>
, <a class="el" href="classOpenMS_1_1FeatureHypothesis.html#a2e3aaeb2229d767757e076d41147c085">FeatureHypothesis</a>
, <a class="el" href="classOpenMS_1_1BaseFeature.html#ab595724fe9b9eb5d37011f07d90b9e0b">BaseFeature</a>
, <a class="el" href="classOpenMS_1_1FeatureHandle.html#ae6715dde57f2d937bbf484839cd717ca">FeatureHandle</a>
, <a class="el" href="classOpenMS_1_1IdentificationHit.html#aca40a4630f5f8a0568899b74a62dcd4b">IdentificationHit</a>
, <a class="el" href="classOpenMS_1_1PeptideHit.html#aca40a4630f5f8a0568899b74a62dcd4b">PeptideHit</a>
, <a class="el" href="classOpenMS_1_1Precursor.html#aca40a4630f5f8a0568899b74a62dcd4b">Precursor</a>
, <a class="el" href="classOpenMS_1_1DeconvPeak.html#a2e8a5780496a480385ede6b61dad5092">DeconvPeak</a>
, <a class="el" href="classOpenMS_1_1OptimizePeakDeconvolution.html#ab7a0db6241792d8ce94f3426ad3666a1">OptimizePeakDeconvolution</a>
</li>
<li>setCharges()
: <a class="el" href="classOpenMS_1_1MascotInfile.html#a28fbc671d5cfb25709c44812d428945f">MascotInfile</a>
</li>
<li>setChargeState()
: <a class="el" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html#aa98f6d7f62328c34ff705d618d40a527">TraMLProduct</a>
, <a class="el" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#aa98f6d7f62328c34ff705d618d40a527">Peptide</a>
</li>
<li>setChecksum()
: <a class="el" href="classOpenMS_1_1SourceFile.html#affa32793fdd4f1526a6c34c17626a60a">SourceFile</a>
</li>
<li>setCheckTermValueTypes()
: <a class="el" href="classOpenMS_1_1Internal_1_1SemanticValidator.html#a8e0f7bd83dfc4aa15d9ef5418db4e6ab">SemanticValidator</a>
</li>
<li>setCheckUnits()
: <a class="el" href="classOpenMS_1_1Internal_1_1SemanticValidator.html#a3d8157bd35e04d3938c2f90ab1222d29">SemanticValidator</a>
</li>
<li>setChromatograms()
: <a class="el" href="classOpenMS_1_1MSExperiment.html#a4c105ad43f3c61a53997af8ba28720e2">MSExperiment&lt; PeakT, ChromatogramPeakT &gt;</a>
</li>
<li>setChromatogramType()
: <a class="el" href="classOpenMS_1_1ChromatogramSettings.html#aa30fe07d2b716420426f2c117a2e6866">ChromatogramSettings</a>
</li>
<li>setCleavage()
: <a class="el" href="classOpenMS_1_1MascotInfile.html#a61bb49149446d87f41eb4843406cbe40">MascotInfile</a>
</li>
<li>setClipboard()
: <a class="el" href="classOpenMS_1_1TOPPASScene.html#a79670baa994d9df95e18b96cbd570443">TOPPASScene</a>
</li>
<li>setColor()
: <a class="el" href="classOpenMS_1_1Annotation1DPeakItem.html#a858bbcf98637471449e438304a00624b">Annotation1DPeakItem</a>
, <a class="el" href="classOpenMS_1_1ColorSelector.html#af144719d4733c1899f3ccbe7144588a7">ColorSelector</a>
, <a class="el" href="classOpenMS_1_1TOPPASEdge.html#a858bbcf98637471449e438304a00624b">TOPPASEdge</a>
</li>
<li>setColumn()
: <a class="el" href="classOpenMS_1_1HPLC.html#ae2511fa18d76598fa696e1f552129904">HPLC</a>
</li>
<li>setColumnBounds()
: <a class="el" href="classOpenMS_1_1LPWrapper.html#a34555fcc801cc9ff93b35ed0ef29fb86">LPWrapper</a>
</li>
<li>setColumnName()
: <a class="el" href="classOpenMS_1_1LPWrapper.html#af2be6683b0d039dd00013cfe4997633c">LPWrapper</a>
</li>
<li>setColumnType()
: <a class="el" href="classOpenMS_1_1LPWrapper.html#a93480720f6d4378d9006b1428f1c88e1">LPWrapper</a>
</li>
<li>setCombinationsLogic()
: <a class="el" href="classOpenMS_1_1CVMappingRule.html#a7addd9faaa2aa5cfc6d8ddb30dfce2fd">CVMappingRule</a>
</li>
<li>setComment()
: <a class="el" href="classOpenMS_1_1ChromatogramSettings.html#a2116f9b1dde8ba3aef4a07e6f2a970a7">ChromatogramSettings</a>
, <a class="el" href="classOpenMS_1_1ExperimentalSettings.html#a2116f9b1dde8ba3aef4a07e6f2a970a7">ExperimentalSettings</a>
, <a class="el" href="classOpenMS_1_1HPLC.html#accef3b80d750b77f43276c8ea9ba4296">HPLC</a>
, <a class="el" href="classOpenMS_1_1Sample.html#a2116f9b1dde8ba3aef4a07e6f2a970a7">Sample</a>
, <a class="el" href="classOpenMS_1_1SampleTreatment.html#a2116f9b1dde8ba3aef4a07e6f2a970a7">SampleTreatment</a>
, <a class="el" href="classOpenMS_1_1SpectrumSettings.html#a2116f9b1dde8ba3aef4a07e6f2a970a7">SpectrumSettings</a>
</li>
<li>setCompletionTime()
: <a class="el" href="classOpenMS_1_1DataProcessing.html#a1429c5f03fd5bf24ca23b2666cd30422">DataProcessing</a>
</li>
<li>setCompomer()
: <a class="el" href="classOpenMS_1_1ChargePair.html#a42d8f64031443f999c335dd2ea039735">ChargePair</a>
</li>
<li>setCompoundRef()
: <a class="el" href="classOpenMS_1_1ReactionMonitoringTransition.html#a5af5acc9e670757bd144ed1ce8db8257">ReactionMonitoringTransition</a>
, <a class="el" href="classOpenMS_1_1IncludeExcludeTarget.html#a5af5acc9e670757bd144ed1ce8db8257">IncludeExcludeTarget</a>
</li>
<li>setCompounds()
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#a9c9daac17e5ba29289e7a63873a48d83">TargetedExperiment</a>
</li>
<li>setCompression()
: <a class="el" href="classOpenMS_1_1PeakFileOptions.html#a4f9574838da9bdf2454b9ff7750c5c86">PeakFileOptions</a>
</li>
<li>setConcentration()
: <a class="el" href="classOpenMS_1_1Sample.html#a201551552524e8f291dadb5f2b739d79">Sample</a>
</li>
<li>setConfigurations()
: <a class="el" href="classOpenMS_1_1IncludeExcludeTarget.html#ab3dc25d8cdc4031f494d271379f1689a">IncludeExcludeTarget</a>
</li>
<li>setConsensusMaps()
: <a class="el" href="classOpenMS_1_1MSQuantifications.html#ac89b38cb98cea796be1088c263974850">MSQuantifications</a>
</li>
<li>setContactInfo()
: <a class="el" href="classOpenMS_1_1ContactPerson.html#ad7d93df87f74de90e5d0870ebddfd6b5">ContactPerson</a>
</li>
<li>setContacts()
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#a060b9003b1614394d69ba2241641f837">TargetedExperiment</a>
, <a class="el" href="classOpenMS_1_1ExperimentalSettings.html#a42404b8b8267149022bdee58f46fc5ec">ExperimentalSettings</a>
</li>
<li>setConvexHulls()
: <a class="el" href="classOpenMS_1_1Feature.html#a8d65806c4f009695ab7bcf61eaf5546a">Feature</a>
</li>
<li>setCoverage()
: <a class="el" href="classOpenMS_1_1ProteinHit.html#a5284e70a62117a0460eac659275c7596">ProteinHit</a>
</li>
<li>setCreationDate()
: <a class="el" href="classOpenMS_1_1Identification.html#ad2fa048c5f4a968220c0e9b4d870e5c8">Identification</a>
</li>
<li>setCTerminalModification()
: <a class="el" href="classOpenMS_1_1AASequence.html#aee48f7ab64ffd613bc609a942abed665">AASequence</a>
</li>
<li>setCurrentId()
: <a class="el" href="classOpenMS_1_1EnhancedTabBar.html#a24b7087c58d55d928304e4b393a71fc1">EnhancedTabBar</a>
, <a class="el" href="classOpenMS_1_1TOPPASTabBar.html#a24b7087c58d55d928304e4b393a71fc1">TOPPASTabBar</a>
</li>
<li>setCurrentLayerParameters()
: <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#aa18ba1377e5bc34800a65947abaa5d9b">SpectrumCanvas</a>
</li>
<li>setCurrentLayerPeakPenStyle()
: <a class="el" href="classOpenMS_1_1Spectrum1DCanvas.html#a473cae13f0ed2590ccabca8459c9f927">Spectrum1DCanvas</a>
</li>
<li>setCurrentSpectrumIndex()
: <a class="el" href="classOpenMS_1_1LayerData.html#a3aa08df4ab42dd84a60e9d3d570b0d24">LayerData</a>
</li>
<li>setCustomizations()
: <a class="el" href="classOpenMS_1_1Instrument.html#a7a909b478cd08f72e5fb9dfac825cec1">Instrument</a>
</li>
<li>setCutOff()
: <a class="el" href="classOpenMS_1_1BaseModel.html#a464bd13b1e846ea0bc7bb0632f8e7256">BaseModel&lt; D &gt;</a>
</li>
<li>setCVIdentifierRef()
: <a class="el" href="classOpenMS_1_1CVMappingTerm.html#a73f2bd489b88769e77ec8c899f5afabd">CVMappingTerm</a>
, <a class="el" href="classOpenMS_1_1CVTerm.html#a73f2bd489b88769e77ec8c899f5afabd">CVTerm</a>
</li>
<li>setCVLabel()
: <a class="el" href="classOpenMS_1_1MzTabParameter.html#a79509e83405708adf0cbc9d9811197b2">MzTabParameter</a>
</li>
<li>setCVReferences()
: <a class="el" href="classOpenMS_1_1CVMappings.html#acacde75f71e94102f6665a23800c435d">CVMappings</a>
</li>
<li>setCVs()
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#a0ad8b10f573b8e96b163199e3636a9f9">TargetedExperiment</a>
</li>
<li>setCVTerms()
: <a class="el" href="classOpenMS_1_1CVMappingRule.html#a4067c54362d5870f3af7d6a8a9e83569">CVMappingRule</a>
, <a class="el" href="classOpenMS_1_1CVTermList.html#ad9531a5439e078e9db8f5b0237e1e425">CVTermList</a>
</li>
<li>setData()
: <a class="el" href="classOpenMS_1_1Math_1_1BilinearInterpolation.html#a4d84dfe3f295764d2c7389181bb34df0">BilinearInterpolation&lt; Key, Value &gt;</a>
, <a class="el" href="classOpenMS_1_1Math_1_1LinearInterpolation.html#a4d84dfe3f295764d2c7389181bb34df0">LinearInterpolation&lt; Key, Value &gt;</a>
, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html#a7e594645b8460e600602bb64a8403537">FeatureFinderAlgorithm&lt; PeakType, FeatureType &gt;</a>
</li>
<li>setDatabase()
: <a class="el" href="classOpenMS_1_1SequestInfile.html#acd919a266a56984b437f9957af67bb6e">SequestInfile</a>
</li>
<li>setDataPoints()
: <a class="el" href="classOpenMS_1_1TransformationDescription.html#a080a7748a0f5bd19412f8ceffbcc56c1">TransformationDescription</a>
</li>
<li>setDataProcessing()
: <a class="el" href="classOpenMS_1_1ConsensusMap.html#a8b8822043dbf3e8451ff65ce4403a0e5">ConsensusMap</a>
, <a class="el" href="classOpenMS_1_1FeatureMap.html#a8b8822043dbf3e8451ff65ce4403a0e5">FeatureMap&lt; FeatureT &gt;</a>
, <a class="el" href="classOpenMS_1_1ChromatogramSettings.html#a7694e9703fec55eec39614bd9ee25e8c">ChromatogramSettings</a>
, <a class="el" href="classOpenMS_1_1MetaInfoDescription.html#a7694e9703fec55eec39614bd9ee25e8c">MetaInfoDescription</a>
, <a class="el" href="classOpenMS_1_1SpectrumSettings.html#a7694e9703fec55eec39614bd9ee25e8c">SpectrumSettings</a>
</li>
<li>setDataProcessingList()
: <a class="el" href="classOpenMS_1_1MSQuantifications.html#a608f86754ff306be53a7ff177f405d58">MSQuantifications</a>
</li>
<li>setDate()
: <a class="el" href="classOpenMS_1_1DateTime.html#ab0ad7b4186bf82db087871dd002b136b">DateTime</a>
</li>
<li>setDateTime()
: <a class="el" href="classOpenMS_1_1ExperimentalSettings.html#ae0728c54c04bcc99a4c6ebfa961ed2c5">ExperimentalSettings</a>
, <a class="el" href="classOpenMS_1_1ProteinIdentification.html#ae0728c54c04bcc99a4c6ebfa961ed2c5">ProteinIdentification</a>
</li>
<li>setDb()
: <a class="el" href="classOpenMS_1_1InspectInfile.html#a0dfc7b9c9fd3444f5a9f26e248571918">InspectInfile</a>
</li>
<li>setDB()
: <a class="el" href="classOpenMS_1_1MascotInfile.html#acb62fd05639322ae085a033439a04c9b">MascotInfile</a>
</li>
<li>setDBSequenceRef()
: <a class="el" href="classOpenMS_1_1PeptideEvidence.html#a510cbea07cfe968b73ba1271d75b0b0d">PeptideEvidence</a>
</li>
<li>setDecoyTransitionType()
: <a class="el" href="classOpenMS_1_1ReactionMonitoringTransition.html#a472871a52e3f83c78d06eac7f0fb98ec">ReactionMonitoringTransition</a>
</li>
<li>setDefaultParametersFilename()
: <a class="el" href="classOpenMS_1_1XTandemInfile.html#a899c1cdd5fb97f45d48d8d2297e61949">XTandemInfile</a>
</li>
<li>setDefaultParams_()
: <a class="el" href="classOpenMS_1_1IsobaricChannelExtractor.html#a592956c92badca126cec3abd62da8d67">IsobaricChannelExtractor</a>
, <a class="el" href="classOpenMS_1_1IsobaricQuantifier.html#a592956c92badca126cec3abd62da8d67">IsobaricQuantifier</a>
, <a class="el" href="classOpenMS_1_1ItraqChannelExtractor.html#a592956c92badca126cec3abd62da8d67">ItraqChannelExtractor</a>
, <a class="el" href="classOpenMS_1_1ItraqEightPlexQuantitationMethod.html#a592956c92badca126cec3abd62da8d67">ItraqEightPlexQuantitationMethod</a>
, <a class="el" href="classOpenMS_1_1ItraqFourPlexQuantitationMethod.html#a592956c92badca126cec3abd62da8d67">ItraqFourPlexQuantitationMethod</a>
, <a class="el" href="classOpenMS_1_1ItraqQuantifier.html#a592956c92badca126cec3abd62da8d67">ItraqQuantifier</a>
, <a class="el" href="classOpenMS_1_1TMTSixPlexQuantitationMethod.html#a592956c92badca126cec3abd62da8d67">TMTSixPlexQuantitationMethod</a>
, <a class="el" href="classOpenMS_1_1DetectabilitySimulation.html#a592956c92badca126cec3abd62da8d67">DetectabilitySimulation</a>
, <a class="el" href="classOpenMS_1_1DigestSimulation.html#a592956c92badca126cec3abd62da8d67">DigestSimulation</a>
, <a class="el" href="classOpenMS_1_1IonizationSimulation.html#a592956c92badca126cec3abd62da8d67">IonizationSimulation</a>
, <a class="el" href="classOpenMS_1_1RawMSSignalSimulation.html#a592956c92badca126cec3abd62da8d67">RawMSSignalSimulation</a>
, <a class="el" href="classOpenMS_1_1RTSimulation.html#a592956c92badca126cec3abd62da8d67">RTSimulation</a>
</li>
<li>setDefaults()
: <a class="el" href="classOpenMS_1_1Param.html#a33b2b89b6c31ab6fcf1e0babae08bd18">Param</a>
</li>
<li>setDelayInSeconds()
: <a class="el" href="classOpenMS_1_1FileWatcher.html#aca16c228d1c7baaed6a2a5f43b2ebdd3">FileWatcher</a>
</li>
<li>setDescription()
: <a class="el" href="classOpenMS_1_1MetaInfoRegistry.html#ab644f0fecdfcea4be9ae61041c876a9f">MetaInfoRegistry</a>
, <a class="el" href="classOpenMS_1_1TOPPASScene.html#a34533344428c931301a5f1c41eb99721">TOPPASScene</a>
</li>
<li>setDFSColor()
: <a class="el" href="classOpenMS_1_1TOPPASVertex.html#a1636b46d3d2ee383a3dcea92a4c40ede">TOPPASVertex</a>
</li>
<li>setDFSParent()
: <a class="el" href="classOpenMS_1_1TOPPASVertex.html#ad322b37b72189da4004a7bd307dc6a0d">TOPPASVertex</a>
</li>
<li>setDiffAverageMass()
: <a class="el" href="classOpenMS_1_1ResidueModification.html#a99f0263524ea5bd83ebee86b29f3ed0e">ResidueModification</a>
</li>
<li>setDiffFormula()
: <a class="el" href="classOpenMS_1_1ResidueModification.html#a1e180f7d760189a28677f92ff1c78272">ResidueModification</a>
</li>
<li>setDiffMonoMass()
: <a class="el" href="classOpenMS_1_1ResidueModification.html#ad13f514052dc605da13b5ae8d3d1ef79">ResidueModification</a>
</li>
<li>setDigestionTime()
: <a class="el" href="classOpenMS_1_1Digestion.html#ab6f54418b51b95915a969b7672cf6a0e">Digestion</a>
</li>
<li>setDrawMode()
: <a class="el" href="classOpenMS_1_1Spectrum1DCanvas.html#ab4604a0ee18243a2b4f4c876369e968b">Spectrum1DCanvas</a>
</li>
<li>setDrawMode1D()
: <a class="el" href="classOpenMS_1_1TOPPViewBase.html#ad087632a8cbaa832a9750586ac9d75f8">TOPPViewBase</a>
</li>
<li>setEdgeScore()
: <a class="el" href="classOpenMS_1_1ChargePair.html#a7ee9dc293d1032dee03f7516f1c4ec22">ChargePair</a>
</li>
<li>setEditorData()
: <a class="el" href="classOpenMS_1_1Internal_1_1ListEditorDelegate.html#a035be68f93d5d35361312ea02b0fa5f8">ListEditorDelegate</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1ParamEditorDelegate.html#a035be68f93d5d35361312ea02b0fa5f8">ParamEditorDelegate</a>
</li>
<li>setElement()
: <a class="el" href="classOpenMS_1_1ims_1_1IMSAlphabet.html#a87ee61778bad20c8570c438bbd67604b">IMSAlphabet</a>
, <a class="el" href="classOpenMS_1_1LPWrapper.html#a3c68aac6af0abb9dbb658c5a96878952">LPWrapper</a>
</li>
<li>setElementIndex()
: <a class="el" href="classOpenMS_1_1ChargePair.html#ac155b6199bc1df3f745bc6e2b71c488e">ChargePair</a>
</li>
<li>setElementPath()
: <a class="el" href="classOpenMS_1_1CVMappingRule.html#a52cdac1ed5e697613bca19a2cf14b7cd">CVMappingRule</a>
</li>
<li>setElutionPeakExtraInfo()
: <a class="el" href="classOpenMS_1_1LCElutionPeak.html#ac81d671afeef6f8fb49a01556d7ca47c">LCElutionPeak</a>
</li>
<li>setEmail()
: <a class="el" href="classOpenMS_1_1ContactPerson.html#a74399439996aca9fc1c551081a556294">ContactPerson</a>
</li>
<li>setEmpiricalFormula()
: <a class="el" href="classOpenMS_1_1AccurateMassSearchResult.html#a90acb1345e22703cae098dcb7d3da776">AccurateMassSearchResult</a>
</li>
<li>setEnd()
: <a class="el" href="classOpenMS_1_1PeptideEvidence.html#a47c7a173a0cc7ab3934a6e5d057d95c6">PeptideEvidence</a>
</li>
<li>setEndPoint()
: <a class="el" href="classOpenMS_1_1Annotation1DDistanceItem.html#a28559f0c4425561912d78ab98fbf1ce8">Annotation1DDistanceItem</a>
</li>
<li>setEnzyme()
: <a class="el" href="classOpenMS_1_1EnzymaticDigestion.html#a52950aaa75317825a1a5e00f4250edee">EnzymaticDigestion</a>
, <a class="el" href="classOpenMS_1_1InspectInfile.html#a7a96f5fc556a0d3a830bc3be6aff43ba">InspectInfile</a>
, <a class="el" href="classOpenMS_1_1SequestInfile.html#a0de14c81af9abfa3229b0db7f9dd374a">SequestInfile</a>
, <a class="el" href="classOpenMS_1_1Digestion.html#a7a96f5fc556a0d3a830bc3be6aff43ba">Digestion</a>
</li>
<li>setErrorPPM()
: <a class="el" href="classOpenMS_1_1AccurateMassSearchResult.html#a45c2e21569988b68f61a79ecc6bacc9a">AccurateMassSearchResult</a>
</li>
<li>setExcludeTargets()
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#a31e125a0a351b7a9e6a31a27691800f4">TargetedExperiment</a>
</li>
<li>setExperimentalMassToCharge()
: <a class="el" href="classOpenMS_1_1IdentificationHit.html#ae99c196bff69ad37af6b00938198d723">IdentificationHit</a>
</li>
<li>setExperimentType()
: <a class="el" href="classOpenMS_1_1ConsensusMap.html#af3fc434b747ad4f686744aca8fe9ef84">ConsensusMap</a>
</li>
<li>setExtraPeakInfo()
: <a class="el" href="classOpenMS_1_1CentroidPeak.html#a5f2cda03b015772b6dc779a7bc8b3fed">CentroidPeak</a>
, <a class="el" href="classOpenMS_1_1MSPeak.html#a5f2cda03b015772b6dc779a7bc8b3fed">MSPeak</a>
</li>
<li>setFactor()
: <a class="el" href="classOpenMS_1_1SpectrumCheapDPCorr.html#a3020bdf9c2636db5c77ccf31bc54c3cf">SpectrumCheapDPCorr</a>
</li>
<li>setFastaFile()
: <a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html#a7d238aef71f460f8ebe0c267b7b7792b">EdwardsLippertIterator</a>
, <a class="el" href="classOpenMS_1_1PepIterator.html#ae4e709e523353cfb85943b8813fdef0f">PepIterator</a>
, <a class="el" href="classOpenMS_1_1TrypticIterator.html#a7d238aef71f460f8ebe0c267b7b7792b">TrypticIterator</a>
, <a class="el" href="classOpenMS_1_1FastaIterator.html#a7d238aef71f460f8ebe0c267b7b7792b">FastaIterator</a>
, <a class="el" href="classOpenMS_1_1FastaIteratorIntern.html#a7d238aef71f460f8ebe0c267b7b7792b">FastaIteratorIntern</a>
</li>
<li>setFeature()
: <a class="el" href="classOpenMS_1_1FeatureEditDialog.html#af1c9a47d07cba460cc307e41ba6f88e3">FeatureEditDialog</a>
</li>
<li>setFeatureExtraInformation()
: <a class="el" href="classOpenMS_1_1SHFeature.html#a8e7f45ed81c525f4071cf99f6c0dc51b">SHFeature</a>
</li>
<li>setFeatureLCMSID()
: <a class="el" href="classOpenMS_1_1LCMS.html#aa606fb7af8542febf36bfd27adc6ee74">LCMS</a>
</li>
<li>setFeatureProperties_()
: <a class="el" href="classOpenMS_1_1IonizationSimulation.html#a70d5c4ba2b711fab68d9b11df9b3723f">IonizationSimulation</a>
</li>
<li>setFile()
: <a class="el" href="classOpenMS_1_1Exception_1_1GlobalExceptionHandler.html#a84aea391357155b1ccc1a207b6fa69ea">GlobalExceptionHandler</a>
</li>
<li>setFileDescriptions()
: <a class="el" href="classOpenMS_1_1ConsensusMap.html#aa3516e447cd3c4ff4d1f2c90f828e9b2">ConsensusMap</a>
</li>
<li>setFileName()
: <a class="el" href="classOpenMS_1_1Internal_1_1ListEditorDelegate.html#a15871acff4d4368cc9e38ef0a1d2cb57">ListEditorDelegate</a>
</li>
<li>setFilenames()
: <a class="el" href="classOpenMS_1_1TOPPASInputFileListVertex.html#a6bf514d727f955dd7ddbbd2358b18013">TOPPASInputFileListVertex</a>
</li>
<li>setFileSize()
: <a class="el" href="classOpenMS_1_1SourceFile.html#abd1ddea1c593433ad2c04c560a5e94e6">SourceFile</a>
</li>
<li>setFileType()
: <a class="el" href="classOpenMS_1_1SourceFile.html#a2d47bfad02d5ce05dcfab38bc1b21400">SourceFile</a>
</li>
<li>setFilters()
: <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#a95e0b2ad525096b69be2d31b1bda5e0a">SpectrumCanvas</a>
</li>
<li>setFinalMSExponent()
: <a class="el" href="classOpenMS_1_1MassAnalyzer.html#a55f2fe6f72e20af53d3620f79386edac">MassAnalyzer</a>
</li>
<li>setFirstColumn()
: <a class="el" href="classOpenMS_1_1FuzzyStringComparator.html#a1f9d97034d87ede3b921e88f5ebf674d">FuzzyStringComparator</a>
</li>
<li>setFirstName()
: <a class="el" href="classOpenMS_1_1ContactPerson.html#a391c58adf84a5096f9fa9161fb985902">ContactPerson</a>
</li>
<li>setFittedIntensity()
: <a class="el" href="classOpenMS_1_1CentroidPeak.html#a77fde1ace55382caa8e80264700b007a">CentroidPeak</a>
</li>
<li>setFitterParam()
: <a class="el" href="classOpenMS_1_1EmgScoring.html#ad60792208a31598df5aed3dad7aff339">EmgScoring</a>
</li>
<li>setFixedModification()
: <a class="el" href="classOpenMS_1_1ModificationDefinition.html#a0e035600a59b5d5210937a2c636fb817">ModificationDefinition</a>
</li>
<li>setFixedModifications()
: <a class="el" href="classOpenMS_1_1PrecursorIonSelectionPreprocessing.html#ac6173f4fb679b149926e9dbf2aa7c472">PrecursorIonSelectionPreprocessing</a>
</li>
<li>setFlags()
: <a class="el" href="classOpenMS_1_1Annotation1DTextItem.html#a172cae7dd200e991bd3c9a7d26d9a69a">Annotation1DTextItem</a>
</li>
<li>setFlux()
: <a class="el" href="classOpenMS_1_1HPLC.html#acb5a115e051b514934ff94d09f61f408">HPLC</a>
</li>
<li>setFormula()
: <a class="el" href="classOpenMS_1_1Residue.html#af1983e2c45130b64655cefb11d34828b">Residue</a>
, <a class="el" href="classOpenMS_1_1ResidueModification.html#ab25aa1b01919a3648dcd44ca65cd8d65">ResidueModification</a>
, <a class="el" href="classOpenMS_1_1Adduct.html#acf5894e3bf7a7dba2781b4f28700b5e9">Adduct</a>
</li>
<li>setFormVersion()
: <a class="el" href="classOpenMS_1_1MascotInfile.html#ab5c8160eaa4d1af6a75ab172c9578423">MascotInfile</a>
</li>
<li>setFoundAdduct()
: <a class="el" href="classOpenMS_1_1AccurateMassSearchResult.html#a7bdd9626e41caa5ca14a5b2967933029">AccurateMassSearchResult</a>
</li>
<li>setFoundMass()
: <a class="el" href="classOpenMS_1_1AccurateMassSearchResult.html#ab00ee9b823a63c08e4601a2744a10868">AccurateMassSearchResult</a>
</li>
<li>setFractionIdentifier()
: <a class="el" href="classOpenMS_1_1ExperimentalSettings.html#a957d4a6b556cd9b0190f0a0780bc2720">ExperimentalSettings</a>
</li>
<li>setFragmentMassErrorUnit()
: <a class="el" href="classOpenMS_1_1XTandemInfile.html#a25c51e94f1d685ab18ec7fb8e75e62a2">XTandemInfile</a>
</li>
<li>setFragmentMassTolerance()
: <a class="el" href="classOpenMS_1_1XTandemInfile.html#ac9c3107ca3525083d603c8a47dfbee6e">XTandemInfile</a>
</li>
<li>setFragmentMz()
: <a class="el" href="classOpenMS_1_1MS2Fragment.html#a77c725f43226c4eb63a4921b2a7e9721">MS2Fragment</a>
</li>
<li>setFragmentPeakArea()
: <a class="el" href="classOpenMS_1_1MS2Fragment.html#a51f42ff1c23d4f6d2943ecf399cc0a32">MS2Fragment</a>
</li>
<li>setFrame()
: <a class="el" href="classOpenMS_1_1PeptideEvidence.html#afcca0ab266cc8b30f839584768b3082d">PeptideEvidence</a>
</li>
<li>setFullId()
: <a class="el" href="classOpenMS_1_1ResidueModification.html#a9606ed458b86cae43bbc1d27d295b332">ResidueModification</a>
</li>
<li>setFullName()
: <a class="el" href="classOpenMS_1_1ResidueModification.html#ae00f1179ac4d8f2260f7feb81b65c600">ResidueModification</a>
</li>
<li>setFunction()
: <a class="el" href="classOpenMS_1_1Exception_1_1GlobalExceptionHandler.html#a11d63dddfe061ce423fcc683c3f28373">GlobalExceptionHandler</a>
</li>
<li>setGaussianParameters()
: <a class="el" href="classOpenMS_1_1PrecursorIonSelectionPreprocessing.html#a0fa9e12d68da66d042d492ae0c54916a">PrecursorIonSelectionPreprocessing</a>
</li>
<li>setGradient()
: <a class="el" href="classOpenMS_1_1HPLC.html#ac538d5750dcdee4c8a0ddade6302526b">HPLC</a>
</li>
<li>setHidden()
: <a class="el" href="classOpenMS_1_1HMMState.html#ac36a6264460bf9bdea524f718d16da9a">HMMState</a>
</li>
<li>setHigherScoreBetter()
: <a class="el" href="classOpenMS_1_1PeptideIdentification.html#a98447dc4641b69db36fcc5087cfe73e6">PeptideIdentification</a>
, <a class="el" href="classOpenMS_1_1ProteinIdentification.html#a2b12b0259c1b9a843a11013ea4097899">ProteinIdentification</a>
</li>
<li>setHits()
: <a class="el" href="classOpenMS_1_1MascotInfile.html#af211fd9d71e29dddf2dd14ffcab6e01a">MascotInfile</a>
, <a class="el" href="classOpenMS_1_1PeptideIdentification.html#ab4d15b02dbc53727d0b6dae927ad6688">PeptideIdentification</a>
, <a class="el" href="classOpenMS_1_1ProteinIdentification.html#a86f5c6d7c17c3aa94ec734e2a4fb50fa">ProteinIdentification</a>
, <a class="el" href="classOpenMS_1_1SpectrumIdentification.html#a958a0f6a78bc66666d4e1e0fff2893c8">SpectrumIdentification</a>
</li>
<li>setHMM()
: <a class="el" href="classOpenMS_1_1PILISNeutralLossModel.html#ad48cac14b97f0cc77b3de37d2d07cee6">PILISNeutralLossModel</a>
</li>
<li>setHoverPos()
: <a class="el" href="classOpenMS_1_1TOPPASEdge.html#ab95a44a2b8c580aa643a3b1a258101d7">TOPPASEdge</a>
</li>
<li>setHPLC()
: <a class="el" href="classOpenMS_1_1ExperimentalSettings.html#a974ea481356edfc781dc082d34691037">ExperimentalSettings</a>
</li>
<li>setHullPoints()
: <a class="el" href="classOpenMS_1_1ConvexHull2D.html#a66469f20cdf9bda98df8e7dd611925a2">ConvexHull2D</a>
</li>
<li>setID()
: <a class="el" href="classOpenMS_1_1Compomer.html#ae01d717c5b7f47974e5ed0202a590c38">Compomer</a>
, <a class="el" href="classOpenMS_1_1MS2Feature.html#a28f33e86ba1f8657e7b5fc173da31b21">MS2Feature</a>
</li>
<li>setId()
: <a class="el" href="classOpenMS_1_1ResidueModification.html#aed7d57f45e478b9816da14ac4e53de48">ResidueModification</a>
, <a class="el" href="classOpenMS_1_1IdentificationHit.html#aed7d57f45e478b9816da14ac4e53de48">IdentificationHit</a>
, <a class="el" href="classOpenMS_1_1PeptideEvidence.html#aed7d57f45e478b9816da14ac4e53de48">PeptideEvidence</a>
</li>
<li>setIdentifier()
: <a class="el" href="classOpenMS_1_1CVMappingRule.html#a3ea2e9a83b6b409b673cac018f5099ab">CVMappingRule</a>
, <a class="el" href="classOpenMS_1_1CVReference.html#a3ea2e9a83b6b409b673cac018f5099ab">CVReference</a>
, <a class="el" href="classOpenMS_1_1Acquisition.html#a3ea2e9a83b6b409b673cac018f5099ab">Acquisition</a>
, <a class="el" href="classOpenMS_1_1DocumentIdentifier.html#a00f1456779f764c2738c35be2c04f6e8">DocumentIdentifier</a>
, <a class="el" href="classOpenMS_1_1PeptideIdentification.html#a00f1456779f764c2738c35be2c04f6e8">PeptideIdentification</a>
, <a class="el" href="classOpenMS_1_1ProteinIdentification.html#a00f1456779f764c2738c35be2c04f6e8">ProteinIdentification</a>
</li>
<li>setIncludeTargets()
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#a79c40f123e3c43068cf536ed2131b06f">TargetedExperiment</a>
</li>
<li>setIndividualIntensities()
: <a class="el" href="classOpenMS_1_1AccurateMassSearchResult.html#afd35a6d5f969c9acd8650208a34686f7">AccurateMassSearchResult</a>
</li>
<li>setInf()
: <a class="el" href="classOpenMS_1_1MzTabNullNaNAndInfAbleInterface.html#ab3bfbaa70526fc81f91b887b6c3b6659">MzTabNullNaNAndInfAbleInterface</a>
, <a class="el" href="classOpenMS_1_1MzTabNullNaNAndInfAbleBase.html#aa2a0cb4c13f8d09dce0ddc2fe70ddb31">MzTabNullNaNAndInfAbleBase</a>
</li>
<li>setInitialParameters()
: <a class="el" href="classOpenMS_1_1Math_1_1GammaDistributionFitter.html#a2ef96370e4cd534b36c9ee7eea99c157">GammaDistributionFitter</a>
, <a class="el" href="classOpenMS_1_1Math_1_1GaussFitter.html#a2fa6f13800a60296c8e5f4778a0a13e7">GaussFitter</a>
, <a class="el" href="classOpenMS_1_1Math_1_1GumbelDistributionFitter.html#af6232115eb2076fd8b59e06aff4b52f8">GumbelDistributionFitter</a>
</li>
<li>setInitialParameters_()
: <a class="el" href="classOpenMS_1_1EGHFitter1D.html#a3890c11404540c944778022c1e958a5f">EGHFitter1D</a>
, <a class="el" href="classOpenMS_1_1EGHTraceFitter.html#ab72ddfa388b35ef3e76649c7215047a3">EGHTraceFitter&lt; PeakType &gt;</a>
, <a class="el" href="classOpenMS_1_1EmgFitter1D.html#a3890c11404540c944778022c1e958a5f">EmgFitter1D</a>
, <a class="el" href="classOpenMS_1_1GaussTraceFitter.html#ab72ddfa388b35ef3e76649c7215047a3">GaussTraceFitter&lt; PeakType &gt;</a>
, <a class="el" href="classOpenMS_1_1LmaGaussFitter1D.html#a5f9b43178323893b28fd559cfb9660d4">LmaGaussFitter1D</a>
, <a class="el" href="classOpenMS_1_1LmaIsotopeFitter1D.html#a0c87b518ea77041edc01fadb9f78044e">LmaIsotopeFitter1D</a>
</li>
<li>setInitialTransitionProbability()
: <a class="el" href="classOpenMS_1_1HiddenMarkovModel.html#acacfd53fd8e7b2bdb436985d333c7d12">HiddenMarkovModel</a>
</li>
<li>setInitIsotopeDist()
: <a class="el" href="classOpenMS_1_1SuperHirnParameters.html#a5e231b8341d165e1689860a43ee9209b">SuperHirnParameters</a>
</li>
<li>setInletType()
: <a class="el" href="classOpenMS_1_1IonSource.html#a373113a64e05061b5d1ad3070180ebee">IonSource</a>
</li>
<li>setInputFilename()
: <a class="el" href="classOpenMS_1_1XTandemInfile.html#a77a8304837d74be1404ee00a485c6562">XTandemInfile</a>
</li>
<li>setInstitution()
: <a class="el" href="classOpenMS_1_1ContactPerson.html#ab884bb42e1849ac6bad45ae0cf1bb3a5">ContactPerson</a>
</li>
<li>setInstrument()
: <a class="el" href="classOpenMS_1_1InspectInfile.html#af8b07dd6f83ef3a71312df4ee11f64c0">InspectInfile</a>
, <a class="el" href="classOpenMS_1_1MascotInfile.html#af8b07dd6f83ef3a71312df4ee11f64c0">MascotInfile</a>
, <a class="el" href="classOpenMS_1_1ExperimentalSettings.html#a93504aa70c988cb638c0f0d413dc1aa2">ExperimentalSettings</a>
, <a class="el" href="classOpenMS_1_1HPLC.html#af8b07dd6f83ef3a71312df4ee11f64c0">HPLC</a>
</li>
<li>setInstruments()
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#add9f75cc55e97434d4ecae8621b8f9cf">TargetedExperiment</a>
</li>
<li>setInstrumentSettings()
: <a class="el" href="classOpenMS_1_1ChromatogramSettings.html#a4d6f80bde5859c412b221b0fc51114ba">ChromatogramSettings</a>
, <a class="el" href="classOpenMS_1_1SpectrumSettings.html#a4d6f80bde5859c412b221b0fc51114ba">SpectrumSettings</a>
</li>
<li>setIntensity()
: <a class="el" href="classOpenMS_1_1ChromatogramPeak.html#ab875c2479c6cd2a0189e4684bfa4f97d">ChromatogramPeak</a>
, <a class="el" href="classOpenMS_1_1Peak1D.html#ab875c2479c6cd2a0189e4684bfa4f97d">Peak1D</a>
, <a class="el" href="classOpenMS_1_1Peak2D.html#ab875c2479c6cd2a0189e4684bfa4f97d">Peak2D</a>
, <a class="el" href="classOpenMS_1_1CentroidPeak.html#afd3b8b2bb3cfe66276b0569643430ef6">CentroidPeak</a>
</li>
<li>setIntensity32Bit()
: <a class="el" href="classOpenMS_1_1PeakFileOptions.html#a7638323df7c8d5f6663d13b6112ca52b">PeakFileOptions</a>
</li>
<li>setIntensityArray()
: <a class="el" href="structOpenSwath_1_1Chromatogram.html#a0ded7b0a96059e265954c78cb13833f1">Chromatogram</a>
, <a class="el" href="structOpenSwath_1_1Spectrum.html#a0ded7b0a96059e265954c78cb13833f1">Spectrum</a>
, <a class="el" href="structOpenMS_1_1Interfaces_1_1Chromatogram.html#a0ded7b0a96059e265954c78cb13833f1">Chromatogram</a>
, <a class="el" href="structOpenMS_1_1Interfaces_1_1Spectrum.html#a0ded7b0a96059e265954c78cb13833f1">Spectrum</a>
</li>
<li>setIntensityMode()
: <a class="el" href="classOpenMS_1_1IDEvaluationBase.html#ad19debaef71096bfaa18c66739680180">IDEvaluationBase</a>
, <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a31716322f812328ebc5d2961d35d6370">TOPPViewBase</a>
, <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#a2adc4281093a3588bc64b1a1c3b98df9">SpectrumCanvas</a>
, <a class="el" href="classOpenMS_1_1SpectrumWidget.html#a299f4cc14174f43496827156f2c33e50">SpectrumWidget</a>
</li>
<li>setIntensityRange()
: <a class="el" href="classOpenMS_1_1FeatureFileOptions.html#ac569bc14cffc4b00baf3f025ef4f9381">FeatureFileOptions</a>
, <a class="el" href="classOpenMS_1_1PeakFileOptions.html#ac569bc14cffc4b00baf3f025ef4f9381">PeakFileOptions</a>
</li>
<li>setIntermediateProducts()
: <a class="el" href="classOpenMS_1_1ReactionMonitoringTransition.html#a0ff75dcaf5525c40307edefcbe4d4fc2">ReactionMonitoringTransition</a>
</li>
<li>setInterpolationMode()
: <a class="el" href="classOpenMS_1_1MultiGradient.html#af343779f5ce331e9fd873c5f61d4e45b">MultiGradient</a>
, <a class="el" href="classOpenMS_1_1MultiGradientSelector.html#a009a9a9b5094394fd099c8ba4fa29c20">MultiGradientSelector</a>
</li>
<li>setInterpolationStep()
: <a class="el" href="classOpenMS_1_1InterpolationModel.html#a8cb26c3ecdd2a5ddfbc97bf9ef3af165">InterpolationModel</a>
</li>
<li>setInterpretations()
: <a class="el" href="classOpenMS_1_1IncludeExcludeTarget.html#a5b41b883a4955ae6cb817b1599bf1606">IncludeExcludeTarget</a>
</li>
<li>setInvalid()
: <a class="el" href="classOpenMS_1_1QTCluster.html#a051bda95cf60584a1aa7aea3cb2d5215">QTCluster</a>
</li>
<li>setInverseOrientation()
: <a class="el" href="classOpenMS_1_1AxisWidget.html#afaa963370ed1796aa2eaa283b9d84a8a">AxisWidget</a>
</li>
<li>setIonCutoffPercentage()
: <a class="el" href="classOpenMS_1_1SequestInfile.html#aa28e85a8fcb426e4d20f4ee4382b4663">SequestInfile</a>
</li>
<li>setIonDetectors()
: <a class="el" href="classOpenMS_1_1Instrument.html#ac7c46e999565315338adc98e91b44aef">Instrument</a>
</li>
<li>setIonizationMethod()
: <a class="el" href="classOpenMS_1_1IonSource.html#a3188359ccfe5a3afff5d3bcbb0e26abb">IonSource</a>
</li>
<li>setIonOptics()
: <a class="el" href="classOpenMS_1_1Instrument.html#a79bd73586f964a65538404f5c7cd8aec">Instrument</a>
</li>
<li>setIonSeriesWeights()
: <a class="el" href="classOpenMS_1_1SequestInfile.html#a030ba56c33c71538ab6222c33949589e">SequestInfile</a>
</li>
<li>setIonSources()
: <a class="el" href="classOpenMS_1_1Instrument.html#a582115eb13c841a6e13813f17cff3a1e">Instrument</a>
</li>
<li>setIsDecoy()
: <a class="el" href="classOpenMS_1_1PeptideEvidence.html#aca3a5f12f912e5fa6408b20c223a9fd3">PeptideEvidence</a>
</li>
<li>setIsolationWidth()
: <a class="el" href="classOpenMS_1_1MassAnalyzer.html#a2e362a69ba721e7ea80a89c46a997af6">MassAnalyzer</a>
</li>
<li>setIsolationWindowLowerOffset()
: <a class="el" href="classOpenMS_1_1Precursor.html#a046066b9d4e7b06a0ce6b883346689f6">Precursor</a>
, <a class="el" href="classOpenMS_1_1Product.html#a046066b9d4e7b06a0ce6b883346689f6">Product</a>
</li>
<li>setIsolationWindowUpperOffset()
: <a class="el" href="classOpenMS_1_1Precursor.html#a3c61b885b58c7b8ed6c09913229342d3">Precursor</a>
, <a class="el" href="classOpenMS_1_1Product.html#a3c61b885b58c7b8ed6c09913229342d3">Product</a>
</li>
<li>setIsotopeDistribution()
: <a class="el" href="classOpenMS_1_1Element.html#af005f66c79814a28924d954f0150ec44">Element</a>
, <a class="el" href="classOpenMS_1_1ims_1_1IMSElement.html#a5670f97b5fcbebf0f2b0f8dbb2724cdb">IMSElement</a>
</li>
<li>setIsotopesSimScore()
: <a class="el" href="classOpenMS_1_1AccurateMassSearchResult.html#ac048311ecb8880e4f5b75a096de45841">AccurateMassSearchResult</a>
</li>
<li>setIsotopicPeaks()
: <a class="el" href="classOpenMS_1_1DeconvPeak.html#a0e2d068c031112a54fa1dfda452b1789">DeconvPeak</a>
</li>
<li>setIsotopIdx()
: <a class="el" href="classOpenMS_1_1CentroidPeak.html#ad5f35ec8f4e0695afef3fe478c0be1d6">CentroidPeak</a>
</li>
<li>setIsRepeatable()
: <a class="el" href="classOpenMS_1_1CVMappingTerm.html#a26bd0247e2d50041ec050caa53e0a5d1">CVMappingTerm</a>
</li>
<li>setKey()
: <a class="el" href="classOpenMS_1_1TOPPASInputFileListVertex.html#a995ae45d02d791cdbfe00f0dd33eb016">TOPPASInputFileListVertex</a>
</li>
<li>setLabel()
: <a class="el" href="classOpenMS_1_1MassTrace.html#a2026eb8716d1b717960eb10db4384d67">MassTrace</a>
, <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#aa9f0f149907e02e947cf0af5a4bc7836">SpectrumCanvas</a>
</li>
<li>setLastName()
: <a class="el" href="classOpenMS_1_1ContactPerson.html#ae5056c1e33cb9bbea429b446ef0d41a6">ContactPerson</a>
</li>
<li>setLayerFlag()
: <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#a8e82ec3d7f04fa2a23018eecd2a6cf98">SpectrumCanvas</a>
</li>
<li>setLayerName()
: <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#a0ede508a243e820611476516b01ce2aa">SpectrumCanvas</a>
</li>
<li>setLCelutionProfile()
: <a class="el" href="classOpenMS_1_1SHFeature.html#a0d40c16f871fcf62b34dcd20830e4e46">SHFeature</a>
</li>
<li>setLeftEndpoint()
: <a class="el" href="structOpenMS_1_1PeakShape.html#ad3e784fbfcd0e91cfea2a297f3599152">PeakShape</a>
</li>
<li>setLeftPaddingIndex()
: <a class="el" href="classOpenMS_1_1ContinuousWaveletTransform.html#af88b4f5ac43ac3006e682e89d0f2be3f">ContinuousWaveletTransform</a>
</li>
<li>setLeftSplitter()
: <a class="el" href="classOpenMS_1_1HistogramDialog.html#ae4de7771d1e20688a9cca89098c5a6cd">HistogramDialog</a>
, <a class="el" href="classOpenMS_1_1HistogramWidget.html#ac6c208db8f4540ddfabd41ced6a874dc">HistogramWidget</a>
</li>
<li>setLegend()
: <a class="el" href="classOpenMS_1_1AxisWidget.html#a9ee8e69aa61b5ba2e1f72a34c9256b15">AxisWidget</a>
, <a class="el" href="classOpenMS_1_1HistogramDialog.html#a9ee8e69aa61b5ba2e1f72a34c9256b15">HistogramDialog</a>
, <a class="el" href="classOpenMS_1_1HistogramWidget.html#a9ee8e69aa61b5ba2e1f72a34c9256b15">HistogramWidget</a>
</li>
<li>setLevel()
: <a class="el" href="classOpenMS_1_1Logger_1_1LogStreamBuf.html#aaefdf576666fce5063ca5e054ae4008f">LogStreamBuf</a>
, <a class="el" href="classOpenMS_1_1Logger_1_1LogStream.html#aaefdf576666fce5063ca5e054ae4008f">LogStream</a>
</li>
<li>setLibraryIntensity()
: <a class="el" href="classOpenMS_1_1ReactionMonitoringTransition.html#a3d8f0138119e3a6370b07b5b13644ff6">ReactionMonitoringTransition</a>
, <a class="el" href="structOpenSwath_1_1LightTransition.html#a11749da3908f610ac811bc1099616f08">LightTransition</a>
</li>
<li>setLine()
: <a class="el" href="classOpenMS_1_1Exception_1_1GlobalExceptionHandler.html#ac92869d06e3078144f44fef039954409">GlobalExceptionHandler</a>
</li>
<li>setList()
: <a class="el" href="classOpenMS_1_1ListEditor.html#a1bcefb2b92f855584d2e9d70ff03f700">ListEditor</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1ListTable.html#a1bcefb2b92f855584d2e9d70ff03f700">ListTable</a>
</li>
<li>setListRestrictions()
: <a class="el" href="classOpenMS_1_1ListEditor.html#a443c7913c8374c667a2a97334a9182d8">ListEditor</a>
</li>
<li>setLoadConvexHull()
: <a class="el" href="classOpenMS_1_1FeatureFileOptions.html#a54d9026658527cf27f2536726a59415c">FeatureFileOptions</a>
</li>
<li>setLoadedFilePath()
: <a class="el" href="classOpenMS_1_1DocumentIdentifier.html#a3b1a4ef7f451b9fdf97c46a128275c99">DocumentIdentifier</a>
</li>
<li>setLoadedFileType()
: <a class="el" href="classOpenMS_1_1DocumentIdentifier.html#aeb9181a2ee15dc517acea64e11ba8f6e">DocumentIdentifier</a>
</li>
<li>setLoadSubordinates()
: <a class="el" href="classOpenMS_1_1FeatureFileOptions.html#a70cd4130ab02eb727303f316da393c63">FeatureFileOptions</a>
</li>
<li>setLogDestination()
: <a class="el" href="classOpenMS_1_1FuzzyStringComparator.html#a76b7ba95e55066da94a25c66849e19df">FuzzyStringComparator</a>
</li>
<li>setLogMode()
: <a class="el" href="classOpenMS_1_1HistogramDialog.html#a76c877d31fc83d81e50631693fbdc125">HistogramDialog</a>
, <a class="el" href="classOpenMS_1_1HistogramWidget.html#a76c877d31fc83d81e50631693fbdc125">HistogramWidget</a>
</li>
<li>setLogModelEnabled()
: <a class="el" href="classOpenMS_1_1EnzymaticDigestion.html#ad405dd431aa99698dde78f5a0c6af361">EnzymaticDigestion</a>
</li>
<li>setLogProb()
: <a class="el" href="classOpenMS_1_1Adduct.html#a28bf7c6b12588b00bbc552b0a6a43cfc">Adduct</a>
</li>
<li>setLogScale()
: <a class="el" href="classOpenMS_1_1AxisWidget.html#a369d9b5b86a4067183b8c921eb1a6d39">AxisWidget</a>
</li>
<li>setLogThreshold()
: <a class="el" href="classOpenMS_1_1EnzymaticDigestion.html#a2cd035e01ac44d9b69646df81fbda686">EnzymaticDigestion</a>
</li>
<li>setLogType()
: <a class="el" href="classOpenMS_1_1ProgressLogger.html#acc3538c5284777d8702ccaefeb61e74c">ProgressLogger</a>
</li>
<li>setLossFormulas()
: <a class="el" href="classOpenMS_1_1Residue.html#af33949a89386abbec15f8145d80d4ee0">Residue</a>
</li>
<li>setLossNames()
: <a class="el" href="classOpenMS_1_1Residue.html#a69fc2e68d90f8f8a9df26be4a9c90d88">Residue</a>
</li>
<li>setLowMassIons()
: <a class="el" href="classOpenMS_1_1Residue.html#a84e1cc3ec0f1c7a702e03bcb4856e97f">Residue</a>
</li>
<li>setLPSolver()
: <a class="el" href="classOpenMS_1_1OfflinePrecursorIonSelection.html#a2b206fdbe8649b90b854129f37fc594a">OfflinePrecursorIonSelection</a>
, <a class="el" href="classOpenMS_1_1PrecursorIonSelection.html#a2b206fdbe8649b90b854129f37fc594a">PrecursorIonSelection</a>
, <a class="el" href="classOpenMS_1_1PSLPFormulation.html#a2b206fdbe8649b90b854129f37fc594a">PSLPFormulation</a>
</li>
<li>setMagneticFieldStrength()
: <a class="el" href="classOpenMS_1_1MassAnalyzer.html#a113d974e38726fb862cd6765a3e04e14">MassAnalyzer</a>
</li>
<li>setMapIndex()
: <a class="el" href="classOpenMS_1_1FeatureHandle.html#a51478ed07fbb537cb5be3422d1ae9eca">FeatureHandle</a>
</li>
<li>setMapping()
: <a class="el" href="classOpenMS_1_1Math_1_1LinearInterpolation.html#ad9571cf42bfba656d653f2746001dc44">LinearInterpolation&lt; Key, Value &gt;</a>
</li>
<li>setMapping_0()
: <a class="el" href="classOpenMS_1_1Math_1_1BilinearInterpolation.html#a750e8f2a6183ba3fbe0f3bf45686c180">BilinearInterpolation&lt; Key, Value &gt;</a>
</li>
<li>setMapping_1()
: <a class="el" href="classOpenMS_1_1Math_1_1BilinearInterpolation.html#a61b7e322c8120de86e8b30b6ead761b2">BilinearInterpolation&lt; Key, Value &gt;</a>
</li>
<li>setMappingRules()
: <a class="el" href="classOpenMS_1_1CVMappings.html#abbc705996ac48a3ba4531a5a54a147d4">CVMappings</a>
</li>
<li>setMargin()
: <a class="el" href="classOpenMS_1_1AxisWidget.html#a212487accd1084b2523557762aaa462b">AxisWidget</a>
</li>
<li>setMass()
: <a class="el" href="classOpenMS_1_1Modification.html#a984d3ffb17a84b059acea63b11177c92">Modification</a>
, <a class="el" href="classOpenMS_1_1Sample.html#a984d3ffb17a84b059acea63b11177c92">Sample</a>
, <a class="el" href="classOpenMS_1_1CentroidPeak.html#af4efd6256a503486aed908d7527ac576">CentroidPeak</a>
</li>
<li>setMassAnalyzers()
: <a class="el" href="classOpenMS_1_1Instrument.html#a5cd25111fa45967720350501a42cdc08">Instrument</a>
</li>
<li>setMassDiff()
: <a class="el" href="classOpenMS_1_1ChargePair.html#ad27d66d37b6a53e030582ab5e02cfe83">ChargePair</a>
</li>
<li>setMassShift()
: <a class="el" href="classOpenMS_1_1Tagging.html#a349a4787e9014618208247bd476cf8a0">Tagging</a>
</li>
<li>setMassType()
: <a class="el" href="classOpenMS_1_1MascotInfile.html#ac7f15709d8dce192c03a6c1506e0d61e">MascotInfile</a>
</li>
<li>setMassTypeFragment()
: <a class="el" href="classOpenMS_1_1SequestInfile.html#acf70fae131f3fe67f2535007f11a8e89">SequestInfile</a>
</li>
<li>setMassTypeParent()
: <a class="el" href="classOpenMS_1_1SequestInfile.html#a77373bd05524a6634be6369f991caeae">SequestInfile</a>
</li>
<li>setMatchingHMDBids()
: <a class="el" href="classOpenMS_1_1AccurateMassSearchResult.html#adf733c1b8a7d75d206fd480b5f527195">AccurateMassSearchResult</a>
</li>
<li>setMatchingIndex()
: <a class="el" href="classOpenMS_1_1AccurateMassSearchResult.html#ac3d4f936c2b005385620c9b24c1bc80a">AccurateMassSearchResult</a>
</li>
<li>setMatchPeakAllowedError()
: <a class="el" href="classOpenMS_1_1SequestInfile.html#a10b61c243561b02364b136d29a173037">SequestInfile</a>
</li>
<li>setMatchPeakCount()
: <a class="el" href="classOpenMS_1_1SequestInfile.html#a7eac0b1e3667e81480f9981d03d463cc">SequestInfile</a>
</li>
<li>setMatchPeakTolerance()
: <a class="el" href="classOpenMS_1_1SequestInfile.html#a9988a72aa8c2ca1131ef807007e74a0f">SequestInfile</a>
</li>
<li>setMatrix()
: <a class="el" href="classOpenMS_1_1Matrix.html#af0e8f32e17cc9ac00d311155d98fb4f0">Matrix&lt; Value &gt;</a>
</li>
<li>setMax()
: <a class="el" href="classOpenMS_1_1Internal_1_1DIntervalBase.html#a7a36d0e0f19766fde3d94e90bc64a6d7">DIntervalBase&lt; D &gt;</a>
</li>
<li>setMaxAAPerModPerPeptide()
: <a class="el" href="classOpenMS_1_1SequestInfile.html#a1301d4270f2bac02694fc7da66076f52">SequestInfile</a>
</li>
<li>setMaxAbsError()
: <a class="el" href="classOpenMS_1_1OptimizePick.html#a9d6ce3c6884623b4bcf7acf1fc3f212f">OptimizePick</a>
, <a class="el" href="classOpenMS_1_1TwoDOptimization.html#a850156405bdec2d3a4761d49310151e7">TwoDOptimization</a>
</li>
<li>setMaxCharge()
: <a class="el" href="classOpenMS_1_1IsotopeWavelet.html#aa18cf670f680c9c2eb6930d640e65b22">IsotopeWavelet</a>
</li>
<li>setMaxFloat()
: <a class="el" href="classOpenMS_1_1Param.html#a6b40506fffbae670045d065c354bb9b8">Param</a>
</li>
<li>setMaxFloat_()
: <a class="el" href="classOpenMS_1_1TOPPBase.html#adf95da344ba3f752eba15df253cecdde">TOPPBase</a>
</li>
<li>setMaxInt()
: <a class="el" href="classOpenMS_1_1Param.html#a37de948351467fdccb9d12f601dc8205">Param</a>
</li>
<li>setMaxInt_()
: <a class="el" href="classOpenMS_1_1TOPPBase.html#a605edef60e83ec4fac8e06b9d8c2456b">TOPPBase</a>
</li>
<li>setMaxInternalCleavageSites()
: <a class="el" href="classOpenMS_1_1SequestInfile.html#aff301c54c7c3afcddb7bc8302992300f">SequestInfile</a>
</li>
<li>setMaxIsotope()
: <a class="el" href="classOpenMS_1_1IsotopeDistribution.html#a261a831dc055b354545a8c0e48f57cad">IsotopeDistribution</a>
</li>
<li>setMaxIterations()
: <a class="el" href="classOpenMS_1_1TwoDOptimization.html#ae11715606af5b9d6d8426dd7f6c783af">TwoDOptimization</a>
</li>
<li>setMaxModifications()
: <a class="el" href="classOpenMS_1_1ModificationDefinitionsSet.html#af847fe563e9d803062388ab6f2012e80">ModificationDefinitionsSet</a>
</li>
<li>setMaxModsPerPeptide()
: <a class="el" href="classOpenMS_1_1SequestInfile.html#a2edbd54b1fbbf625acca59fb21b498cb">SequestInfile</a>
</li>
<li>setMaxNumberOfThreads()
: <a class="el" href="classOpenMS_1_1TOPPBase.html#abb40d991085e7c611f6c96de6c45ddb9">TOPPBase</a>
</li>
<li>setMaxOccurences()
: <a class="el" href="classOpenMS_1_1ModificationDefinition.html#aa135a0bb999a66c0af0b62e7a4144646">ModificationDefinition</a>
</li>
<li>setMaxPeakDistance()
: <a class="el" href="classOpenMS_1_1TwoDOptimization.html#afe966e2a453a2c21000f38f431bc6205">TwoDOptimization</a>
</li>
<li>setMaxPrecursorCharge()
: <a class="el" href="classOpenMS_1_1XTandemInfile.html#ad003ac11d122e789783fe60ff94fb4d0">XTandemInfile</a>
</li>
<li>setMaxPTMsize()
: <a class="el" href="classOpenMS_1_1InspectInfile.html#a48e71e20a96d748bcd7c58ac4c834a37">InspectInfile</a>
</li>
<li>setMaxRelError()
: <a class="el" href="classOpenMS_1_1OptimizePick.html#a6d72f377d140f4725e7abf59e64f933f">OptimizePick</a>
, <a class="el" href="classOpenMS_1_1TwoDOptimization.html#a6ed5164a8b4af4b3de8e04912350acfb">TwoDOptimization</a>
</li>
<li>setMaxScanDistance()
: <a class="el" href="classOpenMS_1_1ProcessData.html#a70c1d8bfb156a0354f54cbc00b26d0cc">ProcessData</a>
</li>
<li>setMaxScore()
: <a class="el" href="classOpenMS_1_1PrecursorIonSelection.html#ad3a5be860a268a2fa37776730d91fbc9">PrecursorIonSelection</a>
</li>
<li>setMaxValidEValue()
: <a class="el" href="classOpenMS_1_1XTandemInfile.html#a7c3a6e6e73ebcadc3af451f584e84273">XTandemInfile</a>
</li>
<li>setMaxX()
: <a class="el" href="classOpenMS_1_1Internal_1_1DIntervalBase.html#adcf69cae2f91d868b8defd2b12aad4ed">DIntervalBase&lt; D &gt;</a>
</li>
<li>setMaxY()
: <a class="el" href="classOpenMS_1_1Internal_1_1DIntervalBase.html#a71b4e57973d9ad60975b774f4eeaef06">DIntervalBase&lt; D &gt;</a>
</li>
<li>setMean()
: <a class="el" href="classOpenMS_1_1Math_1_1BasicStatistics.html#a3a7497c0608b1eab921b7779ab17d76f">BasicStatistics&lt; RealT &gt;</a>
</li>
<li>setMergeLayers()
: <a class="el" href="classOpenMS_1_1TOPPViewOpenDialog.html#a46b4cf9c8221bba482542b01554df552">TOPPViewOpenDialog</a>
</li>
<li>setMessage()
: <a class="el" href="classOpenMS_1_1Exception_1_1BaseException.html#ab424860b1bbb6f956115cf775444f21b">BaseException</a>
, <a class="el" href="classOpenMS_1_1Exception_1_1GlobalExceptionHandler.html#ac351f48d2668c8df16d673b044ff997c">GlobalExceptionHandler</a>
</li>
<li>setMetaData()
: <a class="el" href="classOpenMS_1_1MzTab.html#a8f9e60af7b9c32350a9219e8b6d60d0f">MzTab</a>
</li>
<li>setMetadataOnly()
: <a class="el" href="classOpenMS_1_1FeatureFileOptions.html#ac2a418c9e8f9df02e2d4b1c56da6a2a4">FeatureFileOptions</a>
, <a class="el" href="classOpenMS_1_1PeakFileOptions.html#ac2a418c9e8f9df02e2d4b1c56da6a2a4">PeakFileOptions</a>
</li>
<li>setMetaValue()
: <a class="el" href="classOpenMS_1_1MetaInfoInterface.html#a135a7e818125b31198a8a65d9ac7a3d1">MetaInfoInterface</a>
</li>
<li>setMethodOfCombination()
: <a class="el" href="classOpenMS_1_1AcquisitionInfo.html#a2ba2b43016c198589d743be93ff19072">AcquisitionInfo</a>
</li>
<li>setMin()
: <a class="el" href="classOpenMS_1_1Internal_1_1DIntervalBase.html#a4fffeb727a4aa87504d4004c1e79768f">DIntervalBase&lt; D &gt;</a>
</li>
<li>setMinFloat()
: <a class="el" href="classOpenMS_1_1Param.html#aadc7a8536eb15f8c6fa05eefca0e25be">Param</a>
</li>
<li>setMinFloat_()
: <a class="el" href="classOpenMS_1_1TOPPBase.html#a0c572075f31eb74105e0c6208b4aea53">TOPPBase</a>
</li>
<li>setMinimumSize_()
: <a class="el" href="classOpenMS_1_1ims_1_1IMSIsotopeDistribution.html#a16ff3bd59d29fd3f3ffe769af9c01866">IMSIsotopeDistribution</a>
</li>
<li>setMinInt()
: <a class="el" href="classOpenMS_1_1Param.html#a3a23089ec40eeed796efe7b69ecb02ac">Param</a>
</li>
<li>setMinInt_()
: <a class="el" href="classOpenMS_1_1TOPPBase.html#a50e2ac598a7f0508f871f64082b33422">TOPPBase</a>
</li>
<li>setMinMax()
: <a class="el" href="classOpenMS_1_1Internal_1_1DIntervalBase.html#a771b0a3f028d904373f09620fca26a39">DIntervalBase&lt; D &gt;</a>
</li>
<li>setMinPeakGroupSize()
: <a class="el" href="classOpenMS_1_1Deisotoper.html#a31777265ec1773b4ae8daccee4a5fc23">Deisotoper</a>
</li>
<li>setMinX()
: <a class="el" href="classOpenMS_1_1Internal_1_1DIntervalBase.html#a9f4dd5aa564dcc541a0d5a271e22e6a0">DIntervalBase&lt; D &gt;</a>
</li>
<li>setMinY()
: <a class="el" href="classOpenMS_1_1Internal_1_1DIntervalBase.html#a3faa28974e310e9743446f1c184496a6">DIntervalBase&lt; D &gt;</a>
</li>
<li>setMirrorModeActive()
: <a class="el" href="classOpenMS_1_1Spectrum1DCanvas.html#a4cffa85832c49fbaa8bab894ffb9d16b">Spectrum1DCanvas</a>
</li>
<li>setMissedCleavages()
: <a class="el" href="classOpenMS_1_1EnzymaticDigestion.html#a05d552a7a0f493692cb48aea619365d9">EnzymaticDigestion</a>
, <a class="el" href="classOpenMS_1_1MascotInfile.html#a23e727498e6d7c8db7f767ed52b7574f">MascotInfile</a>
, <a class="el" href="classOpenMS_1_1PeptideEvidence.html#aaaedb7516badc41319fae9e0ebe4c8aa">PeptideEvidence</a>
</li>
<li>setML1s()
: <a class="el" href="classOpenMS_1_1TOFCalibration.html#a0644c7abe6d741e392f342d3cad4f13b">TOFCalibration</a>
</li>
<li>setML2s()
: <a class="el" href="classOpenMS_1_1TOFCalibration.html#acac26548047519fe9df8666c56376c4a">TOFCalibration</a>
</li>
<li>setML3s()
: <a class="el" href="classOpenMS_1_1TOFCalibration.html#ab4f0d85b11b0736a60b934dbc7f1b2a4">TOFCalibration</a>
</li>
<li>setModel()
: <a class="el" href="classOpenMS_1_1PILISIdentification.html#a7bc90d59b0d631da48ab443f8faca9c3">PILISIdentification</a>
, <a class="el" href="classOpenMS_1_1Instrument.html#ab8f1a70c86c25fdc807045303471d72a">Instrument</a>
, <a class="el" href="classOpenMS_1_1ProductModel_3_012_01_4.html#a8cd14764d47842020930ef7023a2d912">ProductModel&lt; 2 &gt;</a>
</li>
<li>setModelData()
: <a class="el" href="classOpenMS_1_1Internal_1_1ListEditorDelegate.html#ab112f45188df1d8fb229db7222aceccc">ListEditorDelegate</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1ParamEditorDelegate.html#ab112f45188df1d8fb229db7222aceccc">ParamEditorDelegate</a>
</li>
<li>setModelDescription()
: <a class="el" href="classOpenMS_1_1Feature.html#a59f31f35e2e4a45316651cebbb358a1d">Feature</a>
</li>
<li>setModification()
: <a class="el" href="classOpenMS_1_1AASequence.html#a3a77e574f42bcdb282c1df6a82a6cc5c">AASequence</a>
, <a class="el" href="classOpenMS_1_1ModificationDefinition.html#afa164d8a9ef2d41391cee4f7940297f1">ModificationDefinition</a>
, <a class="el" href="classOpenMS_1_1Residue.html#a6de12d26aed935917c98c6e33f290cb1">Residue</a>
</li>
<li>setModificationDefinitionsSet()
: <a class="el" href="classOpenMS_1_1OMSSAXMLFile.html#abd685262ded56d2cf23a452b4f61e1b4">OMSSAXMLFile</a>
, <a class="el" href="classOpenMS_1_1XTandemXMLFile.html#abd685262ded56d2cf23a452b4f61e1b4">XTandemXMLFile</a>
</li>
<li>setModificationOutputMethod()
: <a class="el" href="classOpenMS_1_1SuffixArrayPeptideFinder.html#ab4636faec99f9a1d895e440b69b54a91">SuffixArrayPeptideFinder</a>
</li>
<li>setModifications()
: <a class="el" href="classOpenMS_1_1ModificationDefinitionsSet.html#a5415d6e5d9477b9cb9b72f11fcaa8a8d">ModificationDefinitionsSet</a>
, <a class="el" href="classOpenMS_1_1MascotInfile.html#a1f863eff64a2a39a270ed421291cdc4c">MascotInfile</a>
, <a class="el" href="classOpenMS_1_1PepNovoInfile.html#a55368814c05cafb6718ee3a7e76402f8">PepNovoInfile</a>
, <a class="el" href="classOpenMS_1_1XTandemInfile.html#ac395f03da1374da4f08babc06d6d4aa0">XTandemInfile</a>
</li>
<li>setModificationsPerPeptide()
: <a class="el" href="classOpenMS_1_1InspectInfile.html#ae48722b94726459383aa274f654adc29">InspectInfile</a>
</li>
<li>setModified()
: <a class="el" href="classOpenMS_1_1ParamEditor.html#a8821b0e1dfc47cd5b971dd3411a9fe03">ParamEditor</a>
</li>
<li>setModOrSubstIdentifier()
: <a class="el" href="structOpenMS_1_1MzTabModification.html#a1a803b9b996569378538286c6241eefc">MzTabModification</a>
</li>
<li>setMonoIsotopicMass()
: <a class="el" href="classOpenMS_1_1ModelFitter.html#a4aeb5297e8e231a3cc8e6a4f599944b5">ModelFitter&lt; PeakType, FeatureType &gt;</a>
</li>
<li>setMonoMass()
: <a class="el" href="classOpenMS_1_1ResidueModification.html#ad4ee98b85cda36af64247652fe806838">ResidueModification</a>
</li>
<li>setMonoWeight()
: <a class="el" href="classOpenMS_1_1Element.html#a7abc27cbca4700f22fba3ed97405fc19">Element</a>
, <a class="el" href="classOpenMS_1_1Residue.html#a7abc27cbca4700f22fba3ed97405fc19">Residue</a>
</li>
<li>setMSFile()
: <a class="el" href="classOpenMS_1_1MzTabSpectraRef.html#a0352273372a6134a5890d49ec9874250">MzTabSpectraRef</a>
</li>
<li>setMSLevel()
: <a class="el" href="classOpenMS_1_1MSSpectrum.html#a24f081fe74bbbf773533ad19e96d8358">MSSpectrum&lt; PeakT &gt;</a>
</li>
<li>setMSLevels()
: <a class="el" href="classOpenMS_1_1PeakFileOptions.html#a73fc99922b124b94fb60534da6e1c2ed">PeakFileOptions</a>
</li>
<li>setMulticharge()
: <a class="el" href="classOpenMS_1_1InspectInfile.html#a9570857efbc4b650d9d8ce6517c5915a">InspectInfile</a>
</li>
<li>setMZ()
: <a class="el" href="classOpenMS_1_1ChromatogramPeak.html#a934b8887c5f2be07cd8bb6f4e0834513">ChromatogramPeak</a>
, <a class="el" href="classOpenMS_1_1Peak1D.html#ab9c4ce5d172a75d6de2c6f5f1847c9ab">Peak1D</a>
, <a class="el" href="classOpenMS_1_1Peak2D.html#a2694f0775c46d9076355cb85d9815425">Peak2D</a>
, <a class="el" href="classOpenMS_1_1Product.html#a94893c6a36a1281bfd8ff45c0199bd35">Product</a>
</li>
<li>setMz32Bit()
: <a class="el" href="classOpenMS_1_1PeakFileOptions.html#a7f3c43faaea454a505cb3eeba9e0a150">PeakFileOptions</a>
</li>
<li>setMZArray()
: <a class="el" href="structOpenSwath_1_1Spectrum.html#acc98c941271b04e0bfb9b8cc459e15ed">Spectrum</a>
</li>
<li>setMZRange()
: <a class="el" href="classOpenMS_1_1FeatureFileOptions.html#ad4514ab0bdd6584dc544cabd7d461553">FeatureFileOptions</a>
, <a class="el" href="classOpenMS_1_1PeakFileOptions.html#ad4514ab0bdd6584dc544cabd7d461553">PeakFileOptions</a>
</li>
<li>setMZTolerance()
: <a class="el" href="classOpenMS_1_1TwoDOptimization.html#aef02420ae0f171972e40c069ec5931be">TwoDOptimization</a>
</li>
<li>setName()
: <a class="el" href="classOpenMS_1_1HMMState.html#a77d37f2e1c12e8bd33ea0e660a89e927">HMMState</a>
, <a class="el" href="classOpenMS_1_1ReactionMonitoringTransition.html#a77d37f2e1c12e8bd33ea0e660a89e927">ReactionMonitoringTransition</a>
, <a class="el" href="classOpenMS_1_1IncludeExcludeTarget.html#a77d37f2e1c12e8bd33ea0e660a89e927">IncludeExcludeTarget</a>
, <a class="el" href="classOpenMS_1_1Element.html#a77d37f2e1c12e8bd33ea0e660a89e927">Element</a>
, <a class="el" href="classOpenMS_1_1ims_1_1IMSElement.html#a1f35512ce318c3f95f80271d07ab499e">IMSElement</a>
, <a class="el" href="classOpenMS_1_1Residue.html#a77d37f2e1c12e8bd33ea0e660a89e927">Residue</a>
, <a class="el" href="classOpenMS_1_1ResidueModification.html#a77d37f2e1c12e8bd33ea0e660a89e927">ResidueModification</a>
, <a class="el" href="classOpenMS_1_1Exception_1_1GlobalExceptionHandler.html#a1698e852056c06cf51935a6e19679995">GlobalExceptionHandler</a>
, <a class="el" href="classOpenMS_1_1CVReference.html#a77d37f2e1c12e8bd33ea0e660a89e927">CVReference</a>
, <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#a77d37f2e1c12e8bd33ea0e660a89e927">DefaultParamHandler</a>
, <a class="el" href="classOpenMS_1_1MzTabParameter.html#a77d37f2e1c12e8bd33ea0e660a89e927">MzTabParameter</a>
, <a class="el" href="classOpenMS_1_1MSChromatogram.html#a77d37f2e1c12e8bd33ea0e660a89e927">MSChromatogram&lt; PeakT &gt;</a>
, <a class="el" href="classOpenMS_1_1MSSpectrum.html#a77d37f2e1c12e8bd33ea0e660a89e927">MSSpectrum&lt; PeakT &gt;</a>
, <a class="el" href="classOpenMS_1_1ContactPerson.html#a77d37f2e1c12e8bd33ea0e660a89e927">ContactPerson</a>
, <a class="el" href="classOpenMS_1_1CVTerm.html#a77d37f2e1c12e8bd33ea0e660a89e927">CVTerm</a>
, <a class="el" href="classOpenMS_1_1IdentificationHit.html#a77d37f2e1c12e8bd33ea0e660a89e927">IdentificationHit</a>
, <a class="el" href="classOpenMS_1_1Instrument.html#a77d37f2e1c12e8bd33ea0e660a89e927">Instrument</a>
, <a class="el" href="classOpenMS_1_1MetaInfoDescription.html#a77d37f2e1c12e8bd33ea0e660a89e927">MetaInfoDescription</a>
, <a class="el" href="classOpenMS_1_1PeptideEvidence.html#a77d37f2e1c12e8bd33ea0e660a89e927">PeptideEvidence</a>
, <a class="el" href="classOpenMS_1_1Sample.html#a77d37f2e1c12e8bd33ea0e660a89e927">Sample</a>
, <a class="el" href="classOpenMS_1_1Software.html#a77d37f2e1c12e8bd33ea0e660a89e927">Software</a>
, <a class="el" href="classOpenMS_1_1ModelDescription.html#a77d37f2e1c12e8bd33ea0e660a89e927">ModelDescription&lt; D &gt;</a>
</li>
<li>setNameAttribute()
: <a class="el" href="classOpenMS_1_1Internal_1_1SemanticValidator.html#aedd15a9d422fbdda8353d325080f6937">SemanticValidator</a>
</li>
<li>setNameOfFile()
: <a class="el" href="classOpenMS_1_1SourceFile.html#af0a7eddbacf20c4f4045b671df6b0fe7">SourceFile</a>
</li>
<li>setNaN()
: <a class="el" href="classOpenMS_1_1MzTabNullNaNAndInfAbleInterface.html#a9419b7d94110194cc8e7fbc91807e070">MzTabNullNaNAndInfAbleInterface</a>
, <a class="el" href="classOpenMS_1_1MzTabNullNaNAndInfAbleBase.html#a17b6b85d12b980f8617fa4cecc1fb6be">MzTabNullNaNAndInfAbleBase</a>
</li>
<li>setNativeID()
: <a class="el" href="classOpenMS_1_1ReactionMonitoringTransition.html#a7393f647986f90539c97439f24f25924">ReactionMonitoringTransition</a>
, <a class="el" href="classOpenMS_1_1ChromatogramSettings.html#afa370200c7cf12d530364dec51830515">ChromatogramSettings</a>
, <a class="el" href="classOpenMS_1_1SpectrumSettings.html#afa370200c7cf12d530364dec51830515">SpectrumSettings</a>
</li>
<li>setNativeIDType()
: <a class="el" href="classOpenMS_1_1SourceFile.html#aebbcbc0921830875bea3d15dc062d12c">SourceFile</a>
</li>
<li>setNeutralLossAverageMass()
: <a class="el" href="classOpenMS_1_1ResidueModification.html#a745ed0c0856230fb2b6f5aeb41de8c61">ResidueModification</a>
</li>
<li>setNeutralLossDiffFormula()
: <a class="el" href="classOpenMS_1_1ResidueModification.html#aaf603859f89004bcfa00dfb0e1583d3b">ResidueModification</a>
</li>
<li>setNeutralLossesForIons()
: <a class="el" href="classOpenMS_1_1SequestInfile.html#ae0f4e8b27fb0fe17831c51d32b973b08">SequestInfile</a>
</li>
<li>setNeutralLossMonoMass()
: <a class="el" href="classOpenMS_1_1ResidueModification.html#ad4e47bc2f32f3783dcadc1432c9fcd55">ResidueModification</a>
</li>
<li>setNoise()
: <a class="el" href="classOpenMS_1_1CentroidData.html#a88c5961a1453d673f2537120dbab4673">CentroidData</a>
</li>
<li>setNominalMass()
: <a class="el" href="classOpenMS_1_1ims_1_1IMSIsotopeDistribution.html#ae939df1099c7e1293c3ddb928ed5c5bb">IMSIsotopeDistribution</a>
</li>
<li>setNormalizedIntensityValues()
: <a class="el" href="classOpenMS_1_1ConsensusMapNormalizerAlgorithmQuantile.html#aef267aa33a824d7f3699b7281c588221">ConsensusMapNormalizerAlgorithmQuantile</a>
</li>
<li>setNormalizeXcorr()
: <a class="el" href="classOpenMS_1_1SequestInfile.html#aa25381cb1ad759b41483b4faaf671bc6">SequestInfile</a>
</li>
<li>setNrIsotopes()
: <a class="el" href="classOpenMS_1_1DeconvPeak.html#a5a74d2560bbe7a022f44f0e605f2f609">DeconvPeak</a>
</li>
<li>setNTerminalModification()
: <a class="el" href="classOpenMS_1_1AASequence.html#aa727d12a256bc8953c20051fd1a0009a">AASequence</a>
</li>
<li>setNTermLossFormulas()
: <a class="el" href="classOpenMS_1_1Residue.html#ae666c0b10892cee1a014300e9c63a902">Residue</a>
</li>
<li>setNTermLossNames()
: <a class="el" href="classOpenMS_1_1Residue.html#a3ee85a268164ec7c4c96929fea81466b">Residue</a>
</li>
<li>setNucleotideReadingFrame()
: <a class="el" href="classOpenMS_1_1SequestInfile.html#a274d6b0683d81593bbc4501015107e4d">SequestInfile</a>
</li>
<li>setNull()
: <a class="el" href="classOpenMS_1_1MzTabNullAbleInterface.html#a75f4e33265f98c9ab12d0c2061832a26">MzTabNullAbleInterface</a>
, <a class="el" href="classOpenMS_1_1MzTabNullAbleBase.html#af0795cb0a5a0a5d750aafe908ea55dd4">MzTabNullAbleBase</a>
, <a class="el" href="classOpenMS_1_1MzTabNullNaNAndInfAbleBase.html#af0795cb0a5a0a5d750aafe908ea55dd4">MzTabNullNaNAndInfAbleBase</a>
, <a class="el" href="classOpenMS_1_1MzTabDoubleList.html#af0795cb0a5a0a5d750aafe908ea55dd4">MzTabDoubleList</a>
, <a class="el" href="classOpenMS_1_1MzTabString.html#af0795cb0a5a0a5d750aafe908ea55dd4">MzTabString</a>
, <a class="el" href="classOpenMS_1_1MzTabParameter.html#af0795cb0a5a0a5d750aafe908ea55dd4">MzTabParameter</a>
, <a class="el" href="classOpenMS_1_1MzTabParameterList.html#af0795cb0a5a0a5d750aafe908ea55dd4">MzTabParameterList</a>
, <a class="el" href="classOpenMS_1_1MzTabStringList.html#af0795cb0a5a0a5d750aafe908ea55dd4">MzTabStringList</a>
, <a class="el" href="structOpenMS_1_1MzTabModification.html#af0795cb0a5a0a5d750aafe908ea55dd4">MzTabModification</a>
, <a class="el" href="classOpenMS_1_1MzTabModificationList.html#af0795cb0a5a0a5d750aafe908ea55dd4">MzTabModificationList</a>
, <a class="el" href="classOpenMS_1_1MzTabSpectraRef.html#af0795cb0a5a0a5d750aafe908ea55dd4">MzTabSpectraRef</a>
</li>
<li>setNumber()
: <a class="el" href="classOpenMS_1_1Sample.html#aaceba394b6b63cd6b81cbb02e3fd6b7b">Sample</a>
</li>
<li>setNumberIterations()
: <a class="el" href="classOpenMS_1_1OptimizePick.html#a0eda2287a69d416407ac20013ac5df63">OptimizePick</a>
</li>
<li>setNumberOfMissedCleavages()
: <a class="el" href="classOpenMS_1_1XTandemInfile.html#a7050a1f56b2f999cd8f8cc03306ac4df">XTandemInfile</a>
</li>
<li>setNumberOfModifications()
: <a class="el" href="classOpenMS_1_1ModifierRep.html#a552dd945b87317962e726bc1c5c73411">ModifierRep</a>
, <a class="el" href="classOpenMS_1_1SuffixArray.html#a42afad5b2df41f737839ebf8e31d6cb1">SuffixArray</a>
, <a class="el" href="classOpenMS_1_1SuffixArrayPeptideFinder.html#a923f68e74c7b952fc7acb4f4aa3f4dcc">SuffixArrayPeptideFinder</a>
, <a class="el" href="classOpenMS_1_1SuffixArraySeqan.html#a04c30ff2f4f8f35549000277592c9e8d">SuffixArraySeqan</a>
, <a class="el" href="classOpenMS_1_1SuffixArrayTrypticCompressed.html#a04c30ff2f4f8f35549000277592c9e8d">SuffixArrayTrypticCompressed</a>
</li>
<li>setNumberOfThreads()
: <a class="el" href="classOpenMS_1_1XTandemInfile.html#a0319b8dfadbc813b3c65986983040eb6">XTandemInfile</a>
</li>
<li>setObjective()
: <a class="el" href="classOpenMS_1_1LPWrapper.html#a0bfbf9e02379ec25ad508535c59c4c9e">LPWrapper</a>
</li>
<li>setObjectiveSense()
: <a class="el" href="classOpenMS_1_1LPWrapper.html#a2d3c3567c38e6457bcfbf0c1f2f80a27">LPWrapper</a>
</li>
<li>setObservedIntensity()
: <a class="el" href="classOpenMS_1_1AccurateMassSearchResult.html#a4685d577c824585858cb15a68f5a2597">AccurateMassSearchResult</a>
</li>
<li>setObservedRT()
: <a class="el" href="classOpenMS_1_1AccurateMassSearchResult.html#a9362065a876579cb2d2fe56c978fda70">AccurateMassSearchResult</a>
</li>
<li>setOffset()
: <a class="el" href="classOpenMS_1_1Math_1_1LinearInterpolation.html#ad57c2759700bcb41eb0f63198091b2a6">LinearInterpolation&lt; Key, Value &gt;</a>
, <a class="el" href="classOpenMS_1_1EGHModel.html#a8b61dd0394b3edd2023ec8b7b08aca7a">EGHModel</a>
, <a class="el" href="classOpenMS_1_1BiGaussModel.html#a8b61dd0394b3edd2023ec8b7b08aca7a">BiGaussModel</a>
, <a class="el" href="classOpenMS_1_1EmgModel.html#a8b61dd0394b3edd2023ec8b7b08aca7a">EmgModel</a>
, <a class="el" href="classOpenMS_1_1ExtendedIsotopeModel.html#a8b61dd0394b3edd2023ec8b7b08aca7a">ExtendedIsotopeModel</a>
, <a class="el" href="classOpenMS_1_1GaussModel.html#a8b61dd0394b3edd2023ec8b7b08aca7a">GaussModel</a>
, <a class="el" href="classOpenMS_1_1InterpolationModel.html#a90f98af937fa9350cdc4e5555bfbc7d5">InterpolationModel</a>
, <a class="el" href="classOpenMS_1_1IsotopeModel.html#a8b61dd0394b3edd2023ec8b7b08aca7a">IsotopeModel</a>
, <a class="el" href="classOpenMS_1_1LmaGaussModel.html#a8b61dd0394b3edd2023ec8b7b08aca7a">LmaGaussModel</a>
, <a class="el" href="classOpenMS_1_1LmaIsotopeModel.html#a8b61dd0394b3edd2023ec8b7b08aca7a">LmaIsotopeModel</a>
</li>
<li>setOffset_0()
: <a class="el" href="classOpenMS_1_1Math_1_1BilinearInterpolation.html#ae37c0e257ddc6ced0e4785fb504d27c9">BilinearInterpolation&lt; Key, Value &gt;</a>
</li>
<li>setOffset_1()
: <a class="el" href="classOpenMS_1_1Math_1_1BilinearInterpolation.html#a724b9fe024499824d769330382bc3f09">BilinearInterpolation&lt; Key, Value &gt;</a>
</li>
<li>setOneLetterCode()
: <a class="el" href="classOpenMS_1_1Residue.html#aa04a549713c325a0dac5c8308a0e5130">Residue</a>
</li>
<li>setOption()
: <a class="el" href="classOpenMS_1_1PILISCrossValidation.html#aafead117353621e9917a873670e166a3">PILISCrossValidation</a>
</li>
<li>setOptions()
: <a class="el" href="classOpenMS_1_1PILISCrossValidation.html#abccda0f3fa9908bcc35af7aa5f0edabf">PILISCrossValidation</a>
, <a class="el" href="classOpenMS_1_1FeatureXMLFile.html#acfe7abbe6a9e29a039bd330a2599423e">FeatureXMLFile</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1MzDataHandler.html#a2d6d13f6b8cb30e7943d4996e9ef2af7">MzDataHandler&lt; MapType &gt;</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1MzMLHandler.html#add88f8d4748f8b7c90f08964ee7938f4">MzMLHandler&lt; MapType &gt;</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1MzXMLHandler.html#a2d6d13f6b8cb30e7943d4996e9ef2af7">MzXMLHandler&lt; MapType &gt;</a>
, <a class="el" href="classOpenMS_1_1MzDataFile.html#a1ca25ef92439c075ba19c17478495e69">MzDataFile</a>
, <a class="el" href="classOpenMS_1_1MzMLFile.html#a1ca25ef92439c075ba19c17478495e69">MzMLFile</a>
, <a class="el" href="classOpenMS_1_1MzXMLFile.html#a1ca25ef92439c075ba19c17478495e69">MzXMLFile</a>
</li>
<li>setOrder()
: <a class="el" href="classOpenMS_1_1IonDetector.html#a5b7d6f465d2b2dade6c296d9aa439b9c">IonDetector</a>
, <a class="el" href="classOpenMS_1_1IonSource.html#a5b7d6f465d2b2dade6c296d9aa439b9c">IonSource</a>
, <a class="el" href="classOpenMS_1_1MassAnalyzer.html#a5b7d6f465d2b2dade6c296d9aa439b9c">MassAnalyzer</a>
</li>
<li>setOrganism()
: <a class="el" href="classOpenMS_1_1Sample.html#a07d9b2b46b9fbe80fe0ddf33f31215c8">Sample</a>
</li>
<li>setOrgIntensity()
: <a class="el" href="classOpenMS_1_1CentroidPeak.html#ad877c702e8a89361b3ce0c2da5a565bb">CentroidPeak</a>
</li>
<li>setOrigin()
: <a class="el" href="classOpenMS_1_1ResidueModification.html#aa87765da8ffe836e75fc8d691b959599">ResidueModification</a>
</li>
<li>setOutDir()
: <a class="el" href="classOpenMS_1_1TOPPASScene.html#a103e8d6116a607f2ae4bd06e0d6d336e">TOPPASScene</a>
</li>
<li>setOutputFilename()
: <a class="el" href="classOpenMS_1_1XTandemInfile.html#acc00663d2841818baf8f402108b02d9c">XTandemInfile</a>
</li>
<li>setOutputLines()
: <a class="el" href="classOpenMS_1_1SequestInfile.html#a0aa38ef3805976ce3dc80324680ef9b6">SequestInfile</a>
</li>
<li>setOverallQuality()
: <a class="el" href="classOpenMS_1_1Feature.html#aeba0cded976431f70fbea5499218ce18">Feature</a>
</li>
<li>setParam()
: <a class="el" href="classOpenMS_1_1ModelDescription.html#a0414cacdf92a525604d934cbf2a5c879">ModelDescription&lt; D &gt;</a>
, <a class="el" href="classOpenMS_1_1TOPPASToolVertex.html#a0414cacdf92a525604d934cbf2a5c879">TOPPASToolVertex</a>
</li>
<li>setParameter()
: <a class="el" href="classOpenMS_1_1SVMWrapper.html#aaab43dce4d58ac014e058817bd1f76f1">SVMWrapper</a>
</li>
<li>setParameters()
: <a class="el" href="classOpenMS_1_1DefaultParamHandler.html#abc8067511cfc949ae942ea2b08588f81">DefaultParamHandler</a>
</li>
<li>setParameters_()
: <a class="el" href="classOpenMS_1_1QTClusterFinder.html#a8c0773c6f60d7f89dd3d9d1c3861bc9b">QTClusterFinder</a>
</li>
<li>setPartialSequence()
: <a class="el" href="classOpenMS_1_1SequestInfile.html#ac97142d903541bbf8a77f081ace91b97">SequestInfile</a>
</li>
<li>setPassThreshold()
: <a class="el" href="classOpenMS_1_1IdentificationHit.html#adb461b8e40ac4f3e51118bd83c682c12">IdentificationHit</a>
</li>
<li>setPathToFile()
: <a class="el" href="classOpenMS_1_1SourceFile.html#a2edd9a092842480801a9738a3a514fb3">SourceFile</a>
</li>
<li>setPeakMassTolerance()
: <a class="el" href="classOpenMS_1_1InspectInfile.html#a52f9f22f0a5f135328a4281eebeb75c0">InspectInfile</a>
, <a class="el" href="classOpenMS_1_1MascotInfile.html#ac60ed3df77f563b0c00f93f2a620ab76">MascotInfile</a>
, <a class="el" href="classOpenMS_1_1SequestInfile.html#a52f9f22f0a5f135328a4281eebeb75c0">SequestInfile</a>
</li>
<li>setPen()
: <a class="el" href="classOpenMS_1_1Annotations1DContainer.html#a499165f4744b6d22da7b24295910fb2c">Annotations1DContainer</a>
</li>
<li>setPenalties()
: <a class="el" href="classOpenMS_1_1OptimizePeakDeconvolution.html#acf2242ca0f5bb625f5c3da3dc54c7483">OptimizePeakDeconvolution</a>
, <a class="el" href="classOpenMS_1_1OptimizePick.html#a124c4f2b2da566cd87823238ca1101b7">OptimizePick</a>
, <a class="el" href="classOpenMS_1_1TwoDOptimization.html#a165bfd792d0e5b693e0cdd6a9782d27f">TwoDOptimization</a>
</li>
<li>setPeptideGroupLabel()
: <a class="el" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html#aa340d259b540458620879a62e3dbc0df">Peptide</a>
</li>
<li>setPeptideIdentifications()
: <a class="el" href="classOpenMS_1_1BaseFeature.html#a074e4fbd92a2e4859c64da1eaf10d595">BaseFeature</a>
, <a class="el" href="classOpenMS_1_1SpectrumSettings.html#ad8353d4813677878576bd3a05c847a2c">SpectrumSettings</a>
</li>
<li>setPeptideMassUnit()
: <a class="el" href="classOpenMS_1_1SequestInfile.html#ae4eebd1a52e25a916dc913861d6c8009">SequestInfile</a>
</li>
<li>setPeptideProtonDistribution()
: <a class="el" href="classOpenMS_1_1ProtonDistributionModel.html#a20580da4cc198885e3eb646e9e4c2b2e">ProtonDistributionModel</a>
</li>
<li>setPeptideRef()
: <a class="el" href="classOpenMS_1_1ReactionMonitoringTransition.html#a17a7294d38a06f0342e3dafbb41edb41">ReactionMonitoringTransition</a>
, <a class="el" href="classOpenMS_1_1IncludeExcludeTarget.html#a17a7294d38a06f0342e3dafbb41edb41">IncludeExcludeTarget</a>
</li>
<li>setPeptides()
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#a2b315d3dbafa87885ac5b1d1712f7da8">TargetedExperiment</a>
</li>
<li>setPeptideSectionData()
: <a class="el" href="classOpenMS_1_1MzTab.html#a294b20286a6df3c63fbd7d2200b7c0b6">MzTab</a>
</li>
<li>setPercentage()
: <a class="el" href="classOpenMS_1_1Gradient.html#a38ccde1810c48c3b081891d4e19a2689">Gradient</a>
</li>
<li>setPermut()
: <a class="el" href="classOpenMS_1_1CompNovoIdentificationBase_1_1Permut.html#aaa402ac745c7c5354890e7b26cd5c4b6">CompNovoIdentificationBase::Permut</a>
</li>
<li>setPersistenceId()
: <a class="el" href="classOpenMS_1_1PersistentObject.html#ab1d88f1b260549db53cf50056e42dde9">PersistentObject</a>
</li>
<li>setPh()
: <a class="el" href="classOpenMS_1_1Digestion.html#aaf3a58de583d072fb6eaea11b7d08f46">Digestion</a>
</li>
<li>setPipelineRunning()
: <a class="el" href="classOpenMS_1_1TOPPASScene.html#a0c1cb7c43537492e1e0f76b43c0d008b">TOPPASScene</a>
</li>
<li>setPka()
: <a class="el" href="classOpenMS_1_1Residue.html#a661832ddc7821e3fc48ad9618282b65f">Residue</a>
</li>
<li>setPkb()
: <a class="el" href="classOpenMS_1_1Residue.html#ad181ec6ca95ffa09e0f6baa34a52a7b8">Residue</a>
</li>
<li>setPkc()
: <a class="el" href="classOpenMS_1_1Residue.html#ab33a7b36dac73eb603af77a09a4c2172">Residue</a>
</li>
<li>setPolarity()
: <a class="el" href="classOpenMS_1_1InstrumentSettings.html#a205c68b92698410dc6142632417ae0c8">InstrumentSettings</a>
, <a class="el" href="classOpenMS_1_1IonSource.html#a1d9f4ba1e172a487acb87c951b40b31e">IonSource</a>
</li>
<li>setPoolFile()
: <a class="el" href="classOpenMS_1_1DocumentIDTagger.html#a17f77efff59d80ffa4d1296a8e1b6eef">DocumentIDTagger</a>
</li>
<li>setPos()
: <a class="el" href="classOpenMS_1_1ChromatogramPeak.html#ad6014aac4271f2db3e69e028a880e7ee">ChromatogramPeak</a>
, <a class="el" href="classOpenMS_1_1Peak1D.html#ad6014aac4271f2db3e69e028a880e7ee">Peak1D</a>
</li>
<li>setPosition()
: <a class="el" href="classOpenMS_1_1ChromatogramPeak.html#ad2a429ebb5c285cf90e9a386d0df7f43">ChromatogramPeak</a>
, <a class="el" href="classOpenMS_1_1Peak1D.html#ad2a429ebb5c285cf90e9a386d0df7f43">Peak1D</a>
, <a class="el" href="classOpenMS_1_1Peak2D.html#abbdecccbbcf763c6c5eae3b7c3cb915e">Peak2D</a>
, <a class="el" href="classOpenMS_1_1Annotation1DPeakItem.html#a2da526ad08dac087b231ac4258f11c22">Annotation1DPeakItem</a>
, <a class="el" href="classOpenMS_1_1Annotation1DTextItem.html#a2da526ad08dac087b231ac4258f11c22">Annotation1DTextItem</a>
</li>
<li>setPositionsAndParameters()
: <a class="el" href="structOpenMS_1_1MzTabModification.html#ae81d48420622d4cbb44cf25893e99e78">MzTabModification</a>
</li>
<li>setPossibleChargeStates()
: <a class="el" href="classOpenMS_1_1Precursor.html#af4021c18e3d4f1ed8a68629ef284574a">Precursor</a>
</li>
<li>setPost()
: <a class="el" href="classOpenMS_1_1PeptideEvidence.html#a38a8f46b22c6536d94a494709858220a">PeptideEvidence</a>
</li>
<li>setPre()
: <a class="el" href="classOpenMS_1_1PeptideEvidence.html#aae1c9de02c35d5099ae9930e29eae702">PeptideEvidence</a>
</li>
<li>setPrecision()
: <a class="el" href="classOpenMS_1_1ims_1_1Weights.html#a25227be00853d0c695aa408f26602888">Weights</a>
</li>
<li>setPrecursor()
: <a class="el" href="classOpenMS_1_1ChromatogramSettings.html#a0a8f9bc268beb0d7cb85ca0ffcadbca4">ChromatogramSettings</a>
</li>
<li>setPrecursorCHRG()
: <a class="el" href="classOpenMS_1_1MSPeak.html#a91c02844594d373dc0f7470bccfde596">MSPeak</a>
</li>
<li>setPrecursorChrg()
: <a class="el" href="classOpenMS_1_1MS2ConsensusSpectrum.html#aeced7cdac763485acf95d1c1e7783008">MS2ConsensusSpectrum</a>
</li>
<li>setPrecursorCVTermList()
: <a class="el" href="classOpenMS_1_1ReactionMonitoringTransition.html#a73d282041117315a413758ccdef0a649">ReactionMonitoringTransition</a>
, <a class="el" href="classOpenMS_1_1IncludeExcludeTarget.html#a73d282041117315a413758ccdef0a649">IncludeExcludeTarget</a>
</li>
<li>setPrecursorErrorType()
: <a class="el" href="classOpenMS_1_1XTandemInfile.html#a9d3b81e01329394731a6f50737c567d7">XTandemInfile</a>
</li>
<li>setPrecursorMassErrorUnit()
: <a class="el" href="classOpenMS_1_1XTandemInfile.html#a9f148521dfe4aba34d3a17a658c34cf4">XTandemInfile</a>
</li>
<li>setPrecursorMassTolerance()
: <a class="el" href="classOpenMS_1_1InspectInfile.html#a2e1acd8968acfb43f557177a93ed0155">InspectInfile</a>
, <a class="el" href="classOpenMS_1_1MascotInfile.html#a2e1acd8968acfb43f557177a93ed0155">MascotInfile</a>
, <a class="el" href="classOpenMS_1_1SequestInfile.html#a2e1acd8968acfb43f557177a93ed0155">SequestInfile</a>
</li>
<li>setPrecursorMassToleranceMinus()
: <a class="el" href="classOpenMS_1_1XTandemInfile.html#a6b56691db8072b326b04988c64cc8a00">XTandemInfile</a>
</li>
<li>setPrecursorMassTolerancePlus()
: <a class="el" href="classOpenMS_1_1XTandemInfile.html#add94f59e1f898a6255ffa7d01f9da414">XTandemInfile</a>
</li>
<li>setPrecursorMZ()
: <a class="el" href="classOpenMS_1_1ReactionMonitoringTransition.html#a3eacba8b18c985a044eb85e7a0e2626d">ReactionMonitoringTransition</a>
, <a class="el" href="classOpenMS_1_1IncludeExcludeTarget.html#a3eacba8b18c985a044eb85e7a0e2626d">IncludeExcludeTarget</a>
, <a class="el" href="classOpenMS_1_1MS2Fragment.html#a0e7de5e2eb348bfde5a920a8db3652a6">MS2Fragment</a>
, <a class="el" href="classOpenMS_1_1MSPeak.html#a28addad3734bcf15bf2744f5f424a36c">MSPeak</a>
</li>
<li>setPrecursors()
: <a class="el" href="classOpenMS_1_1SpectrumSettings.html#ad85e4e6fe1ec77097d9108f38a8e57ae">SpectrumSettings</a>
</li>
<li>setPrediction()
: <a class="el" href="classOpenMS_1_1ReactionMonitoringTransition.html#a24c9e655a65ea5c1f28429bbed6da098">ReactionMonitoringTransition</a>
, <a class="el" href="classOpenMS_1_1IncludeExcludeTarget.html#ab41294cb9e95c657bdb29316f9a0a5a8">IncludeExcludeTarget</a>
</li>
<li>setPrefix()
: <a class="el" href="classOpenMS_1_1Logger_1_1LogStream.html#a7ca325997ca4efb5081584792643cc9b">LogStream</a>
</li>
<li>setPressure()
: <a class="el" href="classOpenMS_1_1HPLC.html#acc03011c05988a7d99ee113023388abe">HPLC</a>
</li>
<li>setPrintDuplicateReferences()
: <a class="el" href="classOpenMS_1_1SequestInfile.html#a2c3845e0a72f73db9eb5badffa69ad79">SequestInfile</a>
</li>
<li>setProcessingActions()
: <a class="el" href="classOpenMS_1_1DataProcessing.html#ace28c93a6e52cfa962de6e5f4bad1fc8">DataProcessing</a>
</li>
<li>setProduct()
: <a class="el" href="classOpenMS_1_1ReactionMonitoringTransition.html#a7b9ed62cc5a447838f5ff3a4faecfe71">ReactionMonitoringTransition</a>
, <a class="el" href="classOpenMS_1_1ChromatogramSettings.html#a373a5fb6259f2476f904deccf8d902d0">ChromatogramSettings</a>
</li>
<li>setProductCVTermList()
: <a class="el" href="classOpenMS_1_1IncludeExcludeTarget.html#aa69d0b371cb22a12a37a6b045695c735">IncludeExcludeTarget</a>
</li>
<li>setProductMZ()
: <a class="el" href="classOpenMS_1_1ReactionMonitoringTransition.html#ad846afdcaf328258ec70c35028a8f883">ReactionMonitoringTransition</a>
, <a class="el" href="classOpenMS_1_1IncludeExcludeTarget.html#ad846afdcaf328258ec70c35028a8f883">IncludeExcludeTarget</a>
</li>
<li>setProducts()
: <a class="el" href="classOpenMS_1_1SpectrumSettings.html#a4c885541f914c01ed12161ec020b2c3e">SpectrumSettings</a>
</li>
<li>setProgress()
: <a class="el" href="classOpenMS_1_1ProgressLogger.html#a8852277abd03220cc7b80d6c1bed6fed">ProgressLogger</a>
</li>
<li>setProteinAccessions()
: <a class="el" href="classOpenMS_1_1PeptideHit.html#a5ea8c859b5c1be50647be476123990fe">PeptideHit</a>
</li>
<li>setProteinData()
: <a class="el" href="classOpenMS_1_1ProteinResolver.html#ac6f8b6589ab42c93b042408740dd1c14">ProteinResolver</a>
</li>
<li>setProteinIdentifications()
: <a class="el" href="classOpenMS_1_1ConsensusMap.html#a6d85ac28bb82da988383fd19b8504988">ConsensusMap</a>
, <a class="el" href="classOpenMS_1_1FeatureMap.html#a6d85ac28bb82da988383fd19b8504988">FeatureMap&lt; FeatureT &gt;</a>
, <a class="el" href="classOpenMS_1_1ExperimentalSettings.html#a6d85ac28bb82da988383fd19b8504988">ExperimentalSettings</a>
</li>
<li>setProteinMassFilter()
: <a class="el" href="classOpenMS_1_1SequestInfile.html#a37aa60940da4fc55690b3d9c1b130254">SequestInfile</a>
</li>
<li>setProteins()
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#adcb976b42f7b4e257a4f0a1cfda5e6f7">TargetedExperiment</a>
</li>
<li>setProteinSectionData()
: <a class="el" href="classOpenMS_1_1MzTab.html#ab803d18502d33fa7c59af67e48d6efb7">MzTab</a>
</li>
<li>setPseudoCounts()
: <a class="el" href="classOpenMS_1_1HiddenMarkovModel.html#a6a3ae9256806b810cf0a28f5f9cfde11">HiddenMarkovModel</a>
</li>
<li>setPSIMODAccession()
: <a class="el" href="classOpenMS_1_1ResidueModification.html#a6174359cf34b54be25bd5c5270e4a34b">ResidueModification</a>
</li>
<li>setPublications()
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#a5c9e6ead01c84a01786096813ee20a81">TargetedExperiment</a>
</li>
<li>setQuality()
: <a class="el" href="classOpenMS_1_1BaseFeature.html#a0854658ebdbcc8fd974c7836657cfd3c">BaseFeature</a>
, <a class="el" href="classOpenMS_1_1Feature.html#a93cd3fc199fc903768e3b8d7fafaeb95">Feature</a>
</li>
<li>setQueryMass()
: <a class="el" href="classOpenMS_1_1AccurateMassSearchResult.html#a22153fcd059ccef9af3390d888ece003">AccurateMassSearchResult</a>
</li>
<li>setQuerySpectra()
: <a class="el" href="classOpenMS_1_1MascotRemoteQuery.html#aa181abb71b3a036452ddba7c45daeebd">MascotRemoteQuery</a>
</li>
<li>setRange()
: <a class="el" href="classOpenMS_1_1Spectrum1DGoToDialog.html#aa2bae9ca6aef1aafd58a1f0dbd7f4794">Spectrum1DGoToDialog</a>
, <a class="el" href="classOpenMS_1_1Spectrum2DGoToDialog.html#a0ceee2b9ab94240de039d9d255919644">Spectrum2DGoToDialog</a>
</li>
<li>setRank()
: <a class="el" href="classOpenMS_1_1PeptideHit.html#a7daed733ac80f8002f3a1fbdc97c21e1">PeptideHit</a>
, <a class="el" href="classOpenMS_1_1IdentificationHit.html#ae8471fd8e48ccfd3ad5efea4b61f410d">IdentificationHit</a>
, <a class="el" href="classOpenMS_1_1ProteinHit.html#a7daed733ac80f8002f3a1fbdc97c21e1">ProteinHit</a>
</li>
<li>setRatios()
: <a class="el" href="classOpenMS_1_1ConsensusFeature.html#a4ed88f62492c3938317babe50d1c1972">ConsensusFeature</a>
</li>
<li>setReagentName()
: <a class="el" href="classOpenMS_1_1Modification.html#a027f65199eb3338f8a0ddc04e1c815d5">Modification</a>
</li>
<li>setRecycling()
: <a class="el" href="classOpenMS_1_1TOPPASVertex.html#a678671420b7918f9ec8ef4113115779e">TOPPASVertex</a>
</li>
<li>setReference()
: <a class="el" href="classOpenMS_1_1FeatureGroupingAlgorithmUnlabeled.html#ad5052975ead111d198ea2503b0b2b17c">FeatureGroupingAlgorithmUnlabeled</a>
, <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithm.html#aef01d65c73bbdd9f550309195007622b">MapAlignmentAlgorithm</a>
, <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithmIdentification.html#aef01d65c73bbdd9f550309195007622b">MapAlignmentAlgorithmIdentification</a>
, <a class="el" href="classOpenMS_1_1MapAlignmentAlgorithmPoseClustering.html#a6110872a350e1ac11924dcc470cb6714">MapAlignmentAlgorithmPoseClustering</a>
</li>
<li>setRefine()
: <a class="el" href="classOpenMS_1_1XTandemInfile.html#a40331dbf5dd68a5bf02ead05c23d9aa2">XTandemInfile</a>
</li>
<li>setReflectronState()
: <a class="el" href="classOpenMS_1_1MassAnalyzer.html#a000fcbba4b64f34da2819581fc35443f">MassAnalyzer</a>
</li>
<li>setRemovePrecursorNearPeaks()
: <a class="el" href="classOpenMS_1_1SequestInfile.html#a56f77cb6aed87310b1c9769029cf01f5">SequestInfile</a>
</li>
<li>setRequirementLevel()
: <a class="el" href="classOpenMS_1_1CVMappingRule.html#a37d73ccf7fe4e4c74b603bf9e4a81435">CVMappingRule</a>
</li>
<li>setResidues()
: <a class="el" href="classOpenMS_1_1ResidueDB.html#a96e0e2f8430d812bedbf54e193d32d29">ResidueDB</a>
</li>
<li>setResidueSets()
: <a class="el" href="classOpenMS_1_1Residue.html#a9f89b8b676fc550f098d8a9b443c121a">Residue</a>
</li>
<li>setResiduesInUpperCase()
: <a class="el" href="classOpenMS_1_1SequestInfile.html#a28b3bc7363152114b522504470fc1fca">SequestInfile</a>
</li>
<li>setResolution()
: <a class="el" href="classOpenMS_1_1IonDetector.html#aa6c13dd3a27b1c13f4e240d6f4f8c4d3">IonDetector</a>
, <a class="el" href="classOpenMS_1_1MassAnalyzer.html#aa6c13dd3a27b1c13f4e240d6f4f8c4d3">MassAnalyzer</a>
</li>
<li>setResolutionMethod()
: <a class="el" href="classOpenMS_1_1MassAnalyzer.html#a248c39266a3935b06b981254aa02487a">MassAnalyzer</a>
</li>
<li>setResolutionType()
: <a class="el" href="classOpenMS_1_1MassAnalyzer.html#a6394f9d7a9b0355daca159b81617341c">MassAnalyzer</a>
</li>
<li>setRestrictions()
: <a class="el" href="classOpenMS_1_1Internal_1_1ListEditorDelegate.html#a2b2a09e6eba78ceb379c714a48e8b335">ListEditorDelegate</a>
</li>
<li>setRetentionTime()
: <a class="el" href="classOpenMS_1_1ReactionMonitoringTransition.html#ace4d6d02a2a0bc5cc62de3e42b65aaa6">ReactionMonitoringTransition</a>
, <a class="el" href="classOpenMS_1_1IncludeExcludeTarget.html#ace4d6d02a2a0bc5cc62de3e42b65aaa6">IncludeExcludeTarget</a>
, <a class="el" href="classOpenMS_1_1CentroidPeak.html#a60e46163a3f2c97cca75317b9ad097af">CentroidPeak</a>
, <a class="el" href="classOpenMS_1_1MS2Info.html#ae860b9adc7e28603458c1deb2014c6da">MS2Info</a>
</li>
<li>setRightEndpoint()
: <a class="el" href="structOpenMS_1_1PeakShape.html#a46153468d71f6c67f31d2b407509d1e8">PeakShape</a>
</li>
<li>setRightPaddingIndex()
: <a class="el" href="classOpenMS_1_1ContinuousWaveletTransform.html#a6633a0231d4cec3a1f4bc1db5c9daa42">ContinuousWaveletTransform</a>
</li>
<li>setRightSplitter()
: <a class="el" href="classOpenMS_1_1HistogramWidget.html#ab5a2dafbc4b18c98a11c00dadf7470bb">HistogramWidget</a>
, <a class="el" href="classOpenMS_1_1HistogramDialog.html#a213ceee8e81419d864b65cc2d4b761a2">HistogramDialog</a>
</li>
<li>setRnd()
: <a class="el" href="classOpenMS_1_1BaseLabeler.html#abf6ea7bdfe009f1dc969fe767b963322">BaseLabeler</a>
</li>
<li>setRowBounds()
: <a class="el" href="classOpenMS_1_1LPWrapper.html#a17d84f0d24cd5c7504075811566ae34d">LPWrapper</a>
</li>
<li>setRowName()
: <a class="el" href="classOpenMS_1_1LPWrapper.html#a46e0588a684c29754984390dcb119828">LPWrapper</a>
</li>
<li>setRT()
: <a class="el" href="classOpenMS_1_1ChromatogramPeak.html#a98fe0c3fba1788864d35d8ef6159459f">ChromatogramPeak</a>
, <a class="el" href="classOpenMS_1_1MSSpectrum.html#aac8c50f318154e9e5b7b01aee806e17f">MSSpectrum&lt; PeakT &gt;</a>
, <a class="el" href="classOpenMS_1_1Peak2D.html#a396c5ebcac2e70f9b9a478bb2456985b">Peak2D</a>
</li>
<li>setRTRange()
: <a class="el" href="classOpenMS_1_1PeakFileOptions.html#a4130b4e0663669bef8b86a3dd2bc1b22">PeakFileOptions</a>
, <a class="el" href="classOpenMS_1_1FeatureFileOptions.html#a4130b4e0663669bef8b86a3dd2bc1b22">FeatureFileOptions</a>
</li>
<li>setSample()
: <a class="el" href="classOpenMS_1_1ExperimentalSettings.html#a0385726a3501607dc61d02dbe9dc5345">ExperimentalSettings</a>
</li>
<li>setSamples()
: <a class="el" href="classOpenMS_1_1IsotopeModel.html#a25bf82b50f501ccd61f840c4370df70c">IsotopeModel</a>
, <a class="el" href="classOpenMS_1_1EGHModel.html#a79142df18e1c10cc321e68ddb3ee72df">EGHModel</a>
, <a class="el" href="classOpenMS_1_1BiGaussModel.html#a79142df18e1c10cc321e68ddb3ee72df">BiGaussModel</a>
, <a class="el" href="classOpenMS_1_1EmgModel.html#a79142df18e1c10cc321e68ddb3ee72df">EmgModel</a>
, <a class="el" href="classOpenMS_1_1ExtendedIsotopeModel.html#a79142df18e1c10cc321e68ddb3ee72df">ExtendedIsotopeModel</a>
, <a class="el" href="classOpenMS_1_1GaussModel.html#a79142df18e1c10cc321e68ddb3ee72df">GaussModel</a>
, <a class="el" href="classOpenMS_1_1InterpolationModel.html#a60fdd8cda4e233752f186e1b0c735440">InterpolationModel</a>
, <a class="el" href="classOpenMS_1_1LmaGaussModel.html#a79142df18e1c10cc321e68ddb3ee72df">LmaGaussModel</a>
, <a class="el" href="classOpenMS_1_1LmaIsotopeModel.html#a79142df18e1c10cc321e68ddb3ee72df">LmaIsotopeModel</a>
</li>
<li>setSaveFileName()
: <a class="el" href="classOpenMS_1_1TOPPASScene.html#a2266f260f6de1de86ebe3920833e6d54">TOPPASScene</a>
</li>
<li>setScale()
: <a class="el" href="classOpenMS_1_1EuclideanSimilarity.html#a95228c125c12d7bc8c975fa362a60b9a">EuclideanSimilarity</a>
, <a class="el" href="classOpenMS_1_1Math_1_1LinearInterpolation.html#a82879891361b82e4fad43ee5c14a0e45">LinearInterpolation&lt; Key, Value &gt;</a>
, <a class="el" href="classOpenMS_1_1ProductModel_3_012_01_4.html#a6f73a9c8459a5cc55dada279e525437e">ProductModel&lt; 2 &gt;</a>
, <a class="el" href="classOpenMS_1_1ContinuousWaveletTransform.html#a7cb4d1d19ed70e08758e141c3242c2c7">ContinuousWaveletTransform</a>
</li>
<li>setScale_0()
: <a class="el" href="classOpenMS_1_1Math_1_1BilinearInterpolation.html#affe40d0610b4eb65cee25a111f2a53cc">BilinearInterpolation&lt; Key, Value &gt;</a>
</li>
<li>setScale_1()
: <a class="el" href="classOpenMS_1_1Math_1_1BilinearInterpolation.html#acc847d29558d7cd38be53b9e4b37cab0">BilinearInterpolation&lt; Key, Value &gt;</a>
</li>
<li>setScalingFactor()
: <a class="el" href="classOpenMS_1_1InterpolationModel.html#a469daa598e6a7d2b755bd36826beec49">InterpolationModel</a>
</li>
<li>setScanDirection()
: <a class="el" href="classOpenMS_1_1MassAnalyzer.html#af4b42c1902b00befb435be5e0e2239ee">MassAnalyzer</a>
</li>
<li>setScanLaw()
: <a class="el" href="classOpenMS_1_1MassAnalyzer.html#ac47980cff52080e1fd46f1983ff8d960">MassAnalyzer</a>
</li>
<li>setScanMode()
: <a class="el" href="classOpenMS_1_1InstrumentSettings.html#ae5412841952d50bcec24df4868e86e67">InstrumentSettings</a>
</li>
<li>setScanNumber()
: <a class="el" href="classOpenMS_1_1Deisotoper.html#af770019b60422529b1e562b943605368">Deisotoper</a>
</li>
<li>setScanRate()
: <a class="el" href="classOpenMS_1_1MassAnalyzer.html#ab478332cfcbe095f4ccce9381d7af978">MassAnalyzer</a>
</li>
<li>setScanTime()
: <a class="el" href="classOpenMS_1_1MassAnalyzer.html#a475edd3f1f00cb539e5812ecb0a6ca23">MassAnalyzer</a>
</li>
<li>setScanWindows()
: <a class="el" href="classOpenMS_1_1InstrumentSettings.html#acbf01b603699cf34b4607db445682de1">InstrumentSettings</a>
</li>
<li>setScopePath()
: <a class="el" href="classOpenMS_1_1CVMappingRule.html#aac1a0876d61811dfcf14f8d6cc029f16">CVMappingRule</a>
</li>
<li>setScore()
: <a class="el" href="classOpenMS_1_1FeatureHypothesis.html#a16a3a22f69fc031b7570fa5cc6a5071e">FeatureHypothesis</a>
, <a class="el" href="classOpenMS_1_1CompNovoIdentificationBase_1_1Permut.html#a2e9b7c12f6d8fa7415aa0aca69208f42">CompNovoIdentificationBase::Permut</a>
, <a class="el" href="classOpenMS_1_1PeptideHit.html#a2e9b7c12f6d8fa7415aa0aca69208f42">PeptideHit</a>
, <a class="el" href="classOpenMS_1_1ProteinHit.html#ae81d824b06eb6152f84276cdec74ce8b">ProteinHit</a>
, <a class="el" href="classOpenMS_1_1DeconvPeak.html#ac75fa7be46a2b80e0a1e112e916d0417">DeconvPeak</a>
</li>
<li>setScores()
: <a class="el" href="classOpenMS_1_1MRMFeature.html#a4261d380e359eb6a33d7ae4f3aa30998">MRMFeature</a>
</li>
<li>setScoreType()
: <a class="el" href="classOpenMS_1_1PeptideIdentification.html#a915462ec4a7a731fdd71f28e8a3463b1">PeptideIdentification</a>
, <a class="el" href="classOpenMS_1_1ProteinIdentification.html#a915462ec4a7a731fdd71f28e8a3463b1">ProteinIdentification</a>
</li>
<li>setSearchEngine()
: <a class="el" href="classOpenMS_1_1ProteinIdentification.html#a15a14866884b8b4dea8950b2151a0963">ProteinIdentification</a>
</li>
<li>setSearchEngineVersion()
: <a class="el" href="classOpenMS_1_1ProteinIdentification.html#a82e595befae76c1f7c22918420d2d9e8">ProteinIdentification</a>
</li>
<li>setSearchParameters()
: <a class="el" href="classOpenMS_1_1ProteinIdentification.html#afb0f58ddeea0e6f58da132fae1421563">ProteinIdentification</a>
</li>
<li>setSearchType()
: <a class="el" href="classOpenMS_1_1MascotInfile.html#a0e20fa11c8740e0c36614ec628bdb105">MascotInfile</a>
</li>
<li>setSectionDescription()
: <a class="el" href="classOpenMS_1_1Param.html#a7dae78ea20f5b33125f50c6ee27b1a60">Param</a>
</li>
<li>setSeed()
: <a class="el" href="classOpenMS_1_1UniqueIdGenerator.html#a742c41137d92bfe91be7c33279aa70a1">UniqueIdGenerator</a>
</li>
<li>setSeeds()
: <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html#a683154793bbb12ab5d16db81209606b0">FeatureFinderAlgorithm&lt; PeakType, FeatureType &gt;</a>
, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a683154793bbb12ab5d16db81209606b0">FeatureFinderAlgorithmPicked&lt; PeakType, FeatureType &gt;</a>
</li>
<li>setSelected()
: <a class="el" href="classOpenMS_1_1Annotation1DItem.html#ad42accd39af295a957386c68dac3dcae">Annotation1DItem</a>
</li>
<li>setSelectedPen()
: <a class="el" href="classOpenMS_1_1Annotations1DContainer.html#a9ecf7cde6ebdd9428bca693738d65148">Annotations1DContainer</a>
</li>
<li>setSemiCleavage()
: <a class="el" href="classOpenMS_1_1XTandemInfile.html#acb6509f25f47fca1ae2c4642ae3eb12a">XTandemInfile</a>
</li>
<li>setSeparator()
: <a class="el" href="classOpenMS_1_1BigString.html#a182ba12137dcc8b4b249d7b6abda433d">BigString</a>
, <a class="el" href="classOpenMS_1_1MzTabStringList.html#a50d04a775c8534846228d438a2d9b10f">MzTabStringList</a>
</li>
<li>setSequence()
: <a class="el" href="classOpenMS_1_1ims_1_1IMSElement.html#a716829d19f9485714fe6b6bc3525641a">IMSElement</a>
, <a class="el" href="classOpenMS_1_1PeptideHit.html#a209d1e10f38a766c3f73c9666e89e14d">PeptideHit</a>
, <a class="el" href="classOpenMS_1_1ProteinHit.html#a2b8bf5f3febdb76461bdea9ff39d6b6d">ProteinHit</a>
</li>
<li>setSequenceHeaderFilter()
: <a class="el" href="classOpenMS_1_1SequestInfile.html#a713b8ddd5ae67d4892d4c74a1b980efc">SequestInfile</a>
</li>
<li>setShortName()
: <a class="el" href="classOpenMS_1_1Residue.html#adb9b7e9fa81ed3537d3a8f4d63ecb0d4">Residue</a>
</li>
<li>setShortReportFlag()
: <a class="el" href="classOpenMS_1_1Deisotoper.html#a13a14f0b05a9d96dcba1b2cb4ad66f15">Deisotoper</a>
</li>
<li>setShowFragmentIons()
: <a class="el" href="classOpenMS_1_1SequestInfile.html#a01403cbfb2b867a9c260d459e77dfd29">SequestInfile</a>
</li>
<li>setSideChainBasicity()
: <a class="el" href="classOpenMS_1_1Residue.html#abb3d2a7caa0c117035f144abf637c75c">Residue</a>
</li>
<li>setSigma()
: <a class="el" href="classOpenMS_1_1IsotopeWaveletTransform.html#a718a711938d51f08a2c0aec9a5e8ad63">IsotopeWaveletTransform&lt; PeakType &gt;</a>
</li>
<li>setSignal()
: <a class="el" href="classOpenMS_1_1ContinuousWaveletTransform.html#a0738bcf2ac078d000b3310883b1d7fcb">ContinuousWaveletTransform</a>
</li>
<li>setSignalLength()
: <a class="el" href="classOpenMS_1_1ContinuousWaveletTransform.html#af77bb82f734def10f746457361c62226">ContinuousWaveletTransform</a>
</li>
<li>setSignalToNoise()
: <a class="el" href="classOpenMS_1_1MSPeak.html#a2bc85b81fcc094bb64aa370e659293fa">MSPeak</a>
, <a class="el" href="classOpenMS_1_1CentroidPeak.html#a2bc85b81fcc094bb64aa370e659293fa">CentroidPeak</a>
, <a class="el" href="classOpenMS_1_1SHFeature.html#a2bc85b81fcc094bb64aa370e659293fa">SHFeature</a>
</li>
<li>setSignificanceThreshold()
: <a class="el" href="classOpenMS_1_1PeptideIdentification.html#a8abccfc6fb1eceb2a2c43f17055a9360">PeptideIdentification</a>
, <a class="el" href="classOpenMS_1_1ProteinIdentification.html#a8abccfc6fb1eceb2a2c43f17055a9360">ProteinIdentification</a>
</li>
<li>setSingleMass()
: <a class="el" href="classOpenMS_1_1Adduct.html#a34b2db2b7a4bfe6cd11a92e0daa6bf25">Adduct</a>
</li>
<li>setSize()
: <a class="el" href="classOpenMS_1_1SaveImageDialog.html#aaf67e04c5b7de018c1128d552e742c03">SaveImageDialog</a>
</li>
<li>setSizeOnly()
: <a class="el" href="classOpenMS_1_1FeatureFileOptions.html#a561161064858c3a5049dbb7cb946323f">FeatureFileOptions</a>
</li>
<li>setSizeRatio_()
: <a class="el" href="classOpenMS_1_1SaveImageDialog.html#aea6503116cb94b652aff0169f57ae83b">SaveImageDialog</a>
</li>
<li>setSmallMoleculeSectionData()
: <a class="el" href="classOpenMS_1_1MzTab.html#a5d4afcfc0e282997f6cbc3ef9a441a84">MzTab</a>
</li>
<li>setSmoothedIntensities()
: <a class="el" href="classOpenMS_1_1MassTrace.html#abe46c495d57a1cc720226a55724058cf">MassTrace</a>
</li>
<li>setSNIntensityThreshold()
: <a class="el" href="classOpenMS_1_1LCElutionPeak.html#a53e3e55b0153576c1840554866cfc4aa">LCElutionPeak</a>
</li>
<li>setSoftware()
: <a class="el" href="classOpenMS_1_1DataProcessing.html#a8ff34073a7ed3fabe3f5deff96c0282e">DataProcessing</a>
, <a class="el" href="classOpenMS_1_1TargetedExperiment.html#ac8e50997acbafdc702c78dc8e6b5991c">TargetedExperiment</a>
, <a class="el" href="classOpenMS_1_1Instrument.html#a8ff34073a7ed3fabe3f5deff96c0282e">Instrument</a>
</li>
<li>setSolver()
: <a class="el" href="classOpenMS_1_1PSProteinInference.html#ab27586cdb7a46ebbb7f2e8f5cc8c5677">PSProteinInference</a>
, <a class="el" href="classOpenMS_1_1LPWrapper.html#a875c0b7d0fa7a596deb25399f97f1c05">LPWrapper</a>
</li>
<li>setSourceClassification()
: <a class="el" href="classOpenMS_1_1ResidueModification.html#abfc354453a404cedf40801ab1d9a077a">ResidueModification</a>
</li>
<li>setSourceFeatureIndex()
: <a class="el" href="classOpenMS_1_1AccurateMassSearchResult.html#a3944a6abc6e544fc51028e3427c4f78b">AccurateMassSearchResult</a>
</li>
<li>setSourceFile()
: <a class="el" href="classOpenMS_1_1SpectrumSettings.html#a8c115a86d9d95ea2b664bd4ba4a45af4">SpectrumSettings</a>
, <a class="el" href="classOpenMS_1_1ChromatogramSettings.html#a8c115a86d9d95ea2b664bd4ba4a45af4">ChromatogramSettings</a>
</li>
<li>setSourceFiles()
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#adc78c538c853e1c54b13a9ea6fce859b">TargetedExperiment</a>
, <a class="el" href="classOpenMS_1_1ExperimentalSettings.html#adc78c538c853e1c54b13a9ea6fce859b">ExperimentalSettings</a>
</li>
<li>setSourceOutParam()
: <a class="el" href="classOpenMS_1_1TOPPASEdge.html#ada0a542cf253053e8e0e84691bb913e6">TOPPASEdge</a>
</li>
<li>setSourceVertex()
: <a class="el" href="classOpenMS_1_1TOPPASEdge.html#a995a4fe360f02cb79540486e10067a01">TOPPASEdge</a>
</li>
<li>setSpacing()
: <a class="el" href="classOpenMS_1_1ContinuousWaveletTransform.html#a5c8d546ef78c8ecf563dbd550d97ed06">ContinuousWaveletTransform</a>
</li>
<li>setSpecificity()
: <a class="el" href="classOpenMS_1_1EnzymaticDigestion.html#acf2e52de630367c50bb14cfbb6e7f5f5">EnzymaticDigestion</a>
</li>
<li>setSpecificityType()
: <a class="el" href="classOpenMS_1_1Modification.html#a7a0ebaba908900aeb0423d6de1090df0">Modification</a>
</li>
<li>setSpecRef()
: <a class="el" href="classOpenMS_1_1MzTabSpectraRef.html#a75459cf511ee07b3e039ed62194e8373">MzTabSpectraRef</a>
</li>
<li>setSpecRefFile()
: <a class="el" href="classOpenMS_1_1MzTabSpectraRef.html#ad173c1a6d1b53aaec5ada7b0385d4d15">MzTabSpectraRef</a>
</li>
<li>setSpectra()
: <a class="el" href="classOpenMS_1_1InspectInfile.html#a52b7e50af7eea1c341385e2fabee9f94">InspectInfile</a>
, <a class="el" href="classOpenMS_1_1MSExperiment.html#a41f3cfaba60bdd362dc5f4c0494e0a23">MSExperiment&lt; PeakT, ChromatogramPeakT &gt;</a>
</li>
<li>setSpectrum()
: <a class="el" href="classOpenMS_1_1FastaIteratorIntern.html#ad8afbc78c6c6e4e0000d7b667751bac9">FastaIteratorIntern</a>
, <a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html#abed3a62ee31d0d1add508b20d932fae5">EdwardsLippertIterator</a>
, <a class="el" href="classOpenMS_1_1PepIterator.html#aa3d9038f341c4e7693684bc4608d6ed4">PepIterator</a>
, <a class="el" href="classOpenMS_1_1TrypticIterator.html#ad8afbc78c6c6e4e0000d7b667751bac9">TrypticIterator</a>
, <a class="el" href="classOpenMS_1_1FastaIterator.html#ad8afbc78c6c6e4e0000d7b667751bac9">FastaIterator</a>
</li>
<li>setSpectrumIdentifications()
: <a class="el" href="classOpenMS_1_1Identification.html#a67fd0dd18bc354e4fa722fd59485342e">Identification</a>
</li>
<li>setSpectrumWidget()
: <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#a0bb7178358018eb74b80094cf2265d38">SpectrumCanvas</a>
</li>
<li>setStandardEnzymeInfo_()
: <a class="el" href="classOpenMS_1_1SequestInfile.html#ab2027df16dc66ff4cb3ff028d6b6e525">SequestInfile</a>
</li>
<li>setStart()
: <a class="el" href="classOpenMS_1_1PeptideEvidence.html#aca15fe7dfc3c2e521ddb348962d0cccb">PeptideEvidence</a>
</li>
<li>setStartPoint()
: <a class="el" href="classOpenMS_1_1Annotation1DDistanceItem.html#ac14be6da0e5bb70f2a375472c623821d">Annotation1DDistanceItem</a>
</li>
<li>setState()
: <a class="el" href="classOpenMS_1_1Sample.html#a7d07dcbe1843e1a8adf9045aded4de45">Sample</a>
</li>
<li>setStatus()
: <a class="el" href="classOpenMS_1_1MetaDataBrowser.html#ae01cf57fff6689598b1376033d0854b8">MetaDataBrowser</a>
</li>
<li>setStrictFlag()
: <a class="el" href="classOpenMS_1_1MRMFeatureFinderScoring.html#a9ac530b577855511cc32791aef8de7e4">MRMFeatureFinderScoring</a>
</li>
<li>setStringSequence()
: <a class="el" href="classOpenMS_1_1AASequence.html#aa086feaf21dd7761b4027fe47c11d126">AASequence</a>
</li>
<li>setSubordinates()
: <a class="el" href="classOpenMS_1_1Feature.html#a808a343a668ea12688cd3dc4230ccafe">Feature</a>
</li>
<li>setSubsamples()
: <a class="el" href="classOpenMS_1_1Sample.html#aff4afef76913eb08052da436e1ce4712">Sample</a>
</li>
<li>setSum()
: <a class="el" href="classOpenMS_1_1Math_1_1BasicStatistics.html#abaa46f1e8f9288b30033bf893233d801">BasicStatistics&lt; RealT &gt;</a>
</li>
<li>setSwappedAxis()
: <a class="el" href="classOpenMS_1_1Spectrum1DCanvas.html#a0699b155f463d58c8cee6fde1865000f">Spectrum1DCanvas</a>
</li>
<li>setSymbol()
: <a class="el" href="classOpenMS_1_1Element.html#aa6ad3294100097cdfcd2ee2976516319">Element</a>
</li>
<li>setSynonyms()
: <a class="el" href="classOpenMS_1_1ResidueModification.html#a6581daf925ab23a84f30191fefe03090">ResidueModification</a>
, <a class="el" href="classOpenMS_1_1Residue.html#a6581daf925ab23a84f30191fefe03090">Residue</a>
</li>
<li>setTableSteps()
: <a class="el" href="classOpenMS_1_1IsotopeWavelet.html#a86531151b2eac5c552ae911a06dfa832">IsotopeWavelet</a>
</li>
<li>setTabWidth()
: <a class="el" href="classOpenMS_1_1FuzzyStringComparator.html#a3a87258e4788693cf5d71d5a486e1eca">FuzzyStringComparator</a>
</li>
<li>setTag()
: <a class="el" href="classOpenMS_1_1Internal_1_1SemanticValidator.html#a91044149834cf325bec3c1d1d37c010e">SemanticValidator</a>
</li>
<li>setTagCount()
: <a class="el" href="classOpenMS_1_1InspectInfile.html#a9ff3ca43d99d7d0d990178f9d9050f7d">InspectInfile</a>
</li>
<li>setTags()
: <a class="el" href="classOpenMS_1_1SuffixArrayTrypticCompressed.html#a516052dbb7b4b3769779821175153957">SuffixArrayTrypticCompressed</a>
, <a class="el" href="classOpenMS_1_1SuffixArray.html#af1b40afd1ef4b811c37612cd4ced7d8e">SuffixArray</a>
, <a class="el" href="classOpenMS_1_1SuffixArrayPeptideFinder.html#a516052dbb7b4b3769779821175153957">SuffixArrayPeptideFinder</a>
, <a class="el" href="classOpenMS_1_1SuffixArraySeqan.html#a89089f1b7138b71dfa5096c51367632b">SuffixArraySeqan</a>
</li>
<li>setTargetCVTerms()
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#a6153173d7fa80eff65e7940c97c9e0e7">TargetedExperiment</a>
</li>
<li>setTargetInParam()
: <a class="el" href="classOpenMS_1_1TOPPASEdge.html#ac004423c635783a2ef3942d3903d12ff">TOPPASEdge</a>
</li>
<li>setTargetMetaValue()
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#a738f8ae2135300f8f86bf1035d3d3842">TargetedExperiment</a>
</li>
<li>setTargetVertex()
: <a class="el" href="classOpenMS_1_1TOPPASEdge.html#aa1e3b0a77b50a81c2aad7e66b73de802">TOPPASEdge</a>
</li>
<li>setTaxon()
: <a class="el" href="classOpenMS_1_1XTandemInfile.html#a36329661545c53f1859bb13df05864f0">XTandemInfile</a>
</li>
<li>setTaxonomy()
: <a class="el" href="classOpenMS_1_1MascotInfile.html#aa6e2be4fae20616100001a178a2d0a95">MascotInfile</a>
</li>
<li>setTaxonomyFilename()
: <a class="el" href="classOpenMS_1_1XTandemInfile.html#a09426646959d95ae28bab2093fdfb4d7">XTandemInfile</a>
</li>
<li>setTemperature()
: <a class="el" href="classOpenMS_1_1HPLC.html#aab75be2824284bd809e55e307f39bfa0">HPLC</a>
, <a class="el" href="classOpenMS_1_1Digestion.html#a8a88a4ea71244835f9f302f327741872">Digestion</a>
</li>
<li>setTermName()
: <a class="el" href="classOpenMS_1_1CVMappingTerm.html#a2c8fb2bf72415842cd61bfa69899a32b">CVMappingTerm</a>
</li>
<li>setTermSpecificity()
: <a class="el" href="classOpenMS_1_1ModificationDefinition.html#a720c102e0328ce3116a6108a867ff9cf">ModificationDefinition</a>
, <a class="el" href="classOpenMS_1_1ResidueModification.html#a6dcec3133db148f873d3f6954a36d185">ResidueModification</a>
</li>
<li>setText()
: <a class="el" href="classOpenMS_1_1Annotation1DItem.html#a02afb4d423475b9587fbe642e77bce5d">Annotation1DItem</a>
</li>
<li>setTheta()
: <a class="el" href="classOpenMS_1_1Deisotoper.html#a9da659103e71b649b8a26cee0ef7e989">Deisotoper</a>
</li>
<li>setThreeLetterCode()
: <a class="el" href="classOpenMS_1_1Residue.html#ac8842c2be0848d2eb05f5438e32db3df">Residue</a>
</li>
<li>setThreshold()
: <a class="el" href="classOpenMS_1_1ClusterHierarchical.html#a778d694897c4eeb0687713ef07a4e36e">ClusterHierarchical</a>
</li>
<li>setTickLevel()
: <a class="el" href="classOpenMS_1_1AxisWidget.html#a18658ecdafe5856f71e52e54d4bc466f">AxisWidget</a>
</li>
<li>setTicks()
: <a class="el" href="classOpenMS_1_1Annotation1DDistanceItem.html#aad99fd2af10cca1130352afc963b6ccd">Annotation1DDistanceItem</a>
</li>
<li>setTime()
: <a class="el" href="classOpenMS_1_1DateTime.html#aeedb3f2f69b985bc80e3ac56674e5adf">DateTime</a>
</li>
<li>setTimeArray()
: <a class="el" href="structOpenSwath_1_1Chromatogram.html#a387683e6f5ed3edf848b31849e5e5b73">Chromatogram</a>
</li>
<li>setTOFTotalPathLength()
: <a class="el" href="classOpenMS_1_1MassAnalyzer.html#a695379d31d23162e1a471951b21e6ba6">MassAnalyzer</a>
</li>
<li>setTolerance()
: <a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html#a0b331f554495174d4e957af367a22425">EdwardsLippertIterator</a>
, <a class="el" href="classOpenMS_1_1PepIterator.html#a398690ada878a7dc5e01d57929ef2363">PepIterator</a>
, <a class="el" href="classOpenMS_1_1TrypticIterator.html#ac9938ec54ef18bdf4bf4c301ec658546">TrypticIterator</a>
, <a class="el" href="classOpenMS_1_1SuffixArray.html#a398690ada878a7dc5e01d57929ef2363">SuffixArray</a>
, <a class="el" href="classOpenMS_1_1SuffixArrayPeptideFinder.html#a3876c1a05342180cf155b3ec0f3c759b">SuffixArrayPeptideFinder</a>
, <a class="el" href="classOpenMS_1_1SuffixArraySeqan.html#a946a09425e78f45c9cc2b921d72e8409">SuffixArraySeqan</a>
, <a class="el" href="classOpenMS_1_1SuffixArrayTrypticCompressed.html#a946a09425e78f45c9cc2b921d72e8409">SuffixArrayTrypticCompressed</a>
, <a class="el" href="classOpenMS_1_1FastaIteratorIntern.html#ac9938ec54ef18bdf4bf4c301ec658546">FastaIteratorIntern</a>
, <a class="el" href="classOpenMS_1_1FastaIterator.html#ac9938ec54ef18bdf4bf4c301ec658546">FastaIterator</a>
</li>
<li>setTool_()
: <a class="el" href="classOpenMS_1_1ToolsDialog.html#acd9109ab4384d5e0f17e096ec67fb001">ToolsDialog</a>
</li>
<li>setToolDescriptions()
: <a class="el" href="classOpenMS_1_1Internal_1_1ToolDescriptionHandler.html#ad73b4b9408d3c0814b83ae712aa03500">ToolDescriptionHandler</a>
</li>
<li>setTopoNr()
: <a class="el" href="classOpenMS_1_1TOPPASToolVertex.html#a7e6e4c67816e2c21906be2e1dbc04888">TOPPASToolVertex</a>
, <a class="el" href="classOpenMS_1_1TOPPASVertex.html#a7e6e4c67816e2c21906be2e1dbc04888">TOPPASVertex</a>
, <a class="el" href="classOpenMS_1_1TOPPASOutputFileListVertex.html#a7e6e4c67816e2c21906be2e1dbc04888">TOPPASOutputFileListVertex</a>
</li>
<li>setTopoSortMarked()
: <a class="el" href="classOpenMS_1_1TOPPASVertex.html#a9038523e43dcd0d408885a541c328b87">TOPPASVertex</a>
</li>
<li>setToString()
: <a class="el" href="structOpenMS_1_1FuzzyStringComparator_1_1InputLine.html#a9cae8753754d2caaffff63fe15e6762c">FuzzyStringComparator::InputLine</a>
</li>
<li>setTrainingEmissionProbability()
: <a class="el" href="classOpenMS_1_1HiddenMarkovModel.html#a6a93f6f750322a4e89aed0609e58a782">HiddenMarkovModel</a>
</li>
<li>setTrainingEmissionProbability_()
: <a class="el" href="classOpenMS_1_1HiddenMarkovModel.html#a73226b39ba3264253d39093d3e0dcec3">HiddenMarkovModel</a>
</li>
<li>setTrainingSample()
: <a class="el" href="classOpenMS_1_1SVMWrapper.html#aaa1ad44e104f1e8446306155a634bc17">SVMWrapper</a>
</li>
<li>setTransIntensity()
: <a class="el" href="classOpenMS_1_1IsotopeWaveletTransform_1_1TransSpectrum.html#a388d3f21c5c30e6d755c384aa5351e58">IsotopeWaveletTransform&lt; PeakType &gt;::TransSpectrum</a>
</li>
<li>setTransitionGroupID()
: <a class="el" href="classOpenMS_1_1MRMTransitionGroup.html#ad5e3b3cdeb8821cc6cd95452ce998604">MRMTransitionGroup&lt; SpectrumType, TransitionType &gt;</a>
</li>
<li>setTransitionProbability()
: <a class="el" href="classOpenMS_1_1HiddenMarkovModel.html#ab62e220104bf63dcfeb5e8f1472c28a0">HiddenMarkovModel</a>
</li>
<li>setTransitionProbability_()
: <a class="el" href="classOpenMS_1_1HiddenMarkovModel.html#a8b240da482d3517d7bd8fd44c92d7bb1">HiddenMarkovModel</a>
</li>
<li>setTransitions()
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#a5dc11ac8bfaedaa86114efc3f2180e3b">TargetedExperiment</a>
</li>
<li>setTranslationTableRef()
: <a class="el" href="classOpenMS_1_1PeptideEvidence.html#aa3dd66ca78fc952a70910974d022a2e9">PeptideEvidence</a>
</li>
<li>setType()
: <a class="el" href="classOpenMS_1_1IonDetector.html#a608e58a2f9fb7e497f91662a6e9ae4cc">IonDetector</a>
, <a class="el" href="classOpenMS_1_1SpectrumSettings.html#a7fd9d42016cc77134a5a518fc0478add">SpectrumSettings</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1ListEditorDelegate.html#a2f64292758705453c4a596a8df74bb5d">ListEditorDelegate</a>
, <a class="el" href="classOpenMS_1_1MassAnalyzer.html#aef26ae8a53a25dd2da573e980e8a5568">MassAnalyzer</a>
</li>
<li>setTypeName()
: <a class="el" href="classOpenMS_1_1ListEditor.html#a053fb6c9920155e7f4de647ca217d496">ListEditor</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1ListEditorDelegate.html#a053fb6c9920155e7f4de647ca217d496">ListEditorDelegate</a>
</li>
<li>setUnassignedPeptideIdentifications()
: <a class="el" href="classOpenMS_1_1ConsensusMap.html#a37631ce8db66a5227a34ae2e40b22b8b">ConsensusMap</a>
, <a class="el" href="classOpenMS_1_1FeatureMap.html#a37631ce8db66a5227a34ae2e40b22b8b">FeatureMap&lt; FeatureT &gt;</a>
</li>
<li>setUniModAccession()
: <a class="el" href="classOpenMS_1_1ResidueModification.html#aab1c5e671155fbcea83c73dd84c75701">ResidueModification</a>
</li>
<li>setUniqueId()
: <a class="el" href="classOpenMS_1_1UniqueIdInterface.html#a9c908a735f82adb8f66a326547a9acf8">UniqueIdInterface</a>
</li>
<li>setUnit()
: <a class="el" href="classOpenMS_1_1DataValue.html#a1ade56fdfbde5b31702cfbbab985f619">DataValue</a>
, <a class="el" href="classOpenMS_1_1MetaInfoRegistry.html#a6b62b8a3915419ed684aa527d2c0358a">MetaInfoRegistry</a>
, <a class="el" href="classOpenMS_1_1CVTerm.html#a1c667f054689837033d799fd84189748">CVTerm</a>
</li>
<li>setUnitAccessionAttribute()
: <a class="el" href="classOpenMS_1_1Internal_1_1SemanticValidator.html#a7774a1c06640f48a9a026ca048b533e3">SemanticValidator</a>
</li>
<li>setUnitNameAttribute()
: <a class="el" href="classOpenMS_1_1Internal_1_1SemanticValidator.html#a2aae88518a16e37b73831269e3b60216">SemanticValidator</a>
</li>
<li>setUpHook()
: <a class="el" href="classOpenMS_1_1BaseLabeler.html#a0bac562e2949aa9f0b345ab5d9f5d7bd">BaseLabeler</a>
, <a class="el" href="classOpenMS_1_1ICPLLabeler.html#ab453c939cb92ff888c53f5e6de3b4a69">ICPLLabeler</a>
, <a class="el" href="classOpenMS_1_1ITRAQLabeler.html#ab453c939cb92ff888c53f5e6de3b4a69">ITRAQLabeler</a>
, <a class="el" href="classOpenMS_1_1O18Labeler.html#ab453c939cb92ff888c53f5e6de3b4a69">O18Labeler</a>
, <a class="el" href="classOpenMS_1_1SILACLabeler.html#ab453c939cb92ff888c53f5e6de3b4a69">SILACLabeler</a>
, <a class="el" href="classOpenMS_1_1LabelFreeLabeler.html#ab453c939cb92ff888c53f5e6de3b4a69">LabelFreeLabeler</a>
</li>
<li>setURL()
: <a class="el" href="classOpenMS_1_1ContactPerson.html#ac24faf826800a384e1103c0c5a728eaf">ContactPerson</a>
</li>
<li>setUseTags()
: <a class="el" href="classOpenMS_1_1SuffixArray.html#a10824f8f112c42e00795592f7ddba6b3">SuffixArray</a>
, <a class="el" href="classOpenMS_1_1SuffixArrayPeptideFinder.html#ab2650d016b9e7eaf4574d44817868f3d">SuffixArrayPeptideFinder</a>
, <a class="el" href="classOpenMS_1_1SuffixArraySeqan.html#ab2650d016b9e7eaf4574d44817868f3d">SuffixArraySeqan</a>
, <a class="el" href="classOpenMS_1_1SuffixArrayTrypticCompressed.html#ab2650d016b9e7eaf4574d44817868f3d">SuffixArrayTrypticCompressed</a>
</li>
<li>setUseTerm()
: <a class="el" href="classOpenMS_1_1CVMappingTerm.html#a9c9c17baa8473b3f80d55cec3a691336">CVMappingTerm</a>
</li>
<li>setUseTermName()
: <a class="el" href="classOpenMS_1_1CVMappingTerm.html#a1d6e4f8df8885a2eaf0069c64795a76e">CVMappingTerm</a>
</li>
<li>setValidFormats_()
: <a class="el" href="classOpenMS_1_1TOPPBase.html#a505102880fe265ea8560ee9136e76fc0">TOPPBase</a>
</li>
<li>setValidStrings()
: <a class="el" href="classOpenMS_1_1Param.html#a10933782584a46cded91c40574027ee2">Param</a>
</li>
<li>setValidStrings_()
: <a class="el" href="classOpenMS_1_1TOPPBase.html#a85b8cf00b055fed0dca275fa28c87387">TOPPBase</a>
</li>
<li>setValue()
: <a class="el" href="classOpenMS_1_1DistanceMatrix.html#a2e841e704b21daa5788812746ee1cf7e">DistanceMatrix&lt; Value &gt;</a>
, <a class="el" href="classOpenMS_1_1Matrix.html#acea12a59f1afb620887946a432676603">Matrix&lt; Value &gt;</a>
, <a class="el" href="classOpenMS_1_1Param.html#a432099944e11263aa20aaf8ea1389790">Param</a>
, <a class="el" href="classOpenMS_1_1CVTerm.html#a7dde7207ed2319ec8f6553a2e78f6d01">CVTerm</a>
, <a class="el" href="classOpenMS_1_1MetaInfo.html#abb7cdabed75dfe4317d39b7b908e2ae3">MetaInfo</a>
, <a class="el" href="classOpenMS_1_1MzTabParameter.html#aef1e1f38648d5e20cd0dd4e5b3338a86">MzTabParameter</a>
</li>
<li>setValueAttribute()
: <a class="el" href="classOpenMS_1_1Internal_1_1SemanticValidator.html#a3bdbe30a105757f23be3e1a80f5d8d8c">SemanticValidator</a>
</li>
<li>setValueQuick()
: <a class="el" href="classOpenMS_1_1DistanceMatrix.html#a742fc7b1066ade8d0ba632ceec223c59">DistanceMatrix&lt; Value &gt;</a>
</li>
<li>setVariableModifications()
: <a class="el" href="classOpenMS_1_1HiddenMarkovModel.html#af6c524584f7abef2890726aa6b2f31ef">HiddenMarkovModel</a>
, <a class="el" href="classOpenMS_1_1MascotInfile.html#a7e6cbbced07f01d324cb33bbc0f7c7a6">MascotInfile</a>
</li>
<li>setVariance()
: <a class="el" href="classOpenMS_1_1Math_1_1BasicStatistics.html#afd3885a9a6ee86d7faa4fd136072d842">BasicStatistics&lt; RealT &gt;</a>
</li>
<li>setVariant()
: <a class="el" href="classOpenMS_1_1Tagging.html#a9b8a57a846b712b18a877d7e5a8253b4">Tagging</a>
</li>
<li>setVendor()
: <a class="el" href="classOpenMS_1_1Instrument.html#ad841317da64b0da46a6bea90696d3ec6">Instrument</a>
</li>
<li>setVerboseLevel()
: <a class="el" href="classOpenMS_1_1FuzzyStringComparator.html#a88a6e44ab5a2a7544036c831e8acebdf">FuzzyStringComparator</a>
</li>
<li>setVersion()
: <a class="el" href="classOpenMS_1_1Software.html#af9810188aa685015e084d147d439aa8a">Software</a>
</li>
<li>setVisibleArea()
: <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#a1423006abf520c8a4183efb19822cfc0">SpectrumCanvas</a>
, <a class="el" href="classOpenMS_1_1Spectrum1DCanvas.html#afd3afc02ff0d8f3fa0cd35ec8116a537">Spectrum1DCanvas</a>
, <a class="el" href="classOpenMS_1_1IDEvaluationBase.html#a5322adaaf3899905a4f19afa516e0c0c">IDEvaluationBase</a>
</li>
<li>setVisibleArea1D()
: <a class="el" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#ab45b87d30b12aec08e443804ec761d1a">TOPPViewIdentificationViewBehavior</a>
</li>
<li>setVolume()
: <a class="el" href="classOpenMS_1_1Sample.html#a9744477aea1cfed555bf84a400d5dfe9">Sample</a>
</li>
<li>setWavelet()
: <a class="el" href="classOpenMS_1_1ContinuousWaveletTransform.html#ac194ccb5bf571306aeb57ae56cb7615f">ContinuousWaveletTransform</a>
</li>
<li>setWeightMode()
: <a class="el" href="classOpenMS_1_1WeightWrapper.html#a86f49dcf25cd06d439db0390ae5604b5">WeightWrapper</a>
</li>
<li>setWeights()
: <a class="el" href="classOpenMS_1_1SVMWrapper.html#ac94ef131792dc0f0625a16f9c5a64b8a">SVMWrapper</a>
</li>
<li>setWhitelist()
: <a class="el" href="classOpenMS_1_1FuzzyStringComparator.html#a20974f9ea1dfa9156fdde6968eccdc6b">FuzzyStringComparator</a>
</li>
<li>setWidth()
: <a class="el" href="classOpenMS_1_1CentroidData.html#a8197f8311c927fe9c0136f225ad9b331">CentroidData</a>
, <a class="el" href="classOpenMS_1_1FeatureHandle.html#a6402653308a8771c184aa3b014e7cea1">FeatureHandle</a>
, <a class="el" href="classOpenMS_1_1BaseFeature.html#a908f7d0328c34d70706d48af082d4751">BaseFeature</a>
</li>
<li>setWindowId()
: <a class="el" href="classOpenMS_1_1SpectrumWidget.html#a52ff18b3e029737abdca75e530982635">SpectrumWidget</a>
, <a class="el" href="classOpenMS_1_1EnhancedTabBarWidgetInterface.html#a01cf728d0825a810177d20a035380dc2">EnhancedTabBarWidgetInterface</a>
, <a class="el" href="classOpenMS_1_1TOPPASWidget.html#a94605f68bf4fd4888fbfae07f23af5af">TOPPASWidget</a>
</li>
<li>setWriteSupplementalData()
: <a class="el" href="classOpenMS_1_1PeakFileOptions.html#aa91d8caf33df716b0cc188b42178483e">PeakFileOptions</a>
</li>
<li>setX()
: <a class="el" href="classOpenMS_1_1DPosition.html#a7682888cd6f2b9f849548fb952307011">DPosition&lt; D, TCoordinateType &gt;</a>
</li>
<li>setY()
: <a class="el" href="classOpenMS_1_1DPosition.html#af9bb559c966c59f89d73b704d05592ad">DPosition&lt; D, TCoordinateType &gt;</a>
</li>
<li>setZoomScan()
: <a class="el" href="classOpenMS_1_1InstrumentSettings.html#a71de61b67afb629b55d610f58bebb554">InstrumentSettings</a>
</li>
<li>shape()
: <a class="el" href="classOpenMS_1_1TOPPASToolVertex.html#a97d77c23d8971d0d2925ed0eb996cab5">TOPPASToolVertex</a>
, <a class="el" href="classOpenMS_1_1TOPPASEdge.html#a6e4b5bc28b84f0ec515bb76daba69390">TOPPASEdge</a>
, <a class="el" href="classOpenMS_1_1TOPPASOutputFileListVertex.html#a97d77c23d8971d0d2925ed0eb996cab5">TOPPASOutputFileListVertex</a>
, <a class="el" href="classOpenMS_1_1TOPPASInputFileListVertex.html#a97d77c23d8971d0d2925ed0eb996cab5">TOPPASInputFileListVertex</a>
, <a class="el" href="classOpenMS_1_1TOPPASMergerVertex.html#a97d77c23d8971d0d2925ed0eb996cab5">TOPPASMergerVertex</a>
, <a class="el" href="classOpenMS_1_1TOPPASVertex.html#a736e1adc12e73d709b663690a1706baa">TOPPASVertex</a>
</li>
<li>SHFeature()
: <a class="el" href="classOpenMS_1_1SHFeature.html#a7a89884b3c9132f0be5a84a0cf13fccc">SHFeature</a>
</li>
<li>shiftDown_()
: <a class="el" href="classOpenMS_1_1PrecursorIonSelection.html#af24d8073d250328ea7b8b7fcd66258c1">PrecursorIonSelection</a>
</li>
<li>shiftUp_()
: <a class="el" href="classOpenMS_1_1PrecursorIonSelection.html#a624fa4337b310adc1d7b5a2cd046284b">PrecursorIonSelection</a>
</li>
<li>shortDimensionName()
: <a class="el" href="classOpenMS_1_1Peak2D.html#adb828827a83ef9f2b73c77346ca27dba">Peak2D</a>
</li>
<li>shortDimensionNameMZ()
: <a class="el" href="classOpenMS_1_1Peak2D.html#a6745a6b01fdcaf438b8f69c71845020b">Peak2D</a>
</li>
<li>shortDimensionNameRT()
: <a class="el" href="classOpenMS_1_1Peak2D.html#af27c4dcca724c063cdccd1dd6308e952">Peak2D</a>
</li>
<li>shortDimensionUnit()
: <a class="el" href="classOpenMS_1_1Peak2D.html#aa5f96de3775a77aa057ecdd68cded758">Peak2D</a>
</li>
<li>shortDimensionUnitMZ()
: <a class="el" href="classOpenMS_1_1Peak2D.html#a65bfb527a47669e5c0390bdd9f8c8fdc">Peak2D</a>
</li>
<li>shortDimensionUnitRT()
: <a class="el" href="classOpenMS_1_1Peak2D.html#a56189f6951fd5fac3ba107aee25fb3ee">Peak2D</a>
</li>
<li>show_info()
: <a class="el" href="classOpenMS_1_1CentroidPeak.html#a2e9d48057a35df4e7a2b7403186000b6">CentroidPeak</a>
, <a class="el" href="classOpenMS_1_1LCElutionPeak.html#a2e9d48057a35df4e7a2b7403186000b6">LCElutionPeak</a>
, <a class="el" href="classOpenMS_1_1LCMS.html#a2e9d48057a35df4e7a2b7403186000b6">LCMS</a>
, <a class="el" href="classOpenMS_1_1DeconvPeak.html#a2e9d48057a35df4e7a2b7403186000b6">DeconvPeak</a>
, <a class="el" href="classOpenMS_1_1MS2Feature.html#a2e9d48057a35df4e7a2b7403186000b6">MS2Feature</a>
, <a class="el" href="classOpenMS_1_1MS2Info.html#a2e9d48057a35df4e7a2b7403186000b6">MS2Info</a>
, <a class="el" href="classOpenMS_1_1SHFeature.html#a2e9d48057a35df4e7a2b7403186000b6">SHFeature</a>
, <a class="el" href="classOpenMS_1_1MSPeak.html#a2e9d48057a35df4e7a2b7403186000b6">MSPeak</a>
, <a class="el" href="classOpenMS_1_1MS2Fragment.html#a2e9d48057a35df4e7a2b7403186000b6">MS2Fragment</a>
, <a class="el" href="classOpenMS_1_1MS2ConsensusSpectrum.html#a2e9d48057a35df4e7a2b7403186000b6">MS2ConsensusSpectrum</a>
</li>
<li>showAboutDialog()
: <a class="el" href="classOpenMS_1_1TOPPViewBase.html#ac63a90a3b880d5e9cfd47b54b336be8b">TOPPViewBase</a>
, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ac63a90a3b880d5e9cfd47b54b336be8b">TOPPASBase</a>
, <a class="el" href="classOpenMS_1_1IDEvaluationBase.html#ac63a90a3b880d5e9cfd47b54b336be8b">IDEvaluationBase</a>
</li>
<li>showAllHits_()
: <a class="el" href="classOpenMS_1_1MetaDataBrowser.html#a765a75be7664b0e7b5a6d12d42507f69">MetaDataBrowser</a>
</li>
<li>showAsWindow_()
: <a class="el" href="classOpenMS_1_1TOPPASBase.html#a49eff2b09cb070797e67ed81eb0581d4">TOPPASBase</a>
</li>
<li>showContextMenu()
: <a class="el" href="classOpenMS_1_1HistogramWidget.html#a1661e21f97257ef10151129365344144">HistogramWidget</a>
</li>
<li>showCurrentLayerPreferences()
: <a class="el" href="classOpenMS_1_1Spectrum2DCanvas.html#ad30005d9449df4ee67471cf4d18b2e3a">Spectrum2DCanvas</a>
, <a class="el" href="classOpenMS_1_1Spectrum1DCanvas.html#ad30005d9449df4ee67471cf4d18b2e3a">Spectrum1DCanvas</a>
, <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#ad22ed683f4719f91473fe5b973decd9d">SpectrumCanvas</a>
, <a class="el" href="classOpenMS_1_1Spectrum3DCanvas.html#ad30005d9449df4ee67471cf4d18b2e3a">Spectrum3DCanvas</a>
</li>
<li>showCurrentPeaksAs2D()
: <a class="el" href="classOpenMS_1_1Spectrum1DCanvas.html#a6abb761ac7b48849da419282e0665101">Spectrum1DCanvas</a>
, <a class="el" href="classOpenMS_1_1Spectrum3DCanvas.html#a6abb761ac7b48849da419282e0665101">Spectrum3DCanvas</a>
, <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a6abb761ac7b48849da419282e0665101">TOPPViewBase</a>
, <a class="el" href="classOpenMS_1_1Spectrum3DWidget.html#a6abb761ac7b48849da419282e0665101">Spectrum3DWidget</a>
, <a class="el" href="classOpenMS_1_1Spectrum1DWidget.html#a6abb761ac7b48849da419282e0665101">Spectrum1DWidget</a>
</li>
<li>showCurrentPeaksAs3D()
: <a class="el" href="classOpenMS_1_1TOPPViewBase.html#ac0415c7eaab77c3de0f2ffac0640aa9e">TOPPViewBase</a>
, <a class="el" href="classOpenMS_1_1Spectrum2DWidget.html#ac0415c7eaab77c3de0f2ffac0640aa9e">Spectrum2DWidget</a>
, <a class="el" href="classOpenMS_1_1Spectrum2DCanvas.html#ac0415c7eaab77c3de0f2ffac0640aa9e">Spectrum2DCanvas</a>
, <a class="el" href="classOpenMS_1_1Spectrum1DWidget.html#ac0415c7eaab77c3de0f2ffac0640aa9e">Spectrum1DWidget</a>
, <a class="el" href="classOpenMS_1_1Spectrum1DCanvas.html#ac0415c7eaab77c3de0f2ffac0640aa9e">Spectrum1DCanvas</a>
</li>
<li>showCursorStatus()
: <a class="el" href="classOpenMS_1_1TOPPASBase.html#a1f3f64de44f2621ed554af31b78c20de">TOPPASBase</a>
, <a class="el" href="classOpenMS_1_1TOPPViewBase.html#abe50d47cebeb118904368e9143027f95">TOPPViewBase</a>
</li>
<li>showCursorStatusInvert()
: <a class="el" href="classOpenMS_1_1TOPPViewBase.html#adfaeb1eec8c29c065490dbc37079c3f8">TOPPViewBase</a>
</li>
<li>showDetails_()
: <a class="el" href="classOpenMS_1_1MetaDataBrowser.html#abdbba553d0a6411830a2ff3dd576bd2b">MetaDataBrowser</a>
</li>
<li>showDistribution_()
: <a class="el" href="classOpenMS_1_1LayerStatisticsDialog.html#a244bd55de362d7452266608613bb0608">LayerStatisticsDialog</a>
</li>
<li>showDocumentation()
: <a class="el" href="classOpenMS_1_1ParamEditor.html#a3b1e4a79c48fce89276e5a5efa4d6e4f">ParamEditor</a>
</li>
<li>showFileDialog()
: <a class="el" href="classOpenMS_1_1TOPPASInputFilesDialog.html#a9c825130307fe9747e7e466ef02de30e">TOPPASInputFilesDialog</a>
, <a class="el" href="classOpenMS_1_1TOPPASOutputFilesDialog.html#a9c825130307fe9747e7e466ef02de30e">TOPPASOutputFilesDialog</a>
, <a class="el" href="classOpenMS_1_1TOPPASInputFileDialog.html#a9c825130307fe9747e7e466ef02de30e">TOPPASInputFileDialog</a>
</li>
<li>showFilesDialog()
: <a class="el" href="classOpenMS_1_1TOPPASInputFileListVertex.html#a9a049cc3c3629360ef7e4fd53a8ec518">TOPPASInputFileListVertex</a>
</li>
<li>showGoToDialog()
: <a class="el" href="classOpenMS_1_1Spectrum1DWidget.html#a5bded2b0318baf0e29ed8cf8a1c5ac3e">Spectrum1DWidget</a>
, <a class="el" href="classOpenMS_1_1TOPPViewBase.html#aa423dc6b9e77f5f00dd39b7176a4bcf9">TOPPViewBase</a>
, <a class="el" href="classOpenMS_1_1SpectrumWidget.html#ae89ce379294672f991850036e22106a2">SpectrumWidget</a>
, <a class="el" href="classOpenMS_1_1Spectrum3DWidget.html#a5bded2b0318baf0e29ed8cf8a1c5ac3e">Spectrum3DWidget</a>
, <a class="el" href="classOpenMS_1_1Spectrum2DWidget.html#a5bded2b0318baf0e29ed8cf8a1c5ac3e">Spectrum2DWidget</a>
</li>
<li>showGridLines()
: <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#ae625fd3d99c0ae1d83cf44a2628e3cd5">SpectrumCanvas</a>
</li>
<li>showIntensityDistribution()
: <a class="el" href="classOpenMS_1_1SpectrumWidget.html#a74e49f13cfca1dadb87ea33da7b26b4e">SpectrumWidget</a>
</li>
<li>showIOMappingDialog()
: <a class="el" href="classOpenMS_1_1TOPPASEdge.html#a15a588bca080322867ff048e95ba63ab">TOPPASEdge</a>
</li>
<li>showLegend()
: <a class="el" href="classOpenMS_1_1Spectrum1DWidget.html#a32f2d07ee975913ccaac8a5548f233c0">Spectrum1DWidget</a>
, <a class="el" href="classOpenMS_1_1AxisWidget.html#af535d1a7f4f2bd66814d975abc0f8eab">AxisWidget</a>
, <a class="el" href="classOpenMS_1_1SpectrumWidget.html#a32f2d07ee975913ccaac8a5548f233c0">SpectrumWidget</a>
, <a class="el" href="classOpenMS_1_1Spectrum3DWidget.html#a32f2d07ee975913ccaac8a5548f233c0">Spectrum3DWidget</a>
, <a class="el" href="classOpenMS_1_1Spectrum3DCanvas.html#ac126d1846cd7a28200b040f171ea5122">Spectrum3DCanvas</a>
</li>
<li>showLogMessage_()
: <a class="el" href="classOpenMS_1_1TOPPViewBase.html#abbbece6cdb8abfa381ec1c4c913b376c">TOPPViewBase</a>
, <a class="el" href="classOpenMS_1_1IDEvaluationBase.html#abbbece6cdb8abfa381ec1c4c913b376c">IDEvaluationBase</a>
, <a class="el" href="classOpenMS_1_1TOPPASBase.html#abbbece6cdb8abfa381ec1c4c913b376c">TOPPASBase</a>
</li>
<li>showMetaData()
: <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#a5f77956c91eaacf99c94fde17ec58664">SpectrumCanvas</a>
</li>
<li>showMetaDistribution()
: <a class="el" href="classOpenMS_1_1SpectrumWidget.html#af2061e55612d1889803320c58f991e12">SpectrumWidget</a>
</li>
<li>showMS2consensSpectraInfo()
: <a class="el" href="classOpenMS_1_1SHFeature.html#a7b1f77f572fd435028e3473948a74c63">SHFeature</a>
</li>
<li>showPipelineFinishedLogMessage()
: <a class="el" href="classOpenMS_1_1TOPPASBase.html#a5d8bef6119dd93d5e20252cf736e488f">TOPPASBase</a>
</li>
<li>showPreferences()
: <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a1f2c5603aeff38a56ec48e3b4c87a041">TOPPViewBase</a>
</li>
<li>showProjectionHorizontal()
: <a class="el" href="classOpenMS_1_1Spectrum2DCanvas.html#a2ffd98d87318d8f33969beb7947451d5">Spectrum2DCanvas</a>
</li>
<li>showProjectionInfo()
: <a class="el" href="classOpenMS_1_1Spectrum2DCanvas.html#aba00b4e42843a857bcbb6589c5fbbb23">Spectrum2DCanvas</a>
</li>
<li>showProjectionVertical()
: <a class="el" href="classOpenMS_1_1Spectrum2DCanvas.html#a14eaff50da795ee6f5ae07a252f6f699">Spectrum2DCanvas</a>
</li>
<li>showRange()
: <a class="el" href="classOpenMS_1_1Spectrum2DGoToDialog.html#a2891247cd2b4da105061069a1d8944fb">Spectrum2DGoToDialog</a>
</li>
<li>showSpectrumAlignmentDialog()
: <a class="el" href="classOpenMS_1_1TOPPViewBase.html#aad1e6ade02f29bf95f9a7c3861ac57ca">TOPPViewBase</a>
</li>
<li>showSpectrumAs1D()
: <a class="el" href="classOpenMS_1_1TOPPViewBase.html#ab4329b70746a9df05435cc9683a23351">TOPPViewBase</a>
, <a class="el" href="classOpenMS_1_1SpectraViewWidget.html#ad84d0ea9c6cf13ce77a3926f02ee23a0">SpectraViewWidget</a>
, <a class="el" href="classOpenMS_1_1Spectrum2DCanvas.html#ab4329b70746a9df05435cc9683a23351">Spectrum2DCanvas</a>
, <a class="el" href="classOpenMS_1_1Spectrum2DWidget.html#ab4329b70746a9df05435cc9683a23351">Spectrum2DWidget</a>
, <a class="el" href="classOpenMS_1_1TOPPViewSpectraViewBehavior.html#a660cb2a4f1f32c8bc046c9bd70e9a034">TOPPViewSpectraViewBehavior</a>
, <a class="el" href="classOpenMS_1_1Spectrum2DCanvas.html#adb1b3d81239a478f11988c1ae1a573d7">Spectrum2DCanvas</a>
, <a class="el" href="classOpenMS_1_1SpectraViewWidget.html#adb1b3d81239a478f11988c1ae1a573d7">SpectraViewWidget</a>
, <a class="el" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#a660cb2a4f1f32c8bc046c9bd70e9a034">TOPPViewIdentificationViewBehavior</a>
, <a class="el" href="classOpenMS_1_1SpectraIdentificationViewWidget.html#ad84d0ea9c6cf13ce77a3926f02ee23a0">SpectraIdentificationViewWidget</a>
, <a class="el" href="classOpenMS_1_1TOPPViewBehaviorInterface.html#a8d113e37a90360da158ddf07c7a39515">TOPPViewBehaviorInterface</a>
, <a class="el" href="classOpenMS_1_1Spectrum2DWidget.html#adb1b3d81239a478f11988c1ae1a573d7">Spectrum2DWidget</a>
</li>
<li>showSpectrumBrowser()
: <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a66bd86e9a12ef01d46f71c626d422a51">TOPPViewBase</a>
</li>
<li>showSpectrumGenerationDialog()
: <a class="el" href="classOpenMS_1_1TOPPViewBase.html#ad0c5e46e336d0faaea1ecb2a11e58cea">TOPPViewBase</a>
</li>
<li>showSpectrumMetaData()
: <a class="el" href="classOpenMS_1_1TOPPViewBase.html#aa314e7ac85cbdf66ba442124a1fd72c7">TOPPViewBase</a>
, <a class="el" href="classOpenMS_1_1SpectraViewWidget.html#a8d96dc7bc3da50248ac5e57db2328d26">SpectraViewWidget</a>
, <a class="el" href="classOpenMS_1_1SpectraIdentificationViewWidget.html#a8d96dc7bc3da50248ac5e57db2328d26">SpectraIdentificationViewWidget</a>
</li>
<li>showSpectrumWidgetInWindow()
: <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a8d50e96b84cd9c1dea5341f8aff9eeb6">TOPPViewBase</a>
</li>
<li>showSplitters()
: <a class="el" href="classOpenMS_1_1HistogramWidget.html#ab4e095b16f4d94815da603ab7a5ce1f9">HistogramWidget</a>
</li>
<li>showStatistics()
: <a class="el" href="classOpenMS_1_1SpectrumWidget.html#a0018b54386911a5e8efde28860b68472">SpectrumWidget</a>
</li>
<li>showStatusMessage()
: <a class="el" href="classOpenMS_1_1IDEvaluationBase.html#ac7fa650b55659fe58344e567b0aa6660">IDEvaluationBase</a>
, <a class="el" href="classOpenMS_1_1TOPPViewBase.html#ac7fa650b55659fe58344e567b0aa6660">TOPPViewBase</a>
, <a class="el" href="classOpenMS_1_1TOPPASBase.html#ac7fa650b55659fe58344e567b0aa6660">TOPPASBase</a>
</li>
<li>showTOPPDialog()
: <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a404da89d6f04a5809ddfaf09239e4975">TOPPViewBase</a>
</li>
<li>showTOPPDialog_()
: <a class="el" href="classOpenMS_1_1TOPPViewBase.html#a84ac8c59d495c96e543ed84e2b3cf66e">TOPPViewBase</a>
</li>
<li>showURL()
: <a class="el" href="classOpenMS_1_1TOPPASBase.html#ab15d57b00f5a06ac4a9e393036212829">TOPPASBase</a>
, <a class="el" href="classOpenMS_1_1TOPPViewBase.html#ab15d57b00f5a06ac4a9e393036212829">TOPPViewBase</a>
, <a class="el" href="classOpenMS_1_1IDEvaluationBase.html#ab15d57b00f5a06ac4a9e393036212829">IDEvaluationBase</a>
</li>
<li>shufflePeptide()
: <a class="el" href="classOpenMS_1_1MRMDecoy.html#ad121f448031c8a2d2ea44cf760d9220b">MRMDecoy</a>
</li>
<li>SignalToNoiseEstimator()
: <a class="el" href="classOpenMS_1_1SignalToNoiseEstimator.html#a655dde9d29b6569bc284bdb1adcc4f78">SignalToNoiseEstimator&lt; Container &gt;</a>
</li>
<li>SignalToNoiseEstimatorMeanIterative()
: <a class="el" href="classOpenMS_1_1SignalToNoiseEstimatorMeanIterative.html#a7ee15745386d94c8128aa10722e2b6cf">SignalToNoiseEstimatorMeanIterative&lt; Container &gt;</a>
</li>
<li>SignalToNoiseEstimatorMedian()
: <a class="el" href="classOpenMS_1_1SignalToNoiseEstimatorMedian.html#ac6be5c407bd0be34f62ea570ca9097c9">SignalToNoiseEstimatorMedian&lt; Container &gt;</a>
</li>
<li>SignalToNoiseOpenMS()
: <a class="el" href="classOpenMS_1_1SignalToNoiseOpenMS.html#a61e58ed574e6196deffeaf53220a0816">SignalToNoiseOpenMS&lt; PeakT &gt;</a>
</li>
<li>SILACAnalyzer()
: <a class="el" href="classOpenMS_1_1SILACAnalyzer.html#a3ca615fc4cf75e66d68fdb94df4b94e9">SILACAnalyzer</a>
</li>
<li>SILACClustering()
: <a class="el" href="classOpenMS_1_1SILACClustering.html#ac1346f7edcb0135605458fa3bff61142">SILACClustering</a>
</li>
<li>SILACFilter()
: <a class="el" href="classOpenMS_1_1SILACFilter.html#a802ab413ae128281db6a7d18e7c6d7c4">SILACFilter</a>
</li>
<li>SILACFiltering()
: <a class="el" href="classOpenMS_1_1SILACFiltering.html#a7b76a91368a1af54ef9e9b4e86fb19f1">SILACFiltering</a>
</li>
<li>SILACLabeler()
: <a class="el" href="classOpenMS_1_1SILACLabeler.html#aef7ab878b8be7e9bb99f1413a7468ce2">SILACLabeler</a>
</li>
<li>SILACPoint()
: <a class="el" href="classOpenMS_1_1SILACPoint.html#a07b8ef7af11b8b1820016d0a3d5ee082">SILACPoint</a>
</li>
<li>similarity_()
: <a class="el" href="classOpenMS_1_1SimplePairFinder.html#a166830903bc21b91842891590ece7776">SimplePairFinder</a>
</li>
<li>SimpleExtender()
: <a class="el" href="classOpenMS_1_1SimpleExtender.html#a5d4e59b887e694af404c49d0a684fd97">SimpleExtender&lt; PeakType, FeatureType &gt;</a>
</li>
<li>SimplePairFinder()
: <a class="el" href="classOpenMS_1_1SimplePairFinder.html#a38be7c3c67e8913b3f816056cd99cc5b">SimplePairFinder</a>
</li>
<li>SimpleSeeder()
: <a class="el" href="classOpenMS_1_1SimpleSeeder.html#a10182f992ebcabc30c6381a0ca717b0f">SimpleSeeder&lt; PeakType, FeatureType &gt;</a>
</li>
<li>simplify()
: <a class="el" href="classOpenMS_1_1String.html#a23eb8a9a84f24127e87e0fb41076254c">String</a>
</li>
<li>SimRandomNumberGenerator()
: <a class="el" href="structOpenMS_1_1SimRandomNumberGenerator.html#a22677c8c6834a881014933796a577969">SimRandomNumberGenerator</a>
</li>
<li>simulate()
: <a class="el" href="classOpenMS_1_1SvmTheoreticalSpectrumGeneratorSet.html#a5c8a302c628f40855e96653849c430e7">SvmTheoreticalSpectrumGeneratorSet</a>
, <a class="el" href="classOpenMS_1_1MSSim.html#a17ed13f970933c372d59a01d28e8f088">MSSim</a>
, <a class="el" href="classOpenMS_1_1SvmTheoreticalSpectrumGenerator.html#a5c8a302c628f40855e96653849c430e7">SvmTheoreticalSpectrumGenerator</a>
</li>
<li>simulateILPBasedIPSRun_()
: <a class="el" href="classOpenMS_1_1PrecursorIonSelection.html#a6d925990e26343cecf35b765b3ee8eda">PrecursorIonSelection</a>
</li>
<li>simulateRun()
: <a class="el" href="classOpenMS_1_1PrecursorIonSelection.html#a990b40a17cf86c4b1f3f8d081a9c77c5">PrecursorIonSelection</a>
</li>
<li>simulateRun_()
: <a class="el" href="classOpenMS_1_1PrecursorIonSelection.html#acb2e29dc60d50478abfdf1c85de60b37">PrecursorIonSelection</a>
</li>
<li>SingleLinkage()
: <a class="el" href="classOpenMS_1_1SingleLinkage.html#a84ec64b02873355687f7a3b7c4161bc5">SingleLinkage</a>
</li>
<li>SingletonRegistry()
: <a class="el" href="classOpenMS_1_1SingletonRegistry.html#aa52bd327231b191e8e3eaa545f0b6f8a">SingletonRegistry</a>
</li>
<li>size()
: <a class="el" href="structOpenSwath_1_1ITransitionGroup.html#a69315ea333d6d9996f5aa3ad290e586d">ITransitionGroup</a>
, <a class="el" href="classOpenSwath_1_1MockTransitionGroup.html#aee37e9309344d91a82e996b2e7fb905e">MockTransitionGroup</a>
, <a class="el" href="classOpenMS_1_1TransitionGroupOpenMS.html#aee37e9309344d91a82e996b2e7fb905e">TransitionGroupOpenMS&lt; SpectrumT, TransitionT &gt;</a>
, <a class="el" href="classOpenMS_1_1IsotopeDistribution.html#a9d78a687cf2a391198bb3cbc08bc06cb">IsotopeDistribution</a>
, <a class="el" href="classOpenMS_1_1ims_1_1IMSIsotopeDistribution.html#a503ab01f6c0142145d3434f6924714e7">IMSIsotopeDistribution</a>
, <a class="el" href="classOpenMS_1_1HashGrid.html#a503ab01f6c0142145d3434f6924714e7">HashGrid&lt; Cluster &gt;</a>
, <a class="el" href="classOpenMS_1_1DPosition.html#aba2ce46c5f6ed89c0f6c7b27dc93e1a5">DPosition&lt; D, TCoordinateType &gt;</a>
, <a class="el" href="structOpenMS_1_1Param_1_1ParamNode.html#a9d78a687cf2a391198bb3cbc08bc06cb">Param::ParamNode</a>
, <a class="el" href="classOpenMS_1_1Param.html#a9d78a687cf2a391198bb3cbc08bc06cb">Param</a>
, <a class="el" href="classOpenMS_1_1SparseVector.html#a503ab01f6c0142145d3434f6924714e7">SparseVector&lt; Value &gt;</a>
, <a class="el" href="classOpenMS_1_1MSExperiment.html#a9d78a687cf2a391198bb3cbc08bc06cb">MSExperiment&lt; PeakT, ChromatogramPeakT &gt;</a>
, <a class="el" href="structOpenMS_1_1FeatureFinderAlgorithmPickedHelperStructs_1_1TheoreticalIsotopePattern.html#a9d78a687cf2a391198bb3cbc08bc06cb">FeatureFinderAlgorithmPickedHelperStructs::TheoreticalIsotopePattern</a>
, <a class="el" href="classOpenMS_1_1MultiGradient.html#a9d78a687cf2a391198bb3cbc08bc06cb">MultiGradient</a>
, <a class="el" href="classOpenMS_1_1AASequence.html#a9d78a687cf2a391198bb3cbc08bc06cb">AASequence</a>
, <a class="el" href="classOpenMS_1_1Math_1_1Histogram.html#a9d78a687cf2a391198bb3cbc08bc06cb">Histogram&lt; ValueType, BinSizeType &gt;</a>
, <a class="el" href="classOpenMS_1_1IsotopeWaveletTransform_1_1TransSpectrum.html#a9d78a687cf2a391198bb3cbc08bc06cb">IsotopeWaveletTransform&lt; PeakType &gt;::TransSpectrum</a>
, <a class="el" href="classOpenMS_1_1ConsensusFeature.html#a9d78a687cf2a391198bb3cbc08bc06cb">ConsensusFeature</a>
, <a class="el" href="classOpenMS_1_1MRMTransitionGroup.html#a9d78a687cf2a391198bb3cbc08bc06cb">MRMTransitionGroup&lt; SpectrumType, TransitionType &gt;</a>
, <a class="el" href="classOpenMS_1_1DataFilters.html#a9d78a687cf2a391198bb3cbc08bc06cb">DataFilters</a>
, <a class="el" href="classOpenMS_1_1QTCluster.html#a9d78a687cf2a391198bb3cbc08bc06cb">QTCluster</a>
, <a class="el" href="classOpenMS_1_1BigString.html#a9a4c32403766cd16ca4e3a5479f075bd">BigString</a>
, <a class="el" href="classOpenMS_1_1ims_1_1IMSAlphabet.html#a503ab01f6c0142145d3434f6924714e7">IMSAlphabet</a>
, <a class="el" href="classOpenMS_1_1ConstRefVector.html#a503ab01f6c0142145d3434f6924714e7">ConstRefVector&lt; ContainerT &gt;</a>
, <a class="el" href="classOpenMS_1_1HierarchicalClustering_1_1BoundingBox.html#a33e2b59ad2223f210f5de5fcdda9952d">HierarchicalClustering&lt; PointRef &gt;::BoundingBox</a>
, <a class="el" href="classOpenMS_1_1ims_1_1Weights.html#a503ab01f6c0142145d3434f6924714e7">Weights</a>
</li>
<li>sizeHint()
: <a class="el" href="classOpenMS_1_1ColorSelector.html#aefbfb651cd9de25bd4e8ca0db19b2044">ColorSelector</a>
, <a class="el" href="classOpenMS_1_1IDEvaluationBase.html#aefbfb651cd9de25bd4e8ca0db19b2044">IDEvaluationBase</a>
</li>
<li>sizePair()
: <a class="el" href="classOpenMS_1_1Matrix.html#a428bdc52bbf5188e1242208c298c10eb">Matrix&lt; Value &gt;</a>
</li>
<li>SizeUnderflow()
: <a class="el" href="classOpenMS_1_1Exception_1_1SizeUnderflow.html#aeec34b99a3c6cdeff7fdeecd36c3f828">SizeUnderflow</a>
</li>
<li>smartFileNames_()
: <a class="el" href="classOpenMS_1_1TOPPASToolVertex.html#aadbb5bb7ef57c4075b2b385384035a44">TOPPASToolVertex</a>
</li>
<li>smooth()
: <a class="el" href="classOpenMS_1_1RawData.html#a522f1e5c050e7eeb870b97b185cb9c7d">RawData</a>
</li>
<li>smoothData()
: <a class="el" href="classOpenMS_1_1LowessSmoothing.html#a1895c393e670686751be014442199e2a">LowessSmoothing</a>
</li>
<li>smoothRTDistortion_()
: <a class="el" href="classOpenMS_1_1RTSimulation.html#af85a4b66f77e184b1f46ec180a8bced1">RTSimulation</a>
</li>
<li>snapToGrid()
: <a class="el" href="classOpenMS_1_1TOPPASScene.html#a35261fa4e0eecd53743048e3b095e54b">TOPPASScene</a>
</li>
<li>Software()
: <a class="el" href="classOpenMS_1_1Software.html#a638c5f0a2135d14a09cdbfe4c2c69bfc">Software</a>
</li>
<li>SoftwareVisualizer()
: <a class="el" href="classOpenMS_1_1SoftwareVisualizer.html#ae6c7a37aa84cb79214aa723eaa37d83f">SoftwareVisualizer</a>
</li>
<li>solve()
: <a class="el" href="classOpenMS_1_1NonNegativeLeastSquaresSolver.html#a08554ae15008caccbdc773d04fdb12f3">NonNegativeLeastSquaresSolver</a>
, <a class="el" href="classOpenMS_1_1LPWrapper.html#a17a8b82a8a7fe52a799e9fe7beb79e18">LPWrapper</a>
</li>
<li>solveGSL_()
: <a class="el" href="classOpenMS_1_1IsobaricIsotopeCorrector.html#a2c6ea63cb43778885d59d5aae6caa2fe">IsobaricIsotopeCorrector</a>
</li>
<li>solveILP()
: <a class="el" href="classOpenMS_1_1PSLPFormulation.html#ab5958e31e458230f7587571d8e88df72">PSLPFormulation</a>
</li>
<li>solveNNLS_()
: <a class="el" href="classOpenMS_1_1IsobaricIsotopeCorrector.html#a00530015d7347e131251c7f8bdcd6461">IsobaricIsotopeCorrector</a>
</li>
<li>SolverParam()
: <a class="el" href="structOpenMS_1_1LPWrapper_1_1SolverParam.html#a9d977268206b79588746823b75905445">LPWrapper::SolverParam</a>
</li>
<li>somethingHasChanged()
: <a class="el" href="classOpenMS_1_1TOPPASVertex.html#ace57d3bf6fe0ebe3d9eb59504353acc4">TOPPASVertex</a>
, <a class="el" href="classOpenMS_1_1TOPPASEdge.html#ace57d3bf6fe0ebe3d9eb59504353acc4">TOPPASEdge</a>
</li>
<li>sort()
: <a class="el" href="classOpenMS_1_1ProteinIdentification.html#a47fdc9eea42b6975cdc835bb2e08810e">ProteinIdentification</a>
, <a class="el" href="classOpenMS_1_1PeptideIdentification.html#a47fdc9eea42b6975cdc835bb2e08810e">PeptideIdentification</a>
</li>
<li>sortByComparator()
: <a class="el" href="classOpenMS_1_1ConstRefVector.html#a90038ea4a6900fd26d4d69717294551b">ConstRefVector&lt; ContainerT &gt;</a>
</li>
<li>sortByIntensity()
: <a class="el" href="classOpenMS_1_1ConstRefVector.html#a93f1c9f620403aec160d98e83e125502">ConstRefVector&lt; ContainerT &gt;</a>
, <a class="el" href="classOpenMS_1_1MSSpectrum.html#a93f1c9f620403aec160d98e83e125502">MSSpectrum&lt; PeakT &gt;</a>
, <a class="el" href="classOpenMS_1_1FeatureMap.html#a93f1c9f620403aec160d98e83e125502">FeatureMap&lt; FeatureT &gt;</a>
, <a class="el" href="classOpenMS_1_1MSChromatogram.html#a93f1c9f620403aec160d98e83e125502">MSChromatogram&lt; PeakT &gt;</a>
, <a class="el" href="classOpenMS_1_1ConsensusMap.html#a93f1c9f620403aec160d98e83e125502">ConsensusMap</a>
</li>
<li>sortByMaps()
: <a class="el" href="classOpenMS_1_1ConsensusMap.html#a4b00fc68dab08aa80d06f295999d8ade">ConsensusMap</a>
</li>
<li>sortByMZ()
: <a class="el" href="classOpenMS_1_1FeatureMap.html#a604ce6f3380b18acbebda3c1ed14e70c">FeatureMap&lt; FeatureT &gt;</a>
, <a class="el" href="classOpenMS_1_1ConsensusMap.html#a604ce6f3380b18acbebda3c1ed14e70c">ConsensusMap</a>
</li>
<li>sortByNames()
: <a class="el" href="classOpenMS_1_1ims_1_1IMSAlphabet.html#a6b9906f57445cc464887125c564b0b6b">IMSAlphabet</a>
</li>
<li>sortByOverallQuality()
: <a class="el" href="classOpenMS_1_1FeatureMap.html#a099506e6c3af2ab3e2ad1ed8781e0691">FeatureMap&lt; FeatureT &gt;</a>
</li>
<li>sortByPosition()
: <a class="el" href="classOpenMS_1_1MSChromatogram.html#a86f7b200260209865e730a2e4fcaa628">MSChromatogram&lt; PeakT &gt;</a>
, <a class="el" href="classOpenMS_1_1FeatureMap.html#a86f7b200260209865e730a2e4fcaa628">FeatureMap&lt; FeatureT &gt;</a>
, <a class="el" href="classOpenMS_1_1ConsensusMap.html#a86f7b200260209865e730a2e4fcaa628">ConsensusMap</a>
, <a class="el" href="classOpenMS_1_1ConstRefVector.html#a86f7b200260209865e730a2e4fcaa628">ConstRefVector&lt; ContainerT &gt;</a>
, <a class="el" href="classOpenMS_1_1MSSpectrum.html#a86f7b200260209865e730a2e4fcaa628">MSSpectrum&lt; PeakT &gt;</a>
</li>
<li>sortByQuality()
: <a class="el" href="classOpenMS_1_1ConsensusMap.html#abe20215d16b61fa78f24dab794497294">ConsensusMap</a>
</li>
<li>sortByRT()
: <a class="el" href="classOpenMS_1_1ConsensusMap.html#a13c4a8ce7f8275728e865728698173e6">ConsensusMap</a>
, <a class="el" href="classOpenMS_1_1FeatureMap.html#a13c4a8ce7f8275728e865728698173e6">FeatureMap&lt; FeatureT &gt;</a>
</li>
<li>sortBySize()
: <a class="el" href="classOpenMS_1_1ConsensusMap.html#a771c345052f7ce541a6b1fec88fa37c4">ConsensusMap</a>
</li>
<li>sortByTotalScore()
: <a class="el" href="classOpenMS_1_1PrecursorIonSelection.html#a2c348a002bfdedc62091f660a1dc2ad3">PrecursorIonSelection</a>
</li>
<li>sortByUnique_()
: <a class="el" href="classOpenMS_1_1ProteinInference.html#abe2ebe322f4dd103143bf4edecf33ab1">ProteinInference</a>
</li>
<li>sortByValues()
: <a class="el" href="classOpenMS_1_1ims_1_1IMSAlphabet.html#a305448252fbaf8d738991a32fe8094d3">IMSAlphabet</a>
</li>
<li>sortChromatograms()
: <a class="el" href="classOpenMS_1_1MSExperiment.html#aa679772c8c6b65183102bc220ebe7870">MSExperiment&lt; PeakT, ChromatogramPeakT &gt;</a>
</li>
<li>sortPSM_()
: <a class="el" href="classOpenMS_1_1MzTabFile.html#a04b7992b9fb15749292e3b3f8d0d2917">MzTabFile</a>
</li>
<li>sortSpectra()
: <a class="el" href="classOpenMS_1_1MSExperiment.html#ac518a80bea4f92fd700b235a12146658">MSExperiment&lt; PeakT, ChromatogramPeakT &gt;</a>
</li>
<li>sortTransitionsByProductMZ()
: <a class="el" href="classOpenMS_1_1TargetedExperiment.html#abc7d814820a48da344e780a775dfc5ac">TargetedExperiment</a>
</li>
<li>SourceFile()
: <a class="el" href="classOpenMS_1_1SourceFile.html#a23f8d44eef5fbc4fbe7b8ae7563e6cc5">SourceFile</a>
</li>
<li>SourceFileVisualizer()
: <a class="el" href="classOpenMS_1_1SourceFileVisualizer.html#a8c5ae0249fdced932786c1da81a2c63e">SourceFileVisualizer</a>
</li>
<li>sourceHasChanged()
: <a class="el" href="classOpenMS_1_1TOPPASEdge.html#a1152ca8b74bba96ed2f6e7eac2c3a135">TOPPASEdge</a>
</li>
<li>SparseVector()
: <a class="el" href="classOpenMS_1_1SparseVector.html#a955ff33d352dced120e75d55bd3cec2d">SparseVector&lt; Value &gt;</a>
</li>
<li>SparseVectorConstIterator()
: <a class="el" href="classOpenMS_1_1SparseVector_1_1SparseVectorConstIterator.html#abbab8de781a7678dd04dd9f2012711a2">SparseVector&lt; Value &gt;::SparseVectorConstIterator</a>
</li>
<li>SparseVectorConstReverseIterator()
: <a class="el" href="classOpenMS_1_1SparseVector_1_1SparseVectorConstReverseIterator.html#a7281c8e51bac36d0f0475a272a8cbdf9">SparseVector&lt; Value &gt;::SparseVectorConstReverseIterator</a>
</li>
<li>SparseVectorIterator()
: <a class="el" href="classOpenMS_1_1SparseVector_1_1SparseVectorIterator.html#aa101b12bb459495524f28c286f088b8d">SparseVector&lt; Value &gt;::SparseVectorIterator</a>
</li>
<li>SparseVectorReverseIterator()
: <a class="el" href="classOpenMS_1_1SparseVector_1_1SparseVectorReverseIterator.html#ad674cb260b47db59d51d56376a65c3a0">SparseVector&lt; Value &gt;::SparseVectorReverseIterator</a>
</li>
<li>spatiallyGreaterEqual()
: <a class="el" href="classOpenMS_1_1DPosition.html#a5831558f14e65ff4d500f8525f24ed78">DPosition&lt; D, TCoordinateType &gt;</a>
</li>
<li>spatiallyLessEqual()
: <a class="el" href="classOpenMS_1_1DPosition.html#a2e92c77c61d4f0f9f8c49ea5829f30f0">DPosition&lt; D, TCoordinateType &gt;</a>
</li>
<li>SpecArrayFile()
: <a class="el" href="classOpenMS_1_1SpecArrayFile.html#a1ae4e8b6d48f267a30ff85026f79ddc0">SpecArrayFile</a>
</li>
<li>SpectraDistance_()
: <a class="el" href="classOpenMS_1_1SpectraMerger_1_1SpectraDistance__.html#a3e1ce06a993fb34b6500bb445f679855">SpectraMerger::SpectraDistance_</a>
</li>
<li>SpectraIdentificationViewWidget()
: <a class="el" href="classOpenMS_1_1SpectraIdentificationViewWidget.html#a73c921fc5da38d6983b050a40e1c25af">SpectraIdentificationViewWidget</a>
</li>
<li>SpectraMerger()
: <a class="el" href="classOpenMS_1_1SpectraMerger.html#a25134b0d800caf6bee3bd719ecb87b09">SpectraMerger</a>
</li>
<li>SpectraSTSimilarityScore()
: <a class="el" href="classOpenMS_1_1SpectraSTSimilarityScore.html#a79cb327ac3a4f5c289dfadf7ade6bb99">SpectraSTSimilarityScore</a>
</li>
<li>SpectraViewWidget()
: <a class="el" href="classOpenMS_1_1SpectraViewWidget.html#a8c04708a104782accfa9f53db7b43cf0">SpectraViewWidget</a>
</li>
<li>Spectrum()
: <a class="el" href="structOpenMS_1_1Interfaces_1_1Spectrum.html#a230d485b9680661bf3c412a8e0005521">Spectrum</a>
</li>
<li>Spectrum1DCanvas()
: <a class="el" href="classOpenMS_1_1Spectrum1DCanvas.html#af34d45a58577ccd86131f6e42f5d3f66">Spectrum1DCanvas</a>
</li>
<li>Spectrum1DGoToDialog()
: <a class="el" href="classOpenMS_1_1Spectrum1DGoToDialog.html#a985529b1f749150b48b72edeac8b4bf5">Spectrum1DGoToDialog</a>
</li>
<li>Spectrum1DPrefDialog()
: <a class="el" href="classOpenMS_1_1Internal_1_1Spectrum1DPrefDialog.html#a664c6505c3801015bc9048dcb3466003">Spectrum1DPrefDialog</a>
</li>
<li>Spectrum1DWidget()
: <a class="el" href="classOpenMS_1_1Spectrum1DWidget.html#a3c87d1440a1063326ae4f2a39a3933d0">Spectrum1DWidget</a>
</li>
<li>Spectrum2DCanvas()
: <a class="el" href="classOpenMS_1_1Spectrum2DCanvas.html#a816e388e78f1cb61964f5305644cb6ea">Spectrum2DCanvas</a>
</li>
<li>Spectrum2DGoToDialog()
: <a class="el" href="classOpenMS_1_1Spectrum2DGoToDialog.html#af1a17d4cac39f6c3a5b9aa8cd5e47582">Spectrum2DGoToDialog</a>
</li>
<li>Spectrum2DPrefDialog()
: <a class="el" href="classOpenMS_1_1Internal_1_1Spectrum2DPrefDialog.html#a588520ece19a719b636669151a89ad60">Spectrum2DPrefDialog</a>
</li>
<li>Spectrum2DWidget()
: <a class="el" href="classOpenMS_1_1Spectrum2DWidget.html#a3a8311de4ad064c4f5376bbe697ff15f">Spectrum2DWidget</a>
</li>
<li>Spectrum3DCanvas()
: <a class="el" href="classOpenMS_1_1Spectrum3DCanvas.html#ae838d5b235ed7bb9885acdc0cb1d93a0">Spectrum3DCanvas</a>
</li>
<li>Spectrum3DOpenGLCanvas()
: <a class="el" href="classOpenMS_1_1Spectrum3DOpenGLCanvas.html#a8f53bbfdfbd97e40eeaa0503ad266055">Spectrum3DOpenGLCanvas</a>
</li>
<li>Spectrum3DPrefDialog()
: <a class="el" href="classOpenMS_1_1Internal_1_1Spectrum3DPrefDialog.html#a3789c7243f42feb4c900fd6f2f50d2a7">Spectrum3DPrefDialog</a>
</li>
<li>Spectrum3DWidget()
: <a class="el" href="classOpenMS_1_1Spectrum3DWidget.html#a67a0b79e2a22adcd9cb0567062615b70">Spectrum3DWidget</a>
</li>
<li>SpectrumAccessOpenMS()
: <a class="el" href="classOpenMS_1_1SpectrumAccessOpenMS.html#af1e2ba9776318fb07b842a0b44ece7a5">SpectrumAccessOpenMS</a>
</li>
<li>SpectrumAccessOpenMSCached()
: <a class="el" href="classOpenMS_1_1SpectrumAccessOpenMSCached.html#a263da4dabcf116393ad96da34f50b843">SpectrumAccessOpenMSCached</a>
</li>
<li>SpectrumAlignment()
: <a class="el" href="classOpenMS_1_1SpectrumAlignment.html#a8a5f7d3f0529fe0388b8122c5d898884">SpectrumAlignment</a>
</li>
<li>SpectrumAlignmentDialog()
: <a class="el" href="classOpenMS_1_1SpectrumAlignmentDialog.html#a946d0f82bf00258ad7f70447f1dd5c99">SpectrumAlignmentDialog</a>
</li>
<li>SpectrumAlignmentScore()
: <a class="el" href="classOpenMS_1_1SpectrumAlignmentScore.html#aeeef249d5ef89185769c13071b42096c">SpectrumAlignmentScore</a>
</li>
<li>spectrumBrowserHeaderContextMenu_()
: <a class="el" href="classOpenMS_1_1SpectraViewWidget.html#aa06e5263809503accb1ccf5e47566544">SpectraViewWidget</a>
</li>
<li>SpectrumCanvas()
: <a class="el" href="classOpenMS_1_1SpectrumCanvas.html#aaceaebeb2f42cceb77ff2f4fdffe6f5c">SpectrumCanvas</a>
</li>
<li>SpectrumCheapDPCorr()
: <a class="el" href="classOpenMS_1_1SpectrumCheapDPCorr.html#adc285709bcd2a74628cae1bf1cb4f512">SpectrumCheapDPCorr</a>
</li>
<li>spectrumContextMenu_()
: <a class="el" href="classOpenMS_1_1SpectraViewWidget.html#a85047b6adadbb64b524c17df454f777f">SpectraViewWidget</a>
</li>
<li>spectrumDeselected()
: <a class="el" href="classOpenMS_1_1SpectraIdentificationViewWidget.html#a85f4311d74c50647bf5f65cd2308de53">SpectraIdentificationViewWidget</a>
</li>
<li>spectrumDoubleClicked()
: <a class="el" href="classOpenMS_1_1SpectraViewWidget.html#a0a1f99e6779c316891938f7da13fb2ca">SpectraViewWidget</a>
, <a class="el" href="classOpenMS_1_1SpectraIdentificationViewWidget.html#a0a1f99e6779c316891938f7da13fb2ca">SpectraIdentificationViewWidget</a>
, <a class="el" href="classOpenMS_1_1SpectraViewWidget.html#a6a295e058a80f61b89821c2c6b2310a8">SpectraViewWidget</a>
</li>
<li>spectrumDoubleClicked_()
: <a class="el" href="classOpenMS_1_1SpectraViewWidget.html#aadd87b838c9610a027baee9a78f68ebc">SpectraViewWidget</a>
</li>
<li>SpectrumIdentification()
: <a class="el" href="classOpenMS_1_1SpectrumIdentification.html#ac6311b3cb690d4562d898cd631fc112b">SpectrumIdentification</a>
</li>
<li>SpectrumInterpolation()
: <a class="el" href="classOpenMS_1_1SILACFiltering_1_1SpectrumInterpolation.html#ad2171dc388b1bb6b1d2af372b7c73031">SILACFiltering::SpectrumInterpolation</a>
</li>
<li>SpectrumMeta()
: <a class="el" href="structOpenSwath_1_1SpectrumMeta.html#a978b5351bc5e00a1d1cfe850000a4613">SpectrumMeta</a>
</li>
<li>SpectrumPrecursorComparator()
: <a class="el" href="classOpenMS_1_1SpectrumPrecursorComparator.html#a9c3f6a9b2c8a4290ecb7588cb7ceb111">SpectrumPrecursorComparator</a>
</li>
<li>spectrumSelected()
: <a class="el" href="classOpenMS_1_1SpectraIdentificationViewWidget.html#a887a4af5124e91087c12b415e6b229c5">SpectraIdentificationViewWidget</a>
, <a class="el" href="classOpenMS_1_1SpectraViewWidget.html#a27a03589247cc97bed074da24706d6fe">SpectraViewWidget</a>
</li>
<li>spectrumSelected_()
: <a class="el" href="classOpenMS_1_1SpectraViewWidget.html#a3e8ef9d27ad9e1f8bfbfc8e22b57f440">SpectraViewWidget</a>
</li>
<li>spectrumSelectionChange_()
: <a class="el" href="classOpenMS_1_1SpectraIdentificationViewWidget.html#a1e143af53655381ca74e936389c866c7">SpectraIdentificationViewWidget</a>
, <a class="el" href="classOpenMS_1_1SpectraViewWidget.html#aa08f90ea7ffde654f19c11de5cd8fc9b">SpectraViewWidget</a>
</li>
<li>SpectrumSettings()
: <a class="el" href="classOpenMS_1_1SpectrumSettings.html#a16f8e7502a7294b2f347a7ba4eb85549">SpectrumSettings</a>
</li>
<li>SpectrumSettingsVisualizer()
: <a class="el" href="classOpenMS_1_1SpectrumSettingsVisualizer.html#a482c10f5ab869f7116fb894ebc143a6b">SpectrumSettingsVisualizer</a>
</li>
<li>SpectrumWidget()
: <a class="el" href="classOpenMS_1_1SpectrumWidget.html#ae4380f330a0309ea80b23023743d636a">SpectrumWidget</a>
</li>
<li>split()
: <a class="el" href="classOpenMS_1_1String.html#ae580d960e12c7f0ebc5c95931cf39ad5">String</a>
</li>
<li>split_quoted()
: <a class="el" href="classOpenMS_1_1String.html#afd454f7f9524d6d47a8641649b8877d1">String</a>
</li>
<li>sqrt2pi()
: <a class="el" href="classOpenMS_1_1Math_1_1BasicStatistics.html#a4dae6427f61f6519c3a0c7476d607254">BasicStatistics&lt; RealT &gt;</a>
</li>
<li>SqrtMower()
: <a class="el" href="classOpenMS_1_1SqrtMower.html#a981717c51c1d3d1eb663f6900b054025">SqrtMower</a>
</li>
<li>StablePairFinder()
: <a class="el" href="classOpenMS_1_1StablePairFinder.html#aa3eece6c10656ffd568d7eea0b09fa31">StablePairFinder</a>
</li>
<li>stairsInterpolation()
: <a class="el" href="classOpenMS_1_1MultiGradientSelector.html#aff37f91d82145e1a499cc25b370330f0">MultiGradientSelector</a>
</li>
<li>standard_stddev()
: <a class="el" href="classOpenSwath_1_1mean__and__stddev.html#a572505563eb12c8803cf887f732ef6c3">mean_and_stddev</a>
</li>
<li>standard_variance()
: <a class="el" href="classOpenSwath_1_1mean__and__stddev.html#a23177d026786da65c16cf53dde1dccdf">mean_and_stddev</a>
</li>
<li>start()
: <a class="el" href="classOpenMS_1_1StopWatch.html#aad5997aaaa2d622f0ca57f8b24a51a7b">StopWatch</a>
, <a class="el" href="classOpenMS_1_1FakeProcess.html#ab1206bc7c74fd1ac80f182de405f7b3d">FakeProcess</a>
</li>
<li>startElement()
: <a class="el" href="classOpenMS_1_1Internal_1_1TraMLHandler.html#a40f650be05ac6391244e5aabda5fc682">TraMLHandler</a>
, <a class="el" href="classOpenMS_1_1TransformationXMLFile.html#a40f650be05ac6391244e5aabda5fc682">TransformationXMLFile</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1SemanticValidator.html#a484c33c30ea480bd831a92847f61006e">SemanticValidator</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1XMLHandler.html#a769cd98c6f960e3df9fcb878e14318e8">XMLHandler</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1UnimodXMLHandler.html#a484c33c30ea480bd831a92847f61006e">UnimodXMLHandler</a>
, <a class="el" href="classOpenMS_1_1ConsensusXMLFile.html#a40f650be05ac6391244e5aabda5fc682">ConsensusXMLFile</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1MzDataHandler.html#a484c33c30ea480bd831a92847f61006e">MzDataHandler&lt; MapType &gt;</a>
, <a class="el" href="classOpenMS_1_1FeatureXMLFile.html#a40f650be05ac6391244e5aabda5fc682">FeatureXMLFile</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1MzIdentMLHandler.html#a40f650be05ac6391244e5aabda5fc682">MzIdentMLHandler</a>
, <a class="el" href="classOpenMS_1_1CVMappingFile.html#a484c33c30ea480bd831a92847f61006e">CVMappingFile</a>
, <a class="el" href="classOpenMS_1_1XTandemXMLFile.html#a484c33c30ea480bd831a92847f61006e">XTandemXMLFile</a>
, <a class="el" href="classOpenMS_1_1OMSSAXMLFile.html#a484c33c30ea480bd831a92847f61006e">OMSSAXMLFile</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1MzXMLHandler.html#aa1612242e2b5ea583324fadd8f0e5198">MzXMLHandler&lt; MapType &gt;</a>
, <a class="el" href="classOpenMS_1_1PepXMLFileMascot.html#a40f650be05ac6391244e5aabda5fc682">PepXMLFileMascot</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1ParamXMLHandler.html#aef87bf9b14552f8e2b9519daed8c1c65">ParamXMLHandler</a>
, <a class="el" href="classOpenMS_1_1ProtXMLFile.html#a40f650be05ac6391244e5aabda5fc682">ProtXMLFile</a>
, <a class="el" href="classOpenMS_1_1QcMLFile.html#a40f650be05ac6391244e5aabda5fc682">QcMLFile</a>
, <a class="el" href="classOpenMS_1_1PepXMLFile.html#a40f650be05ac6391244e5aabda5fc682">PepXMLFile</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1MzQuantMLHandler.html#a40f650be05ac6391244e5aabda5fc682">MzQuantMLHandler</a>
, <a class="el" href="classOpenMS_1_1IdXMLFile.html#a40f650be05ac6391244e5aabda5fc682">IdXMLFile</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1ToolDescriptionHandler.html#a40f650be05ac6391244e5aabda5fc682">ToolDescriptionHandler</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1MascotXMLHandler.html#a40f650be05ac6391244e5aabda5fc682">MascotXMLHandler</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1XTandemInfileXMLHandler.html#a484c33c30ea480bd831a92847f61006e">XTandemInfileXMLHandler</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1MzMLValidator.html#a484c33c30ea480bd831a92847f61006e">MzMLValidator</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1MzMLHandler.html#a484c33c30ea480bd831a92847f61006e">MzMLHandler&lt; MapType &gt;</a>
, <a class="el" href="classOpenMS_1_1Internal_1_1PTMXMLHandler.html#a40f650be05ac6391244e5aabda5fc682">PTMXMLHandler</a>
</li>
<li>startFeatureMerging()
: <a class="el" href="classOpenMS_1_1MS1FeatureMerger.html#ab2ec331d52ca5bfb03c9c3429c7e83cd">MS1FeatureMerger</a>
</li>
<li>startPos()
: <a class="el" href="classOpenMS_1_1TOPPASEdge.html#a4a8109a9252300f85e3a2c4e6931c32c">TOPPASEdge</a>
</li>
<li>startProgress()
: <a class="el" href="classOpenMS_1_1ProgressLogger.html#af1c45ecd71b5041b70319249e8e73591">ProgressLogger</a>
</li>
<li>startScanParsing()
: <a class="el" href="classOpenMS_1_1FTPeakDetectController.html#ae0d29d334402eb6e8d25646fd80db44a">FTPeakDetectController</a>
</li>
<li>Statistics()
: <a class="el" href="structOpenMS_1_1PeptideAndProteinQuant_1_1Statistics.html#abbb2d8b17aeeb5883b910fab07762a14">PeptideAndProteinQuant::Statistics</a>
</li>
<li>stddev()
: <a class="el" href="classOpenSwath_1_1mean__and__stddev.html#a4b46e55bb8bb93edaa8e5741177666ff">mean_and_stddev</a>
</li>
<li>SteinScottImproveScore()
: <a class="el" href="classOpenMS_1_1SteinScottImproveScore.html#a7bd85bc52b5c32f2243280310dc77ee2">SteinScottImproveScore</a>
</li>
<li>stop()
: <a class="el" href="classOpenMS_1_1StopWatch.html#a68a350717fe6bf9012843e7c977d87b2">StopWatch</a>
</li>
<li>StopWatch()
: <a class="el" href="classOpenMS_1_1StopWatch.html#a7ab4307455a412bcfdf1d6778a4a4c2f">StopWatch</a>
</li>
<li>store()
: <a class="el" href="classOpenMS_1_1ContactPersonVisualizer.html#af5d1fdcbfe78592afb590a4c244acf20">ContactPersonVisualizer</a>
, <a class="el" href="classOpenMS_1_1ScanWindowVisualizer.html#af5d1fdcbfe78592afb590a4c244acf20">ScanWindowVisualizer</a>
, <a class="el" href="classOpenMS_1_1DocumentIdentifierVisualizer.html#af5d1fdcbfe78592afb590a4c244acf20">DocumentIdentifierVisualizer</a>
, <a class="el" href="classOpenMS_1_1SoftwareVisualizer.html#af5d1fdcbfe78592afb590a4c244acf20">SoftwareVisualizer</a>
, <a class="el" href="classOpenMS_1_1MzQuantMLFile.html#aafe60b67d30415c197f1ebfd10bf01c6">MzQuantMLFile</a>
, <a class="el" href="classOpenMS_1_1TraMLFile.html#a2ba23821e54d4595bec58a1cc384e8fd">TraMLFile</a>
, <a class="el" href="classOpenMS_1_1GradientVisualizer.html#af5d1fdcbfe78592afb590a4c244acf20">GradientVisualizer</a>
, <a class="el" href="classOpenMS_1_1DataProcessingVisualizer.html#af5d1fdcbfe78592afb590a4c244acf20">DataProcessingVisualizer</a>
, <a class="el" href="classOpenMS_1_1ExperimentalSettingsVisualizer.html#af5d1fdcbfe78592afb590a4c244acf20">ExperimentalSettingsVisualizer</a>
, <a class="el" href="classOpenMS_1_1ParamEditor.html#af5d1fdcbfe78592afb590a4c244acf20">ParamEditor</a>
, <a class="el" href="classOpenMS_1_1IdXMLFile.html#abb7d96da3e275c1d090fc6db3185becd">IdXMLFile</a>
, <a class="el" href="classOpenMS_1_1TOPPASScene.html#adaabe3154a63f5243965eba1e62a0ba0">TOPPASScene</a>
, <a class="el" href="classOpenMS_1_1AcquisitionVisualizer.html#af5d1fdcbfe78592afb590a4c244acf20">AcquisitionVisualizer</a>
, <a class="el" href="classOpenMS_1_1BaseVisualizerGUI.html#a45ca33ff7e3791bd235037ca801d9274">BaseVisualizerGUI</a>
, <a class="el" href="structOpenSwath_1_1CSVWriter.html#aaf30c20442c11238e485024ec9707fa0">CSVWriter</a>
, <a class="el" href="classOpenMS_1_1MzDataFile.html#adb795d215478320be7c6130ff7ddf853">MzDataFile</a>
, <a class="el" href="classOpenMS_1_1XMassFile.html#a79101323d46a867becad4539db9446b5">XMassFile</a>
, <a class="el" href="classOpenMS_1_1InspectInfile.html#a4fb93f999151e70a0f506c4c36f63fd7">InspectInfile</a>
, <a class="el" href="classOpenMS_1_1MzMLFile.html#adb795d215478320be7c6130ff7ddf853">MzMLFile</a>
, <a class="el" href="classOpenMS_1_1ModificationVisualizer.html#af5d1fdcbfe78592afb590a4c244acf20">ModificationVisualizer</a>
, <a class="el" href="classOpenMS_1_1PeptideIdentificationVisualizer.html#af5d1fdcbfe78592afb590a4c244acf20">PeptideIdentificationVisualizer</a>
, <a class="el" href="classOpenMS_1_1SpecArrayFile.html#aad1400476baaa9e6ff74301f6395c5e8">SpecArrayFile</a>
, <a class="el" href="classOpenMS_1_1TOPPASResources.html#ae9005bda017a2220dfb8ae0747865552">TOPPASResources</a>
, <a class="el" href="classOpenMS_1_1TextFile.html#a4fb93f999151e70a0f506c4c36f63fd7">TextFile</a>
, <a class="el" href="classOpenMS_1_1DTAFile.html#aad1400476baaa9e6ff74301f6395c5e8">DTAFile</a>
, <a class="el" href="classOpenMS_1_1InstrumentSettingsVisualizer.html#af5d1fdcbfe78592afb590a4c244acf20">InstrumentSettingsVisualizer</a>
, <a class="el" href="classOpenMS_1_1AcquisitionInfoVisualizer.html#af5d1fdcbfe78592afb590a4c244acf20">AcquisitionInfoVisualizer</a>
, <a class="el" href="classOpenMS_1_1ConsensusXMLFile.html#af72f4966d65af7a802025d8640a0e570">ConsensusXMLFile</a>
, <a class="el" href="classOpenMS_1_1MzXMLFile.html#adb795d215478320be7c6130ff7ddf853">MzXMLFile</a>
, <a class="el" href="classOpenMS_1_1PepXMLFile.html#a86c356a2707e219e7201b3c593d95df8">PepXMLFile</a>
, <a class="el" href="classOpenMS_1_1MascotInfile.html#ae2b2400b81585e827b564e4f2254cb4b">MascotInfile</a>
, <a class="el" href="classOpenMS_1_1IonDetectorVisualizer.html#af5d1fdcbfe78592afb590a4c244acf20">IonDetectorVisualizer</a>
, <a class="el" href="classOpenMS_1_1MzIdentMLFile.html#a700364332a36ede5464eac312d44548e">MzIdentMLFile</a>
, <a class="el" href="classOpenMS_1_1ProteinIdentificationVisualizer.html#af5d1fdcbfe78592afb590a4c244acf20">ProteinIdentificationVisualizer</a>
, <a class="el" href="classOpenMS_1_1QcMLFile.html#a5c61848ba93614e9741efd89b6ff9c97">QcMLFile</a>
, <a class="el" href="classOpenMS_1_1KroenikFile.html#aad1400476baaa9e6ff74301f6395c5e8">KroenikFile</a>
, <a class="el" href="classOpenMS_1_1FeatureXMLFile.html#ae05e70281bd2c24b9cfa431200669858">FeatureXMLFile</a>
, <a class="el" href="classOpenMS_1_1SampleVisualizer.html#af5d1fdcbfe78592afb590a4c244acf20">SampleVisualizer</a>
, <a class="el" href="classOpenMS_1_1IonSourceVisualizer.html#af5d1fdcbfe78592afb590a4c244acf20">IonSourceVisualizer</a>
, <a class="el" href="classOpenMS_1_1MassAnalyzerVisualizer.html#af5d1fdcbfe78592afb590a4c244acf20">MassAnalyzerVisualizer</a>
, <a class="el" href="classOpenMS_1_1PeptideHitVisualizer.html#af5d1fdcbfe78592afb590a4c244acf20">PeptideHitVisualizer</a>
, <a class="el" href="classOpenMS_1_1MascotGenericFile.html#a18329ad480462e600d3445ab74efcbd5">MascotGenericFile</a>
, <a class="el" href="classOpenMS_1_1MascotInfile.html#ab9f8421d3403c86a01f45098e71b7e43">MascotInfile</a>
, <a class="el" href="classOpenMS_1_1PrecursorVisualizer.html#af5d1fdcbfe78592afb590a4c244acf20">PrecursorVisualizer</a>
, <a class="el" href="classOpenMS_1_1InstrumentVisualizer.html#af5d1fdcbfe78592afb590a4c244acf20">InstrumentVisualizer</a>
, <a class="el" href="classOpenMS_1_1ParamXMLFile.html#abc2449ecf46bffe99727fc2c1df21079">ParamXMLFile</a>
, <a class="el" href="classOpenMS_1_1SpectrumSettingsVisualizer.html#af5d1fdcbfe78592afb590a4c244acf20">SpectrumSettingsVisualizer</a>
, <a class="el" href="classOpenMS_1_1TaggingVisualizer.html#af5d1fdcbfe78592afb590a4c244acf20">TaggingVisualizer</a>
, <a class="el" href="classOpenMS_1_1PTMXMLFile.html#a9a6e2d5feb4e531787d755ebf460d1a1">PTMXMLFile</a>
, <a class="el" href="classOpenMS_1_1PepNovoInfile.html#a4fb93f999151e70a0f506c4c36f63fd7">PepNovoInfile</a>
, <a class="el" href="classOpenMS_1_1MzTabFile.html#a77398b68e39efd05997e4bb1e5d6f400">MzTabFile</a>
, <a class="el" href="structOpenMS_1_1SVMData.html#ab24ead6f6e29dedb994dc105b144fda9">SVMData</a>
, <a class="el" href="classOpenMS_1_1ProtXMLFile.html#a04abaf2fe038429d09ef556db3af3893">ProtXMLFile</a>
, <a class="el" href="classOpenMS_1_1FASTAFile.html#a01666aa3062d6e20a48b1c776151f7d8">FASTAFile</a>
, <a class="el" href="classOpenMS_1_1MetaInfoDescriptionVisualizer.html#af5d1fdcbfe78592afb590a4c244acf20">MetaInfoDescriptionVisualizer</a>
, <a class="el" href="classOpenMS_1_1SourceFileVisualizer.html#af5d1fdcbfe78592afb590a4c244acf20">SourceFileVisualizer</a>
, <a class="el" href="classOpenMS_1_1TransformationXMLFile.html#abdddea80e737ce717013609e58e755f0">TransformationXMLFile</a>
, <a class="el" href="structOpenSwath_1_1IDataFrameWriter.html#a4a4affa9d4b1e774ce46682dd8e829ee">IDataFrameWriter</a>
, <a class="el" href="classOpenMS_1_1HPLCVisualizer.html#af5d1fdcbfe78592afb590a4c244acf20">HPLCVisualizer</a>
, <a class="el" href="classOpenMS_1_1DigestionVisualizer.html#af5d1fdcbfe78592afb590a4c244acf20">DigestionVisualizer</a>
, <a class="el" href="classOpenMS_1_1MzTabFile.html#a9b973edfdb8f9a6ef116d8bab6004d93">MzTabFile</a>
, <a class="el" href="classOpenMS_1_1DTA2DFile.html#adb795d215478320be7c6130ff7ddf853">DTA2DFile</a>
, <a class="el" href="classOpenMS_1_1MsInspectFile.html#aad1400476baaa9e6ff74301f6395c5e8">MsInspectFile</a>
, <a class="el" href="structOpenSwath_1_1DataMatrix.html#aaf30c20442c11238e485024ec9707fa0">DataMatrix</a>
, <a class="el" href="classOpenMS_1_1MascotGenericFile.html#ab0d18b84911d09f4eeebfa3c38827aa9">MascotGenericFile</a>
, <a class="el" href="classOpenMS_1_1MzIdentMLFile.html#a7ec5ff1e615b76a33b83bbb69f9a7bdf">MzIdentMLFile</a>
, <a class="el" href="classOpenMS_1_1EDTAFile.html#ac77602758d794fd1dab2e32b53de37ea">EDTAFile</a>
, <a class="el" href="classOpenMS_1_1ProteinHitVisualizer.html#af5d1fdcbfe78592afb590a4c244acf20">ProteinHitVisualizer</a>
, <a class="el" href="classOpenMS_1_1MSPFile.html#aae11977c6342788d868ce13280292b44">MSPFile</a>
, <a class="el" href="classOpenMS_1_1ToolDescriptionFile.html#a2db6a46752177a9f3cc1f108909ae7ee">ToolDescriptionFile</a>
, <a class="el" href="classOpenMS_1_1EDTAFile.html#a52b05a6c14de9e503156d5e5aa781a78">EDTAFile</a>
, <a class="el" href="classOpenMS_1_1MetaInfoVisualizer.html#af5d1fdcbfe78592afb590a4c244acf20">MetaInfoVisualizer</a>
, <a class="el" href="classOpenMS_1_1SequestInfile.html#a4fb93f999151e70a0f506c4c36f63fd7">SequestInfile</a>
, <a class="el" href="classOpenMS_1_1ProductVisualizer.html#af5d1fdcbfe78592afb590a4c244acf20">ProductVisualizer</a>
</li>
<li>storeAllLowProbabilityMS2Scans()
: <a class="el" href="classOpenMS_1_1SuperHirnParameters.html#a38a9b790c3d04869aa45c8a9d3d52c37">SuperHirnParameters</a>
</li>
<li>storeExperiment()
: <a class="el" href="classOpenMS_1_1DBAdapter.html#ac594c8ab5a3032ac493b375c7175f533">DBAdapter</a>
, <a class="el" href="classOpenMS_1_1FileHandler.html#a4a8354ef45f8a0eac5a5038b3a025f37">FileHandler</a>
</li>
<li>storeFile_()
: <a class="el" href="classOpenMS_1_1DBAdapter.html#aca95bbdb59bcd3152d70f399e928b4a2">DBAdapter</a>
</li>
<li>storeINI_()
: <a class="el" href="classOpenMS_1_1TOPPASToolConfigDialog.html#a42679ff977814d955bf2fb244bd081c2">TOPPASToolConfigDialog</a>
, <a class="el" href="classOpenMS_1_1ToolsDialog.html#a42679ff977814d955bf2fb244bd081c2">ToolsDialog</a>
</li>
<li>storeLibSVMProblem()
: <a class="el" href="classOpenMS_1_1LibSVMEncoder.html#ab9a514a9fd405b986cd85ef4d3b9ea54">LibSVMEncoder</a>
</li>
<li>storeMetaInfo_()
: <a class="el" href="classOpenMS_1_1DBAdapter.html#a231c675c22a74b94d7690e685eaabb2f">DBAdapter</a>
</li>
<li>storeRecursive_()
: <a class="el" href="classOpenMS_1_1ParamEditor.html#a3442f1f7bd3b3b1fdba2227485a72e77">ParamEditor</a>
</li>
<li>storeRotationAndZoom()
: <a class="el" href="classOpenMS_1_1Spectrum3DOpenGLCanvas.html#a83b9b1b56292130b18e1169904940c24">Spectrum3DOpenGLCanvas</a>
</li>
<li>storeSample_()
: <a class="el" href="classOpenMS_1_1DBAdapter.html#ae38edd7365e0241ed6b46b81ea5fe6ee">DBAdapter</a>
</li>
<li>storeTIC()
: <a class="el" href="classOpenMS_1_1DTA2DFile.html#a4dc28e36e6da7b6618b255a4e1d82ded">DTA2DFile</a>
</li>
<li>StreamElement_()
: <a class="el" href="structOpenMS_1_1FuzzyStringComparator_1_1StreamElement__.html#a9064e0738a5b31e4056afff4d63834f1">FuzzyStringComparator::StreamElement_</a>
</li>
<li>streamEnd()
: <a class="el" href="classOpenMS_1_1GzipIfstream.html#a5e93134387edbe53b3ae66852a37eb1f">GzipIfstream</a>
, <a class="el" href="classOpenMS_1_1Bzip2Ifstream.html#a5e93134387edbe53b3ae66852a37eb1f">Bzip2Ifstream</a>
</li>
<li>StreamHandler()
: <a class="el" href="classOpenMS_1_1StreamHandler.html#a127399629c1b0cd84b925fb41069a244">StreamHandler</a>
</li>
<li>StreamStruct()
: <a class="el" href="structOpenMS_1_1Logger_1_1LogStreamBuf_1_1StreamStruct.html#ab438b14262e6a33782d6f70ddbf5bb00">LogStreamBuf::StreamStruct</a>
</li>
<li>String()
: <a class="el" href="classOpenMS_1_1String.html#a2a833574801ab9eadf894a8fe7ab1739">String</a>
</li>
<li>StringList()
: <a class="el" href="classOpenMS_1_1StringList.html#a2124ba15277215541f739f401579eac5">StringList</a>
</li>
<li>stringListToIsotopCorrectionMatrix_()
: <a class="el" href="classOpenMS_1_1IsobaricQuantitationMethod.html#ad7f1c9c450ddd4b4872561038f21020c">IsobaricQuantitationMethod</a>
</li>
<li>StringManager()
: <a class="el" href="classOpenMS_1_1Internal_1_1StringManager.html#ac1866a305eaaf55ab0a74161147820f4">StringManager</a>
</li>
<li>substitute()
: <a class="el" href="classOpenMS_1_1String.html#a8fca08235a25819cf09375f867815f09">String</a>
</li>
<li>substr()
: <a class="el" href="classOpenMS_1_1String.html#a226b41d565aa586bd45aa7d046608511">String</a>
</li>
<li>subtractIntensity()
: <a class="el" href="classOpenMS_1_1CentroidPeak.html#adf1e7026ef51ebde0df0a84bc900cdd5">CentroidPeak</a>
</li>
<li>subtractMatchingPeaks()
: <a class="el" href="classOpenMS_1_1IsotopicDist.html#a82dadee06703f7700c0e7970995e41de">IsotopicDist</a>
</li>
<li>suffix()
: <a class="el" href="classOpenMS_1_1String.html#a0e8f9df8ad23769ebc0ff27a7b38ebeb">String</a>
, <a class="el" href="structOpenMS_1_1Param_1_1ParamNode.html#aa6ee0f8092d62cc364466bbbf609f290">Param::ParamNode</a>
, <a class="el" href="classOpenMS_1_1String.html#ac913d4067bd66efff74968e24641356a">String</a>
</li>
<li>SuffixArray()
: <a class="el" href="classOpenMS_1_1SuffixArray.html#a4b1b30caafcf911c9e5b53d454fc3d42">SuffixArray</a>
</li>
<li>SuffixArrayPeptideFinder()
: <a class="el" href="classOpenMS_1_1SuffixArrayPeptideFinder.html#a4cfe93f01ea66eb8adc71135b21d1ce8">SuffixArrayPeptideFinder</a>
</li>
<li>SuffixArraySeqan()
: <a class="el" href="classOpenMS_1_1SuffixArraySeqan.html#a26dc50bfb537bb5cc0082a1481f54ff3">SuffixArraySeqan</a>
</li>
<li>SuffixArrayTrypticCompressed()
: <a class="el" href="classOpenMS_1_1SuffixArrayTrypticCompressed.html#a005ba5e318f32034cd5f071c87d6ebcf">SuffixArrayTrypticCompressed</a>
</li>
<li>SuffixArrayTrypticSeqan()
: <a class="el" href="classOpenMS_1_1SuffixArrayTrypticSeqan.html#a10119b1df48bec175a8f4811b02bed25">SuffixArrayTrypticSeqan</a>
</li>
<li>sum()
: <a class="el" href="classOpenMS_1_1Math_1_1BasicStatistics.html#a12bfbd1006913b0dcc37312cc5215385">BasicStatistics&lt; RealT &gt;</a>
</li>
<li>sum_neg_sigma()
: <a class="el" href="classOpenMS_1_1Math_1_1PosteriorErrorProbabilityModel.html#a0bbdb1b3d7121b4e7de32171840d00cc">PosteriorErrorProbabilityModel</a>
</li>
<li>sum_neg_x0()
: <a class="el" href="classOpenMS_1_1Math_1_1PosteriorErrorProbabilityModel.html#a71781c048ba5e7aa78b323e6ef3c6369">PosteriorErrorProbabilityModel</a>
</li>
<li>sum_pos_sigma()
: <a class="el" href="classOpenMS_1_1Math_1_1PosteriorErrorProbabilityModel.html#aae0d282a95f4e1fa3ccfee661e1f2cb1">PosteriorErrorProbabilityModel</a>
</li>
<li>sum_pos_x0()
: <a class="el" href="classOpenMS_1_1Math_1_1PosteriorErrorProbabilityModel.html#aaca43ed20eb3a54cff6dc725676cf9f5">PosteriorErrorProbabilityModel</a>
</li>
<li>sum_post()
: <a class="el" href="classOpenMS_1_1Math_1_1PosteriorErrorProbabilityModel.html#a4d7c33373f61243ca3b178c17b1d0939">PosteriorErrorProbabilityModel</a>
</li>
<li>Summary()
: <a class="el" href="structOpenMS_1_1Summary.html#aefa4763f220277411c5ad31d828d05f4">Summary</a>
</li>
<li>sumPotentialIsotopePeaks_()
: <a class="el" href="classOpenMS_1_1IsobaricChannelExtractor.html#a1e4cc511faefbbfaa6ebf32d5bfa833f">IsobaricChannelExtractor</a>
</li>
<li>SuperHirnParameters()
: <a class="el" href="classOpenMS_1_1SuperHirnParameters.html#ae0af36c73949d0fa81c309816394fb7e">SuperHirnParameters</a>
</li>
<li>supportMax()
: <a class="el" href="classOpenMS_1_1Math_1_1LinearInterpolation.html#a8211b69a5156453d6a8b96e144b7ddfd">LinearInterpolation&lt; Key, Value &gt;</a>
</li>
<li>supportMax_0()
: <a class="el" href="classOpenMS_1_1Math_1_1BilinearInterpolation.html#afbcd268ab5a6ea36d983a79f3c57bac6">BilinearInterpolation&lt; Key, Value &gt;</a>
</li>
<li>supportMax_1()
: <a class="el" href="classOpenMS_1_1Math_1_1BilinearInterpolation.html#a888d898f9ddd7891832fd7c31b4c4fc6">BilinearInterpolation&lt; Key, Value &gt;</a>
</li>
<li>supportMin()
: <a class="el" href="classOpenMS_1_1Math_1_1LinearInterpolation.html#af27f3ce0151f646487f796d77f2c1091">LinearInterpolation&lt; Key, Value &gt;</a>
</li>
<li>supportMin_0()
: <a class="el" href="classOpenMS_1_1Math_1_1BilinearInterpolation.html#a3c3519abd5d116c3f9ea35cee1b55583">BilinearInterpolation&lt; Key, Value &gt;</a>
</li>
<li>supportMin_1()
: <a class="el" href="classOpenMS_1_1Math_1_1BilinearInterpolation.html#ad85c746f225de67ed56d049bbfe9b6c3">BilinearInterpolation&lt; Key, Value &gt;</a>
</li>
<li>SVMData()
: <a class="el" href="structOpenMS_1_1SVMData.html#a2f59f2a4b9e6a390f8f32f9e6383b7b2">SVMData</a>
</li>
<li>svmFilter_()
: <a class="el" href="classOpenMS_1_1DetectabilitySimulation.html#afb280885b1a0839f2572ad2a05c749f3">DetectabilitySimulation</a>
</li>
<li>SvmTheoreticalSpectrumGenerator()
: <a class="el" href="classOpenMS_1_1SvmTheoreticalSpectrumGenerator.html#a9edd4dc9e81412353100b1868cfa3977">SvmTheoreticalSpectrumGenerator</a>
</li>
<li>SvmTheoreticalSpectrumGeneratorSet()
: <a class="el" href="classOpenMS_1_1SvmTheoreticalSpectrumGeneratorSet.html#a29d9f15cfeb96288300a0f58a1d818a3">SvmTheoreticalSpectrumGeneratorSet</a>
</li>
<li>SvmTheoreticalSpectrumGeneratorTrainer()
: <a class="el" href="classOpenMS_1_1SvmTheoreticalSpectrumGeneratorTrainer.html#a49bc5bfcae67bec7302b21b2d961bfbe">SvmTheoreticalSpectrumGeneratorTrainer</a>
</li>
<li>SVMWrapper()
: <a class="el" href="classOpenMS_1_1SVMWrapper.html#af6789712aacb4b6bba44e01225d4eb13">SVMWrapper</a>
</li>
<li>SVOutStream()
: <a class="el" href="classOpenMS_1_1SVOutStream.html#ad41ee60f96677af46a8808c9c2bda706">SVOutStream</a>
</li>
<li>swap()
: <a class="el" href="classOpenMS_1_1DocumentIdentifier.html#af35350b215e234aeb68b5a2d058e9c6f">DocumentIdentifier</a>
, <a class="el" href="classOpenMS_1_1ConsensusMap.html#acba0591900981bb045b43840136f5e8e">ConsensusMap</a>
, <a class="el" href="classOpenMS_1_1MSExperiment.html#a1acb534122a4490f537bd523ec7e8c74">MSExperiment&lt; PeakT, ChromatogramPeakT &gt;</a>
, <a class="el" href="classOpenMS_1_1UniqueIdInterface.html#a9a9411d34dd0e6318ccc47ccd0c610e3">UniqueIdInterface</a>
, <a class="el" href="classOpenMS_1_1UniqueIdIndexer.html#aea463f31c206ea88fbc82a37174b287a">UniqueIdIndexer&lt; RandomAccessContainer &gt;</a>
, <a class="el" href="classOpenMS_1_1ims_1_1Weights.html#a01552533c7b390ca48bf46a02aa339a3">Weights</a>
, <a class="el" href="classOpenMS_1_1FeatureMap.html#a7ade52218357ec67a4f7a6bc71041e85">FeatureMap&lt; FeatureT &gt;</a>
, <a class="el" href="classOpenMS_1_1ConstRefVector.html#af7548b6bf7baf143b7ce85c66aefd99a">ConstRefVector&lt; ContainerT &gt;</a>
</li>
<li>swapFeaturesOnly()
: <a class="el" href="classOpenMS_1_1FeatureMap.html#a3554cb60a93215ed6c61b257a67efcc3">FeatureMap&lt; FeatureT &gt;</a>
</li>
<li>sync()
: <a class="el" href="classOpenMS_1_1Logger_1_1LogStreamBuf.html#a810a727ce5554d3178e17b6bc55025dd">LogStreamBuf</a>
</li>
<li>syncParams_()
: <a class="el" href="classOpenMS_1_1MSSim.html#a63efff66245e023f272fa69fee0631fe">MSSim</a>
</li>
</ul>
</div><!-- contents -->
<HR style="height:1px; border:none; border-top:1px solid #c0c0c0;">
<TABLE width="100%" border="0">
<TR>
<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:20:59 using doxygen 1.8.5</font></TD>
</TR>
</TABLE>
</BODY>
</HTML>