File: group__FeatureFinder.html

package info (click to toggle)
openms 1.11.1-5
  • links: PTS, VCS
  • area: main
  • in suites: jessie, jessie-kfreebsd
  • size: 436,688 kB
  • ctags: 150,907
  • sloc: cpp: 387,126; xml: 71,547; python: 7,764; ansic: 2,626; php: 2,499; sql: 737; ruby: 342; sh: 325; makefile: 128
file content (105 lines) | stat: -rw-r--r-- 11,342 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
<HTML>
<HEAD>
<TITLE>FeatureFinder</TITLE>
<LINK HREF="doxygen.css" REL="stylesheet" TYPE="text/css">
<LINK HREF="style_ini.css" REL="stylesheet" TYPE="text/css">
</HEAD>
<BODY BGCOLOR="#FFFFFF">
<A href="index.html">Home</A> &nbsp;&middot;
<A href="classes.html">Classes</A> &nbsp;&middot;
<A href="annotated.html">Annotated Classes</A> &nbsp;&middot;
<A href="modules.html">Modules</A> &nbsp;&middot;
<A href="functions_func.html">Members</A> &nbsp;&middot;
<A href="namespaces.html">Namespaces</A> &nbsp;&middot;
<A href="pages.html">Related Pages</A>
<HR style="height:1px; border:none; border-top:1px solid #c0c0c0;">
<!-- Generated by Doxygen 1.8.5 -->
</div><!-- top -->
<div class="header">
  <div class="summary">
<a href="#nested-classes">Classes</a> &#124;
<a href="#typedef-members">Typedefs</a>  </div>
  <div class="headertitle">
<div class="title">FeatureFinder<div class="ingroups"><a class="el" href="group__Analysis.html">Analysis</a></div></div>  </div>
</div><!--header-->
<div class="contents">

<p>The feature detection algorithms.  
<a href="#details">More...</a></p>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
Classes</h2></td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureFinder.html">FeatureFinder</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">The main feature finder class.  <a href="classOpenMS_1_1FeatureFinder.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmIsotopeWavelet.html">FeatureFinderAlgorithmIsotopeWavelet&lt; PeakType, FeatureType &gt;</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Implements the isotope wavelet feature finder.  <a href="classOpenMS_1_1FeatureFinderAlgorithmIsotopeWavelet.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmMRM.html">FeatureFinderAlgorithmMRM&lt; PeakType, FeatureType &gt;</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html" title="Abstract base class for FeatureFinder algorithms. ">FeatureFinderAlgorithm</a> for MRM experiments.  <a href="classOpenMS_1_1FeatureFinderAlgorithmMRM.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked&lt; PeakType, FeatureType &gt;</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html" title="Abstract base class for FeatureFinder algorithms. ">FeatureFinderAlgorithm</a> for picked peaks.  <a href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSH.html">FeatureFinderAlgorithmSH&lt; PeakType, FeatureType &gt;</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">The Superhirn <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html" title="Abstract base class for FeatureFinder algorithms. ">FeatureFinderAlgorithm</a>.  <a href="classOpenMS_1_1FeatureFinderAlgorithmSH.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimple.html">FeatureFinderAlgorithmSimple&lt; PeakType, FeatureType &gt;</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html" title="Abstract base class for FeatureFinder algorithms. ">FeatureFinderAlgorithm</a> implementation using the Simple* modules.  <a href="classOpenMS_1_1FeatureFinderAlgorithmSimple.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimplest.html">FeatureFinderAlgorithmSimplest&lt; PeakType, FeatureType &gt;</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html" title="Abstract base class for FeatureFinder algorithms. ">FeatureFinderAlgorithm</a> implementation using the Simple* modules.  <a href="classOpenMS_1_1FeatureFinderAlgorithmSimplest.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Fitter1D.html">Fitter1D</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Abstract base class for all 1D-dimensional model fitter.  <a href="classOpenMS_1_1Fitter1D.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1InterpolationModel.html">InterpolationModel</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Abstract class for 1D-models that are approximated using linear interpolation.  <a href="classOpenMS_1_1InterpolationModel.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html">ModelFitter&lt; PeakType, FeatureType &gt;</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Tests a group of data points in an LC-MS map for goodness-of-fit with a 2D averagine model.  <a href="classOpenMS_1_1ModelFitter.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProductModel.html">ProductModel&lt; D &gt;</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Class for product models i.e. models with D independent dimensions.  <a href="classOpenMS_1_1ProductModel.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SimpleExtender.html">SimpleExtender&lt; PeakType, FeatureType &gt;</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Simple feature extension algorithm.  <a href="classOpenMS_1_1SimpleExtender.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SimpleSeeder.html">SimpleSeeder&lt; PeakType, FeatureType &gt;</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Simple seeding class that uses the strongest peak as next seed.  <a href="classOpenMS_1_1SimpleSeeder.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="typedef-members"></a>
Typedefs</h2></td></tr>
<tr class="memitem:ga69e18760fc6f819a5a7d5bec62f1c44e"><td class="memItemLeft" align="right" valign="top">typedef std::pair&lt; <a class="el" href="classdouble.html">double</a>, <br class="typebreak"/>
boost::shared_ptr&lt; RawData &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__FeatureFinder.html#ga69e18760fc6f819a5a7d5bec62f1c44e">MyMap</a></td></tr>
<tr class="memdesc:ga69e18760fc6f819a5a7d5bec62f1c44e"><td class="mdescLeft">&#160;</td><td class="mdescRight">A facade for various Superhirn <a class="el" href="classOpenMS_1_1FeatureFinder.html" title="The main feature finder class. ">FeatureFinder</a> classes. Use <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSH.html" title="The Superhirn FeatureFinderAlgorithm. ">FeatureFinderAlgorithmSH</a> instead.  <a href="#ga69e18760fc6f819a5a7d5bec62f1c44e">More...</a><br/></td></tr>
<tr class="separator:ga69e18760fc6f819a5a7d5bec62f1c44e"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table>
<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<p>The feature detection algorithms. </p>
<h2 class="groupheader">Typedef Documentation</h2>
<a class="anchor" id="ga69e18760fc6f819a5a7d5bec62f1c44e"></a>
<div class="memitem">
<div class="memproto">
      <table class="memname">
        <tr>
          <td class="memname">typedef std::pair&lt;<a class="el" href="classdouble.html">double</a>, boost::shared_ptr&lt;RawData&gt; &gt; MyMap</td>
        </tr>
      </table>
</div><div class="memdoc">

<p>A facade for various Superhirn <a class="el" href="classOpenMS_1_1FeatureFinder.html" title="The main feature finder class. ">FeatureFinder</a> classes. Use <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSH.html" title="The Superhirn FeatureFinderAlgorithm. ">FeatureFinderAlgorithmSH</a> instead. </p>

</div>
</div>
</div><!-- contents -->
<HR style="height:1px; border:none; border-top:1px solid #c0c0c0;">
<TABLE width="100%" border="0">
<TR>
<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:25 using doxygen 1.8.5</font></TD>
</TR>
</TABLE>
</BODY>
</HTML>