1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106
|
<HTML>
<HEAD>
<TITLE>RangeUtils</TITLE>
<LINK HREF="doxygen.css" REL="stylesheet" TYPE="text/css">
<LINK HREF="style_ini.css" REL="stylesheet" TYPE="text/css">
</HEAD>
<BODY BGCOLOR="#FFFFFF">
<A href="index.html">Home</A> ·
<A href="classes.html">Classes</A> ·
<A href="annotated.html">Annotated Classes</A> ·
<A href="modules.html">Modules</A> ·
<A href="functions_func.html">Members</A> ·
<A href="namespaces.html">Namespaces</A> ·
<A href="pages.html">Related Pages</A>
<HR style="height:1px; border:none; border-top:1px solid #c0c0c0;">
<!-- Generated by Doxygen 1.8.5 -->
</div><!-- top -->
<div class="header">
<div class="summary">
<a href="#nested-classes">Classes</a> </div>
<div class="headertitle">
<div class="title">RangeUtils<div class="ingroups"><a class="el" href="group__Kernel.html">Kernel</a></div></div> </div>
</div><!--header-->
<div class="contents">
<p>Predicates for range operations.
<a href="#details">More...</a></p>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
Classes</h2></td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1HasMetaValue.html">HasMetaValue< MetaContainer ></a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Predicate that determines if a class has a certain metavalue. <a href="classOpenMS_1_1HasMetaValue.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1InRTRange.html">InRTRange< SpectrumType ></a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Predicate that determines if a spectrum lies inside/outside a specific retention time range. <a href="classOpenMS_1_1InRTRange.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1InMSLevelRange.html">InMSLevelRange< SpectrumType ></a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Predicate that determines if a spectrum lies inside/outside a specific MS level set. <a href="classOpenMS_1_1InMSLevelRange.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1HasScanMode.html">HasScanMode< SpectrumType ></a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Predicate that determines if a spectrum has a certain scan mode. <a href="classOpenMS_1_1HasScanMode.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IsEmptySpectrum.html">IsEmptySpectrum< SpectrumType ></a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Predicate that determines if a spectrum is empty. <a href="classOpenMS_1_1IsEmptySpectrum.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IsZoomSpectrum.html">IsZoomSpectrum< SpectrumType ></a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Predicate that determines if a spectrum is a zoom (enhanced resolution) spectrum. <a href="classOpenMS_1_1IsZoomSpectrum.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1HasActivationMethod.html">HasActivationMethod< SpectrumType ></a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Predicate that determines if a spectrum was generated using any activation method given in the constructor list. <a href="classOpenMS_1_1HasActivationMethod.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1InPrecursorMZRange.html">InPrecursorMZRange< SpectrumType ></a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Predicate that determines if a spectrum's precursor is within a certain m/z range. <a href="classOpenMS_1_1InPrecursorMZRange.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1HasPrecursorCharge.html">HasPrecursorCharge< SpectrumType ></a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Predicate that determines if a spectrum has a certain precursor charge as given in the constructor list. <a href="classOpenMS_1_1HasPrecursorCharge.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1InMzRange.html">InMzRange< PeakType ></a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Predicate that determines if a peak lies inside/outside a specific m/z range. <a href="classOpenMS_1_1InMzRange.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1InIntensityRange.html">InIntensityRange< PeakType ></a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Predicate that determines if a peak lies inside/outside a specific intensity range. <a href="classOpenMS_1_1InIntensityRange.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IsInCollisionEnergyRange.html">IsInCollisionEnergyRange< SpectrumType ></a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Predicate that determines if an MSn spectrum was generated with a collision energy in the given range. <a href="classOpenMS_1_1IsInCollisionEnergyRange.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IsInIsolationWindowSizeRange.html">IsInIsolationWindowSizeRange< SpectrumType ></a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Predicate that determines if the width of the isolation window of an MSn spectrum is in the given range. <a href="classOpenMS_1_1IsInIsolationWindowSizeRange.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
</table>
<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<p>Predicates for range operations. </p>
<p>A group of predicates that can be used to perform range operations on MS data. They operate on classes that have the save interface as Spectrum or <a class="el" href="classOpenMS_1_1Peak1D.html" title="A 1-dimensional raw data point or peak. ">Peak1D</a> or <a class="el" href="classOpenMS_1_1Peak2D.html" title="A 2-dimensional raw data point or peak. ">Peak2D</a>, respectively. <br/>
<br/>
The code for the removal of spectra in a certain retention time range from a vector of spectra might look like this:</p>
<div class="fragment"><div class="line"><span class="comment">//data</span></div>
<div class="line">std::vector< MSSpectrum<> > spectra;</div>
<div class="line"></div>
<div class="line"><span class="comment">//... spectra are added to the vector ...</span></div>
<div class="line"></div>
<div class="line"><span class="comment">//range from 0.0 to 36.0 s</span></div>
<div class="line">InRTRange< MSSpectrum<> > range(0.0, 36.0);</div>
<div class="line"></div>
<div class="line"><span class="comment">//remove the range</span></div>
<div class="line">spectra.erase(remove_if(spectra.begin(), spectra.end(), range), spectra.end());</div>
</div><!-- fragment --><p>The code for the removal of peaks within certain intensity range from a spectrum might look like this:</p>
<div class="fragment"><div class="line"><span class="comment">//data</span></div>
<div class="line"><a class="code" href="classOpenMS_1_1MSSpectrum.html">MSSpectrum<></a> spectrum;</div>
<div class="line"></div>
<div class="line"><span class="comment">//... peaks are added to the spectrum ...</span></div>
<div class="line"></div>
<div class="line"><span class="comment">//range from 0.0 to 5000.0 intensity</span></div>
<div class="line">InIntensityRange range< Peak1D >(0.0, 5000.0);</div>
<div class="line"></div>
<div class="line"><span class="comment">//remove the range</span></div>
<div class="line">spectrum.erase(remove_if(spectrum.begin(), spectrum.end(), range), spectrum.end());</div>
</div><!-- fragment --> </div><!-- contents -->
<HR style="height:1px; border:none; border-top:1px solid #c0c0c0;">
<TABLE width="100%" border="0">
<TR>
<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:25 using doxygen 1.8.5</font></TD>
</TR>
</TABLE>
</BODY>
</HTML>
|