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<HTML>
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<div class="title">OpenMS Namespace Reference</div> </div>
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<p>Main OpenMS namespace.
<a href="#details">More...</a></p>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="namespaces"></a>
Namespaces</h2></td></tr>
<tr class="memitem:namespaceOpenMS_1_1Constants"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS_1_1Constants.html">Constants</a></td></tr>
<tr class="memdesc:namespaceOpenMS_1_1Constants"><td class="mdescLeft"> </td><td class="mdescRight">Mathematical and physical constants namespace. <br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:namespaceOpenMS_1_1DIAHelpers"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS_1_1DIAHelpers.html">DIAHelpers</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:namespaceOpenMS_1_1Exception"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS_1_1Exception.html">Exception</a></td></tr>
<tr class="memdesc:namespaceOpenMS_1_1Exception"><td class="mdescLeft"> </td><td class="mdescRight">Exception namespace <br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:namespaceOpenMS_1_1ims"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS_1_1ims.html">ims</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:namespaceOpenMS_1_1Interfaces"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS_1_1Interfaces.html">Interfaces</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:namespaceOpenMS_1_1Internal"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS_1_1Internal.html">Internal</a></td></tr>
<tr class="memdesc:namespaceOpenMS_1_1Internal"><td class="mdescLeft"> </td><td class="mdescRight">Namespace used to hide implementation details from users. <br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:namespaceOpenMS_1_1Logger"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS_1_1Logger.html">Logger</a></td></tr>
<tr class="memdesc:namespaceOpenMS_1_1Logger"><td class="mdescLeft"> </td><td class="mdescRight">Log streams. <br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:namespaceOpenMS_1_1Math"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS_1_1Math.html">Math</a></td></tr>
<tr class="memdesc:namespaceOpenMS_1_1Math"><td class="mdescLeft"> </td><td class="mdescRight">Math namespace. <br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:namespaceOpenMS_1_1NNLS"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS_1_1NNLS.html">NNLS</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:namespaceOpenMS_1_1OpenMSBoost"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS_1_1OpenMSBoost.html">OpenMSBoost</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:namespaceOpenMS_1_1OptimizationFunctions"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS_1_1OptimizationFunctions.html">OptimizationFunctions</a></td></tr>
<tr class="memdesc:namespaceOpenMS_1_1OptimizationFunctions"><td class="mdescLeft"> </td><td class="mdescRight">Namespace for all functions and classes needed for the gsl levenberg-marquard algorithm. <br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:namespaceOpenMS_1_1TargetedExperimentHelper"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS_1_1TargetedExperimentHelper.html">TargetedExperimentHelper</a></td></tr>
<tr class="memdesc:namespaceOpenMS_1_1TargetedExperimentHelper"><td class="mdescLeft"> </td><td class="mdescRight">This class stores helper structures that are used in multiple classes of the <a class="el" href="classOpenMS_1_1TargetedExperiment.html" title="This class stores an prediction of an SRM/MRM transition. ">TargetedExperiment</a> (e.g. <a class="el" href="classOpenMS_1_1ReactionMonitoringTransition.html" title="This class stores a SRM/MRM transition. ">ReactionMonitoringTransition</a> and <a class="el" href="classOpenMS_1_1IncludeExcludeTarget.html" title="This class stores a SRM/MRM transition. ">IncludeExcludeTarget</a>). <br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
Classes</h2></td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureDeconvolution.html">FeatureDeconvolution</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">An algorithm to decharge features (i.e. as found by <a class="el" href="classOpenMS_1_1FeatureFinder.html" title="The main feature finder class. ">FeatureFinder</a>). <a href="classOpenMS_1_1FeatureDeconvolution.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ILPDCWrapper.html">ILPDCWrapper</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1CompNovoIdentification.html">CompNovoIdentification</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">run with <a class="el" href="classOpenMS_1_1CompNovoIdentification.html" title="run with CompNovoIdentification ">CompNovoIdentification</a> <a href="classOpenMS_1_1CompNovoIdentification.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1CompNovoIdentificationBase.html">CompNovoIdentificationBase</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">run with <a class="el" href="classOpenMS_1_1CompNovoIdentificationBase.html" title="run with CompNovoIdentificationBase ">CompNovoIdentificationBase</a> <a href="classOpenMS_1_1CompNovoIdentificationBase.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1CompNovoIdentificationCID.html">CompNovoIdentificationCID</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">run with <a class="el" href="classOpenMS_1_1CompNovoIdentificationCID.html" title="run with CompNovoIdentificationCID ">CompNovoIdentificationCID</a> <a href="classOpenMS_1_1CompNovoIdentificationCID.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1CompNovoIonScoring.html">CompNovoIonScoring</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">run with <a class="el" href="classOpenMS_1_1CompNovoIonScoring.html" title="run with CompNovoIonScoring ">CompNovoIonScoring</a> <a href="classOpenMS_1_1CompNovoIonScoring.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1CompNovoIonScoringBase.html">CompNovoIonScoringBase</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">run with <a class="el" href="classOpenMS_1_1CompNovoIonScoringBase.html" title="run with CompNovoIonScoringBase ">CompNovoIonScoringBase</a> <a href="classOpenMS_1_1CompNovoIonScoringBase.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1CompNovoIonScoringCID.html">CompNovoIonScoringCID</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">run with <a class="el" href="classOpenMS_1_1CompNovoIonScoringCID.html" title="run with CompNovoIonScoringCID ">CompNovoIonScoringCID</a> <a href="classOpenMS_1_1CompNovoIonScoringCID.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DeNovoAlgorithm.html">DeNovoAlgorithm</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Base class for ion scoring implementation for de novo algorithms. <a href="classOpenMS_1_1DeNovoAlgorithm.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DeNovoIdentification.html">DeNovoIdentification</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Base class for de novo identification. <a href="classOpenMS_1_1DeNovoIdentification.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DeNovoIonScoring.html">DeNovoIonScoring</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Base class for ion scoring implementation for de novo algorithms. <a href="classOpenMS_1_1DeNovoIonScoring.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DeNovoPostScoring.html">DeNovoPostScoring</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Base class for ion scoring implementation for de novo algorithms. <a href="classOpenMS_1_1DeNovoPostScoring.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AccurateMassSearchResult.html">AccurateMassSearchResult</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AccurateMassSearchEngine.html">AccurateMassSearchEngine</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1ProbablePhosphoSites.html">ProbablePhosphoSites</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AScore.html">AScore</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Implementation of the Ascore For a given peptide sequence and its MS^2 spectrum it is tried to identify the most probable phosphorylation-site(s). For each phosphorylation site a score is calculated, which is an indicator for the probability that this site is phosphorylated. The algorithm is implemented according to Beausoleil et al. <a href="classOpenMS_1_1AScore.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConsensusID.html">ConsensusID</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Calculates a consensus ID from several ID runs. <a href="classOpenMS_1_1ConsensusID.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FalseDiscoveryRate.html">FalseDiscoveryRate</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Calculates an FDR from identifications. <a href="classOpenMS_1_1FalseDiscoveryRate.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1HMMState.html">HMMState</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Hidden Markov Model State class for the Hidden Markov Model. <a href="classOpenMS_1_1HMMState.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1HiddenMarkovModel.html">HiddenMarkovModel</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Hidden Markov Model implementation of PILIS. <a href="classOpenMS_1_1HiddenMarkovModel.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IDDecoyProbability.html">IDDecoyProbability</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1IDDecoyProbability.html" title="IDDecoyProbability calculates probabilities using decoy approach. ">IDDecoyProbability</a> calculates probabilities using decoy approach. <a href="classOpenMS_1_1IDDecoyProbability.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IDMapper.html">IDMapper</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Annotates an <a class="el" href="classOpenMS_1_1MSExperiment.html" title="Representation of a mass spectrometry experiment. ">MSExperiment</a>, <a class="el" href="classOpenMS_1_1FeatureMap.html" title="A container for features. ">FeatureMap</a> or <a class="el" href="classOpenMS_1_1ConsensusMap.html" title="A container for consensus elements. ">ConsensusMap</a> with peptide identifications. <a href="classOpenMS_1_1IDMapper.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IDRipper.html">IDRipper</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Ripping protein/peptide identification according their file origin. <a href="classOpenMS_1_1IDRipper.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PILISCrossValidation.html">PILISCrossValidation</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Implementation of a cross valdidation training for the PILIS model. <a href="classOpenMS_1_1PILISCrossValidation.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PILISIdentification.html">PILISIdentification</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">This class actually implements a complete <a class="el" href="classOpenMS_1_1ProteinIdentification.html" title="Representation of a protein identification run. ">ProteinIdentification</a> run with PILIS. <a href="classOpenMS_1_1PILISIdentification.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PILISModel.html">PILISModel</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">This class implements the simulation of the spectra from PILIS. <a href="classOpenMS_1_1PILISModel.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PILISModelGenerator.html">PILISModelGenerator</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">This class implements the simulation of the spectra from PILIS. <a href="classOpenMS_1_1PILISModelGenerator.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PILISNeutralLossModel.html">PILISNeutralLossModel</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">This class implements the simulation of the spectra from PILIS. <a href="classOpenMS_1_1PILISNeutralLossModel.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PILISScoring.html">PILISScoring</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">This class actually implements the E-value based scoring of PILIS. <a href="classOpenMS_1_1PILISScoring.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProtonDistributionModel.html">ProtonDistributionModel</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A proton distribution model to calculate the proton distribution over charged peptides. <a href="classOpenMS_1_1ProtonDistributionModel.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BaseGroupFinder.html">BaseGroupFinder</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">The base class of all element group finding algorithms. <a href="classOpenMS_1_1BaseGroupFinder.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BaseSuperimposer.html">BaseSuperimposer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">The base class of all superimposer algorithms. <a href="classOpenMS_1_1BaseSuperimposer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConsensusMapNormalizerAlgorithmMedian.html">ConsensusMapNormalizerAlgorithmMedian</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Algorithms of ConsensusMapNormalizer. <a href="classOpenMS_1_1ConsensusMapNormalizerAlgorithmMedian.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConsensusMapNormalizerAlgorithmQuantile.html">ConsensusMapNormalizerAlgorithmQuantile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Algorithms of ConsensusMapNormalizer. <a href="classOpenMS_1_1ConsensusMapNormalizerAlgorithmQuantile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConsensusMapNormalizerAlgorithmThreshold.html">ConsensusMapNormalizerAlgorithmThreshold</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Algorithms of ConsensusMapNormalizer. <a href="classOpenMS_1_1ConsensusMapNormalizerAlgorithmThreshold.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureDistance.html">FeatureDistance</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A functor class for the calculation of distances between features or consensus features. <a href="classOpenMS_1_1FeatureDistance.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureGroupingAlgorithm.html">FeatureGroupingAlgorithm</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Base class for all feature grouping algorithms. <a href="classOpenMS_1_1FeatureGroupingAlgorithm.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureGroupingAlgorithmIdentification.html">FeatureGroupingAlgorithmIdentification</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A map feature grouping algorithm for identified features. <a href="classOpenMS_1_1FeatureGroupingAlgorithmIdentification.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureGroupingAlgorithmLabeled.html">FeatureGroupingAlgorithmLabeled</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A map feature grouping algorithm for labeling techniques with two labels. <a href="classOpenMS_1_1FeatureGroupingAlgorithmLabeled.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureGroupingAlgorithmQT.html">FeatureGroupingAlgorithmQT</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A feature grouping algorithm for unlabeled data. <a href="classOpenMS_1_1FeatureGroupingAlgorithmQT.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureGroupingAlgorithmUnlabeled.html">FeatureGroupingAlgorithmUnlabeled</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A map feature grouping algorithm for unlabeled data. <a href="classOpenMS_1_1FeatureGroupingAlgorithmUnlabeled.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LabeledPairFinder.html">LabeledPairFinder</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">The <a class="el" href="classOpenMS_1_1LabeledPairFinder.html" title="The LabeledPairFinder allows the matching of labeled features (features with a fixed distance)...">LabeledPairFinder</a> allows the matching of labeled features (features with a fixed distance). <a href="classOpenMS_1_1LabeledPairFinder.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MapAlignmentAlgorithm.html">MapAlignmentAlgorithm</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Base class for all map-alignment algorithms. <a href="classOpenMS_1_1MapAlignmentAlgorithm.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MapAlignmentAlgorithmIdentification.html">MapAlignmentAlgorithmIdentification</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A map alignment algorithm based on peptide identifications from MS2 spectra. <a href="classOpenMS_1_1MapAlignmentAlgorithmIdentification.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MapAlignmentAlgorithmPoseClustering.html">MapAlignmentAlgorithmPoseClustering</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A map alignment algorithm based on pose clustering. <a href="classOpenMS_1_1MapAlignmentAlgorithmPoseClustering.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MapAlignmentAlgorithmSpectrumAlignment.html">MapAlignmentAlgorithmSpectrumAlignment</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A map alignment algorithm based on spectrum similarity (dynamic programming). <a href="classOpenMS_1_1MapAlignmentAlgorithmSpectrumAlignment.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MapAlignmentEvaluationAlgorithm.html">MapAlignmentEvaluationAlgorithm</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Base class for all Caap evaluation algorithms. <a href="classOpenMS_1_1MapAlignmentEvaluationAlgorithm.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MapAlignmentEvaluationAlgorithmPrecision.html">MapAlignmentEvaluationAlgorithmPrecision</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Caap evaluation algorithm to obtain a precision value. <a href="classOpenMS_1_1MapAlignmentEvaluationAlgorithmPrecision.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MapAlignmentEvaluationAlgorithmRecall.html">MapAlignmentEvaluationAlgorithmRecall</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Caap evaluation algorithm to obtain a recall value. <a href="classOpenMS_1_1MapAlignmentEvaluationAlgorithmRecall.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MapAlignmentTransformer.html">MapAlignmentTransformer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">The <a class="el" href="classOpenMS_1_1MapAlignmentTransformer.html" title="The MapAlignmentTransformer class. ">MapAlignmentTransformer</a> class. <a href="classOpenMS_1_1MapAlignmentTransformer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PoseClusteringAffineSuperimposer.html">PoseClusteringAffineSuperimposer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A superimposer that uses a voting scheme, also known as pose clustering, to find a good affine transformation. <a href="classOpenMS_1_1PoseClusteringAffineSuperimposer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PoseClusteringShiftSuperimposer.html">PoseClusteringShiftSuperimposer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A superimposer that uses a voting scheme, also known as pose clustering, to find a good shift transformation. <a href="classOpenMS_1_1PoseClusteringShiftSuperimposer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1QTClusterFinder.html">QTClusterFinder</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A variant of QT clustering for the detection of feature groups. <a href="classOpenMS_1_1QTClusterFinder.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SimplePairFinder.html">SimplePairFinder</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">This class implements a simple point pair finding algorithm. <a href="classOpenMS_1_1SimplePairFinder.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1StablePairFinder.html">StablePairFinder</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">This class implements a pair finding algorithm for consensus features. <a href="classOpenMS_1_1StablePairFinder.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TransformationDescription.html">TransformationDescription</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Generic description of a coordinate transformation. <a href="classOpenMS_1_1TransformationDescription.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TransformationModel.html">TransformationModel</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Base class for transformation models. <a href="classOpenMS_1_1TransformationModel.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TransformationModelLinear.html">TransformationModelLinear</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Linear model for transformations. <a href="classOpenMS_1_1TransformationModelLinear.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TransformationModelInterpolated.html">TransformationModelInterpolated</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Interpolation model for transformations. <a href="classOpenMS_1_1TransformationModelInterpolated.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TransformationModelBSpline.html">TransformationModelBSpline</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">B-spline model for transformations. <a href="classOpenMS_1_1TransformationModelBSpline.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MRMFragmentSelection.html">MRMFragmentSelection</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">This class can select appropriate fragment ions of an MS/MS spectrum of a peptide. <a href="classOpenMS_1_1MRMFragmentSelection.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ReactionMonitoringTransition.html">ReactionMonitoringTransition</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">This class stores a SRM/MRM transition. <a href="classOpenMS_1_1ReactionMonitoringTransition.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1CachedmzML.html">CachedmzML</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">An class that uses on-disk caching to read and write spectra and chromatograms. <a href="classOpenMS_1_1CachedmzML.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ChromatogramExtractor.html">ChromatogramExtractor</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">The <a class="el" href="classOpenMS_1_1ChromatogramExtractor.html" title="The ChromatogramExtractor extracts chromatograms from a mzML file. ">ChromatogramExtractor</a> extracts chromatograms from a mzML file. <a href="classOpenMS_1_1ChromatogramExtractor.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConfidenceScoring.html">ConfidenceScoring</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1OpenSwathDataAccessHelper.html">OpenSwathDataAccessHelper</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Several helpers to convert <a class="el" href="namespaceOpenMS.html" title="Main OpenMS namespace. ">OpenMS</a> datastructures to structures that implement the OpenSWATH interfaces. <a href="classOpenMS_1_1OpenSwathDataAccessHelper.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureOpenMS.html">FeatureOpenMS</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">An implementation of the OpenSWATH <a class="el" href="classOpenMS_1_1Feature.html" title="An LC-MS feature. ">Feature</a> Access interface using <a class="el" href="namespaceOpenMS.html" title="Main OpenMS namespace. ">OpenMS</a>. <a href="classOpenMS_1_1FeatureOpenMS.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MRMFeatureOpenMS.html">MRMFeatureOpenMS</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">An implementation of the OpenSWATH MRM <a class="el" href="classOpenMS_1_1Feature.html" title="An LC-MS feature. ">Feature</a> Access interface using <a class="el" href="namespaceOpenMS.html" title="Main OpenMS namespace. ">OpenMS</a>. <a href="classOpenMS_1_1MRMFeatureOpenMS.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TransitionGroupOpenMS.html">TransitionGroupOpenMS</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">An implementation of the OpenSWATH Transition Group Access interface using <a class="el" href="namespaceOpenMS.html" title="Main OpenMS namespace. ">OpenMS</a>. <a href="classOpenMS_1_1TransitionGroupOpenMS.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SignalToNoiseOpenMS.html">SignalToNoiseOpenMS</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">An implementation of the OpenSWATH SignalToNoise Access interface using <a class="el" href="namespaceOpenMS.html" title="Main OpenMS namespace. ">OpenMS</a>. <a href="classOpenMS_1_1SignalToNoiseOpenMS.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SimpleOpenMSSpectraFactory.html">SimpleOpenMSSpectraFactory</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A factory method that returns two ISpectrumAccess implementations. <a href="classOpenMS_1_1SimpleOpenMSSpectraFactory.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumAccessOpenMS.html">SpectrumAccessOpenMS</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">An implementation of the OpenSWATH Spectrum Access interface using <a class="el" href="namespaceOpenMS.html" title="Main OpenMS namespace. ">OpenMS</a>. <a href="classOpenMS_1_1SpectrumAccessOpenMS.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumAccessOpenMSCached.html">SpectrumAccessOpenMSCached</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">An implementation of the OpenSWATH Spectrum Access interface using Disk caching. <a href="classOpenMS_1_1SpectrumAccessOpenMSCached.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DiaPrescore.html">DiaPrescore</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Scoring of an spectrum given library intensities of a transition group. <a href="classOpenMS_1_1DiaPrescore.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DIAScoring.html">DIAScoring</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Scoring of an spectrum at the peak apex of an chromatographic elution peak. <a href="classOpenMS_1_1DIAScoring.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MRMDecoy.html">MRMDecoy</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">This class generates a <a class="el" href="classOpenMS_1_1TargetedExperiment.html" title="This class stores an prediction of an SRM/MRM transition. ">TargetedExperiment</a> object with decoys based on a <a class="el" href="classOpenMS_1_1TargetedExperiment.html" title="This class stores an prediction of an SRM/MRM transition. ">TargetedExperiment</a> object. <a href="classOpenMS_1_1MRMDecoy.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1OpenSwath__Scores.html">OpenSwath_Scores</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A structure to hold the different scores computed by the <a class="el" href="classOpenMS_1_1FeatureFinder.html" title="The main feature finder class. ">FeatureFinder</a>. <a href="structOpenMS_1_1OpenSwath__Scores.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MRMFeatureFinderScoring.html">MRMFeatureFinderScoring</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">The MRMFeatureFinder finds and scores peaks of transitions that coelute. <a href="classOpenMS_1_1MRMFeatureFinderScoring.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MRMRTNormalizer.html">MRMRTNormalizer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">The <a class="el" href="classOpenMS_1_1MRMRTNormalizer.html" title="The MRMRTNormalizer will find retention time peptides in data. ">MRMRTNormalizer</a> will find retention time peptides in data. <a href="classOpenMS_1_1MRMRTNormalizer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MRMTransitionGroupPicker.html">MRMTransitionGroupPicker</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">The <a class="el" href="classOpenMS_1_1MRMTransitionGroupPicker.html" title="The MRMTransitionGroupPicker finds peaks in chromatograms that belong to the same precursors...">MRMTransitionGroupPicker</a> finds peaks in chromatograms that belong to the same precursors. <a href="classOpenMS_1_1MRMTransitionGroupPicker.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1OpenSwathHelper.html">OpenSwathHelper</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A helper class that is used by several OpenSWATH tools. <a href="classOpenMS_1_1OpenSwathHelper.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumAddition.html">SpectrumAddition</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">The <a class="el" href="classOpenMS_1_1SpectrumAddition.html" title="The SpectrumAddition adds together a list of spectra. ">SpectrumAddition</a> adds together a list of spectra. <a href="classOpenMS_1_1SpectrumAddition.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TransitionTSVReader.html">TransitionTSVReader</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">This class can convert TraML and TSV files into each other. <a href="classOpenMS_1_1TransitionTSVReader.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LocalLinearMap.html">LocalLinearMap</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Trained Local Linear Map (LLM) model for peak intensity prediction. <a href="classOpenMS_1_1LocalLinearMap.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeakIntensityPredictor.html">PeakIntensityPredictor</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Predict peak heights of peptides based on Local Linear Map model. <a href="classOpenMS_1_1PeakIntensityPredictor.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IsobaricChannelExtractor.html">IsobaricChannelExtractor</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Extracts individual channels from MS/MS spectra for isobaric labeling experiments. <a href="classOpenMS_1_1IsobaricChannelExtractor.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IsobaricIsotopeCorrector.html">IsobaricIsotopeCorrector</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Performs isotope impurity correction on the intensities extracted from an isobaric labeling experiment. <a href="classOpenMS_1_1IsobaricIsotopeCorrector.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IsobaricNormalizer.html">IsobaricNormalizer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Performs median normalization on the extracted ratios of isobaric labeling experiment. <a href="classOpenMS_1_1IsobaricNormalizer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IsobaricQuantifier.html">IsobaricQuantifier</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Given the extracted channel intensities the <a class="el" href="classOpenMS_1_1IsobaricQuantifier.html" title="Given the extracted channel intensities the IsobaricQuantifier corrects and normalizes the intensitie...">IsobaricQuantifier</a> corrects and normalizes the intensities for further processing. <a href="classOpenMS_1_1IsobaricQuantifier.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1IsobaricQuantifierStatistics.html">IsobaricQuantifierStatistics</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Statistics for quantitation performance and comparison of <a class="el" href="namespaceOpenMS_1_1NNLS.html">NNLS</a> vs. naive method (aka matrix inversion) <a href="structOpenMS_1_1IsobaricQuantifierStatistics.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IsobaricQuantitationMethod.html">IsobaricQuantitationMethod</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Abstract base class describing an isobaric quantitation method in terms of the used channels and an isotope correction matrix. <a href="classOpenMS_1_1IsobaricQuantitationMethod.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ItraqChannelExtractor.html">ItraqChannelExtractor</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">[experimental class] extracts the iTRAQ channels from tandem MS data and stores intensity values in a consensus map <a href="classOpenMS_1_1ItraqChannelExtractor.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ItraqConstants.html">ItraqConstants</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Some constants used throughout iTRAQ classes. <a href="classOpenMS_1_1ItraqConstants.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ItraqEightPlexQuantitationMethod.html">ItraqEightPlexQuantitationMethod</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">iTRAQ 8 plex quantitation to be used with the IsobaricQuantitation. <a href="classOpenMS_1_1ItraqEightPlexQuantitationMethod.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ItraqFourPlexQuantitationMethod.html">ItraqFourPlexQuantitationMethod</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">iTRAQ 4 plex quantitation to be used with the IsobaricQuantitation. <a href="classOpenMS_1_1ItraqFourPlexQuantitationMethod.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ItraqQuantifier.html">ItraqQuantifier</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Does post-processing on raw iTRAQ channel quantitation. <a href="classOpenMS_1_1ItraqQuantifier.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeptideAndProteinQuant.html">PeptideAndProteinQuant</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Helper class for peptide and protein quantification based on feature data annotated with IDs. <a href="classOpenMS_1_1PeptideAndProteinQuant.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProteinInference.html">ProteinInference</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">[experimental class] given a peptide quantitation, infer corresponding protein quantities <a href="classOpenMS_1_1ProteinInference.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProteinResolver.html">ProteinResolver</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Helper class for peptide and protein quantification based on feature data annotated with IDs. <a href="classOpenMS_1_1ProteinResolver.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1QuantitativeExperimentalDesign.html">QuantitativeExperimentalDesign</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Merge files according to experimental design. <a href="classOpenMS_1_1QuantitativeExperimentalDesign.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TMTSixPlexQuantitationMethod.html">TMTSixPlexQuantitationMethod</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">TMT 6plex quantitation to be used with the IsobaricQuantitation. <a href="classOpenMS_1_1TMTSixPlexQuantitationMethod.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1SVMData.html">SVMData</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Data structure used in <a class="el" href="classOpenMS_1_1SVMWrapper.html" title="Serves as a wrapper for the libsvm. ">SVMWrapper</a>. <a href="structOpenMS_1_1SVMData.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SVMWrapper.html">SVMWrapper</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Serves as a wrapper for the libsvm. <a href="classOpenMS_1_1SVMWrapper.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IncludeExcludeTarget.html">IncludeExcludeTarget</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">This class stores a SRM/MRM transition. <a href="classOpenMS_1_1IncludeExcludeTarget.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1InclusionExclusionList.html">InclusionExclusionList</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Provides functionalty for writing inclusion or exclusion lists. <a href="classOpenMS_1_1InclusionExclusionList.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1OfflinePrecursorIonSelection.html">OfflinePrecursorIonSelection</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Implements different algorithms for precursor ion selection. <a href="classOpenMS_1_1OfflinePrecursorIonSelection.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PrecursorIonSelection.html">PrecursorIonSelection</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">This class implements different precursor ion selection strategies. <a href="classOpenMS_1_1PrecursorIonSelection.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PrecursorIonSelectionPreprocessing.html">PrecursorIonSelectionPreprocessing</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">This class implements the database preprocessing needing for precursor ion selection. <a href="classOpenMS_1_1PrecursorIonSelectionPreprocessing.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PSLPFormulation.html">PSLPFormulation</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Implements ILP formulation of precursor selection problems. <a href="classOpenMS_1_1PSLPFormulation.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PSProteinInference.html">PSProteinInference</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">This class implements protein inference for the precursor ion selection strategies. <a href="classOpenMS_1_1PSProteinInference.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TargetedExperiment.html">TargetedExperiment</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">This class stores an prediction of an SRM/MRM transition. <a href="classOpenMS_1_1TargetedExperiment.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConsoleUtils.html">ConsoleUtils</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1INIUpdater.html">INIUpdater</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1ParameterInformation.html">ParameterInformation</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Struct that captures all information of a command line parameter. <a href="structOpenMS_1_1ParameterInformation.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ToolHandler.html">ToolHandler</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPBase.html">TOPPBase</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Base class for TOPP applications. <a href="classOpenMS_1_1TOPPBase.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AAIndex.html">AAIndex</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Representation of selected AAIndex properties. <a href="classOpenMS_1_1AAIndex.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AASequence.html">AASequence</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Representation of a peptide/protein sequence. <a href="classOpenMS_1_1AASequence.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html">EdwardsLippertIterator</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">finds all Peptide Candidates with given masses and given fasta file <a href="classOpenMS_1_1EdwardsLippertIterator.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EdwardsLippertIteratorTryptic.html">EdwardsLippertIteratorTryptic</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1EdwardsLippertIterator.html" title="finds all Peptide Candidates with given masses and given fasta file ">EdwardsLippertIterator</a> that only retrieves tryptic seqences. <a href="classOpenMS_1_1EdwardsLippertIteratorTryptic.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Element.html">Element</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Representation of an element. <a href="classOpenMS_1_1Element.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ElementDB.html">ElementDB</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Stores elements. <a href="classOpenMS_1_1ElementDB.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EmpiricalFormula.html">EmpiricalFormula</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Representation of an empirical formula. <a href="classOpenMS_1_1EmpiricalFormula.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EnzymaticDigestion.html">EnzymaticDigestion</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class for the enzymatic digestion of proteins. <a href="classOpenMS_1_1EnzymaticDigestion.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IsotopeDistribution.html">IsotopeDistribution</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Isotope distribution class. <a href="classOpenMS_1_1IsotopeDistribution.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MassDecomposition.html">MassDecomposition</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class represents a decomposition of a mass into amino acids. <a href="classOpenMS_1_1MassDecomposition.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MassDecompositionAlgorithm.html">MassDecompositionAlgorithm</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Mass decomposition algorithm, given a mass it suggests possible compositions. <a href="classOpenMS_1_1MassDecompositionAlgorithm.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModificationDefinition.html">ModificationDefinition</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Representation of modification definition. <a href="classOpenMS_1_1ModificationDefinition.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModificationDefinitionsSet.html">ModificationDefinitionsSet</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Representation of a set of modification definitions. <a href="classOpenMS_1_1ModificationDefinitionsSet.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModificationsDB.html">ModificationsDB</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">database which holds all residue modifications from UniMod <a href="classOpenMS_1_1ModificationsDB.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModifierRep.html">ModifierRep</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Implements modification for suffix arrays. <a href="classOpenMS_1_1ModifierRep.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PepIterator.html">PepIterator</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Abstract base class for different peptide iterators. <a href="classOpenMS_1_1PepIterator.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Residue.html">Residue</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Representation of a residue. <a href="classOpenMS_1_1Residue.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ResidueDB.html">ResidueDB</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">residue data base which holds residues <a href="classOpenMS_1_1ResidueDB.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ResidueModification.html">ResidueModification</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Representation of a modification. <a href="classOpenMS_1_1ResidueModification.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SvmTheoreticalSpectrumGenerator.html">SvmTheoreticalSpectrumGenerator</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Simulates ms2 spectra with support vector machines. <a href="classOpenMS_1_1SvmTheoreticalSpectrumGenerator.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SvmTheoreticalSpectrumGeneratorSet.html">SvmTheoreticalSpectrumGeneratorSet</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Loads <a class="el" href="classOpenMS_1_1SvmTheoreticalSpectrumGenerator.html" title="Simulates ms2 spectra with support vector machines. ">SvmTheoreticalSpectrumGenerator</a> instances for different charges. <a href="classOpenMS_1_1SvmTheoreticalSpectrumGeneratorSet.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SvmTheoreticalSpectrumGeneratorTrainer.html">SvmTheoreticalSpectrumGeneratorTrainer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Train SVM models that are used by <a class="el" href="classOpenMS_1_1SvmTheoreticalSpectrumGenerator.html" title="Simulates ms2 spectra with support vector machines. ">SvmTheoreticalSpectrumGenerator</a>. <a href="classOpenMS_1_1SvmTheoreticalSpectrumGeneratorTrainer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TheoreticalSpectrumGenerator.html">TheoreticalSpectrumGenerator</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Generates theoretical spectra with various options. <a href="classOpenMS_1_1TheoreticalSpectrumGenerator.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TrypticIterator.html">TrypticIterator</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">finds all tryptic Peptides with every missed cleavage <a href="classOpenMS_1_1TrypticIterator.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1WeightWrapper.html">WeightWrapper</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Encapsulated weight queries to simplify mono vs average weight computation. <a href="classOpenMS_1_1WeightWrapper.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AverageLinkage.html">AverageLinkage</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1AverageLinkage.html" title="AverageLinkage ClusterMethod. ">AverageLinkage</a> ClusterMethod. <a href="classOpenMS_1_1AverageLinkage.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ClusterAnalyzer.html">ClusterAnalyzer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Bundles analyzing tools for a clustering (given as sequence of <a class="el" href="classOpenMS_1_1BinaryTreeNode.html" title="Elements of a binary tree used to represent a hierarchical clustering process. ">BinaryTreeNode</a>'s) <a href="classOpenMS_1_1ClusterAnalyzer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ClusterFunctor.html">ClusterFunctor</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Base class for cluster functors. <a href="classOpenMS_1_1ClusterFunctor.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ClusterHierarchical.html">ClusterHierarchical</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Hierarchical clustering with generic clustering functions. <a href="classOpenMS_1_1ClusterHierarchical.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1UnnormalizedComparator.html">UnnormalizedComparator</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="namespaceOpenMS_1_1Exception.html" title="Exception namespace ">Exception</a> thrown if clustering is attempted without a normalized compare functor. <a href="classOpenMS_1_1UnnormalizedComparator.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1CompleteLinkage.html">CompleteLinkage</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1CompleteLinkage.html" title="CompleteLinkage ClusterMethod. ">CompleteLinkage</a> ClusterMethod. <a href="classOpenMS_1_1CompleteLinkage.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EuclideanSimilarity.html">EuclideanSimilarity</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">CompareFunctor for 2Dpoints. <a href="classOpenMS_1_1EuclideanSimilarity.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1HashGrid.html">HashGrid</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Container for (2-dimensional coordinate, value) pairs. <a href="classOpenMS_1_1HashGrid.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1HierarchicalClustering.html">HierarchicalClustering</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Generic 2-dimensional hierarchical clustering with geometric hashing. <a href="classOpenMS_1_1HierarchicalClustering.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SILACClustering.html">SILACClustering</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Clustering implementation for SILAC stuff. <a href="classOpenMS_1_1SILACClustering.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SingleLinkage.html">SingleLinkage</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1SingleLinkage.html" title="SingleLinkage ClusterMethod. ">SingleLinkage</a> ClusterMethod. <a href="classOpenMS_1_1SingleLinkage.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BinnedSharedPeakCount.html">BinnedSharedPeakCount</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Compare functor scoring the shared peaks for similarity measurement. <a href="classOpenMS_1_1BinnedSharedPeakCount.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BinnedSpectralContrastAngle.html">BinnedSpectralContrastAngle</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Compare functor scoring the spectral contrast angle for similarity measurement. <a href="classOpenMS_1_1BinnedSpectralContrastAngle.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BinnedSpectrum.html">BinnedSpectrum</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">This is a binned representation of a PeakSpectrum. <a href="classOpenMS_1_1BinnedSpectrum.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BinnedSpectrumCompareFunctor.html">BinnedSpectrumCompareFunctor</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Base class for compare functors of BinnedSpectra. <a href="classOpenMS_1_1BinnedSpectrumCompareFunctor.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BinnedSumAgreeingIntensities.html">BinnedSumAgreeingIntensities</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Compare functor scoring the sum of agreeing intensities for similarity measurement. <a href="classOpenMS_1_1BinnedSumAgreeingIntensities.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1CompareFouriertransform.html">CompareFouriertransform</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Compare Discrete Cosines value from a Fourier transformation, also known as Discrete Cosines Transformation. <a href="classOpenMS_1_1CompareFouriertransform.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeakAlignment.html">PeakAlignment</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">make a <a class="el" href="classOpenMS_1_1PeakAlignment.html" title="make a PeakAlignment of two PeakSpectra ">PeakAlignment</a> of two PeakSpectra <a href="classOpenMS_1_1PeakAlignment.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeakSpectrumCompareFunctor.html">PeakSpectrumCompareFunctor</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Base class for compare functors of spectra, that return a similiarity value for two spectra. <a href="classOpenMS_1_1PeakSpectrumCompareFunctor.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectraSTSimilarityScore.html">SpectraSTSimilarityScore</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Similarity score of SpectraST. <a href="classOpenMS_1_1SpectraSTSimilarityScore.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumAlignment.html">SpectrumAlignment</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Aligns the peaks of two spectra. <a href="classOpenMS_1_1SpectrumAlignment.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumAlignmentScore.html">SpectrumAlignmentScore</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Similarity score via spectra alignment. <a href="classOpenMS_1_1SpectrumAlignmentScore.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumCheapDPCorr.html">SpectrumCheapDPCorr</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1SpectrumCheapDPCorr.html" title="SpectrumCheapDPCorr calculates an optimal alignment on stick spectra. ">SpectrumCheapDPCorr</a> calculates an optimal alignment on stick spectra. <a href="classOpenMS_1_1SpectrumCheapDPCorr.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumPrecursorComparator.html">SpectrumPrecursorComparator</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1SpectrumPrecursorComparator.html" title="SpectrumPrecursorComparator compares just the parent mass of two spectra. ">SpectrumPrecursorComparator</a> compares just the parent mass of two spectra. <a href="classOpenMS_1_1SpectrumPrecursorComparator.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SteinScottImproveScore.html">SteinScottImproveScore</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Similarity score based of Stein & Scott. <a href="classOpenMS_1_1SteinScottImproveScore.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ZhangSimilarityScore.html">ZhangSimilarityScore</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Similarity score of Zhang. <a href="classOpenMS_1_1ZhangSimilarityScore.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BinaryComposeFunctionAdapter.html">BinaryComposeFunctionAdapter</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Represents the binary compose function object adapter. <a href="classOpenMS_1_1BinaryComposeFunctionAdapter.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Factory.html">Factory</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Returns FactoryProduct* based on the name of the desired concrete FactoryProduct. <a href="classOpenMS_1_1Factory.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FactoryBase.html">FactoryBase</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Base class for Factory<T> <a href="classOpenMS_1_1FactoryBase.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FuzzyStringComparator.html">FuzzyStringComparator</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Fuzzy comparison of strings, tolerates numeric differences. <a href="classOpenMS_1_1FuzzyStringComparator.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LogConfigHandler.html">LogConfigHandler</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">The <a class="el" href="classOpenMS_1_1LogConfigHandler.html" title="The LogConfigHandler provides the functionality to configure the internal logging of OpenMS algorithm...">LogConfigHandler</a> provides the functionality to configure the internal logging of <a class="el" href="namespaceOpenMS.html" title="Main OpenMS namespace. ">OpenMS</a> algorithms that use the global instances of LogStream. <a href="classOpenMS_1_1LogConfigHandler.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProgressLogger.html">ProgressLogger</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Base class for all classes that want to report their progess. <a href="classOpenMS_1_1ProgressLogger.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SingletonRegistry.html">SingletonRegistry</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Holds pointers to unique instance of a singleton factory. <a href="classOpenMS_1_1SingletonRegistry.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1StreamHandler.html">StreamHandler</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Provides a central class to register globally used output streams. Currently supported streams are. <a href="classOpenMS_1_1StreamHandler.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1PrecisionWrapper.html">PrecisionWrapper</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Wrapper class to implement output with appropriate precision. See <a class="el" href="namespaceOpenMS.html#af27ce8637a6a7cc24cc6fcbd3358791d" title="Wrapper function that sets the appropriate precision for output temporarily. The original precision i...">precisionWrapper()</a>. <a href="structOpenMS_1_1PrecisionWrapper.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1UnaryComposeFunctionAdapter.html">UnaryComposeFunctionAdapter</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Represents the function object unary adapter. <a href="classOpenMS_1_1UnaryComposeFunctionAdapter.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1UniqueIdGenerator.html">UniqueIdGenerator</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A generator for unique ids. <a href="classOpenMS_1_1UniqueIdGenerator.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1UniqueIdIndexer.html">UniqueIdIndexer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A base class for random access containers for classes derived from <a class="el" href="classOpenMS_1_1UniqueIdInterface.html" title="A base class defining a common interface for all classes having a unique id. ">UniqueIdInterface</a> that adds functionality to convert a unique id into an index into the container. <a href="classOpenMS_1_1UniqueIdIndexer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1UniqueIdInterface.html">UniqueIdInterface</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A base class defining a common interface for all classes having a unique id. <a href="classOpenMS_1_1UniqueIdInterface.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1VersionInfo.html">VersionInfo</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Version information class. <a href="classOpenMS_1_1VersionInfo.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Adduct.html">Adduct</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BigString.html">BigString</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">concatenates Proteins given as FASTAEntry to one big string separated by a unique character (by default $) <a href="classOpenMS_1_1BigString.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BinaryTreeNode.html">BinaryTreeNode</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Elements of a binary tree used to represent a hierarchical clustering process. <a href="classOpenMS_1_1BinaryTreeNode.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ChargePair.html">ChargePair</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Representation of a (putative) link between two Features, which stem from the same compound but have different charge (including different adduct ions (H+, Na+, ..) <a href="classOpenMS_1_1ChargePair.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Compomer.html">Compomer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Holds information on an edge connecting two features from a (putative) charge ladder. <a href="classOpenMS_1_1Compomer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConstRefVector.html">ConstRefVector</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">This vector holds pointer to the elements of another container. <a href="classOpenMS_1_1ConstRefVector.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConvexHull2D.html">ConvexHull2D</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A 2-dimensional hull representation in [counter]clockwise direction - depending on axis labelling. <a href="classOpenMS_1_1ConvexHull2D.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1CVMappingRule.html">CVMappingRule</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Representation of a CV Mapping rule used by <a class="el" href="classOpenMS_1_1CVMappings.html" title="Representation of controlled vocabulary mapping rules (for PSI formats) ">CVMappings</a>. <a href="classOpenMS_1_1CVMappingRule.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1CVMappings.html">CVMappings</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Representation of controlled vocabulary mapping rules (for PSI formats) <a href="classOpenMS_1_1CVMappings.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1CVMappingTerm.html">CVMappingTerm</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Representation of controlled vocabulary term. <a href="classOpenMS_1_1CVMappingTerm.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1CVReference.html">CVReference</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Controlled Vocabulary Reference. <a href="classOpenMS_1_1CVReference.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DataValue.html">DataValue</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class to hold strings, numeric values, lists of strings and lists of numeric values. <a href="classOpenMS_1_1DataValue.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Date.html">Date</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1Date.html" title="Date Class. ">Date</a> Class. <a href="classOpenMS_1_1Date.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DateTime.html">DateTime</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1DateTime.html" title="DateTime Class. ">DateTime</a> Class. <a href="classOpenMS_1_1DateTime.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DBoundingBox.html">DBoundingBox</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A D-dimensional bounding box. <a href="classOpenMS_1_1DBoundingBox.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DefaultParamHandler.html">DefaultParamHandler</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A base class for all classes handling default parameters. <a href="classOpenMS_1_1DefaultParamHandler.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DistanceMatrix.html">DistanceMatrix</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A two-dimensional distance matrix, similar to <a class="el" href="classOpenMS_1_1Matrix.html" title="A two-dimensional matrix. Similar to std::vector, but uses a binary operator(,) for element access...">OpenMS::Matrix</a>. <a href="classOpenMS_1_1DistanceMatrix.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DoubleList.html">DoubleList</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">DoubleReal list. <a href="classOpenMS_1_1DoubleList.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DPosition.html">DPosition</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Representation of a coordinate in D-dimensional space. <a href="classOpenMS_1_1DPosition.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DRange.html">DRange</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A D-dimensional half-open interval. <a href="classOpenMS_1_1DRange.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1GridFeature.html">GridFeature</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Representation of a feature in a hash grid. <a href="classOpenMS_1_1GridFeature.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IntList.html">IntList</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Int list. <a href="classOpenMS_1_1IntList.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1IsotopeCluster.html">IsotopeCluster</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Stores information about an isotopic cluster (i.e. potential peptide charge variants) <a href="structOpenMS_1_1IsotopeCluster.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LPWrapper.html">LPWrapper</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Map.html">Map</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1Map.html" title="Map class based on the STL map (containing serveral convenience functions) ">Map</a> class based on the STL map (containing serveral convenience functions) <a href="classOpenMS_1_1Map.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MassExplainer.html">MassExplainer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">computes empirical formulas for given mass differences using a set of allowed elements <a href="classOpenMS_1_1MassExplainer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Matrix.html">Matrix</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A two-dimensional matrix. Similar to std::vector, but uses a binary operator(,) for element access. <a href="classOpenMS_1_1Matrix.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Param.html">Param</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Management and storage of parameters / INI files. <a href="classOpenMS_1_1Param.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1QTCluster.html">QTCluster</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A representation of a QT cluster used for feature grouping. <a href="classOpenMS_1_1QTCluster.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SparseVector.html">SparseVector</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1SparseVector.html" title="SparseVector implementation. The container will not actually store a specified type of element - the ...">SparseVector</a> implementation. The container will not actually store a specified type of element - the sparse element, e.g. zero (by default) <a href="classOpenMS_1_1SparseVector.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1String.html">String</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A more convenient string class. <a href="classOpenMS_1_1String.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1StringList.html">StringList</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1String.html" title="A more convenient string class. ">String</a> list. <a href="classOpenMS_1_1StringList.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SuffixArray.html">SuffixArray</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">abstract class for suffix array <a href="classOpenMS_1_1SuffixArray.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SuffixArrayPeptideFinder.html">SuffixArrayPeptideFinder</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">wrapper for easy use of sufArray <a href="classOpenMS_1_1SuffixArrayPeptideFinder.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SuffixArraySeqan.html">SuffixArraySeqan</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class that uses SEQAN library for a suffix array. It can be used to find peptide Candidates for a MS spectrum. <a href="classOpenMS_1_1SuffixArraySeqan.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SuffixArrayTrypticCompressed.html">SuffixArrayTrypticCompressed</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class that implements a suffix array for a <a class="el" href="classOpenMS_1_1String.html" title="A more convenient string class. ">String</a>. It can be used to find peptide Candidates for a MS spectrum. <a href="classOpenMS_1_1SuffixArrayTrypticCompressed.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SuffixArrayTrypticSeqan.html">SuffixArrayTrypticSeqan</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class that uses SEQAN library for a suffix array. It can be used to find peptide Candidates for a MS spectrum. <a href="classOpenMS_1_1SuffixArrayTrypticSeqan.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MorphologicalFilter.html">MorphologicalFilter</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">This class implements baseline filtering operations using methods from mathematical morphology. <a href="classOpenMS_1_1MorphologicalFilter.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1InternalCalibration.html">InternalCalibration</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A simple calibration method using linear interpolation of given reference masses. <a href="classOpenMS_1_1InternalCalibration.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOFCalibration.html">TOFCalibration</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">This class implements an external calibration for TOF data using external calibrant spectra. <a href="classOpenMS_1_1TOFCalibration.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DataFilters.html">DataFilters</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structOpenMS_1_1DataFilters_1_1DataFilter.html" title="Representation of a peak/feature filter combining FilterType, FilterOperation and a value...">DataFilter</a> array providing some convenience functions. <a href="classOpenMS_1_1DataFilters.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ElutionPeakDetection.html">ElutionPeakDetection</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Extracts chromatographic peaks from a mass trace. <a href="classOpenMS_1_1ElutionPeakDetection.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1CmpMassTraceByMZ.html">CmpMassTraceByMZ</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Method for the assembly of mass traces belonging to the same isotope pattern, i.e., that are compatible in retention times, mass-to-charge ratios, and isotope abundances. <a href="classOpenMS_1_1CmpMassTraceByMZ.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureHypothesis.html">FeatureHypothesis</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1CmpHypothesesByScore.html">CmpHypothesesByScore</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureFindingMetabo.html">FeatureFindingMetabo</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IsotopeDistributionCache.html">IsotopeDistributionCache</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Prealculate isotope distributions for interesting mass ranges. <a href="classOpenMS_1_1IsotopeDistributionCache.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MassTraceDetection.html">MassTraceDetection</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A mass trace extraction method that gathers peaks similar in m/z and moving along retention time. <a href="classOpenMS_1_1MassTraceDetection.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SILACAnalyzer.html">SILACAnalyzer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Algorithm to use for SILACAnalysis. <a href="classOpenMS_1_1SILACAnalyzer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SILACFilter.html">SILACFilter</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Filter to use for <a class="el" href="classOpenMS_1_1SILACFiltering.html" title="Filtering for SILAC data. ">SILACFiltering</a>. <a href="classOpenMS_1_1SILACFilter.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SILACFiltering.html">SILACFiltering</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Filtering for SILAC data. <a href="classOpenMS_1_1SILACFiltering.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SILACPattern.html">SILACPattern</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A single SILAC pattern containing multiple found points. <a href="classOpenMS_1_1SILACPattern.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SILACPoint.html">SILACPoint</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A single SILAC point. <a href="classOpenMS_1_1SILACPoint.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IDFilter.html">IDFilter</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">used to filter identifications by different criteria <a href="classOpenMS_1_1IDFilter.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SignalToNoiseEstimator.html">SignalToNoiseEstimator</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">This class represents the abstract base class of a signal to noise estimator. <a href="classOpenMS_1_1SignalToNoiseEstimator.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SignalToNoiseEstimatorMeanIterative.html">SignalToNoiseEstimatorMeanIterative</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Estimates the signal/noise (S/N) ratio of each data point in a scan based on an iterative scheme which discards high intensities. <a href="classOpenMS_1_1SignalToNoiseEstimatorMeanIterative.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SignalToNoiseEstimatorMedian.html">SignalToNoiseEstimatorMedian</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Estimates the signal/noise (S/N) ratio of each data point in a scan by using the median (histogram based) <a href="classOpenMS_1_1SignalToNoiseEstimatorMedian.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1GaussFilter.html">GaussFilter</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">This class represents a Gaussian lowpass-filter which works on uniform as well as on non-uniform profile data. <a href="classOpenMS_1_1GaussFilter.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1GaussFilterAlgorithm.html">GaussFilterAlgorithm</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">This class represents a Gaussian lowpass-filter which works on uniform as well as on non-uniform profile data. <a href="classOpenMS_1_1GaussFilterAlgorithm.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LowessSmoothing.html">LowessSmoothing</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">LOWESS (locally weighted scatterplot smoothing). <a href="classOpenMS_1_1LowessSmoothing.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SavitzkyGolayFilter.html">SavitzkyGolayFilter</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Computes the Savitzky-Golay filter coefficients using QR decomposition. <a href="classOpenMS_1_1SavitzkyGolayFilter.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BernNorm.html">BernNorm</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1BernNorm.html" title="BernNorm scales the peaks by ranking them and then scaling them according to rank. ">BernNorm</a> scales the peaks by ranking them and then scaling them according to rank. <a href="classOpenMS_1_1BernNorm.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ComplementFilter.html">ComplementFilter</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">total intensity of peak pairs that could result from complementing fragments of charge state 1 <a href="classOpenMS_1_1ComplementFilter.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ComplementMarker.html">ComplementMarker</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1ComplementMarker.html" title="ComplementMarker marks peak pairs which could represent y - b ion pairs. ">ComplementMarker</a> marks peak pairs which could represent y - b ion pairs. <a href="classOpenMS_1_1ComplementMarker.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FilterFunctor.html">FilterFunctor</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A <a class="el" href="classOpenMS_1_1FilterFunctor.html" title="A FilterFunctor extracts some spectrum characteristics for quality assessment. ">FilterFunctor</a> extracts some spectrum characteristics for quality assessment. <a href="classOpenMS_1_1FilterFunctor.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1GoodDiffFilter.html">GoodDiffFilter</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1GoodDiffFilter.html" title="GoodDiffFilter counts the number ob peak pairs whose m/z difference can be explained by a amino acid ...">GoodDiffFilter</a> counts the number ob peak pairs whose m/z difference can be explained by a amino acid loss. <a href="classOpenMS_1_1GoodDiffFilter.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IntensityBalanceFilter.html">IntensityBalanceFilter</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1IntensityBalanceFilter.html" title="IntensityBalanceFilter divides the m/z-range into ten regions and sums the intensity in these regions...">IntensityBalanceFilter</a> divides the m/z-range into ten regions and sums the intensity in these regions. <a href="classOpenMS_1_1IntensityBalanceFilter.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IsotopeDiffFilter.html">IsotopeDiffFilter</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1IsotopeDiffFilter.html" title="IsotopeDiffFilter returns total intensity of peak pairs that could result from isotope peaks...">IsotopeDiffFilter</a> returns total intensity of peak pairs that could result from isotope peaks. <a href="classOpenMS_1_1IsotopeDiffFilter.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IsotopeMarker.html">IsotopeMarker</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1IsotopeMarker.html" title="IsotopeMarker marks peak pairs which could represent an ion and its isotope. ">IsotopeMarker</a> marks peak pairs which could represent an ion and its isotope. <a href="classOpenMS_1_1IsotopeMarker.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LinearResampler.html">LinearResampler</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Linear Resampling of raw data. <a href="classOpenMS_1_1LinearResampler.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LinearResamplerAlign.html">LinearResamplerAlign</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Linear Resampling of raw data with alignment. <a href="classOpenMS_1_1LinearResamplerAlign.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MarkerMower.html">MarkerMower</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1MarkerMower.html" title="MarkerMower uses PeakMarker to find peaks, those that are not marked get removed. ...">MarkerMower</a> uses <a class="el" href="classOpenMS_1_1PeakMarker.html" title="PeakMarker marks peaks that seem to fulfill some criterion. ">PeakMarker</a> to find peaks, those that are not marked get removed. <a href="classOpenMS_1_1MarkerMower.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1NeutralLossDiffFilter.html">NeutralLossDiffFilter</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1NeutralLossDiffFilter.html" title="NeutralLossDiffFilter returns the total intensity ob peak pairs whose m/z difference can be explained...">NeutralLossDiffFilter</a> returns the total intensity ob peak pairs whose m/z difference can be explained by a neutral loss. <a href="classOpenMS_1_1NeutralLossDiffFilter.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1NeutralLossMarker.html">NeutralLossMarker</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1NeutralLossMarker.html" title="NeutralLossMarker marks peak pairs which could represent an ion an its neutral loss (water...">NeutralLossMarker</a> marks peak pairs which could represent an ion an its neutral loss (water, ammonia) <a href="classOpenMS_1_1NeutralLossMarker.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1NLargest.html">NLargest</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1NLargest.html" title="NLargest removes all but the n largest peaks. ">NLargest</a> removes all but the n largest peaks. <a href="classOpenMS_1_1NLargest.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Normalizer.html">Normalizer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1Normalizer.html" title="Normalizer normalizes the peak intensities. ">Normalizer</a> normalizes the peak intensities. <a href="classOpenMS_1_1Normalizer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ParentPeakMower.html">ParentPeakMower</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1ParentPeakMower.html" title="ParentPeakMower gets rid of high peaks that could stem from unfragmented precursor ions...">ParentPeakMower</a> gets rid of high peaks that could stem from unfragmented precursor ions. <a href="classOpenMS_1_1ParentPeakMower.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeakMarker.html">PeakMarker</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1PeakMarker.html" title="PeakMarker marks peaks that seem to fulfill some criterion. ">PeakMarker</a> marks peaks that seem to fulfill some criterion. <a href="classOpenMS_1_1PeakMarker.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Scaler.html">Scaler</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1Scaler.html" title="Scaler scales the peak by ranking the peaks and assigning intensity according to rank. ">Scaler</a> scales the peak by ranking the peaks and assigning intensity according to rank. <a href="classOpenMS_1_1Scaler.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectraMerger.html">SpectraMerger</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Merges blocks of MS or MS2 spectra. <a href="classOpenMS_1_1SpectraMerger.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SqrtMower.html">SqrtMower</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Scales the intensity of peaks to the sqrt. <a href="classOpenMS_1_1SqrtMower.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ThresholdMower.html">ThresholdMower</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1ThresholdMower.html" title="ThresholdMower removes all peaks below a threshold. ">ThresholdMower</a> removes all peaks below a threshold. <a href="classOpenMS_1_1ThresholdMower.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TICFilter.html">TICFilter</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1TICFilter.html" title="TICFilter calculates TIC. ">TICFilter</a> calculates TIC. <a href="classOpenMS_1_1TICFilter.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1WindowMower.html">WindowMower</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1WindowMower.html" title="WindowMower augments the highest peaks in a sliding or jumping window. ">WindowMower</a> augments the highest peaks in a sliding or jumping window. <a href="classOpenMS_1_1WindowMower.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Base64.html">Base64</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class to encode and decode <a class="el" href="classOpenMS_1_1Base64.html" title="Class to encode and decode Base64. ">Base64</a>. <a href="classOpenMS_1_1Base64.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Bzip2Ifstream.html">Bzip2Ifstream</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Decompresses files which are compressed in the bzip2 format (*.bz2) <a href="classOpenMS_1_1Bzip2Ifstream.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Bzip2InputStream.html">Bzip2InputStream</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Implements the BinInputStream class of the xerces-c library in order to read bzip2 compressed XML files. <a href="classOpenMS_1_1Bzip2InputStream.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1CompressedInputSource.html">CompressedInputSource</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">This class is based on xercesc::LocalFileInputSource. <a href="classOpenMS_1_1CompressedInputSource.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConsensusXMLFile.html">ConsensusXMLFile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">This class provides Input functionality for ConsensusMaps and Output functionality for alignments and quantitation. <a href="classOpenMS_1_1ConsensusXMLFile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ControlledVocabulary.html">ControlledVocabulary</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Representation of a controlled vocabulary. <a href="classOpenMS_1_1ControlledVocabulary.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1CsvFile.html">CsvFile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">This class handles csv files. Currently only loading is implemented. <a href="classOpenMS_1_1CsvFile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1CVMappingFile.html">CVMappingFile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Used to load CvMapping files. <a href="classOpenMS_1_1CVMappingFile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DBAdapter.html">DBAdapter</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A class for accessing and storing data in a SQL database. <a href="classOpenMS_1_1DBAdapter.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DBConnection.html">DBConnection</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A class for connecting to a SQL database. <a href="classOpenMS_1_1DBConnection.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PersistentObject.html">PersistentObject</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Base class for all persistent objects. <a href="classOpenMS_1_1PersistentObject.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DTA2DFile.html">DTA2DFile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">DTA2D <a class="el" href="classOpenMS_1_1File.html" title="Basic file handling operations. ">File</a> adapter. <a href="classOpenMS_1_1DTA2DFile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DTAFile.html">DTAFile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1File.html" title="Basic file handling operations. ">File</a> adapter for DTA files. <a href="classOpenMS_1_1DTAFile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EDTAFile.html">EDTAFile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1File.html" title="Basic file handling operations. ">File</a> adapter for Enhanced DTA files. <a href="classOpenMS_1_1EDTAFile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FASTAFile.html">FASTAFile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">This class serves for reading in FASTA files. <a href="classOpenMS_1_1FASTAFile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FastaIterator.html">FastaIterator</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Iterator over FASTA file. <a href="classOpenMS_1_1FastaIterator.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FastaIteratorIntern.html">FastaIteratorIntern</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Iterator for a FASTA file. <a href="classOpenMS_1_1FastaIteratorIntern.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureXMLFile.html">FeatureXMLFile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">This class provides Input/Output functionality for feature maps. <a href="classOpenMS_1_1FeatureXMLFile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FileHandler.html">FileHandler</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Facilitates file handling by file type recognition. <a href="classOpenMS_1_1FileHandler.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1FileTypes.html">FileTypes</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Centralizes the file types recognized by <a class="el" href="classOpenMS_1_1FileHandler.html" title="Facilitates file handling by file type recognition. ">FileHandler</a>. <a href="structOpenMS_1_1FileTypes.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1GzipIfstream.html">GzipIfstream</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Decompresses files which are compressed in the gzip format (*.gzip) <a href="classOpenMS_1_1GzipIfstream.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1GzipInputStream.html">GzipInputStream</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Implements the BinInputStream class of the xerces-c library in order to read gzip compressed XML files. <a href="classOpenMS_1_1GzipInputStream.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IdXMLFile.html">IdXMLFile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Used to load and store idXML files. <a href="classOpenMS_1_1IdXMLFile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1InspectInfile.html">InspectInfile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Inspect input file adapter. <a href="classOpenMS_1_1InspectInfile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1InspectOutfile.html">InspectOutfile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Representation of an Inspect outfile. <a href="classOpenMS_1_1InspectOutfile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1KroenikFile.html">KroenikFile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1File.html" title="Basic file handling operations. ">File</a> adapter for Kroenik (HardKloer sibling) files. <a href="classOpenMS_1_1KroenikFile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LibSVMEncoder.html">LibSVMEncoder</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Serves for encoding sequences into feature vectors. <a href="classOpenMS_1_1LibSVMEncoder.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MascotGenericFile.html">MascotGenericFile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Mascot input file adapter. <a href="classOpenMS_1_1MascotGenericFile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MascotInfile.html">MascotInfile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Mascot input file adapter. <a href="classOpenMS_1_1MascotInfile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MascotRemoteQuery.html">MascotRemoteQuery</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class which handles the communication between <a class="el" href="namespaceOpenMS.html" title="Main OpenMS namespace. ">OpenMS</a> and the Mascot server. <a href="classOpenMS_1_1MascotRemoteQuery.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MascotXMLFile.html">MascotXMLFile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Used to load MascotXML files. <a href="classOpenMS_1_1MascotXMLFile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MS2File.html">MS2File</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">MS2 input file adapter. <a href="classOpenMS_1_1MS2File.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MsInspectFile.html">MsInspectFile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1File.html" title="Basic file handling operations. ">File</a> adapter for MsInspect files. <a href="classOpenMS_1_1MsInspectFile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MSPFile.html">MSPFile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1File.html" title="Basic file handling operations. ">File</a> adapter for MSP files (NIST spectra library) <a href="classOpenMS_1_1MSPFile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MzDataFile.html">MzDataFile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1File.html" title="Basic file handling operations. ">File</a> adapter for MzData files. <a href="classOpenMS_1_1MzDataFile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MzIdentMLFile.html">MzIdentMLFile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1File.html" title="Basic file handling operations. ">File</a> adapter for MzIdentML files. <a href="classOpenMS_1_1MzIdentMLFile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MzMLFile.html">MzMLFile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1File.html" title="Basic file handling operations. ">File</a> adapter for MzML files. <a href="classOpenMS_1_1MzMLFile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MzQuantMLFile.html">MzQuantMLFile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1File.html" title="Basic file handling operations. ">File</a> adapter for MzQuantML files. <a href="classOpenMS_1_1MzQuantMLFile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MzTabNullAbleInterface.html">MzTabNullAbleInterface</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MzTabNullNaNAndInfAbleInterface.html">MzTabNullNaNAndInfAbleInterface</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MzTabNullAbleBase.html">MzTabNullAbleBase</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MzTabNullNaNAndInfAbleBase.html">MzTabNullNaNAndInfAbleBase</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MzTabDouble.html">MzTabDouble</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MzTabDoubleList.html">MzTabDoubleList</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MzTabInteger.html">MzTabInteger</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MzTabBoolean.html">MzTabBoolean</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MzTabString.html">MzTabString</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MzTabParameter.html">MzTabParameter</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MzTabParameterList.html">MzTabParameterList</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MzTabStringList.html">MzTabStringList</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1MzTabModification.html">MzTabModification</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MzTabModificationList.html">MzTabModificationList</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MzTabSpectraRef.html">MzTabSpectraRef</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1MzTabSubIdMetaData.html">MzTabSubIdMetaData</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1MzTabUnitIdMetaData.html">MzTabUnitIdMetaData</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1MzTabProteinSectionRow.html">MzTabProteinSectionRow</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1MzTabPeptideSectionRow.html">MzTabPeptideSectionRow</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1MzTabSmallMoleculeSectionRow.html">MzTabSmallMoleculeSectionRow</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MzTab.html">MzTab</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Data model of <a class="el" href="classOpenMS_1_1MzTab.html" title="Data model of MzTab files. Please see the official MzTab specification at https://code.google.com/p/mztab/. ">MzTab</a> files. Please see the official <a class="el" href="classOpenMS_1_1MzTab.html" title="Data model of MzTab files. Please see the official MzTab specification at https://code.google.com/p/mztab/. ">MzTab</a> specification at <a href="https://code.google.com/p/mztab/">https://code.google.com/p/mztab/</a>. <a href="classOpenMS_1_1MzTab.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MzTabFile.html">MzTabFile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1File.html" title="Basic file handling operations. ">File</a> adapter for <a class="el" href="classOpenMS_1_1MzTab.html" title="Data model of MzTab files. Please see the official MzTab specification at https://code.google.com/p/mztab/. ">MzTab</a> files. <a href="classOpenMS_1_1MzTabFile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MzXMLFile.html">MzXMLFile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1File.html" title="Basic file handling operations. ">File</a> adapter for MzXML 2.1 files. <a href="classOpenMS_1_1MzXMLFile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1OMSSACSVFile.html">OMSSACSVFile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1File.html" title="Basic file handling operations. ">File</a> adapter for OMSSACSV files. <a href="classOpenMS_1_1OMSSACSVFile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1OMSSAXMLFile.html">OMSSAXMLFile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Used to load OMSSAXML files. <a href="classOpenMS_1_1OMSSAXMLFile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureFileOptions.html">FeatureFileOptions</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Options for loading files containing features. <a href="classOpenMS_1_1FeatureFileOptions.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeakFileOptions.html">PeakFileOptions</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Options for loading files containing peak data. <a href="classOpenMS_1_1PeakFileOptions.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ParamXMLFile.html">ParamXMLFile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">The file pendant of the <a class="el" href="classOpenMS_1_1Param.html" title="Management and storage of parameters / INI files. ">Param</a> class used to load and store the param datastructure as paramXML. <a href="classOpenMS_1_1ParamXMLFile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeakTypeEstimator.html">PeakTypeEstimator</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Estimates if the data of a spectrum is raw data or peak data. <a href="classOpenMS_1_1PeakTypeEstimator.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PepNovoInfile.html">PepNovoInfile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">PepNovo input file adapter. <a href="classOpenMS_1_1PepNovoInfile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PepNovoOutfile.html">PepNovoOutfile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Representation of a PepNovo output file. <a href="classOpenMS_1_1PepNovoOutfile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PepXMLFile.html">PepXMLFile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Used to load and store PepXML files. <a href="classOpenMS_1_1PepXMLFile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PepXMLFileMascot.html">PepXMLFileMascot</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Used to load Mascot PepXML files. <a href="classOpenMS_1_1PepXMLFileMascot.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProtXMLFile.html">ProtXMLFile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Used to load (storing not supported, yet) ProtXML files. <a href="classOpenMS_1_1ProtXMLFile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PTMXMLFile.html">PTMXMLFile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Used to load and store PTMXML files. <a href="classOpenMS_1_1PTMXMLFile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1QcMLFile.html">QcMLFile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1File.html" title="Basic file handling operations. ">File</a> adapter for QcML files. <a href="classOpenMS_1_1QcMLFile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SequestInfile.html">SequestInfile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Sequest input file adapter. <a href="classOpenMS_1_1SequestInfile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SequestOutfile.html">SequestOutfile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Representation of a Sequest output file. <a href="classOpenMS_1_1SequestOutfile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpecArrayFile.html">SpecArrayFile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1File.html" title="Basic file handling operations. ">File</a> adapter for SpecArray (.pepList) files. <a href="classOpenMS_1_1SpecArrayFile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SVOutStream.html">SVOutStream</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Stream class for writing to comma/tab/...-separated values files. <a href="classOpenMS_1_1SVOutStream.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TextFile.html">TextFile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">This class provides some basic file handling methods for text files. <a href="classOpenMS_1_1TextFile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ToolDescriptionFile.html">ToolDescriptionFile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1File.html" title="Basic file handling operations. ">File</a> adapter for ToolDescriptor files. <a href="classOpenMS_1_1ToolDescriptionFile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TraMLFile.html">TraMLFile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1File.html" title="Basic file handling operations. ">File</a> adapter for HUPO PSI TraML files. <a href="classOpenMS_1_1TraMLFile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TransformationXMLFile.html">TransformationXMLFile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Used to load and store TransformationXML files. <a href="classOpenMS_1_1TransformationXMLFile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1UnimodXMLFile.html">UnimodXMLFile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Used to load XML files from unimod.org files. <a href="classOpenMS_1_1UnimodXMLFile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1XMLValidator.html">XMLValidator</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Validator for XML files. <a href="classOpenMS_1_1XMLValidator.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1XMassFile.html">XMassFile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1File.html" title="Basic file handling operations. ">File</a> adapter for 'XMass Analysis (fid)' files. <a href="classOpenMS_1_1XMassFile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1XTandemInfile.html">XTandemInfile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">XTandem input file. <a href="classOpenMS_1_1XTandemInfile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1XTandemXMLFile.html">XTandemXMLFile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Used to load XTandemXML files. <a href="classOpenMS_1_1XTandemXMLFile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BaseFeature.html">BaseFeature</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A basic LC-MS feature. <a href="classOpenMS_1_1BaseFeature.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ChromatogramPeak.html">ChromatogramPeak</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A 1-dimensional raw data point or peak for chromatograms. <a href="classOpenMS_1_1ChromatogramPeak.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ChromatogramTools.html">ChromatogramTools</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Conversion class to interconvert chromatograms. <a href="classOpenMS_1_1ChromatogramTools.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1PointerComparator.html">PointerComparator</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Wrapper that takes a comparator for `something' and makes a comparator for <em>pointers</em> to `something' out of it. Normally you should use the make-function <a class="el" href="structOpenMS_1_1PointerComparator.html#aeb071107569224c672893cd945dff7fe" title="Make-function to create a PointerComparator from another comparator without the need to specify the t...">pointerComparator()</a> because then you do not need to specify the template arguments. <a href="structOpenMS_1_1PointerComparator.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1ReverseComparator.html">ReverseComparator</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Wrapper that reverses (exchanges) the two arguments of a comparator. Normally you should use the make-function <a class="el" href="structOpenMS_1_1ReverseComparator.html#a74e80d32be63268d8a46039297e18cc6" title="Make-function to create a ReverseComparator from another comparator without the need to specify the t...">reverseComparator()</a> because then you do not need to specify the template arguments. <a href="structOpenMS_1_1ReverseComparator.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1LexicographicComparator.html">LexicographicComparator</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A wrapper class that combines two comparators lexicographically. Normally you should use the make-function <a class="el" href="structOpenMS_1_1LexicographicComparator.html#ac4e734db514973176bfe65e0fa9905ae" title="Make-function to create a LexicographicComparator from two other comparators without the need to spec...">lexicographicComparator()</a> because then you do not need to specify the template arguments. <a href="structOpenMS_1_1LexicographicComparator.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1PairComparatorFirstElement.html">PairComparatorFirstElement</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class for comparison of std::pair using first ONLY e.g. for use with std::sort. <a href="structOpenMS_1_1PairComparatorFirstElement.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1PairComparatorSecondElement.html">PairComparatorSecondElement</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class for comparison of std::pair using second ONLY e.g. for use with std::sort. <a href="structOpenMS_1_1PairComparatorSecondElement.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1PairComparatorFirstElementMore.html">PairComparatorFirstElementMore</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class for comparison of std::pair using first ONLY e.g. for use with std::sort. <a href="structOpenMS_1_1PairComparatorFirstElementMore.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1PairComparatorSecondElementMore.html">PairComparatorSecondElementMore</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class for comparison of std::pair using second ONLY e.g. for use with std::sort. <a href="structOpenMS_1_1PairComparatorSecondElementMore.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1PairMatcherFirstElement.html">PairMatcherFirstElement</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class for comparison of std::pair using first ONLY e.g. for use with std::sort. <a href="structOpenMS_1_1PairMatcherFirstElement.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1PairMatcherSecondElement.html">PairMatcherSecondElement</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Struct for comparison of std::pair using second ONLY e.g. for use with std::sort. <a href="structOpenMS_1_1PairMatcherSecondElement.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1EqualInTolerance.html">EqualInTolerance</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Struct for binary predicate to consider equality with a certain tolerance. <a href="structOpenMS_1_1EqualInTolerance.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConsensusFeature.html">ConsensusFeature</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A 2-dimensional consensus feature. <a href="classOpenMS_1_1ConsensusFeature.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A container for consensus elements. <a href="classOpenMS_1_1ConsensusMap.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1DPeak.html">DPeak</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Metafunction to choose among <a class="el" href="classOpenMS_1_1Peak1D.html" title="A 1-dimensional raw data point or peak. ">Peak1D</a> respectively <a class="el" href="classOpenMS_1_1Peak2D.html" title="A 2-dimensional raw data point or peak. ">Peak2D</a> through a template argument. <a href="structOpenMS_1_1DPeak.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1DRichPeak.html">DRichPeak</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Metafunction to choose among <a class="el" href="classOpenMS_1_1RichPeak1D.html" title="A 1-dimensional raw data point or peak mith meta information. ">RichPeak1D</a> respectively <a class="el" href="classOpenMS_1_1RichPeak2D.html" title="A 2-dimensional raw data point or peak with meta information. ">RichPeak2D</a> through a template argument. <a href="structOpenMS_1_1DRichPeak.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Feature.html">Feature</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">An LC-MS feature. <a href="classOpenMS_1_1Feature.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureHandle.html">FeatureHandle</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Representation of a <a class="el" href="classOpenMS_1_1Peak2D.html" title="A 2-dimensional raw data point or peak. ">Peak2D</a>, <a class="el" href="classOpenMS_1_1RichPeak2D.html" title="A 2-dimensional raw data point or peak with meta information. ">RichPeak2D</a> or <a class="el" href="classOpenMS_1_1Feature.html" title="An LC-MS feature. ">Feature</a> . <a href="classOpenMS_1_1FeatureHandle.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1AnnotationStatistics.html">AnnotationStatistics</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureMap.html">FeatureMap</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A container for features. <a href="classOpenMS_1_1FeatureMap.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MassTrace.html">MassTrace</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A container type that gathers peaks similar in m/z and moving along retention time. <a href="classOpenMS_1_1MassTrace.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MRMFeature.html">MRMFeature</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A multi-chromatogram MRM feature. <a href="classOpenMS_1_1MRMFeature.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MRMTransitionGroup.html">MRMTransitionGroup</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">The representation of a transition group that has information about the individual chromatograms as well as the transitions it refers to. <a href="classOpenMS_1_1MRMTransitionGroup.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MSChromatogram.html">MSChromatogram</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">The representation of a chromatogram. <a href="classOpenMS_1_1MSChromatogram.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MSExperiment.html">MSExperiment</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Representation of a mass spectrometry experiment. <a href="classOpenMS_1_1MSExperiment.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MSSpectrum.html">MSSpectrum</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">The representation of a 1D spectrum. <a href="classOpenMS_1_1MSSpectrum.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Peak1D.html">Peak1D</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A 1-dimensional raw data point or peak. <a href="classOpenMS_1_1Peak1D.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Peak2D.html">Peak2D</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A 2-dimensional raw data point or peak. <a href="classOpenMS_1_1Peak2D.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1PeakIndex.html">PeakIndex</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Index of a peak or feature. <a href="structOpenMS_1_1PeakIndex.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1RangeManager.html">RangeManager</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Handles the managment of a position and intensity range. <a href="classOpenMS_1_1RangeManager.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1HasMetaValue.html">HasMetaValue</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Predicate that determines if a class has a certain metavalue. <a href="classOpenMS_1_1HasMetaValue.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1InRTRange.html">InRTRange</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Predicate that determines if a spectrum lies inside/outside a specific retention time range. <a href="classOpenMS_1_1InRTRange.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1InMSLevelRange.html">InMSLevelRange</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Predicate that determines if a spectrum lies inside/outside a specific MS level set. <a href="classOpenMS_1_1InMSLevelRange.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1HasScanMode.html">HasScanMode</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Predicate that determines if a spectrum has a certain scan mode. <a href="classOpenMS_1_1HasScanMode.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IsEmptySpectrum.html">IsEmptySpectrum</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Predicate that determines if a spectrum is empty. <a href="classOpenMS_1_1IsEmptySpectrum.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IsZoomSpectrum.html">IsZoomSpectrum</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Predicate that determines if a spectrum is a zoom (enhanced resolution) spectrum. <a href="classOpenMS_1_1IsZoomSpectrum.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1HasActivationMethod.html">HasActivationMethod</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Predicate that determines if a spectrum was generated using any activation method given in the constructor list. <a href="classOpenMS_1_1HasActivationMethod.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1InPrecursorMZRange.html">InPrecursorMZRange</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Predicate that determines if a spectrum's precursor is within a certain m/z range. <a href="classOpenMS_1_1InPrecursorMZRange.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1HasPrecursorCharge.html">HasPrecursorCharge</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Predicate that determines if a spectrum has a certain precursor charge as given in the constructor list. <a href="classOpenMS_1_1HasPrecursorCharge.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1InMzRange.html">InMzRange</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Predicate that determines if a peak lies inside/outside a specific m/z range. <a href="classOpenMS_1_1InMzRange.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1InIntensityRange.html">InIntensityRange</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Predicate that determines if a peak lies inside/outside a specific intensity range. <a href="classOpenMS_1_1InIntensityRange.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IsInCollisionEnergyRange.html">IsInCollisionEnergyRange</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Predicate that determines if an MSn spectrum was generated with a collision energy in the given range. <a href="classOpenMS_1_1IsInCollisionEnergyRange.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IsInIsolationWindowSizeRange.html">IsInIsolationWindowSizeRange</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Predicate that determines if the width of the isolation window of an MSn spectrum is in the given range. <a href="classOpenMS_1_1IsInIsolationWindowSizeRange.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1RichPeak1D.html">RichPeak1D</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A 1-dimensional raw data point or peak mith meta information. <a href="classOpenMS_1_1RichPeak1D.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1RichPeak2D.html">RichPeak2D</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A 2-dimensional raw data point or peak with meta information. <a href="classOpenMS_1_1RichPeak2D.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1NonNegativeLeastSquaresSolver.html">NonNegativeLeastSquaresSolver</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Wrapper for a non-negative least squares (<a class="el" href="namespaceOpenMS_1_1NNLS.html">NNLS</a>) solver. <a href="classOpenMS_1_1NonNegativeLeastSquaresSolver.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Acquisition.html">Acquisition</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Information about one raw data spectrum that was combined with several other raw data spectra. <a href="classOpenMS_1_1Acquisition.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AcquisitionInfo.html">AcquisitionInfo</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Description of the combination of raw data to a single spectrum. <a href="classOpenMS_1_1AcquisitionInfo.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ChromatogramSettings.html">ChromatogramSettings</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Representation of chromatogram settings, e.g. SRM/MRM chromatograms. <a href="classOpenMS_1_1ChromatogramSettings.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ContactPerson.html">ContactPerson</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Contact person information. <a href="classOpenMS_1_1ContactPerson.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1CVTerm.html">CVTerm</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Representation of controlled vocabulary term. <a href="classOpenMS_1_1CVTerm.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1CVTermList.html">CVTermList</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Representation of controlled vocabulary term list. <a href="classOpenMS_1_1CVTermList.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DataProcessing.html">DataProcessing</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Descripton of the applied preprocessing steps. <a href="classOpenMS_1_1DataProcessing.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Digestion.html">Digestion</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Meta information about digestion of a sample. <a href="classOpenMS_1_1Digestion.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DocumentIdentifier.html">DocumentIdentifier</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Manage source document information. <a href="classOpenMS_1_1DocumentIdentifier.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DocumentIDTagger.html">DocumentIDTagger</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Tags <a class="el" href="namespaceOpenMS.html" title="Main OpenMS namespace. ">OpenMS</a> file containers with a DocumentID. <a href="classOpenMS_1_1DocumentIDTagger.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ExperimentalSettings.html">ExperimentalSettings</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Description of the experimental settings. <a href="classOpenMS_1_1ExperimentalSettings.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Gradient.html">Gradient</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Representation of a <a class="el" href="classOpenMS_1_1HPLC.html" title="Representation of a HPLC experiment. ">HPLC</a> gradient. <a href="classOpenMS_1_1Gradient.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1HPLC.html">HPLC</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Representation of a <a class="el" href="classOpenMS_1_1HPLC.html" title="Representation of a HPLC experiment. ">HPLC</a> experiment. <a href="classOpenMS_1_1HPLC.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Identification.html">Identification</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Represents a object which can store the information of an analysisXML instance. <a href="classOpenMS_1_1Identification.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IdentificationHit.html">IdentificationHit</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Represents a object which can store the information of an analysisXML instance. <a href="classOpenMS_1_1IdentificationHit.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Instrument.html">Instrument</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Description of a MS instrument. <a href="classOpenMS_1_1Instrument.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1InstrumentSettings.html">InstrumentSettings</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Description of the settings a MS <a class="el" href="classOpenMS_1_1Instrument.html" title="Description of a MS instrument. ">Instrument</a> was run with. <a href="classOpenMS_1_1InstrumentSettings.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IonDetector.html">IonDetector</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Description of a ion detector (part of a MS <a class="el" href="classOpenMS_1_1Instrument.html" title="Description of a MS instrument. ">Instrument</a>) <a href="classOpenMS_1_1IonDetector.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IonSource.html">IonSource</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Description of a ion source (part of a MS <a class="el" href="classOpenMS_1_1Instrument.html" title="Description of a MS instrument. ">Instrument</a>) <a href="classOpenMS_1_1IonSource.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MassAnalyzer.html">MassAnalyzer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Descripton of a mass analyzer (part of a MS <a class="el" href="classOpenMS_1_1Instrument.html" title="Description of a MS instrument. ">Instrument</a>) <a href="classOpenMS_1_1MassAnalyzer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfo.html">MetaInfo</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A Type-Name-Value tuple class. <a href="classOpenMS_1_1MetaInfo.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoDescription.html">MetaInfoDescription</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Description of the meta data arrays of <a class="el" href="classOpenMS_1_1MSSpectrum.html" title="The representation of a 1D spectrum. ">MSSpectrum</a>. <a href="classOpenMS_1_1MetaInfoDescription.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoInterface.html">MetaInfoInterface</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Interface for classes that can store arbitrary meta information (Type-Name-Value tuples). <a href="classOpenMS_1_1MetaInfoInterface.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoRegistry.html">MetaInfoRegistry</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Registry which assigns unique integer indices to strings. <a href="classOpenMS_1_1MetaInfoRegistry.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Modification.html">Modification</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Meta information about chemical modification of a sample. <a href="classOpenMS_1_1Modification.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MSQuantifications.html">MSQuantifications</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeptideEvidence.html">PeptideEvidence</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Representation of a MzIdentML <a class="el" href="classOpenMS_1_1PeptideEvidence.html" title="Representation of a MzIdentML PeptideEvidence. ">PeptideEvidence</a>. <a href="classOpenMS_1_1PeptideEvidence.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeptideHit.html">PeptideHit</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Representation of a peptide hit. <a href="classOpenMS_1_1PeptideHit.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeptideIdentification.html">PeptideIdentification</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Represents the peptide hits for a spectrum. <a href="classOpenMS_1_1PeptideIdentification.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Precursor.html">Precursor</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1Precursor.html" title="Precursor meta information. ">Precursor</a> meta information. <a href="classOpenMS_1_1Precursor.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Product.html">Product</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1Product.html" title="Product meta information. ">Product</a> meta information. <a href="classOpenMS_1_1Product.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProteinHit.html">ProteinHit</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Representation of a protein hit. <a href="classOpenMS_1_1ProteinHit.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProteinIdentification.html">ProteinIdentification</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Representation of a protein identification run. <a href="classOpenMS_1_1ProteinIdentification.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Sample.html">Sample</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Meta information about the sample. <a href="classOpenMS_1_1Sample.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SampleTreatment.html">SampleTreatment</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Base class for sample treatments (<a class="el" href="classOpenMS_1_1Digestion.html" title="Meta information about digestion of a sample. ">Digestion</a>, <a class="el" href="classOpenMS_1_1Modification.html" title="Meta information about chemical modification of a sample. ">Modification</a>, <a class="el" href="classOpenMS_1_1Tagging.html" title="Meta information about tagging of a sample e.g. ICAT labeling. ">Tagging</a>, ...) <a href="classOpenMS_1_1SampleTreatment.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1ScanWindow.html">ScanWindow</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Scan window description. <a href="structOpenMS_1_1ScanWindow.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Software.html">Software</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Description of the software used for processing. <a href="classOpenMS_1_1Software.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SourceFile.html">SourceFile</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Description of a file location, used to store the origin of (meta) data. <a href="classOpenMS_1_1SourceFile.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumIdentification.html">SpectrumIdentification</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Represents a object which can store the information of an analysisXML instance. <a href="classOpenMS_1_1SpectrumIdentification.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumSettings.html">SpectrumSettings</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Representation of 1D spectrum settings. <a href="classOpenMS_1_1SpectrumSettings.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Tagging.html">Tagging</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Meta information about tagging of a sample e.g. ICAT labeling. <a href="classOpenMS_1_1Tagging.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DetectabilitySimulation.html">DetectabilitySimulation</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Simulates peptide detectability. <a href="classOpenMS_1_1DetectabilitySimulation.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DigestSimulation.html">DigestSimulation</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Simulates protein digestion. <a href="classOpenMS_1_1DigestSimulation.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EGHFitter1D.html">EGHFitter1D</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Exponential-Gaussian hybrid distribution fitter (1-dim.) using Levenberg-Marquardt algorithm (GSL implementation) for parameter optimization. <a href="classOpenMS_1_1EGHFitter1D.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EGHModel.html">EGHModel</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Exponential-Gaussian hybrid distribution model for elution profiles. <a href="classOpenMS_1_1EGHModel.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IonizationSimulation.html">IonizationSimulation</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Simulates Protein ionization. <a href="classOpenMS_1_1IonizationSimulation.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BaseLabeler.html">BaseLabeler</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Abstract base class for all kinds of labeling techniques. <a href="classOpenMS_1_1BaseLabeler.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ICPLLabeler.html">ICPLLabeler</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Simulate ICPL experiments. <a href="classOpenMS_1_1ICPLLabeler.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ITRAQLabeler.html">ITRAQLabeler</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Simulate iTRAQ experiments. <a href="classOpenMS_1_1ITRAQLabeler.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LabelFreeLabeler.html">LabelFreeLabeler</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Abstract base class for all kinds of labeling techniques. <a href="classOpenMS_1_1LabelFreeLabeler.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1O18Labeler.html">O18Labeler</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Simulate O-18 experiments. <a href="classOpenMS_1_1O18Labeler.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SILACLabeler.html">SILACLabeler</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Simulate SILAC experiments. <a href="classOpenMS_1_1SILACLabeler.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MSSim.html">MSSim</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Central class for simulation of mass spectrometry experiments. <a href="classOpenMS_1_1MSSim.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1RawMSSignalSimulation.html">RawMSSignalSimulation</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Simulates MS signals for a given set of peptides. <a href="classOpenMS_1_1RawMSSignalSimulation.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1RawTandemMSSignalSimulation.html">RawTandemMSSignalSimulation</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Simulates tandem MS signales for a given set of peptides. <a href="classOpenMS_1_1RawTandemMSSignalSimulation.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1RTSimulation.html">RTSimulation</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Simulates/Predicts retention times for peptides or peptide separation. <a href="classOpenMS_1_1RTSimulation.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SampleProteins.html">SampleProteins</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Container for FASTAEntry & abundance information. <a href="classOpenMS_1_1SampleProteins.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SampleChannels.html">SampleChannels</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Container for multiple channels of <a class="el" href="classOpenMS_1_1SampleProteins.html" title="Container for FASTAEntry & abundance information. ">SampleProteins</a>. <a href="classOpenMS_1_1SampleChannels.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1SimRandomNumberGenerator.html">SimRandomNumberGenerator</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Wrapper class for random number generators used by the simulation classes. <a href="structOpenMS_1_1SimRandomNumberGenerator.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1File.html">File</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Basic file handling operations. <a href="classOpenMS_1_1File.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FileWatcher.html">FileWatcher</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Watcher that monitors file changes. <a href="classOpenMS_1_1FileWatcher.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1StopWatch.html">StopWatch</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1StopWatch.html" title="StopWatch Class. ">StopWatch</a> Class. <a href="classOpenMS_1_1StopWatch.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BaseModel.html">BaseModel</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Abstract base class for all D-dimensional models. <a href="classOpenMS_1_1BaseModel.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BiGaussFitter1D.html">BiGaussFitter1D</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Bigaussian distribution fitter (1-dim.) approximated using linear interpolation. <a href="classOpenMS_1_1BiGaussFitter1D.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BiGaussModel.html">BiGaussModel</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Bigaussian distribution approximated using linear interpolation. <a href="classOpenMS_1_1BiGaussModel.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EGHTraceFitter.html">EGHTraceFitter</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A RT Profile fitter using an Exponential Gaussian Hybrid background model. <a href="classOpenMS_1_1EGHTraceFitter.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EmgFitter1D.html">EmgFitter1D</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Exponentially modified gaussian distribution fitter (1-dim.) using Levenberg-Marquardt algorithm (GSL implementation) for parameter optimization. <a href="classOpenMS_1_1EmgFitter1D.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EmgModel.html">EmgModel</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Exponentially modified gaussian distribution model for elution profiles. <a href="classOpenMS_1_1EmgModel.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EmgScoring.html">EmgScoring</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Scoring of an elution peak using an exponentially modified gaussian distribution model. <a href="classOpenMS_1_1EmgScoring.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ExtendedIsotopeFitter1D.html">ExtendedIsotopeFitter1D</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Extended isotope distribution fitter (1-dim.) approximated using linear interpolation. <a href="classOpenMS_1_1ExtendedIsotopeFitter1D.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ExtendedIsotopeModel.html">ExtendedIsotopeModel</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Extended isotope distribution approximated using linear interpolation. <a href="classOpenMS_1_1ExtendedIsotopeModel.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeaFiModule.html">FeaFiModule</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Implements a module of the <a class="el" href="classOpenMS_1_1FeatureFinder.html" title="The main feature finder class. ">FeatureFinder</a> algorithm. <a href="classOpenMS_1_1FeaFiModule.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureFinder.html">FeatureFinder</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">The main feature finder class. <a href="classOpenMS_1_1FeatureFinder.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1Summary.html">Summary</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structOpenMS_1_1Summary.html" title="Summary of fitting results. ">Summary</a> of fitting results. <a href="structOpenMS_1_1Summary.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html">FeatureFinderAlgorithm</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Abstract base class for <a class="el" href="classOpenMS_1_1FeatureFinder.html" title="The main feature finder class. ">FeatureFinder</a> algorithms. <a href="classOpenMS_1_1FeatureFinderAlgorithm.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmIsotopeWavelet.html">FeatureFinderAlgorithmIsotopeWavelet</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Implements the isotope wavelet feature finder. <a href="classOpenMS_1_1FeatureFinderAlgorithmIsotopeWavelet.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmMRM.html">FeatureFinderAlgorithmMRM</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html" title="Abstract base class for FeatureFinder algorithms. ">FeatureFinderAlgorithm</a> for MRM experiments. <a href="classOpenMS_1_1FeatureFinderAlgorithmMRM.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html">FeatureFinderAlgorithmPicked</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html" title="Abstract base class for FeatureFinder algorithms. ">FeatureFinderAlgorithm</a> for picked peaks. <a href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1FeatureFinderAlgorithmPickedHelperStructs.html">FeatureFinderAlgorithmPickedHelperStructs</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Wrapper struct for all the classes needed by the <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html" title="FeatureFinderAlgorithm for picked peaks. ">FeatureFinderAlgorithmPicked</a> and the associated classes. <a href="structOpenMS_1_1FeatureFinderAlgorithmPickedHelperStructs.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSH.html">FeatureFinderAlgorithmSH</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">The Superhirn <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html" title="Abstract base class for FeatureFinder algorithms. ">FeatureFinderAlgorithm</a>. <a href="classOpenMS_1_1FeatureFinderAlgorithmSH.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSHCtrl.html">FeatureFinderAlgorithmSHCtrl</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimple.html">FeatureFinderAlgorithmSimple</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html" title="Abstract base class for FeatureFinder algorithms. ">FeatureFinderAlgorithm</a> implementation using the Simple* modules. <a href="classOpenMS_1_1FeatureFinderAlgorithmSimple.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSimplest.html">FeatureFinderAlgorithmSimplest</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1FeatureFinderAlgorithm.html" title="Abstract base class for FeatureFinder algorithms. ">FeatureFinderAlgorithm</a> implementation using the Simple* modules. <a href="classOpenMS_1_1FeatureFinderAlgorithmSimplest.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1FeatureFinderDefs.html">FeatureFinderDefs</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">The purpose of this struct is to provide definitions of classes and typedefs which are used throughout all <a class="el" href="classOpenMS_1_1FeatureFinder.html" title="The main feature finder class. ">FeatureFinder</a> classes. <a href="structOpenMS_1_1FeatureFinderDefs.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Fitter1D.html">Fitter1D</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Abstract base class for all 1D-dimensional model fitter. <a href="classOpenMS_1_1Fitter1D.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1GaussFitter1D.html">GaussFitter1D</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Gaussian distribution fitter (1-dim.) approximated using linear interpolation. <a href="classOpenMS_1_1GaussFitter1D.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1GaussModel.html">GaussModel</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Normal distribution approximated using linear interpolation. <a href="classOpenMS_1_1GaussModel.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1GaussTraceFitter.html">GaussTraceFitter</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Fitter for RT profiles using a gaussian background model. <a href="classOpenMS_1_1GaussTraceFitter.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1InterpolationModel.html">InterpolationModel</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Abstract class for 1D-models that are approximated using linear interpolation. <a href="classOpenMS_1_1InterpolationModel.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IsotopeFitter1D.html">IsotopeFitter1D</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Isotope distribution fitter (1-dim.) approximated using linear interpolation. <a href="classOpenMS_1_1IsotopeFitter1D.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IsotopeModel.html">IsotopeModel</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Isotope distribution approximated using linear interpolation. <a href="classOpenMS_1_1IsotopeModel.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IsotopeWavelet.html">IsotopeWavelet</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Implements the isotope wavelet function. <a href="classOpenMS_1_1IsotopeWavelet.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IsotopeWaveletParallelFor.html">IsotopeWaveletParallelFor</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A class for distributing the data over several GPUs using Intel Threading Building Blocks. <a href="classOpenMS_1_1IsotopeWaveletParallelFor.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1cudaHelp.html">cudaHelp</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">An internally used class, subsuming several variables. <a href="classOpenMS_1_1cudaHelp.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IsotopeWaveletTransform.html">IsotopeWaveletTransform</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A class implementing the isotope wavelet transform. If you just want to find features using the isotope wavelet, take a look at the <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmIsotopeWavelet.html" title="Implements the isotope wavelet feature finder. ">FeatureFinderAlgorithmIsotopeWavelet</a> class. Usually, you only have to consider the class at hand if you plan to change the basic implementation of the transform. <a href="classOpenMS_1_1IsotopeWaveletTransform.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LevMarqFitter1D.html">LevMarqFitter1D</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Abstract class for 1D-model fitter using Levenberg-Marquardt algorithm for parameter optimization. <a href="classOpenMS_1_1LevMarqFitter1D.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LmaGaussFitter1D.html">LmaGaussFitter1D</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Gaussian distribution fitter (1-dim.) using Levenberg-Marquardt algorithm (GSL implementation) for parameter optimization. <a href="classOpenMS_1_1LmaGaussFitter1D.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LmaGaussModel.html">LmaGaussModel</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Normal distribution model for elution profiles. <a href="classOpenMS_1_1LmaGaussModel.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LmaIsotopeFitter1D.html">LmaIsotopeFitter1D</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Isotope distribution fitter (1-dim.) approximated using Levenberg-Marquardt algorithm (GSL implementation) for parameter optimization. <a href="classOpenMS_1_1LmaIsotopeFitter1D.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LmaIsotopeModel.html">LmaIsotopeModel</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Isotope distribution approximated using linear interpolation. <a href="classOpenMS_1_1LmaIsotopeModel.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MaxLikeliFitter1D.html">MaxLikeliFitter1D</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Abstract base class for all 1D-model fitters using maximum likelihood optimization. <a href="classOpenMS_1_1MaxLikeliFitter1D.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelDescription.html">ModelDescription</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Stores the name and parameters of a model. <a href="classOpenMS_1_1ModelDescription.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModelFitter.html">ModelFitter</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Tests a group of data points in an LC-MS map for goodness-of-fit with a 2D averagine model. <a href="classOpenMS_1_1ModelFitter.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeakWidthEstimator.html">PeakWidthEstimator</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">This class implements a peak width estimation algorithm best suited for high resolution MS data (FT-ICR-MS, Orbitrap). Peaks are detected and a spline is fitted to the raw data in a window around the peak. Then a search for to the half-maximum is performed on the spline to the left and right of the peak maximum. The Full Width at the Half Maximum is collected. Finally a linear regression is performed to determine FWHM(m/z) <a href="classOpenMS_1_1PeakWidthEstimator.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProductModel.html">ProductModel</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class for product models i.e. models with D independent dimensions. <a href="classOpenMS_1_1ProductModel.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProductModel_3_012_01_4.html">ProductModel< 2 ></a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">The class template is only implemented for D=2 because we use <a class="el" href="classOpenMS_1_1Peak2D.html" title="A 2-dimensional raw data point or peak. ">Peak2D</a> here. <a href="classOpenMS_1_1ProductModel_3_012_01_4.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SeedListGenerator.html">SeedListGenerator</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Generate seed lists for feature detection. <a href="classOpenMS_1_1SeedListGenerator.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SimpleExtender.html">SimpleExtender</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Simple feature extension algorithm. <a href="classOpenMS_1_1SimpleExtender.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SimpleSeeder.html">SimpleSeeder</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Simple seeding class that uses the strongest peak as next seed. <a href="classOpenMS_1_1SimpleSeeder.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BackgroundControl.html">BackgroundControl</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BackgroundIntensityBin.html">BackgroundIntensityBin</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1CentroidData.html">CentroidData</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1CentroidPeak.html">CentroidPeak</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DeconvPeak.html">DeconvPeak</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html">ClusteredMS2ConsensusSpectrum</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ConsensusIsotopePattern.html">ConsensusIsotopePattern</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Deisotoper.html">Deisotoper</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1MS1Signal.html">MS1Signal</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureLCProfile.html">FeatureLCProfile</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FTPeakDetectController.html">FTPeakDetectController</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IsotopicDist.html">IsotopicDist</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LCElutionPeak.html">LCElutionPeak</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LCMS.html">LCMS</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LCMSCData.html">LCMSCData</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MS1FeatureMerger.html">MS1FeatureMerger</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MS2ConsensusSpectrum.html">MS2ConsensusSpectrum</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MS2Feature.html">MS2Feature</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MS2Fragment.html">MS2Fragment</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MS2Info.html">MS2Info</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MSPeak.html">MSPeak</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProcessData.html">ProcessData</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1RawData.html">RawData</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SHFeature.html">SHFeature</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SuperHirnParameters.html">SuperHirnParameters</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">SuperHirn parameters singleton class containing all static configuration variables. <a href="classOpenMS_1_1SuperHirnParameters.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SuperHirnUtil.html">SuperHirnUtil</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TraceFitter.html">TraceFitter</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Abstract fitter for RT profile fitting. <a href="classOpenMS_1_1TraceFitter.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ContinuousWaveletTransform.html">ContinuousWaveletTransform</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">This class is the base class of the continuous wavelet transformation. <a href="classOpenMS_1_1ContinuousWaveletTransform.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ContinuousWaveletTransformNumIntegration.html">ContinuousWaveletTransformNumIntegration</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">This class computes the continuous wavelet transformation using a marr wavelet. <a href="classOpenMS_1_1ContinuousWaveletTransformNumIntegration.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1OptimizePeakDeconvolution.html">OptimizePeakDeconvolution</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">This class provides the deconvolution of peak regions using non-linear optimization. <a href="classOpenMS_1_1OptimizePeakDeconvolution.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1OptimizePick.html">OptimizePick</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">This class provides the non-linear optimization of the peak parameters. <a href="classOpenMS_1_1OptimizePick.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeakPickerCWT.html">PeakPickerCWT</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">This class implements a peak picking algorithm using wavelet techniques. <a href="classOpenMS_1_1PeakPickerCWT.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeakPickerHiRes.html">PeakPickerHiRes</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">This class implements a fast peak-picking algorithm best suited for high resolution MS data (FT-ICR-MS, Orbitrap). In high resolution data, the signals of ions with similar mass-to-charge ratios (m/z) exhibit little or no overlapping and therefore allow for a clear separation. Furthermore, ion signals tend to show well-defined peak shapes with narrow peak width. <a href="classOpenMS_1_1PeakPickerHiRes.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeakPickerSH.html">PeakPickerSH</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1PeakShape.html">PeakShape</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="namespaceOpenMS_1_1Internal.html" title="Namespace used to hide implementation details from users. ">Internal</a> representation of a peak shape (used by the <a class="el" href="classOpenMS_1_1PeakPickerCWT.html" title="This class implements a peak picking algorithm using wavelet techniques. ">PeakPickerCWT</a>) <a href="structOpenMS_1_1PeakShape.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TwoDOptimization.html">TwoDOptimization</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">This class provides the two-dimensional optimization of the picked peak parameters. <a href="classOpenMS_1_1TwoDOptimization.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Annotation1DDistanceItem.html">Annotation1DDistanceItem</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">An annotation item which represents a measured distance between two peaks. <a href="classOpenMS_1_1Annotation1DDistanceItem.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Annotation1DItem.html">Annotation1DItem</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">An abstract class acting as an interface for the different 1D annotation items. <a href="classOpenMS_1_1Annotation1DItem.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Annotation1DPeakItem.html">Annotation1DPeakItem</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A peak annotation item. <a href="classOpenMS_1_1Annotation1DPeakItem.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Annotation1DTextItem.html">Annotation1DTextItem</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">An annotation item which represents an arbitrary text on the canvas. <a href="classOpenMS_1_1Annotation1DTextItem.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Annotations1DContainer.html">Annotations1DContainer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Container for annotations to content of <a class="el" href="classOpenMS_1_1Spectrum1DCanvas.html" title="Canvas for visualization of one or several spectra. ">Spectrum1DCanvas</a>. <a href="classOpenMS_1_1Annotations1DContainer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IDEvaluationBase.html">IDEvaluationBase</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Main window of the IDEvaluation tool. <a href="classOpenMS_1_1IDEvaluationBase.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1INIFileEditorWindow.html">INIFileEditorWindow</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">shows the <a class="el" href="classOpenMS_1_1ParamEditor.html" title="A GUI for editing or viewing a Param object. ">ParamEditor</a> widget in a <a class="el" href="classQMainWindow.html">QMainWindow</a> with a toolbar <a href="classOpenMS_1_1INIFileEditorWindow.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1QApplicationTOPP.html">QApplicationTOPP</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Extension to the <a class="el" href="classQApplication.html">QApplication</a> for running TOPPs GUI tools. <a href="classOpenMS_1_1QApplicationTOPP.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASBase.html">TOPPASBase</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Main window of the TOPPAS tool. <a href="classOpenMS_1_1TOPPASBase.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPViewBase.html">TOPPViewBase</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Main window of TOPPView tool. <a href="classOpenMS_1_1TOPPViewBase.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AxisPainter.html">AxisPainter</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Draws a coordinate axis. It has only static methods, that's why the constructor is private. <a href="classOpenMS_1_1AxisPainter.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AxisTickCalculator.html">AxisTickCalculator</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Calculates ticks for a given value range. <a href="classOpenMS_1_1AxisTickCalculator.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AxisWidget.html">AxisWidget</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Widget that represents an axis of a graph. <a href="classOpenMS_1_1AxisWidget.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ColorSelector.html">ColorSelector</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A widget for selecting a color. <a href="classOpenMS_1_1ColorSelector.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DataFilterDialog.html">DataFilterDialog</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Dialog for creating and changing a DataFilter. <a href="classOpenMS_1_1DataFilterDialog.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DBOpenDialog.html">DBOpenDialog</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Dialog that allow selecting a spectrum from a DB. <a href="classOpenMS_1_1DBOpenDialog.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureEditDialog.html">FeatureEditDialog</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Dialog for editing a feature. <a href="classOpenMS_1_1FeatureEditDialog.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1HistogramDialog.html">HistogramDialog</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Dialog that show a <a class="el" href="classOpenMS_1_1HistogramWidget.html" title="Widget which can visualize a histogram. ">HistogramWidget</a>. <a href="classOpenMS_1_1HistogramDialog.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LayerStatisticsDialog.html">LayerStatisticsDialog</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Dialog showing statistics about the data of the current layer. <a href="classOpenMS_1_1LayerStatisticsDialog.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SaveImageDialog.html">SaveImageDialog</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Dialog for saving an image. <a href="classOpenMS_1_1SaveImageDialog.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Spectrum1DGoToDialog.html">Spectrum1DGoToDialog</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">simple goto/set visible area dialog for exact placement of the viewing window <a href="classOpenMS_1_1Spectrum1DGoToDialog.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Spectrum2DGoToDialog.html">Spectrum2DGoToDialog</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">GoTo dialog used to zoom to a m/z and retention time range or to a feature. <a href="classOpenMS_1_1Spectrum2DGoToDialog.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumAlignmentDialog.html">SpectrumAlignmentDialog</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Lets the user select two spectra and set the parameters for the spectrum alignment. <a href="classOpenMS_1_1SpectrumAlignmentDialog.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TheoreticalSpectrumGenerationDialog.html">TheoreticalSpectrumGenerationDialog</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Dialog which allows to enter an AA sequence and generates a theoretical spectrum for it. <a href="classOpenMS_1_1TheoreticalSpectrumGenerationDialog.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ToolsDialog.html">ToolsDialog</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">TOPP tool selection dialog. <a href="classOpenMS_1_1ToolsDialog.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASInputFileDialog.html">TOPPASInputFileDialog</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Dialog which allows to specify an input file. <a href="classOpenMS_1_1TOPPASInputFileDialog.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASInputFilesDialog.html">TOPPASInputFilesDialog</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Dialog which allows to specify a list of input files. <a href="classOpenMS_1_1TOPPASInputFilesDialog.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASIOMappingDialog.html">TOPPASIOMappingDialog</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Dialog which allows to configure the input/output parameter mapping of an edge. <a href="classOpenMS_1_1TOPPASIOMappingDialog.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASOutputFilesDialog.html">TOPPASOutputFilesDialog</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Dialog which allows to specify the directory for the output files. <a href="classOpenMS_1_1TOPPASOutputFilesDialog.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASToolConfigDialog.html">TOPPASToolConfigDialog</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">TOPP tool configuration dialog. <a href="classOpenMS_1_1TOPPASToolConfigDialog.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASVertexNameDialog.html">TOPPASVertexNameDialog</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Dialog which allows to change the name of an input vertex. <a href="classOpenMS_1_1TOPPASVertexNameDialog.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPViewOpenDialog.html">TOPPViewOpenDialog</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Dataset opening options for TOPPView. <a href="classOpenMS_1_1TOPPViewOpenDialog.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EnhancedTabBar.html">EnhancedTabBar</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Convenience tab bar implementation. <a href="classOpenMS_1_1EnhancedTabBar.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EnhancedTabBarWidgetInterface.html">EnhancedTabBarWidgetInterface</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Widgets that are placed into an <a class="el" href="classOpenMS_1_1EnhancedTabBar.html" title="Convenience tab bar implementation. ">EnhancedTabBar</a> must implement this interface. <a href="classOpenMS_1_1EnhancedTabBarWidgetInterface.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1EnhancedWorkspace.html">EnhancedWorkspace</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1HistogramWidget.html">HistogramWidget</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Widget which can visualize a histogram. <a href="classOpenMS_1_1HistogramWidget.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1LayerData.html">LayerData</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class that stores the data for one layer. <a href="classOpenMS_1_1LayerData.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ListEditor.html">ListEditor</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Editor for editing int, double and string lists (including output and input file lists) <a href="classOpenMS_1_1ListEditor.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaDataBrowser.html">MetaDataBrowser</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A meta data visualization widget. <a href="classOpenMS_1_1MetaDataBrowser.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MultiGradient.html">MultiGradient</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A gradient of multiple colors and arbitrary distances between colors. <a href="classOpenMS_1_1MultiGradient.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MultiGradientSelector.html">MultiGradientSelector</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A widget witch allows constructing gradients of multiple colors. <a href="classOpenMS_1_1MultiGradientSelector.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ParamEditor.html">ParamEditor</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A GUI for editing or viewing a <a class="el" href="classOpenMS_1_1Param.html" title="Management and storage of parameters / INI files. ">Param</a> object. <a href="classOpenMS_1_1ParamEditor.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectraIdentificationViewWidget.html">SpectraIdentificationViewWidget</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Tabular visualization / selection of identified specra. <a href="classOpenMS_1_1SpectraIdentificationViewWidget.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectraViewWidget.html">SpectraViewWidget</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Hierarchical visualization and selection of spectra. <a href="classOpenMS_1_1SpectraViewWidget.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Spectrum1DCanvas.html">Spectrum1DCanvas</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Canvas for visualization of one or several spectra. <a href="classOpenMS_1_1Spectrum1DCanvas.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Spectrum1DWidget.html">Spectrum1DWidget</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Widget for visualization of several spectra. <a href="classOpenMS_1_1Spectrum1DWidget.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Spectrum2DCanvas.html">Spectrum2DCanvas</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Canvas for 2D-visualization of peak map, feature map and consensus map data. <a href="classOpenMS_1_1Spectrum2DCanvas.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Spectrum2DWidget.html">Spectrum2DWidget</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Widget for 2D-visualization of peak map and feature map data. <a href="classOpenMS_1_1Spectrum2DWidget.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Spectrum3DCanvas.html">Spectrum3DCanvas</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Canvas for 3D-visualization of peak map data. <a href="classOpenMS_1_1Spectrum3DCanvas.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Spectrum3DOpenGLCanvas.html">Spectrum3DOpenGLCanvas</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">OpenGL Canvas for 3D-visualization of map data. <a href="classOpenMS_1_1Spectrum3DOpenGLCanvas.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Spectrum3DWidget.html">Spectrum3DWidget</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Widget for 3D-visualization of map data. <a href="classOpenMS_1_1Spectrum3DWidget.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumCanvas.html">SpectrumCanvas</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Base class for visualization canvas classes. <a href="classOpenMS_1_1SpectrumCanvas.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumWidget.html">SpectrumWidget</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Base class for spectrum widgets. <a href="classOpenMS_1_1SpectrumWidget.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASEdge.html">TOPPASEdge</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">An edge representing a data flow in TOPPAS. <a href="classOpenMS_1_1TOPPASEdge.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASInputFileListVertex.html">TOPPASInputFileListVertex</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A vertex representing an input file list. <a href="classOpenMS_1_1TOPPASInputFileListVertex.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASLogWindow.html">TOPPASLogWindow</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classQTextEdit.html">QTextEdit</a> implementation with a "clear" button in the context menu. <a href="classOpenMS_1_1TOPPASLogWindow.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASMergerVertex.html">TOPPASMergerVertex</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A special vertex that allows to merge several inputs. <a href="classOpenMS_1_1TOPPASMergerVertex.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASOutputFileListVertex.html">TOPPASOutputFileListVertex</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A vertex representing an output file list. <a href="classOpenMS_1_1TOPPASOutputFileListVertex.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASResource.html">TOPPASResource</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Represents a data resource for TOPPAS workflows. <a href="classOpenMS_1_1TOPPASResource.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASResources.html">TOPPASResources</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A dictionary mapping string keys to lists of <a class="el" href="classOpenMS_1_1TOPPASResource.html" title="Represents a data resource for TOPPAS workflows. ">TOPPASResource</a> objects. <a href="classOpenMS_1_1TOPPASResources.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FakeProcess.html">FakeProcess</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A <a class="el" href="classOpenMS_1_1FakeProcess.html" title="A FakeProcess class. ">FakeProcess</a> class. <a href="classOpenMS_1_1FakeProcess.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASScene.html">TOPPASScene</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A container for all visual items of a TOPPAS workflow. <a href="classOpenMS_1_1TOPPASScene.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASTabBar.html">TOPPASTabBar</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Convenience tab bar implementation. <a href="classOpenMS_1_1TOPPASTabBar.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASToolVertex.html">TOPPASToolVertex</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A vertex representing a TOPP tool. <a href="classOpenMS_1_1TOPPASToolVertex.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASTreeView.html">TOPPASTreeView</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Tree view implementation for the list of TOPP tools. <a href="classOpenMS_1_1TOPPASTreeView.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASVertex.html">TOPPASVertex</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">The base class of the different vertex classes. <a href="classOpenMS_1_1TOPPASVertex.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPASWidget.html">TOPPASWidget</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Widget visualizing and allowing to edit TOPP pipelines. <a href="classOpenMS_1_1TOPPASWidget.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPViewBehaviorInterface.html">TOPPViewBehaviorInterface</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Interface class to model different behaviors of TOPPView. <a href="classOpenMS_1_1TOPPViewBehaviorInterface.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html">TOPPViewIdentificationViewBehavior</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Behavior of TOPPView in identification mode. <a href="classOpenMS_1_1TOPPViewIdentificationViewBehavior.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TOPPViewSpectraViewBehavior.html">TOPPViewSpectraViewBehavior</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Behavior of TOPPView in spectra view mode. <a href="classOpenMS_1_1TOPPViewSpectraViewBehavior.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AcquisitionInfoVisualizer.html">AcquisitionInfoVisualizer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class that displays all meta information for <a class="el" href="classOpenMS_1_1AcquisitionInfo.html" title="Description of the combination of raw data to a single spectrum. ">AcquisitionInfo</a> objects. <a href="classOpenMS_1_1AcquisitionInfoVisualizer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1AcquisitionVisualizer.html">AcquisitionVisualizer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class that displays all meta information for <a class="el" href="classOpenMS_1_1Acquisition.html" title="Information about one raw data spectrum that was combined with several other raw data spectra...">Acquisition</a> objects. <a href="classOpenMS_1_1AcquisitionVisualizer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BaseVisualizer.html">BaseVisualizer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A base class for all visualizer classes. <a href="classOpenMS_1_1BaseVisualizer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1BaseVisualizerGUI.html">BaseVisualizerGUI</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">A base class for all visualizer classes. <a href="classOpenMS_1_1BaseVisualizerGUI.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ContactPersonVisualizer.html">ContactPersonVisualizer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class that displays all meta information for <a class="el" href="classOpenMS_1_1ContactPerson.html" title="Contact person information. ">ContactPerson</a> objects. <a href="classOpenMS_1_1ContactPersonVisualizer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DataProcessingVisualizer.html">DataProcessingVisualizer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class that displays all meta information for <a class="el" href="classOpenMS_1_1DataProcessing.html" title="Descripton of the applied preprocessing steps. ">DataProcessing</a> objects. <a href="classOpenMS_1_1DataProcessingVisualizer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DigestionVisualizer.html">DigestionVisualizer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class that displays all meta information of digestion objects. <a href="classOpenMS_1_1DigestionVisualizer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1DocumentIdentifierVisualizer.html">DocumentIdentifierVisualizer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class that displays all meta information for <a class="el" href="classOpenMS_1_1DocumentIdentifier.html" title="Manage source document information. ">DocumentIdentifier</a> objects. <a href="classOpenMS_1_1DocumentIdentifierVisualizer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ExperimentalSettingsVisualizer.html">ExperimentalSettingsVisualizer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class that displays all meta information for <a class="el" href="classOpenMS_1_1ExperimentalSettings.html" title="Description of the experimental settings. ">ExperimentalSettings</a> objects. <a href="classOpenMS_1_1ExperimentalSettingsVisualizer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1GradientVisualizer.html">GradientVisualizer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1GradientVisualizer.html" title="GradientVisualizer is a visualizer class for objects of type gradient. ">GradientVisualizer</a> is a visualizer class for objects of type gradient. <a href="classOpenMS_1_1GradientVisualizer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1HPLCVisualizer.html">HPLCVisualizer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class that displays all meta information for <a class="el" href="classOpenMS_1_1HPLC.html" title="Representation of a HPLC experiment. ">HPLC</a> objects. <a href="classOpenMS_1_1HPLCVisualizer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1InstrumentSettingsVisualizer.html">InstrumentSettingsVisualizer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class that displays all meta information for <a class="el" href="classOpenMS_1_1InstrumentSettings.html" title="Description of the settings a MS Instrument was run with. ">InstrumentSettings</a> objects. <a href="classOpenMS_1_1InstrumentSettingsVisualizer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1InstrumentVisualizer.html">InstrumentVisualizer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class that displays all meta information for an MS instrument. <a href="classOpenMS_1_1InstrumentVisualizer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IonDetectorVisualizer.html">IonDetectorVisualizer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class that displays all meta information for <a class="el" href="classOpenMS_1_1IonDetector.html" title="Description of a ion detector (part of a MS Instrument) ">IonDetector</a> objects. <a href="classOpenMS_1_1IonDetectorVisualizer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1IonSourceVisualizer.html">IonSourceVisualizer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class that displays all meta information for <a class="el" href="classOpenMS_1_1IonSource.html" title="Description of a ion source (part of a MS Instrument) ">IonSource</a> objects. <a href="classOpenMS_1_1IonSourceVisualizer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MassAnalyzerVisualizer.html">MassAnalyzerVisualizer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class that displays all meta information for <a class="el" href="classOpenMS_1_1MassAnalyzer.html" title="Descripton of a mass analyzer (part of a MS Instrument) ">MassAnalyzer</a> objects. <a href="classOpenMS_1_1MassAnalyzerVisualizer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoDescriptionVisualizer.html">MetaInfoDescriptionVisualizer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class that displays all meta information for <a class="el" href="classOpenMS_1_1MetaInfoDescription.html" title="Description of the meta data arrays of MSSpectrum. ">MetaInfoDescription</a> objects. <a href="classOpenMS_1_1MetaInfoDescriptionVisualizer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1MetaInfoVisualizer.html">MetaInfoVisualizer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1MetaInfoVisualizer.html" title="MetaInfoVisualizer is a visualizer class for all classes that use one MetaInfo object as member...">MetaInfoVisualizer</a> is a visualizer class for all classes that use one <a class="el" href="classOpenMS_1_1MetaInfo.html" title="A Type-Name-Value tuple class. ">MetaInfo</a> object as member. <a href="classOpenMS_1_1MetaInfoVisualizer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ModificationVisualizer.html">ModificationVisualizer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class that displays all meta information of modification objects. <a href="classOpenMS_1_1ModificationVisualizer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeptideHitVisualizer.html">PeptideHitVisualizer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class that displays all meta information for <a class="el" href="classOpenMS_1_1PeptideHit.html" title="Representation of a peptide hit. ">PeptideHit</a> objects. <a href="classOpenMS_1_1PeptideHitVisualizer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PeptideIdentificationVisualizer.html">PeptideIdentificationVisualizer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class that displays all meta information for <a class="el" href="classOpenMS_1_1PeptideIdentification.html" title="Represents the peptide hits for a spectrum. ">PeptideIdentification</a> objects. <a href="classOpenMS_1_1PeptideIdentificationVisualizer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1PrecursorVisualizer.html">PrecursorVisualizer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class that displays all meta information for <a class="el" href="classOpenMS_1_1Precursor.html" title="Precursor meta information. ">Precursor</a> objects. <a href="classOpenMS_1_1PrecursorVisualizer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProductVisualizer.html">ProductVisualizer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class that displays all meta information for <a class="el" href="classOpenMS_1_1Product.html" title="Product meta information. ">Product</a> objects. <a href="classOpenMS_1_1ProductVisualizer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProteinHitVisualizer.html">ProteinHitVisualizer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class that displays all meta information for <a class="el" href="classOpenMS_1_1ProteinHit.html" title="Representation of a protein hit. ">ProteinHit</a> objects. <a href="classOpenMS_1_1ProteinHitVisualizer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ProteinIdentificationVisualizer.html">ProteinIdentificationVisualizer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class that displays all meta information for <a class="el" href="classOpenMS_1_1ProteinIdentification.html" title="Representation of a protein identification run. ">ProteinIdentification</a> objects. <a href="classOpenMS_1_1ProteinIdentificationVisualizer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SampleVisualizer.html">SampleVisualizer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class that displays all meta information of sample objects. <a href="classOpenMS_1_1SampleVisualizer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ScanWindowVisualizer.html">ScanWindowVisualizer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class that displays all meta information for <a class="el" href="structOpenMS_1_1ScanWindow.html" title="Scan window description. ">ScanWindow</a> objects. <a href="classOpenMS_1_1ScanWindowVisualizer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SoftwareVisualizer.html">SoftwareVisualizer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class that displays all meta information for <a class="el" href="classOpenMS_1_1Software.html" title="Description of the software used for processing. ">Software</a> objects. <a href="classOpenMS_1_1SoftwareVisualizer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SourceFileVisualizer.html">SourceFileVisualizer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class that displays all meta information for <a class="el" href="classOpenMS_1_1SourceFile.html" title="Description of a file location, used to store the origin of (meta) data. ">SourceFile</a> objects. <a href="classOpenMS_1_1SourceFileVisualizer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1SpectrumSettingsVisualizer.html">SpectrumSettingsVisualizer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class that displays all meta information for <a class="el" href="classOpenMS_1_1SpectrumSettings.html" title="Representation of 1D spectrum settings. ">SpectrumSettings</a> objects. <a href="classOpenMS_1_1SpectrumSettingsVisualizer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TaggingVisualizer.html">TaggingVisualizer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Class that displays all meta information of tagging objects. <a href="classOpenMS_1_1TaggingVisualizer.html#details">More...</a><br/></td></tr>
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</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="typedef-members"></a>
Typedefs</h2></td></tr>
<tr class="memitem:a22d9f4fd105b0fa0fb23e988f8d150e0"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1Map.html">Map</a><br class="typebreak"/>
< <a class="el" href="structOpenMS_1_1Internal_1_1ToolDescriptionInternal.html">Internal::ToolDescriptionInternal</a>, <br class="typebreak"/>
<a class="el" href="structOpenMS_1_1Internal_1_1ToolDescriptionInternal.html">Internal::ToolDescriptionInternal</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a22d9f4fd105b0fa0fb23e988f8d150e0">ToolMapping</a></td></tr>
<tr class="memdesc:a22d9f4fd105b0fa0fb23e988f8d150e0"><td class="mdescLeft"> </td><td class="mdescRight">Updates an INI. <a href="#a22d9f4fd105b0fa0fb23e988f8d150e0">More...</a><br/></td></tr>
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<tr class="memitem:a0fdc9d00812f09849fe267d1471236b1"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1Map.html">Map</a>< <a class="el" href="classOpenMS_1_1String.html">String</a>, <br class="typebreak"/>
<a class="el" href="structOpenMS_1_1Internal_1_1ToolDescription.html">Internal::ToolDescription</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a0fdc9d00812f09849fe267d1471236b1">ToolListType</a></td></tr>
<tr class="memdesc:a0fdc9d00812f09849fe267d1471236b1"><td class="mdescLeft"> </td><td class="mdescRight">Handles lists of TOPP and UTILS tools and their categories (for TOPPAS) <a href="#a0fdc9d00812f09849fe267d1471236b1">More...</a><br/></td></tr>
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<tr class="memitem:ga819125d1a012286826064bf22d5ef41e"><td class="memItemLeft" align="right" valign="top">typedef OPENMS_INT32_TYPE </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Concept.html#ga819125d1a012286826064bf22d5ef41e">Int32</a></td></tr>
<tr class="memdesc:ga819125d1a012286826064bf22d5ef41e"><td class="mdescLeft"> </td><td class="mdescRight">Signed integer type (32bit) <a href="group__Concept.html#ga819125d1a012286826064bf22d5ef41e">More...</a><br/></td></tr>
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<tr class="memitem:ga84f5fc936107ae0a002c345694c41dcd"><td class="memItemLeft" align="right" valign="top">typedef OPENMS_INT64_TYPE </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Concept.html#ga84f5fc936107ae0a002c345694c41dcd">Int64</a></td></tr>
<tr class="memdesc:ga84f5fc936107ae0a002c345694c41dcd"><td class="mdescLeft"> </td><td class="mdescRight">Signed integer type (64bit) <a href="group__Concept.html#ga84f5fc936107ae0a002c345694c41dcd">More...</a><br/></td></tr>
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<tr class="memitem:ga5162db95dc78bdf2e3a71d73bec703e9"><td class="memItemLeft" align="right" valign="top">typedef OPENMS_UINT64_TYPE </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Concept.html#ga5162db95dc78bdf2e3a71d73bec703e9">UInt64</a></td></tr>
<tr class="memdesc:ga5162db95dc78bdf2e3a71d73bec703e9"><td class="mdescLeft"> </td><td class="mdescRight">Unsigned integer type (64bit) <a href="group__Concept.html#ga5162db95dc78bdf2e3a71d73bec703e9">More...</a><br/></td></tr>
<tr class="separator:ga5162db95dc78bdf2e3a71d73bec703e9"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:gaf4f2dbb77400c8614517cde46809153e"><td class="memItemLeft" align="right" valign="top">typedef time_t </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Concept.html#gaf4f2dbb77400c8614517cde46809153e">Time</a></td></tr>
<tr class="memdesc:gaf4f2dbb77400c8614517cde46809153e"><td class="mdescLeft"> </td><td class="mdescRight">Time type. <a href="group__Concept.html#gaf4f2dbb77400c8614517cde46809153e">More...</a><br/></td></tr>
<tr class="separator:gaf4f2dbb77400c8614517cde46809153e"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:gaba0996d26f7be2572973245b51852757"><td class="memItemLeft" align="right" valign="top">typedef unsigned int </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Concept.html#gaba0996d26f7be2572973245b51852757">UInt</a></td></tr>
<tr class="memdesc:gaba0996d26f7be2572973245b51852757"><td class="mdescLeft"> </td><td class="mdescRight">Unsigned integer type. <a href="group__Concept.html#gaba0996d26f7be2572973245b51852757">More...</a><br/></td></tr>
<tr class="separator:gaba0996d26f7be2572973245b51852757"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ga7cc214a236ad3bb6ad435bdcf5262a3f"><td class="memItemLeft" align="right" valign="top">typedef int </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a></td></tr>
<tr class="memdesc:ga7cc214a236ad3bb6ad435bdcf5262a3f"><td class="mdescLeft"> </td><td class="mdescRight">Signed integer type. <a href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">More...</a><br/></td></tr>
<tr class="separator:ga7cc214a236ad3bb6ad435bdcf5262a3f"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:gab685845059e8a2c92743427d9a698c70"><td class="memItemLeft" align="right" valign="top">typedef float </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Concept.html#gab685845059e8a2c92743427d9a698c70">Real</a></td></tr>
<tr class="memdesc:gab685845059e8a2c92743427d9a698c70"><td class="mdescLeft"> </td><td class="mdescRight">Real type. <a href="group__Concept.html#gab685845059e8a2c92743427d9a698c70">More...</a><br/></td></tr>
<tr class="separator:gab685845059e8a2c92743427d9a698c70"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:gace75bfb1aba684e874dffee13738bd15"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classdouble.html">double</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a></td></tr>
<tr class="memdesc:gace75bfb1aba684e874dffee13738bd15"><td class="mdescLeft"> </td><td class="mdescRight">Double-precision real type. <a href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">More...</a><br/></td></tr>
<tr class="separator:gace75bfb1aba684e874dffee13738bd15"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ga2188f67f99d094978c35658f968fcbcb"><td class="memItemLeft" align="right" valign="top">typedef OPENMS_BYTE_TYPE </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Concept.html#ga2188f67f99d094978c35658f968fcbcb">Byte</a></td></tr>
<tr class="memdesc:ga2188f67f99d094978c35658f968fcbcb"><td class="mdescLeft"> </td><td class="mdescRight">Byte type. <a href="group__Concept.html#ga2188f67f99d094978c35658f968fcbcb">More...</a><br/></td></tr>
<tr class="separator:ga2188f67f99d094978c35658f968fcbcb"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:gab5658a38464ac4e09c792c26840150f1"><td class="memItemLeft" align="right" valign="top">typedef OPENMS_UINT64_TYPE </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a></td></tr>
<tr class="memdesc:gab5658a38464ac4e09c792c26840150f1"><td class="mdescLeft"> </td><td class="mdescRight">A unique object ID (as unsigned 64bit type). <a href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">More...</a><br/></td></tr>
<tr class="separator:gab5658a38464ac4e09c792c26840150f1"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:gaf9ecec2d692138fab9167164a457cbd4"><td class="memItemLeft" align="right" valign="top">typedef size_t </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a></td></tr>
<tr class="memdesc:gaf9ecec2d692138fab9167164a457cbd4"><td class="mdescLeft"> </td><td class="mdescRight">Size type e.g. used as variable which can hold result of size() <a href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">More...</a><br/></td></tr>
<tr class="separator:gaf9ecec2d692138fab9167164a457cbd4"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:gae113cb41304c6692c7bf5d0624dc6f0f"><td class="memItemLeft" align="right" valign="top">typedef ptrdiff_t </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Concept.html#gae113cb41304c6692c7bf5d0624dc6f0f">SignedSize</a></td></tr>
<tr class="memdesc:gae113cb41304c6692c7bf5d0624dc6f0f"><td class="mdescLeft"> </td><td class="mdescRight">Signed Size type e.g. used as pointer difference. <a href="group__Concept.html#gae113cb41304c6692c7bf5d0624dc6f0f">More...</a><br/></td></tr>
<tr class="separator:gae113cb41304c6692c7bf5d0624dc6f0f"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ac681a091df99c585b08e2a0ec9dd947e"><td class="memItemLeft" align="right" valign="top">typedef std::pair< <a class="el" href="classOpenMS_1_1String.html">String</a>, <br class="typebreak"/>
<a class="el" href="classOpenMS_1_1MzTabString.html">MzTabString</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#ac681a091df99c585b08e2a0ec9dd947e">MzTabOptionalColumnEntry</a></td></tr>
<tr class="separator:ac681a091df99c585b08e2a0ec9dd947e"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a363e49ff9e8b2360fe2c5ea713174f9a"><td class="memItemLeft" align="right" valign="top">typedef std::vector<br class="typebreak"/>
< <a class="el" href="structOpenMS_1_1MzTabProteinSectionRow.html">MzTabProteinSectionRow</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a363e49ff9e8b2360fe2c5ea713174f9a">MzTabProteinSectionRows</a></td></tr>
<tr class="separator:a363e49ff9e8b2360fe2c5ea713174f9a"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a7175e41aff13b9e0fdcd0263b3168dd4"><td class="memItemLeft" align="right" valign="top">typedef std::vector<br class="typebreak"/>
< <a class="el" href="structOpenMS_1_1MzTabPeptideSectionRow.html">MzTabPeptideSectionRow</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a7175e41aff13b9e0fdcd0263b3168dd4">MzTabPeptideSectionRows</a></td></tr>
<tr class="separator:a7175e41aff13b9e0fdcd0263b3168dd4"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae00d564626c32fae4110f1a1a4744484"><td class="memItemLeft" align="right" valign="top">typedef std::vector<br class="typebreak"/>
< <a class="el" href="structOpenMS_1_1MzTabSmallMoleculeSectionRow.html">MzTabSmallMoleculeSectionRow</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#ae00d564626c32fae4110f1a1a4744484">MzTabSmallMoleculeSectionRows</a></td></tr>
<tr class="separator:ae00d564626c32fae4110f1a1a4744484"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ab138037234b4e184fcff64484bebc524"><td class="memItemLeft" align="right" valign="top">typedef std::map< <a class="el" href="classOpenMS_1_1String.html">String</a>, <br class="typebreak"/>
<a class="el" href="structOpenMS_1_1MzTabUnitIdMetaData.html">MzTabUnitIdMetaData</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#ab138037234b4e184fcff64484bebc524">MzTabMetaData</a></td></tr>
<tr class="separator:ab138037234b4e184fcff64484bebc524"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a9f87de27dc814e7f89bcd4fce45f9a03"><td class="memItemLeft" align="right" valign="top">typedef std::map< <a class="el" href="classOpenMS_1_1String.html">String</a>, <br class="typebreak"/>
<a class="el" href="namespaceOpenMS.html#a363e49ff9e8b2360fe2c5ea713174f9a">MzTabProteinSectionRows</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a9f87de27dc814e7f89bcd4fce45f9a03">MzTabProteinSectionData</a></td></tr>
<tr class="separator:a9f87de27dc814e7f89bcd4fce45f9a03"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:abc4a193a549ea954836412f491fa9ad7"><td class="memItemLeft" align="right" valign="top">typedef std::map< <a class="el" href="classOpenMS_1_1String.html">String</a>, <br class="typebreak"/>
<a class="el" href="namespaceOpenMS.html#a7175e41aff13b9e0fdcd0263b3168dd4">MzTabPeptideSectionRows</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#abc4a193a549ea954836412f491fa9ad7">MzTabPeptideSectionData</a></td></tr>
<tr class="separator:abc4a193a549ea954836412f491fa9ad7"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a5e9cf9a9228d42860755a3bf685b0222"><td class="memItemLeft" align="right" valign="top">typedef std::map< <a class="el" href="classOpenMS_1_1String.html">String</a>, <br class="typebreak"/>
<a class="el" href="namespaceOpenMS.html#ae00d564626c32fae4110f1a1a4744484">MzTabSmallMoleculeSectionRows</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a5e9cf9a9228d42860755a3bf685b0222">MzTabSmallMoleculeSectionData</a></td></tr>
<tr class="separator:a5e9cf9a9228d42860755a3bf685b0222"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a013338b7bdbb5c3b4c78666656070e23"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1Peak2D.html">Peak2D</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a013338b7bdbb5c3b4c78666656070e23">PeakType</a></td></tr>
<tr class="separator:a013338b7bdbb5c3b4c78666656070e23"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a375f999020e3ba21026a3f0be0c079f6"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1Peak2D.html#a063d40a3528749f1a905ab04d76387e0">Peak2D::CoordinateType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a375f999020e3ba21026a3f0be0c079f6">SimCoordinateType</a></td></tr>
<tr class="memdesc:a375f999020e3ba21026a3f0be0c079f6"><td class="mdescLeft"> </td><td class="mdescRight">Coordinate type in mz and rt dimension. <a href="#a375f999020e3ba21026a3f0be0c079f6">More...</a><br/></td></tr>
<tr class="separator:a375f999020e3ba21026a3f0be0c079f6"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a1c6dc92dcdd8dd005518ab11d341ae5f"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1Peak2D.html#a4a8c5b2adc05e9ff96a007385bfe9b47">Peak2D::IntensityType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a1c6dc92dcdd8dd005518ab11d341ae5f">SimIntensityType</a></td></tr>
<tr class="memdesc:a1c6dc92dcdd8dd005518ab11d341ae5f"><td class="mdescLeft"> </td><td class="mdescRight">Abundance of proteins/peptides. <a href="#a1c6dc92dcdd8dd005518ab11d341ae5f">More...</a><br/></td></tr>
<tr class="separator:a1c6dc92dcdd8dd005518ab11d341ae5f"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aeeb197e95f7bd1ada2cca075468bab8f"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1BaseFeature.html#a87171116869a9f9511d7ce9ad7baf5d6">Feature::ChargeType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#aeeb197e95f7bd1ada2cca075468bab8f">SimChargeType</a></td></tr>
<tr class="memdesc:aeeb197e95f7bd1ada2cca075468bab8f"><td class="mdescLeft"> </td><td class="mdescRight">Charge of a peptide. <a href="#aeeb197e95f7bd1ada2cca075468bab8f">More...</a><br/></td></tr>
<tr class="separator:aeeb197e95f7bd1ada2cca075468bab8f"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ade9515c83ff4c03f40e7465d159daa67"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1Peak1D.html">Peak1D</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#ade9515c83ff4c03f40e7465d159daa67">SimPointType</a></td></tr>
<tr class="memdesc:ade9515c83ff4c03f40e7465d159daa67"><td class="mdescLeft"> </td><td class="mdescRight">Raw data point. <a href="#ade9515c83ff4c03f40e7465d159daa67">More...</a><br/></td></tr>
<tr class="separator:ade9515c83ff4c03f40e7465d159daa67"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a9396dc872898d760f035465bc56585d8"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1FeatureMap.html">FeatureMap</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a9396dc872898d760f035465bc56585d8">FeatureMapSim</a></td></tr>
<tr class="memdesc:a9396dc872898d760f035465bc56585d8"><td class="mdescLeft"> </td><td class="mdescRight">Sim <a class="el" href="classOpenMS_1_1FeatureMap.html" title="A container for features. ">FeatureMap</a>. <a href="#a9396dc872898d760f035465bc56585d8">More...</a><br/></td></tr>
<tr class="separator:a9396dc872898d760f035465bc56585d8"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a5377a8d620ef376a0b1eb2503b847e79"><td class="memItemLeft" align="right" valign="top">typedef std::vector<br class="typebreak"/>
< <a class="el" href="namespaceOpenMS.html#a9396dc872898d760f035465bc56585d8">FeatureMapSim</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a5377a8d620ef376a0b1eb2503b847e79">FeatureMapSimVector</a></td></tr>
<tr class="memdesc:a5377a8d620ef376a0b1eb2503b847e79"><td class="mdescLeft"> </td><td class="mdescRight">Sim <a class="el" href="classOpenMS_1_1FeatureMap.html" title="A container for features. ">FeatureMap</a> Vector. <a href="#a5377a8d620ef376a0b1eb2503b847e79">More...</a><br/></td></tr>
<tr class="separator:a5377a8d620ef376a0b1eb2503b847e79"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ad8fab082e8d37c2f39ca13d92608d71d"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1MSExperiment.html">MSExperiment</a><br class="typebreak"/>
< <a class="el" href="namespaceOpenMS.html#ade9515c83ff4c03f40e7465d159daa67">SimPointType</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#ad8fab082e8d37c2f39ca13d92608d71d">MSSimExperiment</a></td></tr>
<tr class="memdesc:ad8fab082e8d37c2f39ca13d92608d71d"><td class="mdescLeft"> </td><td class="mdescRight">Sim <a class="el" href="classOpenMS_1_1MSExperiment.html" title="Representation of a mass spectrometry experiment. ">MSExperiment</a> type. <a href="#ad8fab082e8d37c2f39ca13d92608d71d">More...</a><br/></td></tr>
<tr class="separator:ad8fab082e8d37c2f39ca13d92608d71d"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ga69e18760fc6f819a5a7d5bec62f1c44e"><td class="memItemLeft" align="right" valign="top">typedef std::pair< <a class="el" href="classdouble.html">double</a>, <br class="typebreak"/>
boost::shared_ptr< <a class="el" href="classOpenMS_1_1RawData.html">RawData</a> > > </td><td class="memItemRight" valign="bottom"><a class="el" href="group__FeatureFinder.html#ga69e18760fc6f819a5a7d5bec62f1c44e">MyMap</a></td></tr>
<tr class="memdesc:ga69e18760fc6f819a5a7d5bec62f1c44e"><td class="mdescLeft"> </td><td class="mdescRight">A facade for various Superhirn <a class="el" href="classOpenMS_1_1FeatureFinder.html" title="The main feature finder class. ">FeatureFinder</a> classes. Use <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmSH.html" title="The Superhirn FeatureFinderAlgorithm. ">FeatureFinderAlgorithmSH</a> instead. <a href="group__FeatureFinder.html#ga69e18760fc6f819a5a7d5bec62f1c44e">More...</a><br/></td></tr>
<tr class="separator:ga69e18760fc6f819a5a7d5bec62f1c44e"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:afc24cc74414bcf1d9129d3e8d4eb1a7f"><td class="memItemLeft" align="right" valign="top">typedef std::vector< <a class="el" href="group__FeatureFinder.html#ga69e18760fc6f819a5a7d5bec62f1c44e">MyMap</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#afc24cc74414bcf1d9129d3e8d4eb1a7f">Vec</a></td></tr>
<tr class="separator:afc24cc74414bcf1d9129d3e8d4eb1a7f"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:af18558f60329d153e5f439e6b6cbc6fa"><td class="memItemLeft" align="right" valign="top">typedef std::multimap< int, <br class="typebreak"/>
<a class="el" href="classOpenMS_1_1MSPeak.html">MSPeak</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#af18558f60329d153e5f439e6b6cbc6fa">elution_peak</a></td></tr>
<tr class="separator:af18558f60329d153e5f439e6b6cbc6fa"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ab69ab1a8bcf64e4e36a57672502f93dc"><td class="memItemLeft" align="right" valign="top">typedef std::vector< <a class="el" href="namespaceOpenMS.html#af18558f60329d153e5f439e6b6cbc6fa">elution_peak</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#ab69ab1a8bcf64e4e36a57672502f93dc">MZ_series</a></td></tr>
<tr class="separator:ab69ab1a8bcf64e4e36a57672502f93dc"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a79e6b2973636a97ad0228a737ddcbed6"><td class="memItemLeft" align="right" valign="top">typedef std::vector<br class="typebreak"/>
< <a class="el" href="namespaceOpenMS.html#af18558f60329d153e5f439e6b6cbc6fa">elution_peak</a> >::iterator </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a79e6b2973636a97ad0228a737ddcbed6">MZ_series_ITERATOR</a></td></tr>
<tr class="separator:a79e6b2973636a97ad0228a737ddcbed6"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a86f33425d6d3c820cf964cacc9a3fd34"><td class="memItemLeft" align="right" valign="top">typedef std::multimap< int, <br class="typebreak"/>
<a class="el" href="classOpenMS_1_1MSPeak.html">MSPeak</a> >::iterator </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a86f33425d6d3c820cf964cacc9a3fd34">SIGNAL_iterator</a></td></tr>
<tr class="separator:a86f33425d6d3c820cf964cacc9a3fd34"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a4f92a8b7b3b84bb5f0b687b1ddcb8680"><td class="memItemLeft" align="right" valign="top">typedef std::map< int, <br class="typebreak"/>
<a class="el" href="classOpenMS_1_1LCElutionPeak.html">LCElutionPeak</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a4f92a8b7b3b84bb5f0b687b1ddcb8680">elution_peak_list</a></td></tr>
<tr class="separator:a4f92a8b7b3b84bb5f0b687b1ddcb8680"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a16b9767ab947be73b33cfcaf82cb6ec2"><td class="memItemLeft" align="right" valign="top">typedef std::map< int, <br class="typebreak"/>
<a class="el" href="classOpenMS_1_1LCElutionPeak.html">LCElutionPeak</a> >::iterator </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a16b9767ab947be73b33cfcaf82cb6ec2">elution_peak_list_ITERATOR</a></td></tr>
<tr class="separator:a16b9767ab947be73b33cfcaf82cb6ec2"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a1bff9fc323674bfd92b93ff627e1efec"><td class="memItemLeft" align="right" valign="top">typedef std::map< <a class="el" href="classdouble.html">double</a>, <br class="typebreak"/>
<a class="el" href="namespaceOpenMS.html#a4f92a8b7b3b84bb5f0b687b1ddcb8680">elution_peak_list</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a1bff9fc323674bfd92b93ff627e1efec">MZ_LIST</a></td></tr>
<tr class="separator:a1bff9fc323674bfd92b93ff627e1efec"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a63ab31d0a2bd812d4649e71a3a83c67a"><td class="memItemLeft" align="right" valign="top">typedef MZ_LIST::iterator </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a63ab31d0a2bd812d4649e71a3a83c67a">MZ_LIST_ITERATOR</a></td></tr>
<tr class="separator:a63ab31d0a2bd812d4649e71a3a83c67a"><td class="memSeparator" colspan="2"> </td></tr>
<tr><td colspan="2"><div class="groupHeader"></div></td></tr>
<tr class="memitem:ga3ba16951dc40c7a6c7457f3452e096ab"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1MSSpectrum.html">MSSpectrum</a>< <a class="el" href="classOpenMS_1_1Peak1D.html">Peak1D</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Kernel.html#ga3ba16951dc40c7a6c7457f3452e096ab">PeakSpectrum</a></td></tr>
<tr class="memdesc:ga3ba16951dc40c7a6c7457f3452e096ab"><td class="mdescLeft"> </td><td class="mdescRight">Spectrum consisting of raw data points or peaks. <a href="group__Kernel.html#ga3ba16951dc40c7a6c7457f3452e096ab">More...</a><br/></td></tr>
<tr class="separator:ga3ba16951dc40c7a6c7457f3452e096ab"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:gac459ab9d68b68f31561c7763c7da61ef"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1MSExperiment.html">MSExperiment</a>< <a class="el" href="classOpenMS_1_1Peak1D.html">Peak1D</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Kernel.html#gac459ab9d68b68f31561c7763c7da61ef">PeakMap</a></td></tr>
<tr class="memdesc:gac459ab9d68b68f31561c7763c7da61ef"><td class="mdescLeft"> </td><td class="mdescRight">Two-dimensional map of raw data points or peaks. <a href="group__Kernel.html#gac459ab9d68b68f31561c7763c7da61ef">More...</a><br/></td></tr>
<tr class="separator:gac459ab9d68b68f31561c7763c7da61ef"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:gae09df17325d781f23b1486a2db006e0d"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1MSSpectrum.html">MSSpectrum</a>< <a class="el" href="classOpenMS_1_1RichPeak1D.html">RichPeak1D</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Kernel.html#gae09df17325d781f23b1486a2db006e0d">RichPeakSpectrum</a></td></tr>
<tr class="memdesc:gae09df17325d781f23b1486a2db006e0d"><td class="mdescLeft"> </td><td class="mdescRight">Spectrum consisting of raw data points or peaks with meta information. <a href="group__Kernel.html#gae09df17325d781f23b1486a2db006e0d">More...</a><br/></td></tr>
<tr class="separator:gae09df17325d781f23b1486a2db006e0d"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ga194ebcb2ab563f6bb680c2b1f94bcde7"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1MSExperiment.html">MSExperiment</a>< <a class="el" href="classOpenMS_1_1RichPeak1D.html">RichPeak1D</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Kernel.html#ga194ebcb2ab563f6bb680c2b1f94bcde7">RichPeakMap</a></td></tr>
<tr class="memdesc:ga194ebcb2ab563f6bb680c2b1f94bcde7"><td class="mdescLeft"> </td><td class="mdescRight">Two-dimensional map of raw data points or peaks with meta information. <a href="group__Kernel.html#ga194ebcb2ab563f6bb680c2b1f94bcde7">More...</a><br/></td></tr>
<tr class="separator:ga194ebcb2ab563f6bb680c2b1f94bcde7"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ga4905fdd829fb6bac174a73740a1a038d"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classOpenMS_1_1MSChromatogram.html">MSChromatogram</a><br class="typebreak"/>
< <a class="el" href="classOpenMS_1_1ChromatogramPeak.html">ChromatogramPeak</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Kernel.html#ga4905fdd829fb6bac174a73740a1a038d">Chromatogram</a></td></tr>
<tr class="memdesc:ga4905fdd829fb6bac174a73740a1a038d"><td class="mdescLeft"> </td><td class="mdescRight">Chromatogram consisting of raw data points or peaks. <a href="group__Kernel.html#ga4905fdd829fb6bac174a73740a1a038d">More...</a><br/></td></tr>
<tr class="separator:ga4905fdd829fb6bac174a73740a1a038d"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="enum-members"></a>
Enumerations</h2></td></tr>
<tr class="memitem:a3adeced4cb527e033cb4945e71780235"><td class="memItemLeft" align="right" valign="top">enum  </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a3adeced4cb527e033cb4945e71780235">ASCII</a> { <br/>
  <a class="el" href="namespaceOpenMS.html#a3adeced4cb527e033cb4945e71780235a383301a5c7829cf8c0d81fdd735b3dcb">ASCII__BACKSPACE</a> = '\b',
<a class="el" href="namespaceOpenMS.html#a3adeced4cb527e033cb4945e71780235a9e7a71fe169344c26483bea5ec8539c5">ASCII__BELL</a> = '\a',
<a class="el" href="namespaceOpenMS.html#a3adeced4cb527e033cb4945e71780235ae786d7bc6e2bd1ddc803d54377234577">ASCII__CARRIAGE_RETURN</a> = '\r',
<a class="el" href="namespaceOpenMS.html#a3adeced4cb527e033cb4945e71780235a357197fc61eadcd5673092b4f0ab427c">ASCII__HORIZONTAL_TAB</a> = '\t',
<br/>
  <a class="el" href="namespaceOpenMS.html#a3adeced4cb527e033cb4945e71780235a65634050d9759a7f609e5b4c195ca893">ASCII__NEWLINE</a> = '\n',
<a class="el" href="namespaceOpenMS.html#a3adeced4cb527e033cb4945e71780235a434a150907ade99d5a8ac0ac499194f2">ASCII__RETURN</a> = ASCII__NEWLINE,
<a class="el" href="namespaceOpenMS.html#a3adeced4cb527e033cb4945e71780235ab4c91e970bffa34790db84e7b8f997c6">ASCII__SPACE</a> = ' ',
<a class="el" href="namespaceOpenMS.html#a3adeced4cb527e033cb4945e71780235a8ba0246c6824e3e51cbd15d8d1ee158e">ASCII__TAB</a> = ASCII__HORIZONTAL_TAB,
<br/>
  <a class="el" href="namespaceOpenMS.html#a3adeced4cb527e033cb4945e71780235af2250492a887a73bd7aa7c0dcdd019c4">ASCII__VERTICAL_TAB</a> = '\v',
<a class="el" href="namespaceOpenMS.html#a3adeced4cb527e033cb4945e71780235a9a04a590f3cefa87ee4c89e614b7b635">ASCII__COLON</a> = ':',
<a class="el" href="namespaceOpenMS.html#a3adeced4cb527e033cb4945e71780235a8dbd431b112c24e32a068e4506b53bf4">ASCII__COMMA</a> = ',',
<a class="el" href="namespaceOpenMS.html#a3adeced4cb527e033cb4945e71780235a0f85913ca83c4860f776c9fc1c9641a1">ASCII__EXCLAMATION_MARK</a> = '!',
<br/>
  <a class="el" href="namespaceOpenMS.html#a3adeced4cb527e033cb4945e71780235ad4e5750fdedb2e000868bef916830f80">ASCII__POINT</a> = '.',
<a class="el" href="namespaceOpenMS.html#a3adeced4cb527e033cb4945e71780235add63f1ebb8145d202e9da6fd63c89793">ASCII__QUESTION_MARK</a> = '?',
<a class="el" href="namespaceOpenMS.html#a3adeced4cb527e033cb4945e71780235a6dd7e64a95d27b6551f5ffc5963624f9">ASCII__SEMICOLON</a> = ';'
<br/>
}</td></tr>
<tr class="separator:a3adeced4cb527e033cb4945e71780235"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:gabfb38d02724e669a1f4b254e8ae24e46"><td class="memItemLeft" align="right" valign="top">enum  </td><td class="memItemRight" valign="bottom"><a class="el" href="group__FileIO.html#gabfb38d02724e669a1f4b254e8ae24e46">MzTabCellStateType</a> { <br/>
  <a class="el" href="group__FileIO.html#ggabfb38d02724e669a1f4b254e8ae24e46adfafdfb46f1c3154b17bc7cf3b494a55">MZTAB_CELLSTATE_DEFAULT</a>,
<a class="el" href="group__FileIO.html#ggabfb38d02724e669a1f4b254e8ae24e46a48160ee797ee7286e648c0eb425554cb">MZTAB_CELLSTATE_NULL</a>,
<a class="el" href="group__FileIO.html#ggabfb38d02724e669a1f4b254e8ae24e46a7e2b2fd9f8495ea858101b8f6b72ff0f">MZTAB_CELLSTATE_NAN</a>,
<a class="el" href="group__FileIO.html#ggabfb38d02724e669a1f4b254e8ae24e46a6465258af6efd7218d121b8216e3b686">MZTAB_CELLSTATE_INF</a>,
<br/>
  <a class="el" href="group__FileIO.html#ggabfb38d02724e669a1f4b254e8ae24e46a337defb4c1e30fe3406a887131638714">SIZE_OF_MZTAB_CELLTYPE</a>
<br/>
}</td></tr>
<tr class="memdesc:gabfb38d02724e669a1f4b254e8ae24e46"><td class="mdescLeft"> </td><td class="mdescRight">Data model of MzTab files. Please see the official MzTab specification at <a href="https://code.google.com/p/mztab/">https://code.google.com/p/mztab/</a>. <a href="group__FileIO.html#gabfb38d02724e669a1f4b254e8ae24e46">More...</a><br/></td></tr>
<tr class="separator:gabfb38d02724e669a1f4b254e8ae24e46"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
Functions</h2></td></tr>
<tr class="memitem:a74df8b74439d1f76961c8d987fb074fd"><td class="memItemLeft" align="right" valign="top">std::ostream & </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a74df8b74439d1f76961c8d987fb074fd">operator<<</a> (std::ostream &os, const <a class="el" href="structOpenMS_1_1ItraqQuantifier_1_1ItraqQuantifierStats.html">ItraqQuantifier::ItraqQuantifierStats</a> &stats)</td></tr>
<tr class="separator:a74df8b74439d1f76961c8d987fb074fd"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aa36b2ed6c06f4252dec15cd4f6d72635"><td class="memTemplParams" colspan="2">template<typename InputPeakType > </td></tr>
<tr class="memitem:aa36b2ed6c06f4252dec15cd4f6d72635"><td class="memTemplItemLeft" align="right" valign="top">bool </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#aa36b2ed6c06f4252dec15cd4f6d72635">enclosesBoundingBox</a> (const <a class="el" href="classOpenMS_1_1Feature.html">Feature</a> &f, typename <a class="el" href="classOpenMS_1_1MSExperiment.html">MSExperiment</a>< InputPeakType >::<a class="el" href="AdditiveSeries_8C.html#a75145a9f1f2689d0f54565ffbdb1f5d6">CoordinateType</a> rt, typename <a class="el" href="classOpenMS_1_1MSExperiment.html">MSExperiment</a>< InputPeakType >::<a class="el" href="AdditiveSeries_8C.html#a75145a9f1f2689d0f54565ffbdb1f5d6">CoordinateType</a> mz)</td></tr>
<tr class="separator:aa36b2ed6c06f4252dec15cd4f6d72635"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a24b1a9c3ebd7c67a0a0a1c4b9a17559f"><td class="memItemLeft" align="right" valign="top">std::ostream & </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a24b1a9c3ebd7c67a0a0a1c4b9a17559f">operator<<</a> (std::ostream &os, const <a class="el" href="structOpenMS_1_1PSLPFormulation_1_1IndexTriple.html">PSLPFormulation::IndexTriple</a> &triple)</td></tr>
<tr class="separator:a24b1a9c3ebd7c67a0a0a1c4b9a17559f"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ac07024ee03545d0deccf77af4a120d74"><td class="memItemLeft" align="right" valign="top">std::ostream & </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#ac07024ee03545d0deccf77af4a120d74">operator<<</a> (std::ostream &os, const <a class="el" href="classOpenMS_1_1AASequence.html">AASequence</a> &peptide)</td></tr>
<tr class="separator:ac07024ee03545d0deccf77af4a120d74"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a6c1cafd66e1de5000c3fca5125086a36"><td class="memItemLeft" align="right" valign="top">std::istream & </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a6c1cafd66e1de5000c3fca5125086a36">operator>></a> (std::istream &os, const <a class="el" href="classOpenMS_1_1AASequence.html">AASequence</a> &peptide)</td></tr>
<tr class="separator:a6c1cafd66e1de5000c3fca5125086a36"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a2426ec103183be364c5b497a006e6ffd"><td class="memItemLeft" align="right" valign="top">std::ostream & </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a2426ec103183be364c5b497a006e6ffd">operator<<</a> (std::ostream &, const <a class="el" href="classOpenMS_1_1Element.html">Element</a> &)</td></tr>
<tr class="separator:a2426ec103183be364c5b497a006e6ffd"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a29732d427efb500fed96b5ac8cea4870"><td class="memItemLeft" align="right" valign="top">std::ostream & </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a29732d427efb500fed96b5ac8cea4870">operator<<</a> (std::ostream &os, const <a class="el" href="classOpenMS_1_1EmpiricalFormula.html">EmpiricalFormula</a> &formula)</td></tr>
<tr class="separator:a29732d427efb500fed96b5ac8cea4870"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a7e0d1894a5f7f4df28aedd5acac908d6"><td class="memItemLeft" align="right" valign="top">std::ostream & </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a7e0d1894a5f7f4df28aedd5acac908d6">operator<<</a> (std::ostream &os, const <a class="el" href="classOpenMS_1_1Residue.html">Residue</a> &residue)</td></tr>
<tr class="separator:a7e0d1894a5f7f4df28aedd5acac908d6"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a58a825f137e452fa91ed983fddd61c8a"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a58a825f137e452fa91ed983fddd61c8a">compareBinaryTreeNode</a> (const <a class="el" href="classOpenMS_1_1BinaryTreeNode.html">BinaryTreeNode</a> &x, const <a class="el" href="classOpenMS_1_1BinaryTreeNode.html">BinaryTreeNode</a> &y)</td></tr>
<tr class="memdesc:a58a825f137e452fa91ed983fddd61c8a"><td class="mdescLeft"> </td><td class="mdescRight">returns the value of (x.distance < y.distance) for use with sort <a href="#a58a825f137e452fa91ed983fddd61c8a">More...</a><br/></td></tr>
<tr class="separator:a58a825f137e452fa91ed983fddd61c8a"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ad15f97e98db9a9e87137c7d65d30cf60"><td class="memTemplParams" colspan="2">template<UInt N, typename T > </td></tr>
<tr class="memitem:ad15f97e98db9a9e87137c7d65d30cf60"><td class="memTemplItemLeft" align="right" valign="top">std::size_t </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#ad15f97e98db9a9e87137c7d65d30cf60">hash_value</a> (const <a class="el" href="classOpenMS_1_1DPosition.html">DPosition</a>< N, T > &b)</td></tr>
<tr class="separator:ad15f97e98db9a9e87137c7d65d30cf60"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a71e5c86bce4ccbafc24c756049eb1cac"><td class="memTemplParams" colspan="2">template<class OP1 , class OP2 , class OP3 > </td></tr>
<tr class="memitem:a71e5c86bce4ccbafc24c756049eb1cac"><td class="memTemplItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1BinaryComposeFunctionAdapter.html">BinaryComposeFunctionAdapter</a><br class="typebreak"/>
< OP1, OP2, OP3 > </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a71e5c86bce4ccbafc24c756049eb1cac">binaryCompose</a> (const OP1 &o1, const OP2 &o2, const OP3 &o3)</td></tr>
<tr class="memdesc:a71e5c86bce4ccbafc24c756049eb1cac"><td class="mdescLeft"> </td><td class="mdescRight">Convenience function for the <code><a class="el" href="classOpenMS_1_1BinaryComposeFunctionAdapter.html" title="Represents the binary compose function object adapter. ">BinaryComposeFunctionAdapter</a></code> adapter. <a href="#a71e5c86bce4ccbafc24c756049eb1cac">More...</a><br/></td></tr>
<tr class="separator:a71e5c86bce4ccbafc24c756049eb1cac"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ga601a6eb8eddbe2aeab9a81da7d3ef318"><td class="memItemLeft" align="right" valign="top">std::ostream & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Exceptions.html#ga601a6eb8eddbe2aeab9a81da7d3ef318">operator<<</a> (std::ostream &os, const <a class="el" href="classOpenMS_1_1Exception_1_1BaseException.html">Exception::BaseException</a> &e)</td></tr>
<tr class="memdesc:ga601a6eb8eddbe2aeab9a81da7d3ef318"><td class="mdescLeft"> </td><td class="mdescRight">Output operator for exceptions. <a href="group__Exceptions.html#ga601a6eb8eddbe2aeab9a81da7d3ef318">More...</a><br/></td></tr>
<tr class="separator:ga601a6eb8eddbe2aeab9a81da7d3ef318"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a2a35f25eaae478fb21352b2cba2a962e"><td class="memItemLeft" align="right" valign="top">std::ostream & </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a2a35f25eaae478fb21352b2cba2a962e">operator<<</a> (std::ostream &os, <a class="el" href="classOpenMS_1_1LogConfigHandler.html">LogConfigHandler</a> const &lch)</td></tr>
<tr class="memdesc:a2a35f25eaae478fb21352b2cba2a962e"><td class="mdescLeft"> </td><td class="mdescRight">Overload for the <em>insertion</em> <em>operator</em> (operator<<) to have a formated output of the <a class="el" href="classOpenMS_1_1LogConfigHandler.html" title="The LogConfigHandler provides the functionality to configure the internal logging of OpenMS algorithm...">LogConfigHandler</a>. <a href="#a2a35f25eaae478fb21352b2cba2a962e">More...</a><br/></td></tr>
<tr class="separator:a2a35f25eaae478fb21352b2cba2a962e"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a3b93b0d99dee43280fbab30d0f29b820"><td class="memItemLeft" align="right" valign="top">std::ostream & </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a3b93b0d99dee43280fbab30d0f29b820">operator<<</a> (std::ostream &os, <a class="el" href="classOpenMS_1_1StreamHandler.html">StreamHandler</a> const &stream_handler)</td></tr>
<tr class="memdesc:a3b93b0d99dee43280fbab30d0f29b820"><td class="mdescLeft"> </td><td class="mdescRight">Overload for the <em>insertion</em> <em>operator</em> (operator<<) to have a formated output of the <a class="el" href="classOpenMS_1_1StreamHandler.html" title="Provides a central class to register globally used output streams. Currently supported streams are...">StreamHandler</a>. <a href="#a3b93b0d99dee43280fbab30d0f29b820">More...</a><br/></td></tr>
<tr class="separator:a3b93b0d99dee43280fbab30d0f29b820"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a6f7145ffc251038582da541efc38a0d1"><td class="memTemplParams" colspan="2">template<typename Type > </td></tr>
<tr class="memitem:a6f7145ffc251038582da541efc38a0d1"><td class="memTemplItemLeft" align="right" valign="top">std::string </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a6f7145ffc251038582da541efc38a0d1">typeAsString</a> (const Type &=Type())</td></tr>
<tr class="memdesc:a6f7145ffc251038582da541efc38a0d1"><td class="mdescLeft"> </td><td class="mdescRight">Returns the <code>Type</code> as as std::string. <a href="#a6f7145ffc251038582da541efc38a0d1">More...</a><br/></td></tr>
<tr class="separator:a6f7145ffc251038582da541efc38a0d1"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a33a4ca831ada6a30dfa3ab00a9e41e30"><td class="memTemplParams" colspan="2">template<class OP1 , class OP2 > </td></tr>
<tr class="memitem:a33a4ca831ada6a30dfa3ab00a9e41e30"><td class="memTemplItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1UnaryComposeFunctionAdapter.html">UnaryComposeFunctionAdapter</a><br class="typebreak"/>
< OP1, OP2 > </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a33a4ca831ada6a30dfa3ab00a9e41e30">unaryCompose</a> (const OP1 &o1, const OP2 &o2)</td></tr>
<tr class="memdesc:a33a4ca831ada6a30dfa3ab00a9e41e30"><td class="mdescLeft"> </td><td class="mdescRight">convenience function for the <code><a class="el" href="classOpenMS_1_1UnaryComposeFunctionAdapter.html" title="Represents the function object unary adapter. ">UnaryComposeFunctionAdapter</a></code> adapter <a href="#a33a4ca831ada6a30dfa3ab00a9e41e30">More...</a><br/></td></tr>
<tr class="separator:a33a4ca831ada6a30dfa3ab00a9e41e30"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a958be85a8492f31f1ea46e73d5acb540"><td class="memItemLeft" align="right" valign="top">std::ostream & </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a958be85a8492f31f1ea46e73d5acb540">operator<<</a> (std::ostream &os, const <a class="el" href="classOpenMS_1_1ChargePair.html">ChargePair</a> &cons)</td></tr>
<tr class="memdesc:a958be85a8492f31f1ea46e73d5acb540"><td class="mdescLeft"> </td><td class="mdescRight">Print the contents of a <a class="el" href="classOpenMS_1_1ChargePair.html" title="Representation of a (putative) link between two Features, which stem from the same compound but have ...">ChargePair</a> to a stream. <a href="#a958be85a8492f31f1ea46e73d5acb540">More...</a><br/></td></tr>
<tr class="separator:a958be85a8492f31f1ea46e73d5acb540"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a357232dec15f50c1541d653d5abef35f"><td class="memTemplParams" colspan="2">template<UInt D> </td></tr>
<tr class="memitem:a357232dec15f50c1541d653d5abef35f"><td class="memTemplItemLeft" align="right" valign="top">std::ostream & </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a357232dec15f50c1541d653d5abef35f">operator<<</a> (std::ostream &os, const <a class="el" href="classOpenMS_1_1DBoundingBox.html">DBoundingBox</a>< D > &bounding_box)</td></tr>
<tr class="memdesc:a357232dec15f50c1541d653d5abef35f"><td class="mdescLeft"> </td><td class="mdescRight">Print the contents to a stream. <a href="#a357232dec15f50c1541d653d5abef35f">More...</a><br/></td></tr>
<tr class="separator:a357232dec15f50c1541d653d5abef35f"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a0e63996aaaad98ee18ebc764903ca437"><td class="memTemplParams" colspan="2">template<typename Value > </td></tr>
<tr class="memitem:a0e63996aaaad98ee18ebc764903ca437"><td class="memTemplItemLeft" align="right" valign="top">std::ostream & </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a0e63996aaaad98ee18ebc764903ca437">operator<<</a> (std::ostream &os, const <a class="el" href="classOpenMS_1_1DistanceMatrix.html">DistanceMatrix</a>< Value > &matrix)</td></tr>
<tr class="memdesc:a0e63996aaaad98ee18ebc764903ca437"><td class="mdescLeft"> </td><td class="mdescRight">Print the contents to a stream. <a href="#a0e63996aaaad98ee18ebc764903ca437">More...</a><br/></td></tr>
<tr class="separator:a0e63996aaaad98ee18ebc764903ca437"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a938a33df5856a90299d3d7fbf9a4c02c"><td class="memTemplParams" colspan="2">template<UInt D, typename TCoordinateType > </td></tr>
<tr class="memitem:a938a33df5856a90299d3d7fbf9a4c02c"><td class="memTemplItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1DPosition.html">DPosition</a>< D, TCoordinateType > </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a938a33df5856a90299d3d7fbf9a4c02c">operator*</a> (<a class="el" href="classOpenMS_1_1DPosition.html">DPosition</a>< D, TCoordinateType > position, typename <a class="el" href="classOpenMS_1_1DPosition.html">DPosition</a>< D, TCoordinateType >::<a class="el" href="AdditiveSeries_8C.html#a75145a9f1f2689d0f54565ffbdb1f5d6">CoordinateType</a> scalar)</td></tr>
<tr class="memdesc:a938a33df5856a90299d3d7fbf9a4c02c"><td class="mdescLeft"> </td><td class="mdescRight">Scalar multiplication (a bit inefficient) <a href="#a938a33df5856a90299d3d7fbf9a4c02c">More...</a><br/></td></tr>
<tr class="separator:a938a33df5856a90299d3d7fbf9a4c02c"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aa9436427855f7a2ace231dae9a8c6a6b"><td class="memTemplParams" colspan="2">template<UInt D, typename TCoordinateType > </td></tr>
<tr class="memitem:aa9436427855f7a2ace231dae9a8c6a6b"><td class="memTemplItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1DPosition.html">DPosition</a>< D, TCoordinateType > </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#aa9436427855f7a2ace231dae9a8c6a6b">operator*</a> (typename <a class="el" href="classOpenMS_1_1DPosition.html">DPosition</a>< D, TCoordinateType >::<a class="el" href="AdditiveSeries_8C.html#a75145a9f1f2689d0f54565ffbdb1f5d6">CoordinateType</a> scalar, <a class="el" href="classOpenMS_1_1DPosition.html">DPosition</a>< D, TCoordinateType > position)</td></tr>
<tr class="memdesc:aa9436427855f7a2ace231dae9a8c6a6b"><td class="mdescLeft"> </td><td class="mdescRight">Scalar multiplication (a bit inefficient) <a href="#aa9436427855f7a2ace231dae9a8c6a6b">More...</a><br/></td></tr>
<tr class="separator:aa9436427855f7a2ace231dae9a8c6a6b"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ad6599f705c60d5a758abd093ec28aff5"><td class="memTemplParams" colspan="2">template<UInt D, typename TCoordinateType > </td></tr>
<tr class="memitem:ad6599f705c60d5a758abd093ec28aff5"><td class="memTemplItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1DPosition.html">DPosition</a>< D, TCoordinateType > </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#ad6599f705c60d5a758abd093ec28aff5">operator/</a> (<a class="el" href="classOpenMS_1_1DPosition.html">DPosition</a>< D, TCoordinateType > position, typename <a class="el" href="classOpenMS_1_1DPosition.html">DPosition</a>< D, TCoordinateType >::<a class="el" href="AdditiveSeries_8C.html#a75145a9f1f2689d0f54565ffbdb1f5d6">CoordinateType</a> scalar)</td></tr>
<tr class="memdesc:ad6599f705c60d5a758abd093ec28aff5"><td class="mdescLeft"> </td><td class="mdescRight">Scalar multiplication (a bit inefficient) <a href="#ad6599f705c60d5a758abd093ec28aff5">More...</a><br/></td></tr>
<tr class="separator:ad6599f705c60d5a758abd093ec28aff5"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a641a4eb6a407faea7361191a05c8e2e3"><td class="memTemplParams" colspan="2">template<UInt D, typename TCoordinateType > </td></tr>
<tr class="memitem:a641a4eb6a407faea7361191a05c8e2e3"><td class="memTemplItemLeft" align="right" valign="top">std::ostream & </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a641a4eb6a407faea7361191a05c8e2e3">operator<<</a> (std::ostream &os, const <a class="el" href="classOpenMS_1_1DPosition.html">DPosition</a>< D, TCoordinateType > &pos)</td></tr>
<tr class="memdesc:a641a4eb6a407faea7361191a05c8e2e3"><td class="mdescLeft"> </td><td class="mdescRight">Print the contents to a stream. <a href="#a641a4eb6a407faea7361191a05c8e2e3">More...</a><br/></td></tr>
<tr class="separator:a641a4eb6a407faea7361191a05c8e2e3"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aaf0dac9aded092d2dd9e5d80bf578b91"><td class="memTemplParams" colspan="2">template<UInt D> </td></tr>
<tr class="memitem:aaf0dac9aded092d2dd9e5d80bf578b91"><td class="memTemplItemLeft" align="right" valign="top">std::ostream & </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#aaf0dac9aded092d2dd9e5d80bf578b91">operator<<</a> (std::ostream &os, const <a class="el" href="classOpenMS_1_1DRange.html">DRange</a>< D > &area)</td></tr>
<tr class="memdesc:aaf0dac9aded092d2dd9e5d80bf578b91"><td class="mdescLeft"> </td><td class="mdescRight">Print the contents to a stream. <a href="#aaf0dac9aded092d2dd9e5d80bf578b91">More...</a><br/></td></tr>
<tr class="separator:aaf0dac9aded092d2dd9e5d80bf578b91"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a21f9e6fe70bb1ba507d9fbabd8947b59"><td class="memTemplParams" colspan="2">template<typename Value > </td></tr>
<tr class="memitem:a21f9e6fe70bb1ba507d9fbabd8947b59"><td class="memTemplItemLeft" align="right" valign="top">std::ostream & </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a21f9e6fe70bb1ba507d9fbabd8947b59">operator<<</a> (std::ostream &os, const <a class="el" href="classOpenMS_1_1Matrix.html">Matrix</a>< Value > &matrix)</td></tr>
<tr class="memdesc:a21f9e6fe70bb1ba507d9fbabd8947b59"><td class="mdescLeft"> </td><td class="mdescRight">Print the contents to a stream. <a href="#a21f9e6fe70bb1ba507d9fbabd8947b59">More...</a><br/></td></tr>
<tr class="separator:a21f9e6fe70bb1ba507d9fbabd8947b59"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:acc4982dd3f2e7862c8e7af78ef43e233"><td class="memItemLeft" align="right" valign="top">std::ostream & </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#acc4982dd3f2e7862c8e7af78ef43e233">operator<<</a> (std::ostream &os, const <a class="el" href="classOpenMS_1_1Param.html">Param</a> &param)</td></tr>
<tr class="memdesc:acc4982dd3f2e7862c8e7af78ef43e233"><td class="mdescLeft"> </td><td class="mdescRight">Output of <a class="el" href="classOpenMS_1_1Param.html" title="Management and storage of parameters / INI files. ">Param</a> to a stream. <a href="#acc4982dd3f2e7862c8e7af78ef43e233">More...</a><br/></td></tr>
<tr class="separator:acc4982dd3f2e7862c8e7af78ef43e233"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a0df1d6547b1eebbc40bcfb114457041a"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#ga819125d1a012286826064bf22d5ef41e">Int32</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a0df1d6547b1eebbc40bcfb114457041a">endianize32</a> (<a class="el" href="group__Concept.html#ga819125d1a012286826064bf22d5ef41e">Int32</a> &n)</td></tr>
<tr class="memdesc:a0df1d6547b1eebbc40bcfb114457041a"><td class="mdescLeft"> </td><td class="mdescRight">Endianizes a 32 bit type from big endian to little endian and vice versa. <a href="#a0df1d6547b1eebbc40bcfb114457041a">More...</a><br/></td></tr>
<tr class="separator:a0df1d6547b1eebbc40bcfb114457041a"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aaa7a3741c6bfd5f27efa81bdb7a371ea"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#ga84f5fc936107ae0a002c345694c41dcd">Int64</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#aaa7a3741c6bfd5f27efa81bdb7a371ea">endianize64</a> (<a class="el" href="group__Concept.html#ga84f5fc936107ae0a002c345694c41dcd">Int64</a> &n)</td></tr>
<tr class="memdesc:aaa7a3741c6bfd5f27efa81bdb7a371ea"><td class="mdescLeft"> </td><td class="mdescRight">Endianizes a 64 bit type from big endian to little endian and vice versa. <a href="#aaa7a3741c6bfd5f27efa81bdb7a371ea">More...</a><br/></td></tr>
<tr class="separator:aaa7a3741c6bfd5f27efa81bdb7a371ea"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ab52c44a095e42d2e3321c505ddacb3ec"><td class="memItemLeft" align="right" valign="top">std::ostream & </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#ab52c44a095e42d2e3321c505ddacb3ec">operator<<</a> (std::ostream &os, const <a class="el" href="classOpenMS_1_1ControlledVocabulary.html">ControlledVocabulary</a> &cv)</td></tr>
<tr class="memdesc:ab52c44a095e42d2e3321c505ddacb3ec"><td class="mdescLeft"> </td><td class="mdescRight">Print the contents to a stream. <a href="#ab52c44a095e42d2e3321c505ddacb3ec">More...</a><br/></td></tr>
<tr class="separator:ab52c44a095e42d2e3321c505ddacb3ec"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ab30f89fb6c1d85359f929454c417201c"><td class="memItemLeft" align="right" valign="top">std::ostream & </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#ab30f89fb6c1d85359f929454c417201c">operator<<</a> (std::ostream &os, const <a class="el" href="classOpenMS_1_1ChromatogramPeak.html">ChromatogramPeak</a> &point)</td></tr>
<tr class="memdesc:ab30f89fb6c1d85359f929454c417201c"><td class="mdescLeft"> </td><td class="mdescRight">Print the contents to a stream. <a href="#ab30f89fb6c1d85359f929454c417201c">More...</a><br/></td></tr>
<tr class="separator:ab30f89fb6c1d85359f929454c417201c"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aeb071107569224c672893cd945dff7fe"><td class="memTemplParams" colspan="2">template<class Cmp > </td></tr>
<tr class="memitem:aeb071107569224c672893cd945dff7fe"><td class="memTemplItemLeft" align="right" valign="top"><a class="el" href="structOpenMS_1_1PointerComparator.html">PointerComparator</a>< Cmp > </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#aeb071107569224c672893cd945dff7fe">pointerComparator</a> (Cmp const &cmp)</td></tr>
<tr class="memdesc:aeb071107569224c672893cd945dff7fe"><td class="mdescLeft"> </td><td class="mdescRight">Make-function to create a <a class="el" href="structOpenMS_1_1PointerComparator.html" title="Wrapper that takes a comparator for `something' and makes a comparator for pointers to `something' ou...">PointerComparator</a> from another comparator without the need to specify the template arguments. <a href="#aeb071107569224c672893cd945dff7fe">More...</a><br/></td></tr>
<tr class="separator:aeb071107569224c672893cd945dff7fe"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a74e80d32be63268d8a46039297e18cc6"><td class="memTemplParams" colspan="2">template<class Cmp > </td></tr>
<tr class="memitem:a74e80d32be63268d8a46039297e18cc6"><td class="memTemplItemLeft" align="right" valign="top"><a class="el" href="structOpenMS_1_1ReverseComparator.html">ReverseComparator</a>< Cmp > </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a74e80d32be63268d8a46039297e18cc6">reverseComparator</a> (Cmp const &cmp)</td></tr>
<tr class="memdesc:a74e80d32be63268d8a46039297e18cc6"><td class="mdescLeft"> </td><td class="mdescRight">Make-function to create a <a class="el" href="structOpenMS_1_1ReverseComparator.html" title="Wrapper that reverses (exchanges) the two arguments of a comparator. Normally you should use the make...">ReverseComparator</a> from another comparator without the need to specify the template arguments. <a href="#a74e80d32be63268d8a46039297e18cc6">More...</a><br/></td></tr>
<tr class="separator:a74e80d32be63268d8a46039297e18cc6"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ac4e734db514973176bfe65e0fa9905ae"><td class="memTemplParams" colspan="2">template<typename Cmp1 , typename Cmp2 > </td></tr>
<tr class="memitem:ac4e734db514973176bfe65e0fa9905ae"><td class="memTemplItemLeft" align="right" valign="top"><a class="el" href="structOpenMS_1_1LexicographicComparator.html">LexicographicComparator</a>< Cmp1, <br class="typebreak"/>
Cmp2 > </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#ac4e734db514973176bfe65e0fa9905ae">lexicographicComparator</a> (Cmp1 const &cmp1, Cmp2 const &cmp2)</td></tr>
<tr class="memdesc:ac4e734db514973176bfe65e0fa9905ae"><td class="mdescLeft"> </td><td class="mdescRight">Make-function to create a <a class="el" href="structOpenMS_1_1LexicographicComparator.html" title="A wrapper class that combines two comparators lexicographically. Normally you should use the make-fun...">LexicographicComparator</a> from two other comparators without the need to specify the template arguments. <a href="#ac4e734db514973176bfe65e0fa9905ae">More...</a><br/></td></tr>
<tr class="separator:ac4e734db514973176bfe65e0fa9905ae"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a896ff622afb616447cff234094ebe2f6"><td class="memItemLeft" align="right" valign="top">std::ostream & </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a896ff622afb616447cff234094ebe2f6">operator<<</a> (std::ostream &os, const <a class="el" href="classOpenMS_1_1ConsensusFeature.html">ConsensusFeature</a> &cons)</td></tr>
<tr class="memdesc:a896ff622afb616447cff234094ebe2f6"><td class="mdescLeft"> </td><td class="mdescRight">Print the contents of a <a class="el" href="classOpenMS_1_1ConsensusFeature.html" title="A 2-dimensional consensus feature. ">ConsensusFeature</a> to a stream. <a href="#a896ff622afb616447cff234094ebe2f6">More...</a><br/></td></tr>
<tr class="separator:a896ff622afb616447cff234094ebe2f6"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a5ba826db9dea677fd565214d7729957b"><td class="memItemLeft" align="right" valign="top">std::ostream & </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a5ba826db9dea677fd565214d7729957b">operator<<</a> (std::ostream &os, const <a class="el" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> &cons_map)</td></tr>
<tr class="memdesc:a5ba826db9dea677fd565214d7729957b"><td class="mdescLeft"> </td><td class="mdescRight">Print the contents of a <a class="el" href="classOpenMS_1_1ConsensusMap.html" title="A container for consensus elements. ">ConsensusMap</a> to a stream. <a href="#a5ba826db9dea677fd565214d7729957b">More...</a><br/></td></tr>
<tr class="separator:a5ba826db9dea677fd565214d7729957b"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ad7ee9ed750f8f19e5ddcee6ebc50b52d"><td class="memItemLeft" align="right" valign="top">std::ostream & </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#ad7ee9ed750f8f19e5ddcee6ebc50b52d">operator<<</a> (std::ostream &os, const <a class="el" href="classOpenMS_1_1FeatureHandle.html">FeatureHandle</a> &cons)</td></tr>
<tr class="memdesc:ad7ee9ed750f8f19e5ddcee6ebc50b52d"><td class="mdescLeft"> </td><td class="mdescRight">Print the contents of a <a class="el" href="classOpenMS_1_1FeatureHandle.html" title="Representation of a Peak2D, RichPeak2D or Feature . ">FeatureHandle</a> to a stream. <a href="#ad7ee9ed750f8f19e5ddcee6ebc50b52d">More...</a><br/></td></tr>
<tr class="separator:ad7ee9ed750f8f19e5ddcee6ebc50b52d"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:adb545662f94087fa82c88db96e6a4db5"><td class="memItemLeft" align="right" valign="top">std::ostream & </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#adb545662f94087fa82c88db96e6a4db5">operator<<</a> (std::ostream &os, const <a class="el" href="structOpenMS_1_1AnnotationStatistics.html">AnnotationStatistics</a> &ann)</td></tr>
<tr class="memdesc:adb545662f94087fa82c88db96e6a4db5"><td class="mdescLeft"> </td><td class="mdescRight">Print content of an <a class="el" href="structOpenMS_1_1AnnotationStatistics.html">AnnotationStatistics</a> object to a stream. <a href="#adb545662f94087fa82c88db96e6a4db5">More...</a><br/></td></tr>
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<tr class="memitem:a20512fd3d9c08770fd2805f00245562d"><td class="memTemplParams" colspan="2">template<typename FeatureType > </td></tr>
<tr class="memitem:a20512fd3d9c08770fd2805f00245562d"><td class="memTemplItemLeft" align="right" valign="top">std::ostream & </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a20512fd3d9c08770fd2805f00245562d">operator<<</a> (std::ostream &os, const <a class="el" href="classOpenMS_1_1FeatureMap.html">FeatureMap</a>< FeatureType > &map)</td></tr>
<tr class="memdesc:a20512fd3d9c08770fd2805f00245562d"><td class="mdescLeft"> </td><td class="mdescRight">Print content of a feature map to a stream. <a href="#a20512fd3d9c08770fd2805f00245562d">More...</a><br/></td></tr>
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<tr class="memitem:ac90f390b23c01d99b3376d9bdc3c209e"><td class="memTemplParams" colspan="2">template<typename PeakT > </td></tr>
<tr class="memitem:ac90f390b23c01d99b3376d9bdc3c209e"><td class="memTemplItemLeft" align="right" valign="top">std::ostream & </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#ac90f390b23c01d99b3376d9bdc3c209e">operator<<</a> (std::ostream &os, const <a class="el" href="classOpenMS_1_1MSChromatogram.html">MSChromatogram</a>< <a class="el" href="classPeakT.html">PeakT</a> > &spec)</td></tr>
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<tr class="memitem:aa075d940e1820aebc5b207976486a683"><td class="memTemplParams" colspan="2">template<typename PeakT , typename ChromatogramPeakT > </td></tr>
<tr class="memitem:aa075d940e1820aebc5b207976486a683"><td class="memTemplItemLeft" align="right" valign="top">std::ostream & </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#aa075d940e1820aebc5b207976486a683">operator<<</a> (std::ostream &os, const <a class="el" href="classOpenMS_1_1MSExperiment.html">MSExperiment</a>< <a class="el" href="classPeakT.html">PeakT</a>, ChromatogramPeakT > &exp)</td></tr>
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<tr class="memitem:aee46c503bfe62b31e6ead5eca10f82b8"><td class="memTemplParams" colspan="2">template<typename PeakT > </td></tr>
<tr class="memitem:aee46c503bfe62b31e6ead5eca10f82b8"><td class="memTemplItemLeft" align="right" valign="top">std::ostream & </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#aee46c503bfe62b31e6ead5eca10f82b8">operator<<</a> (std::ostream &os, const <a class="el" href="classOpenMS_1_1MSSpectrum.html">MSSpectrum</a>< <a class="el" href="classPeakT.html">PeakT</a> > &spec)</td></tr>
<tr class="memdesc:aee46c503bfe62b31e6ead5eca10f82b8"><td class="mdescLeft"> </td><td class="mdescRight">Print the contents to a stream. <a href="#aee46c503bfe62b31e6ead5eca10f82b8">More...</a><br/></td></tr>
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<tr class="memitem:ac0025237c4aa387db0fb119cd1bf41c0"><td class="memItemLeft" align="right" valign="top">std::ostream & </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#ac0025237c4aa387db0fb119cd1bf41c0">operator<<</a> (std::ostream &os, const <a class="el" href="classOpenMS_1_1Peak1D.html">Peak1D</a> &point)</td></tr>
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<tr class="memitem:aca70500ec8e3f633292ce4423122dfca"><td class="memItemLeft" align="right" valign="top">std::ostream & </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#aca70500ec8e3f633292ce4423122dfca">operator<<</a> (std::ostream &os, const <a class="el" href="classOpenMS_1_1Peak2D.html">Peak2D</a> &point)</td></tr>
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<tr class="memitem:aee6801e542b54cf05625815dd39dacc7"><td class="memItemLeft" align="right" valign="top">std::ostream & </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#aee6801e542b54cf05625815dd39dacc7">operator<<</a> (std::ostream &os, const <a class="el" href="classOpenMS_1_1ChromatogramSettings.html">ChromatogramSettings</a> &spec)</td></tr>
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<tr class="memitem:adae8fe19ab5017e473e5a2adb7101d67"><td class="memItemLeft" align="right" valign="top">std::ostream & </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#adae8fe19ab5017e473e5a2adb7101d67">operator<<</a> (std::ostream &os, const <a class="el" href="classOpenMS_1_1ExperimentalSettings.html">ExperimentalSettings</a> &exp)</td></tr>
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<tr class="memitem:a82c8917818980c194a141b3b7b5750f3"><td class="memItemLeft" align="right" valign="top">std::ostream & </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a82c8917818980c194a141b3b7b5750f3">operator<<</a> (std::ostream &os, const <a class="el" href="classOpenMS_1_1SpectrumSettings.html">SpectrumSettings</a> &spec)</td></tr>
<tr class="memdesc:a82c8917818980c194a141b3b7b5750f3"><td class="mdescLeft"> </td><td class="mdescRight">Print the contents to a stream. <a href="#a82c8917818980c194a141b3b7b5750f3">More...</a><br/></td></tr>
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<tr class="memitem:a1cfae714f6ee44e1ee1a8e7ad424de95"><td class="memItemLeft" align="right" valign="top">int </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a1cfae714f6ee44e1ee1a8e7ad424de95">checkCUDAError</a> (const char *msg)</td></tr>
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<tr class="memitem:aceb625a4ecfa2772148ef49e0e036da9"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#aceb625a4ecfa2772148ef49e0e036da9">getExternalCudaTransforms</a> (dim3 dimGrid, dim3 dimBlock, float *positions_dev, float *intensities_dev, int from_max_to_left, int from_max_to_right, float *result_dev, const int charge, const int to_load, const int to_compute, const int size, float *fwd2, bool highres=false)</td></tr>
<tr class="separator:aceb625a4ecfa2772148ef49e0e036da9"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a517b2dfc611bb3d0cc32026d3c68d344"><td class="memItemLeft" align="right" valign="top">int </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a517b2dfc611bb3d0cc32026d3c68d344">sortOnDevice</a> (float *array, int *pos_indices, int numElements, int padding)</td></tr>
<tr class="separator:a517b2dfc611bb3d0cc32026d3c68d344"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a9d73fc492754f9c984700dbd8bc9ca0b"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a9d73fc492754f9c984700dbd8bc9ca0b">scoreOnDevice</a> (int *sorted_positions_indices, float *trans_intensities, float *pos, float *scores, const int c, const int num_of_scores, const int overall_size, const unsigned int max_peak_cutoff, const float ampl_cutoff)</td></tr>
<tr class="separator:a9d73fc492754f9c984700dbd8bc9ca0b"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a973e93259c89ab41269eae9dc227065c"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a973e93259c89ab41269eae9dc227065c">deriveOnDevice</a> (float *spec, float *spec_pos, float *fwd, const int size, float *intensities_dev, bool highres=false)</td></tr>
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<tr class="memitem:aa07b2b496e649f9a8e0e3881088f05ca"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#aa07b2b496e649f9a8e0e3881088f05ca">myCudaComparator</a> (const <a class="el" href="classOpenMS_1_1cudaHelp.html">cudaHelp</a> &a, const <a class="el" href="classOpenMS_1_1cudaHelp.html">cudaHelp</a> &b)</td></tr>
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<tr class="memitem:a5a5872835f722f5e757e3e7782d84120"><td class="memTemplParams" colspan="2">template<typename PeakType > </td></tr>
<tr class="memitem:a5a5872835f722f5e757e3e7782d84120"><td class="memTemplItemLeft" align="right" valign="top">bool </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a5a5872835f722f5e757e3e7782d84120">intensityComparator</a> (const <a class="el" href="namespaceOpenMS.html#a013338b7bdbb5c3b4c78666656070e23">PeakType</a> &a, const <a class="el" href="namespaceOpenMS.html#a013338b7bdbb5c3b4c78666656070e23">PeakType</a> &b)</td></tr>
<tr class="separator:a5a5872835f722f5e757e3e7782d84120"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ac46a8fc51b287c355e88e3778ff61dab"><td class="memTemplParams" colspan="2">template<typename PeakType > </td></tr>
<tr class="memitem:ac46a8fc51b287c355e88e3778ff61dab"><td class="memTemplItemLeft" align="right" valign="top">bool </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#ac46a8fc51b287c355e88e3778ff61dab">intensityAscendingComparator</a> (const <a class="el" href="namespaceOpenMS.html#a013338b7bdbb5c3b4c78666656070e23">PeakType</a> &a, const <a class="el" href="namespaceOpenMS.html#a013338b7bdbb5c3b4c78666656070e23">PeakType</a> &b)</td></tr>
<tr class="separator:ac46a8fc51b287c355e88e3778ff61dab"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a66e95a71cb612182234eb778d0a2b83c"><td class="memTemplParams" colspan="2">template<typename PeakType > </td></tr>
<tr class="memitem:a66e95a71cb612182234eb778d0a2b83c"><td class="memTemplItemLeft" align="right" valign="top">bool </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a66e95a71cb612182234eb778d0a2b83c">intensityPointerComparator</a> (<a class="el" href="namespaceOpenMS.html#a013338b7bdbb5c3b4c78666656070e23">PeakType</a> *a, <a class="el" href="namespaceOpenMS.html#a013338b7bdbb5c3b4c78666656070e23">PeakType</a> *b)</td></tr>
<tr class="separator:a66e95a71cb612182234eb778d0a2b83c"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a98090d3ef79d5636476a89689b4367e0"><td class="memTemplParams" colspan="2">template<typename PeakType > </td></tr>
<tr class="memitem:a98090d3ef79d5636476a89689b4367e0"><td class="memTemplItemLeft" align="right" valign="top">bool </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a98090d3ef79d5636476a89689b4367e0">positionComparator</a> (const <a class="el" href="namespaceOpenMS.html#a013338b7bdbb5c3b4c78666656070e23">PeakType</a> &a, const <a class="el" href="namespaceOpenMS.html#a013338b7bdbb5c3b4c78666656070e23">PeakType</a> &b)</td></tr>
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<tr class="memitem:ab184b728eb7ad968a846241a1e1fe17a"><td class="memItemLeft" align="right" valign="top">std::ostream & </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#ab184b728eb7ad968a846241a1e1fe17a">operator<<</a> (std::ostream &, <a class="el" href="classOpenMS_1_1CentroidData.html">CentroidData</a> &)</td></tr>
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<tr class="memitem:a590608d7796c555379f92900213755fe"><td class="memItemLeft" align="right" valign="top">std::ostream & </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a590608d7796c555379f92900213755fe">operator<<</a> (std::ostream &, <a class="el" href="classOpenMS_1_1CentroidPeak.html">CentroidPeak</a> &)</td></tr>
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<tr class="memitem:a5b701ebfd64006600a70a1b1351e3b40"><td class="memItemLeft" align="right" valign="top">std::ostream & </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a5b701ebfd64006600a70a1b1351e3b40">operator<<</a> (std::ostream &, <a class="el" href="classOpenMS_1_1DeconvPeak.html">DeconvPeak</a> &)</td></tr>
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<tr class="memitem:a0c7639e34ae13cc410371ffd6ccdf659"><td class="memItemLeft" align="right" valign="top">std::ostream & </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a0c7639e34ae13cc410371ffd6ccdf659">operator<<</a> (std::ostream &, <a class="el" href="classOpenMS_1_1Deisotoper.html">Deisotoper</a> &)</td></tr>
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<tr class="memitem:a510b2e8af8e708cd886703c0e842d699"><td class="memItemLeft" align="right" valign="top">std::ostream & </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a510b2e8af8e708cd886703c0e842d699">operator<<</a> (std::ostream &out, <a class="el" href="classOpenMS_1_1RawData.html">RawData</a> &data)</td></tr>
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<tr class="memitem:a7bf820b36fb6ea7ccb81ba5565058a65"><td class="memItemLeft" align="right" valign="top">std::ostream & </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a7bf820b36fb6ea7ccb81ba5565058a65">operator<<</a> (std::ostream &os, const <a class="el" href="classOpenMS_1_1LayerData.html">LayerData</a> &rhs)</td></tr>
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<tr><td colspan="2"><div class="groupHeader">Numbers of digits used for writing floating point numbers (a.k.a. precision).</div></td></tr>
<tr><td colspan="2"><div class="groupText"><p>These functions are provided to unify the handling of this issue throughout OpenMS. (So please don't use ad-hoc numbers ;-) )</p>
<p>If you want to avoid side effects you can use <a class="el" href="namespaceOpenMS.html#af27ce8637a6a7cc24cc6fcbd3358791d" title="Wrapper function that sets the appropriate precision for output temporarily. The original precision i...">precisionWrapper()</a> to write a floating point number with appropriate precision; in this case the original state of the stream is automatically restored afterwards. See <a class="el" href="namespaceOpenMS.html#af27ce8637a6a7cc24cc6fcbd3358791d" title="Wrapper function that sets the appropriate precision for output temporarily. The original precision i...">precisionWrapper()</a> for details.</p>
<p>In practice, the number of decimal digits that the type can represent without loss of precision are 6 digits for single precision and 15 digits for double precision. We have <img class="formulaInl" alt="$2^{24}/10^{6}=16.777216$" src="form_53.png"/> and <img class="formulaInl" alt="$2^{53}/10^{15}=9.007199254740992$" src="form_54.png"/>, so rounding will remove the remaining difference.</p>
<p>Example: </p>
<div class="fragment"><div class="line"><span class="preprocessor">#define NUMBER 12345.67890123456789012345678901</span></div>
<div class="line"><span class="preprocessor"></span>std::cout << NUMBER << <span class="charliteral">'\n'</span>; <span class="comment">// default precision, writes: 12345.7</span></div>
<div class="line"></div>
<div class="line"><a class="code" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> d = NUMBER;</div>
<div class="line">std::cout.precision(writtenDigits<DoubleReal>()); <span class="comment">// explicit template instantiation</span></div>
<div class="line">std::cout << writtenDigits<DoubleReal>() << <span class="stringliteral">": "</span> << d << <span class="charliteral">'\n'</span>; <span class="comment">// writes: 15: 12345.6789012346</span></div>
<div class="line"></div>
<div class="line"><a class="code" href="classReal.html">Real</a> r = NUMBER;</div>
<div class="line">std::cout.precision(<a class="code" href="namespaceOpenMS.html#aea04da6adf64cf9ebd7ad8b4f2dc864e">writtenDigits</a>(r)); <span class="comment">// type deduced from argument</span></div>
<div class="line">std::cout << <a class="code" href="namespaceOpenMS.html#aea04da6adf64cf9ebd7ad8b4f2dc864e">writtenDigits</a>(r) << <span class="stringliteral">": "</span> << r << <span class="charliteral">'\n'</span>; <span class="comment">// writes: 6: 12345.7</span></div>
<div class="line"></div>
<div class="line"><span class="keywordtype">long</span> <span class="keywordtype">double</span> l = NUMBER;</div>
<div class="line">std::cout.precision(<a class="code" href="namespaceOpenMS.html#aea04da6adf64cf9ebd7ad8b4f2dc864e">writtenDigits</a>(1L)); <span class="comment">// argument is not used, but L suffix indicates a long double</span></div>
<div class="line">std::cout << <a class="code" href="namespaceOpenMS.html#aea04da6adf64cf9ebd7ad8b4f2dc864e">writtenDigits</a>(1L) << <span class="stringliteral">": "</span> << l << <span class="charliteral">'\n'</span>; <span class="comment">// writes: 18: 12345.6789012345671</span></div>
<div class="line"></div>
<div class="line"><a class="code" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> x = 88.99;</div>
<div class="line">std::cout.precision(15);</div>
<div class="line">std::cout << <span class="stringliteral">"15: "</span> << x << <span class="charliteral">'\n'</span>; <span class="comment">// writes: 15: 88.99</span></div>
<div class="line">std::cout.precision(16);</div>
<div class="line">std::cout << <span class="stringliteral">"16: "</span> << x << <span class="charliteral">'\n'</span>; <span class="comment">// writes: 16: 88.98999999999999</span></div>
</div><!-- fragment --> </div></td></tr>
<tr class="memitem:aea04da6adf64cf9ebd7ad8b4f2dc864e"><td class="memTemplParams" colspan="2">template<typename FloatingPointType > </td></tr>
<tr class="memitem:aea04da6adf64cf9ebd7ad8b4f2dc864e"><td class="memTemplItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#aea04da6adf64cf9ebd7ad8b4f2dc864e">writtenDigits</a> (const FloatingPointType &=FloatingPointType())</td></tr>
<tr class="memdesc:aea04da6adf64cf9ebd7ad8b4f2dc864e"><td class="mdescLeft"> </td><td class="mdescRight">Number of digits commonly used for writing a floating point type (a.k.a. precision). Specializations are defined for float, double, long double. <a href="#aea04da6adf64cf9ebd7ad8b4f2dc864e">More...</a><br/></td></tr>
<tr class="separator:aea04da6adf64cf9ebd7ad8b4f2dc864e"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:abcb447b6eef074736a8e638c5ae93dff"><td class="memTemplParams" colspan="2">template<> </td></tr>
<tr class="memitem:abcb447b6eef074736a8e638c5ae93dff"><td class="memTemplItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#abcb447b6eef074736a8e638c5ae93dff">writtenDigits< float ></a> (const float &)</td></tr>
<tr class="memdesc:abcb447b6eef074736a8e638c5ae93dff"><td class="mdescLeft"> </td><td class="mdescRight">Number of digits commonly used for writing a <code>float</code> (a.k.a. precision). <a href="#abcb447b6eef074736a8e638c5ae93dff">More...</a><br/></td></tr>
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<tr class="memitem:a2295bc33d2416f0078b0bbcf3246d84c"><td class="memTemplParams" colspan="2">template<> </td></tr>
<tr class="memitem:a2295bc33d2416f0078b0bbcf3246d84c"><td class="memTemplItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a2295bc33d2416f0078b0bbcf3246d84c">writtenDigits< double ></a> (const <a class="el" href="classdouble.html">double</a> &)</td></tr>
<tr class="memdesc:a2295bc33d2416f0078b0bbcf3246d84c"><td class="mdescLeft"> </td><td class="mdescRight">Number of digits commonly used for writing a <code>double</code> (a.k.a. precision). <a href="#a2295bc33d2416f0078b0bbcf3246d84c">More...</a><br/></td></tr>
<tr class="separator:a2295bc33d2416f0078b0bbcf3246d84c"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a84659c84ca3ab7f020d832429af59cd9"><td class="memTemplParams" colspan="2">template<> </td></tr>
<tr class="memitem:a84659c84ca3ab7f020d832429af59cd9"><td class="memTemplItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a84659c84ca3ab7f020d832429af59cd9">writtenDigits< int ></a> (const int &)</td></tr>
<tr class="memdesc:a84659c84ca3ab7f020d832429af59cd9"><td class="mdescLeft"> </td><td class="mdescRight">We do not want to bother people who unintentionally provide an int argument to this. <a href="#a84659c84ca3ab7f020d832429af59cd9">More...</a><br/></td></tr>
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<tr class="memitem:a8292b62eec34aac5d7b4245470a6b8e5"><td class="memTemplParams" colspan="2">template<> </td></tr>
<tr class="memitem:a8292b62eec34aac5d7b4245470a6b8e5"><td class="memTemplItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a8292b62eec34aac5d7b4245470a6b8e5">writtenDigits< unsigned int ></a> (const unsigned int &)</td></tr>
<tr class="memdesc:a8292b62eec34aac5d7b4245470a6b8e5"><td class="mdescLeft"> </td><td class="mdescRight">We do not want to bother people who unintentionally provide an unsigned int argument to this. <a href="#a8292b62eec34aac5d7b4245470a6b8e5">More...</a><br/></td></tr>
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<tr class="memitem:ad9c84687227622ee8f3f108f7cf45c27"><td class="memTemplParams" colspan="2">template<> </td></tr>
<tr class="memitem:ad9c84687227622ee8f3f108f7cf45c27"><td class="memTemplItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#ad9c84687227622ee8f3f108f7cf45c27">writtenDigits< long int ></a> (const long int &)</td></tr>
<tr class="memdesc:ad9c84687227622ee8f3f108f7cf45c27"><td class="mdescLeft"> </td><td class="mdescRight">We do not want to bother people who unintentionally provide a long int argument to this. <a href="#ad9c84687227622ee8f3f108f7cf45c27">More...</a><br/></td></tr>
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<tr class="memitem:a3b9befb6e4c7684f333d1c2cc923ca86"><td class="memTemplParams" colspan="2">template<> </td></tr>
<tr class="memitem:a3b9befb6e4c7684f333d1c2cc923ca86"><td class="memTemplItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a3b9befb6e4c7684f333d1c2cc923ca86">writtenDigits< unsigned long int ></a> (const unsigned long int &)</td></tr>
<tr class="memdesc:a3b9befb6e4c7684f333d1c2cc923ca86"><td class="mdescLeft"> </td><td class="mdescRight">We do not want to bother people who unintentionally provide an unsigned long int argument to this. <a href="#a3b9befb6e4c7684f333d1c2cc923ca86">More...</a><br/></td></tr>
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<tr class="memitem:a42c16145ae9ab753d804f67edd24c3da"><td class="memTemplParams" colspan="2">template<> </td></tr>
<tr class="memitem:a42c16145ae9ab753d804f67edd24c3da"><td class="memTemplItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a42c16145ae9ab753d804f67edd24c3da">writtenDigits< DataValue ></a> (const <a class="el" href="classOpenMS_1_1DataValue.html">DataValue</a> &)</td></tr>
<tr class="memdesc:a42c16145ae9ab753d804f67edd24c3da"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classOpenMS_1_1DataValue.html" title="Class to hold strings, numeric values, lists of strings and lists of numeric values. ">DataValue</a> will be printed like double. <a href="#a42c16145ae9ab753d804f67edd24c3da">More...</a><br/></td></tr>
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<tr class="memitem:a86aba4879d226689561da308ee22482f"><td class="memTemplParams" colspan="2">template<> </td></tr>
<tr class="memitem:a86aba4879d226689561da308ee22482f"><td class="memTemplItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a86aba4879d226689561da308ee22482f">writtenDigits< long double ></a> (const long <a class="el" href="classdouble.html">double</a> &)</td></tr>
<tr class="memdesc:a86aba4879d226689561da308ee22482f"><td class="mdescLeft"> </td><td class="mdescRight">Number of digits commonly used for writing a <code>long</code> <code>double</code> (a.k.a. precision). ... <a href="#a86aba4879d226689561da308ee22482f">More...</a><br/></td></tr>
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<tr class="memitem:af27ce8637a6a7cc24cc6fcbd3358791d"><td class="memTemplParams" colspan="2">template<typename FloatingPointType > </td></tr>
<tr class="memitem:af27ce8637a6a7cc24cc6fcbd3358791d"><td class="memTemplItemLeft" align="right" valign="top">const <a class="el" href="structOpenMS_1_1PrecisionWrapper.html">PrecisionWrapper</a><br class="typebreak"/>
< FloatingPointType > </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#af27ce8637a6a7cc24cc6fcbd3358791d">precisionWrapper</a> (const FloatingPointType rhs)</td></tr>
<tr class="memdesc:af27ce8637a6a7cc24cc6fcbd3358791d"><td class="mdescLeft"> </td><td class="mdescRight">Wrapper function that sets the appropriate precision for output temporarily. The original precision is restored afterwards so that no side effects remain. This is a "make"-function that deduces the typename FloatingPointType from its argument and returns a PrecisionWrapper<FloatingPointType>. <a href="#af27ce8637a6a7cc24cc6fcbd3358791d">More...</a><br/></td></tr>
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<tr class="memitem:a3a807457e27c47a1f9df50e693f09820"><td class="memTemplParams" colspan="2">template<typename FloatingPointType > </td></tr>
<tr class="memitem:a3a807457e27c47a1f9df50e693f09820"><td class="memTemplItemLeft" align="right" valign="top">std::ostream & </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a3a807457e27c47a1f9df50e693f09820">operator<<</a> (std::ostream &os, const <a class="el" href="structOpenMS_1_1PrecisionWrapper.html">PrecisionWrapper</a>< FloatingPointType > &rhs)</td></tr>
<tr class="memdesc:a3a807457e27c47a1f9df50e693f09820"><td class="mdescLeft"> </td><td class="mdescRight">Output operator for a <a class="el" href="structOpenMS_1_1PrecisionWrapper.html" title="Wrapper class to implement output with appropriate precision. See precisionWrapper(). ">PrecisionWrapper</a>. Specializations are defined for float, double, long double. <a href="#a3a807457e27c47a1f9df50e693f09820">More...</a><br/></td></tr>
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="var-members"></a>
Variables</h2></td></tr>
<tr class="memitem:a5085c82007a86521101d48755e67d911"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Logger_1_1LogStream.html">Logger::LogStream</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a5085c82007a86521101d48755e67d911">Log_fatal</a></td></tr>
<tr class="memdesc:a5085c82007a86521101d48755e67d911"><td class="mdescLeft"> </td><td class="mdescRight">Global static instance of a LogStream to capture messages classified as fatal errors. By default it is bound to <b>cerr</b>. <a href="#a5085c82007a86521101d48755e67d911">More...</a><br/></td></tr>
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<tr class="memitem:a15dbec2ae5286b1339525e87ba0bb83b"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Logger_1_1LogStream.html">Logger::LogStream</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a15dbec2ae5286b1339525e87ba0bb83b">Log_error</a></td></tr>
<tr class="memdesc:a15dbec2ae5286b1339525e87ba0bb83b"><td class="mdescLeft"> </td><td class="mdescRight">Global static instance of a LogStream to capture messages classified as errors. By default it is bound to <b>cerr</b>. <a href="#a15dbec2ae5286b1339525e87ba0bb83b">More...</a><br/></td></tr>
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<tr class="memitem:ae7a548e7b5e49f9e3fbdfaf20e3f46eb"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Logger_1_1LogStream.html">Logger::LogStream</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#ae7a548e7b5e49f9e3fbdfaf20e3f46eb">Log_warn</a></td></tr>
<tr class="memdesc:ae7a548e7b5e49f9e3fbdfaf20e3f46eb"><td class="mdescLeft"> </td><td class="mdescRight">Global static instance of a LogStream to capture messages classified as warnings. By default it is bound to <b>cout</b>. <a href="#ae7a548e7b5e49f9e3fbdfaf20e3f46eb">More...</a><br/></td></tr>
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<tr class="memitem:a033e094afdc56769b551dfd353a7c5f4"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Logger_1_1LogStream.html">Logger::LogStream</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a033e094afdc56769b551dfd353a7c5f4">Log_info</a></td></tr>
<tr class="memdesc:a033e094afdc56769b551dfd353a7c5f4"><td class="mdescLeft"> </td><td class="mdescRight">Global static instance of a LogStream to capture messages classified as information. By default it is bound to <b>cout</b>. <a href="#a033e094afdc56769b551dfd353a7c5f4">More...</a><br/></td></tr>
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<tr class="memitem:a37f73135da19f7f69b04910b53b515be"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1Logger_1_1LogStream.html">Logger::LogStream</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a37f73135da19f7f69b04910b53b515be">Log_debug</a></td></tr>
<tr class="memdesc:a37f73135da19f7f69b04910b53b515be"><td class="mdescLeft"> </td><td class="mdescRight">Global static instance of a LogStream to capture messages classified as debug output. By default it is not bound to any output stream. <a href="#a37f73135da19f7f69b04910b53b515be">More...</a><br/></td></tr>
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<tr class="memitem:a52dac5afaa05541aeeb66da50a89e078"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1StreamHandler.html">StreamHandler</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS.html#a52dac5afaa05541aeeb66da50a89e078">STREAM_HANDLER</a></td></tr>
<tr class="memdesc:a52dac5afaa05541aeeb66da50a89e078"><td class="mdescLeft"> </td><td class="mdescRight">Global <a class="el" href="classOpenMS_1_1StreamHandler.html" title="Provides a central class to register globally used output streams. Currently supported streams are...">StreamHandler</a> instance. <a href="#a52dac5afaa05541aeeb66da50a89e078">More...</a><br/></td></tr>
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>Main OpenMS namespace. </p>
<p>In this namespace all the main OpenMS classes are located. </p>
</div><h2 class="groupheader">Typedef Documentation</h2>
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<td class="memname">typedef std::multimap<int, <a class="el" href="classOpenMS_1_1MSPeak.html">MSPeak</a>> <a class="el" href="namespaceOpenMS.html#af18558f60329d153e5f439e6b6cbc6fa">elution_peak</a></td>
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<td class="memname">typedef std::map<int, <a class="el" href="classOpenMS_1_1LCElutionPeak.html">LCElutionPeak</a>> <a class="el" href="namespaceOpenMS.html#a4f92a8b7b3b84bb5f0b687b1ddcb8680">elution_peak_list</a></td>
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<td class="memname">typedef std::map<int, <a class="el" href="classOpenMS_1_1LCElutionPeak.html">LCElutionPeak</a>>::iterator <a class="el" href="namespaceOpenMS.html#a16b9767ab947be73b33cfcaf82cb6ec2">elution_peak_list_ITERATOR</a></td>
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<td class="memname">typedef <a class="el" href="classOpenMS_1_1FeatureMap.html">FeatureMap</a> <a class="el" href="namespaceOpenMS.html#a9396dc872898d760f035465bc56585d8">FeatureMapSim</a></td>
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<p>Sim <a class="el" href="classOpenMS_1_1FeatureMap.html" title="A container for features. ">FeatureMap</a>. </p>
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<td class="memname">typedef std::vector<<a class="el" href="namespaceOpenMS.html#a9396dc872898d760f035465bc56585d8">FeatureMapSim</a>> <a class="el" href="namespaceOpenMS.html#a5377a8d620ef376a0b1eb2503b847e79">FeatureMapSimVector</a></td>
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<p>Sim <a class="el" href="classOpenMS_1_1FeatureMap.html" title="A container for features. ">FeatureMap</a> Vector. </p>
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<td class="memname">typedef <a class="el" href="classOpenMS_1_1MSExperiment.html">MSExperiment</a><<a class="el" href="namespaceOpenMS.html#ade9515c83ff4c03f40e7465d159daa67">SimPointType</a>> <a class="el" href="namespaceOpenMS.html#ad8fab082e8d37c2f39ca13d92608d71d">MSSimExperiment</a></td>
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<p>Sim <a class="el" href="classOpenMS_1_1MSExperiment.html" title="Representation of a mass spectrometry experiment. ">MSExperiment</a> type. </p>
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<td class="memname">typedef std::map<<a class="el" href="classdouble.html">double</a>, <a class="el" href="namespaceOpenMS.html#a4f92a8b7b3b84bb5f0b687b1ddcb8680">elution_peak_list</a>> <a class="el" href="namespaceOpenMS.html#a1bff9fc323674bfd92b93ff627e1efec">MZ_LIST</a></td>
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<td class="memname">typedef MZ_LIST::iterator <a class="el" href="namespaceOpenMS.html#a63ab31d0a2bd812d4649e71a3a83c67a">MZ_LIST_ITERATOR</a></td>
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<td class="memname">typedef std::vector<<a class="el" href="namespaceOpenMS.html#af18558f60329d153e5f439e6b6cbc6fa">elution_peak</a>> <a class="el" href="namespaceOpenMS.html#ab69ab1a8bcf64e4e36a57672502f93dc">MZ_series</a></td>
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<td class="memname">typedef std::vector<<a class="el" href="namespaceOpenMS.html#af18558f60329d153e5f439e6b6cbc6fa">elution_peak</a>>::iterator <a class="el" href="namespaceOpenMS.html#a79e6b2973636a97ad0228a737ddcbed6">MZ_series_ITERATOR</a></td>
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<td class="memname">typedef std::map<<a class="el" href="classOpenMS_1_1String.html">String</a>, <a class="el" href="structOpenMS_1_1MzTabUnitIdMetaData.html">MzTabUnitIdMetaData</a>> <a class="el" href="namespaceOpenMS.html#ab138037234b4e184fcff64484bebc524">MzTabMetaData</a></td>
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<td class="memname">typedef std::pair<<a class="el" href="classOpenMS_1_1String.html">String</a>, <a class="el" href="classOpenMS_1_1MzTabString.html">MzTabString</a>> <a class="el" href="namespaceOpenMS.html#ac681a091df99c585b08e2a0ec9dd947e">MzTabOptionalColumnEntry</a></td>
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<td class="memname">typedef std::map<<a class="el" href="classOpenMS_1_1String.html">String</a>, <a class="el" href="namespaceOpenMS.html#a7175e41aff13b9e0fdcd0263b3168dd4">MzTabPeptideSectionRows</a>> <a class="el" href="namespaceOpenMS.html#abc4a193a549ea954836412f491fa9ad7">MzTabPeptideSectionData</a></td>
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<td class="memname">typedef std::vector<<a class="el" href="structOpenMS_1_1MzTabPeptideSectionRow.html">MzTabPeptideSectionRow</a>> <a class="el" href="namespaceOpenMS.html#a7175e41aff13b9e0fdcd0263b3168dd4">MzTabPeptideSectionRows</a></td>
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<td class="memname">typedef std::map<<a class="el" href="classOpenMS_1_1String.html">String</a>, <a class="el" href="namespaceOpenMS.html#a363e49ff9e8b2360fe2c5ea713174f9a">MzTabProteinSectionRows</a>> <a class="el" href="namespaceOpenMS.html#a9f87de27dc814e7f89bcd4fce45f9a03">MzTabProteinSectionData</a></td>
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<td class="memname">typedef std::vector<<a class="el" href="structOpenMS_1_1MzTabProteinSectionRow.html">MzTabProteinSectionRow</a>> <a class="el" href="namespaceOpenMS.html#a363e49ff9e8b2360fe2c5ea713174f9a">MzTabProteinSectionRows</a></td>
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<td class="memname">typedef std::map<<a class="el" href="classOpenMS_1_1String.html">String</a>, <a class="el" href="namespaceOpenMS.html#ae00d564626c32fae4110f1a1a4744484">MzTabSmallMoleculeSectionRows</a>> <a class="el" href="namespaceOpenMS.html#a5e9cf9a9228d42860755a3bf685b0222">MzTabSmallMoleculeSectionData</a></td>
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<td class="memname">typedef std::vector<<a class="el" href="structOpenMS_1_1MzTabSmallMoleculeSectionRow.html">MzTabSmallMoleculeSectionRow</a>> <a class="el" href="namespaceOpenMS.html#ae00d564626c32fae4110f1a1a4744484">MzTabSmallMoleculeSectionRows</a></td>
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<td class="memname">typedef <a class="el" href="classOpenMS_1_1Peak2D.html">Peak2D</a> <a class="el" href="namespaceOpenMS.html#a013338b7bdbb5c3b4c78666656070e23">PeakType</a></td>
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<td class="memname">typedef std::multimap<int, <a class="el" href="classOpenMS_1_1MSPeak.html">MSPeak</a>>::iterator <a class="el" href="namespaceOpenMS.html#a86f33425d6d3c820cf964cacc9a3fd34">SIGNAL_iterator</a></td>
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<td class="memname">typedef <a class="el" href="classOpenMS_1_1BaseFeature.html#a87171116869a9f9511d7ce9ad7baf5d6">Feature::ChargeType</a> <a class="el" href="namespaceOpenMS.html#aeeb197e95f7bd1ada2cca075468bab8f">SimChargeType</a></td>
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<p>Charge of a peptide. </p>
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<td class="memname">typedef <a class="el" href="classOpenMS_1_1Peak2D.html#a063d40a3528749f1a905ab04d76387e0">Peak2D::CoordinateType</a> <a class="el" href="namespaceOpenMS.html#a375f999020e3ba21026a3f0be0c079f6">SimCoordinateType</a></td>
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<p>Coordinate type in mz and rt dimension. </p>
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<td class="memname">typedef <a class="el" href="classOpenMS_1_1Peak2D.html#a4a8c5b2adc05e9ff96a007385bfe9b47">Peak2D::IntensityType</a> <a class="el" href="namespaceOpenMS.html#a1c6dc92dcdd8dd005518ab11d341ae5f">SimIntensityType</a></td>
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<p>Abundance of proteins/peptides. </p>
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<td class="memname">typedef <a class="el" href="classOpenMS_1_1Peak1D.html">Peak1D</a> <a class="el" href="namespaceOpenMS.html#ade9515c83ff4c03f40e7465d159daa67">SimPointType</a></td>
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<p>Raw data point. </p>
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<td class="memname">typedef <a class="el" href="classOpenMS_1_1Map.html">Map</a><<a class="el" href="classOpenMS_1_1String.html">String</a>, <a class="el" href="structOpenMS_1_1Internal_1_1ToolDescription.html">Internal::ToolDescription</a>> <a class="el" href="namespaceOpenMS.html#a0fdc9d00812f09849fe267d1471236b1">ToolListType</a></td>
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<p>Handles lists of TOPP and UTILS tools and their categories (for TOPPAS) </p>
<p>Path's were *.ttd files are searched for:</p>
<p>Default: The <a class="el" href="namespaceOpenMS.html" title="Main OpenMS namespace. ">OpenMS</a> share directory ([<a class="el" href="namespaceOpenMS.html" title="Main OpenMS namespace. ">OpenMS</a>]/share/TOOLS/EXTERNAL) OS specific directories</p>
<ul>
<li>[<a class="el" href="namespaceOpenMS.html" title="Main OpenMS namespace. ">OpenMS</a>]/share/TOOLS/EXTERNAL/LINUX (for Mac and Linux)</li>
<li>[<a class="el" href="namespaceOpenMS.html" title="Main OpenMS namespace. ">OpenMS</a>]/share/TOOLS/EXTERNAL/WINDOWS (for Windows) Environment: OPENMS_TTD_PATH (use only one path here!)map each TOPP/UTIL to its ToolDescription </li>
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<td class="memname">typedef <a class="el" href="classOpenMS_1_1Map.html">Map</a><<a class="el" href="structOpenMS_1_1Internal_1_1ToolDescriptionInternal.html">Internal::ToolDescriptionInternal</a>, <a class="el" href="structOpenMS_1_1Internal_1_1ToolDescriptionInternal.html">Internal::ToolDescriptionInternal</a>> <a class="el" href="namespaceOpenMS.html#a22d9f4fd105b0fa0fb23e988f8d150e0">ToolMapping</a></td>
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<p>Updates an INI. </p>
<p>map each old TOPP/UTIL to its new Name </p>
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<td class="memname">typedef std::vector<<a class="el" href="group__FeatureFinder.html#ga69e18760fc6f819a5a7d5bec62f1c44e">MyMap</a>> <a class="el" href="namespaceOpenMS.html#afc24cc74414bcf1d9129d3e8d4eb1a7f">Vec</a></td>
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<h2 class="groupheader">Enumeration Type Documentation</h2>
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<td class="memname">enum <a class="el" href="namespaceOpenMS.html#a3adeced4cb527e033cb4945e71780235">ASCII</a></td>
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<tr><th colspan="2">Enumerator</th></tr><tr><td class="fieldname"><em><a class="anchor" id="a3adeced4cb527e033cb4945e71780235a383301a5c7829cf8c0d81fdd735b3dcb"></a>ASCII__BACKSPACE</em> </td><td class="fielddoc">
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<tr><td class="fieldname"><em><a class="anchor" id="a3adeced4cb527e033cb4945e71780235a9e7a71fe169344c26483bea5ec8539c5"></a>ASCII__BELL</em> </td><td class="fielddoc">
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<tr><td class="fieldname"><em><a class="anchor" id="a3adeced4cb527e033cb4945e71780235ae786d7bc6e2bd1ddc803d54377234577"></a>ASCII__CARRIAGE_RETURN</em> </td><td class="fielddoc">
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<tr><td class="fieldname"><em><a class="anchor" id="a3adeced4cb527e033cb4945e71780235a357197fc61eadcd5673092b4f0ab427c"></a>ASCII__HORIZONTAL_TAB</em> </td><td class="fielddoc">
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<tr><td class="fieldname"><em><a class="anchor" id="a3adeced4cb527e033cb4945e71780235a65634050d9759a7f609e5b4c195ca893"></a>ASCII__NEWLINE</em> </td><td class="fielddoc">
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<tr><td class="fieldname"><em><a class="anchor" id="a3adeced4cb527e033cb4945e71780235a434a150907ade99d5a8ac0ac499194f2"></a>ASCII__RETURN</em> </td><td class="fielddoc">
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<tr><td class="fieldname"><em><a class="anchor" id="a3adeced4cb527e033cb4945e71780235ab4c91e970bffa34790db84e7b8f997c6"></a>ASCII__SPACE</em> </td><td class="fielddoc">
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<tr><td class="fieldname"><em><a class="anchor" id="a3adeced4cb527e033cb4945e71780235a8ba0246c6824e3e51cbd15d8d1ee158e"></a>ASCII__TAB</em> </td><td class="fielddoc">
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<tr><td class="fieldname"><em><a class="anchor" id="a3adeced4cb527e033cb4945e71780235af2250492a887a73bd7aa7c0dcdd019c4"></a>ASCII__VERTICAL_TAB</em> </td><td class="fielddoc">
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<tr><td class="fieldname"><em><a class="anchor" id="a3adeced4cb527e033cb4945e71780235a9a04a590f3cefa87ee4c89e614b7b635"></a>ASCII__COLON</em> </td><td class="fielddoc">
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<tr><td class="fieldname"><em><a class="anchor" id="a3adeced4cb527e033cb4945e71780235a8dbd431b112c24e32a068e4506b53bf4"></a>ASCII__COMMA</em> </td><td class="fielddoc">
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<tr><td class="fieldname"><em><a class="anchor" id="a3adeced4cb527e033cb4945e71780235a0f85913ca83c4860f776c9fc1c9641a1"></a>ASCII__EXCLAMATION_MARK</em> </td><td class="fielddoc">
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<tr><td class="fieldname"><em><a class="anchor" id="a3adeced4cb527e033cb4945e71780235ad4e5750fdedb2e000868bef916830f80"></a>ASCII__POINT</em> </td><td class="fielddoc">
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<tr><td class="fieldname"><em><a class="anchor" id="a3adeced4cb527e033cb4945e71780235add63f1ebb8145d202e9da6fd63c89793"></a>ASCII__QUESTION_MARK</em> </td><td class="fielddoc">
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<tr><td class="fieldname"><em><a class="anchor" id="a3adeced4cb527e033cb4945e71780235a6dd7e64a95d27b6551f5ffc5963624f9"></a>ASCII__SEMICOLON</em> </td><td class="fielddoc">
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<h2 class="groupheader">Function Documentation</h2>
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<td class="memname"><a class="el" href="classOpenMS_1_1BinaryComposeFunctionAdapter.html">BinaryComposeFunctionAdapter</a><OP1, OP2, OP3> OpenMS::binaryCompose </td>
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<td class="paramtype">const OP1 & </td>
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<p>Convenience function for the <code><a class="el" href="classOpenMS_1_1BinaryComposeFunctionAdapter.html" title="Represents the binary compose function object adapter. ">BinaryComposeFunctionAdapter</a></code> adapter. </p>
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<td class="memname">int OpenMS::checkCUDAError </td>
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<td class="paramtype">const char * </td>
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<td class="memname">bool OpenMS::compareBinaryTreeNode </td>
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<td class="paramtype">const BinaryTreeNode & </td>
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<p>returns the value of (x.distance < y.distance) for use with sort </p>
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<td class="memname">void OpenMS::deriveOnDevice </td>
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<td class="paramtype">float * </td>
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<td class="paramtype">float * </td>
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<td class="paramtype">const int </td>
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<td class="memname">bool OpenMS::enclosesBoundingBox </td>
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<td class="paramtype">typename MSExperiment< InputPeakType >::<a class="el" href="AdditiveSeries_8C.html#a75145a9f1f2689d0f54565ffbdb1f5d6">CoordinateType</a> </td>
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<td class="paramname"><em>mz</em> </td>
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<td>)</td>
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<p>References <a class="el" href="classOpenMS_1_1Feature.html#ad99bb8ba2103d6c52ee10ae6369b46e7">Feature::getConvexHulls()</a>.</p>
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<td class="memname"><a class="el" href="group__Concept.html#ga819125d1a012286826064bf22d5ef41e">Int32</a> OpenMS::endianize32 </td>
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<td class="paramname"><em>n</em></td><td>)</td>
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<p>Endianizes a 32 bit type from big endian to little endian and vice versa. </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1Base64.html#a47a05b615383cfc762d4b17f12a46297">Base64::decodeCompressed_()</a>, <a class="el" href="classOpenMS_1_1Base64.html#a2b707a2f7ae9f34e2c5fd4a157a42e80">Base64::decodeIntegersCompressed_()</a>, <a class="el" href="classOpenMS_1_1Base64.html#ac70a32569b52ad3f7f462ca6c03d723a">Base64::encode()</a>, and <a class="el" href="classOpenMS_1_1Base64.html#af39e7978ec8ba7380daa8419d351aecf">Base64::encodeIntegers()</a>.</p>
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<td class="memname"><a class="el" href="group__Concept.html#ga84f5fc936107ae0a002c345694c41dcd">Int64</a> OpenMS::endianize64 </td>
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<p>Endianizes a 64 bit type from big endian to little endian and vice versa. </p>
<p>Referenced by <a class="el" href="classOpenMS_1_1Base64.html#a47a05b615383cfc762d4b17f12a46297">Base64::decodeCompressed_()</a>, <a class="el" href="classOpenMS_1_1Base64.html#a2b707a2f7ae9f34e2c5fd4a157a42e80">Base64::decodeIntegersCompressed_()</a>, <a class="el" href="classOpenMS_1_1Base64.html#ac70a32569b52ad3f7f462ca6c03d723a">Base64::encode()</a>, and <a class="el" href="classOpenMS_1_1Base64.html#af39e7978ec8ba7380daa8419d351aecf">Base64::encodeIntegers()</a>.</p>
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<td class="memname">void OpenMS::getExternalCudaTransforms </td>
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<td class="paramtype">dim3 </td>
<td class="paramname"><em>dimGrid</em>, </td>
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<td class="paramtype">dim3 </td>
<td class="paramname"><em>dimBlock</em>, </td>
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<td class="paramkey"></td>
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<td class="paramtype">float * </td>
<td class="paramname"><em>positions_dev</em>, </td>
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<td class="paramtype">float * </td>
<td class="paramname"><em>intensities_dev</em>, </td>
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<td class="paramtype">int </td>
<td class="paramname"><em>from_max_to_left</em>, </td>
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<td class="paramtype">int </td>
<td class="paramname"><em>from_max_to_right</em>, </td>
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<td class="paramtype">float * </td>
<td class="paramname"><em>result_dev</em>, </td>
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<td class="paramtype">const int </td>
<td class="paramname"><em>charge</em>, </td>
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<td class="paramtype">const int </td>
<td class="paramname"><em>to_load</em>, </td>
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<td class="paramtype">const int </td>
<td class="paramname"><em>to_compute</em>, </td>
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<td class="paramtype">const int </td>
<td class="paramname"><em>size</em>, </td>
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<td class="paramtype">float * </td>
<td class="paramname"><em>fwd2</em>, </td>
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<td class="paramtype">bool </td>
<td class="paramname"><em>highres</em> = <code>false</code> </td>
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<td class="memname">std::size_t OpenMS::hash_value </td>
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<td class="paramtype">const DPosition< N, T > & </td>
<td class="paramname"><em>b</em></td><td>)</td>
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<p>Hash value for <a class="el" href="classOpenMS_1_1DPosition.html" title="Representation of a coordinate in D-dimensional space. ">OpenMS::DPosition</a>. </p>
<p>References <a class="el" href="classOpenMS_1_1DPosition.html#aeb8a08dab209e7d8bd94ea796e8055e7">DPosition< D, TCoordinateType >::begin()</a>, and <a class="el" href="classOpenMS_1_1DPosition.html#afd94c820b193c151ddbaae99185a24f4">DPosition< D, TCoordinateType >::end()</a>.</p>
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<td class="memname">bool OpenMS::intensityAscendingComparator </td>
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<td class="paramtype">const PeakType & </td>
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<td class="paramtype">const PeakType & </td>
<td class="paramname"><em>b</em> </td>
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<p>References <a class="el" href="classOpenMS_1_1Peak2D.html#a09903c7965f8ece31f2c1e07b41ae6dd">Peak2D::getIntensity()</a>.</p>
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<td class="memname">bool OpenMS::intensityComparator </td>
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<td class="paramtype">const PeakType & </td>
<td class="paramname"><em>a</em>, </td>
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<td class="paramtype">const PeakType & </td>
<td class="paramname"><em>b</em> </td>
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<p>References <a class="el" href="classOpenMS_1_1Peak2D.html#a09903c7965f8ece31f2c1e07b41ae6dd">Peak2D::getIntensity()</a>.</p>
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<td class="memname">bool OpenMS::intensityPointerComparator </td>
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<td class="paramtype">PeakType * </td>
<td class="paramname"><em>a</em>, </td>
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<td class="paramtype">PeakType * </td>
<td class="paramname"><em>b</em> </td>
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<p>References <a class="el" href="classOpenMS_1_1Peak2D.html#a09903c7965f8ece31f2c1e07b41ae6dd">Peak2D::getIntensity()</a>.</p>
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<td class="memname"><a class="el" href="structOpenMS_1_1LexicographicComparator.html">LexicographicComparator</a>< Cmp1, Cmp2 > lexicographicComparator </td>
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<td class="paramtype">Cmp1 const & </td>
<td class="paramname"><em>cmp1</em>, </td>
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<td class="paramtype">Cmp2 const & </td>
<td class="paramname"><em>cmp2</em> </td>
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<p>Make-function to create a <a class="el" href="structOpenMS_1_1LexicographicComparator.html" title="A wrapper class that combines two comparators lexicographically. Normally you should use the make-fun...">LexicographicComparator</a> from two other comparators without the need to specify the template arguments. </p>
<p>The usage is similar to <a class="el" href="namespaceOpenMS.html#aeb071107569224c672893cd945dff7fe" title="Make-function to create a PointerComparator from another comparator without the need to specify the t...">pointerComparator()</a> or <a class="el" href="namespaceOpenMS.html#a74e80d32be63268d8a46039297e18cc6" title="Make-function to create a ReverseComparator from another comparator without the need to specify the t...">reverseComparator()</a>, which see. </p>
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<td class="memname">bool OpenMS::myCudaComparator </td>
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<td class="paramtype">const cudaHelp & </td>
<td class="paramname"><em>a</em>, </td>
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<td class="paramkey"></td>
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<td class="paramtype">const cudaHelp & </td>
<td class="paramname"><em>b</em> </td>
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<td>)</td>
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<td class="memname"><a class="el" href="classOpenMS_1_1DPosition.html">DPosition</a><D, TCoordinateType> OpenMS::operator* </td>
<td>(</td>
<td class="paramtype">DPosition< D, TCoordinateType > </td>
<td class="paramname"><em>position</em>, </td>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">typename DPosition< D, TCoordinateType >::<a class="el" href="AdditiveSeries_8C.html#a75145a9f1f2689d0f54565ffbdb1f5d6">CoordinateType</a> </td>
<td class="paramname"><em>scalar</em> </td>
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<p>Scalar multiplication (a bit inefficient) </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1DPosition.html">DPosition</a><D, TCoordinateType> OpenMS::operator* </td>
<td>(</td>
<td class="paramtype">typename DPosition< D, TCoordinateType >::<a class="el" href="AdditiveSeries_8C.html#a75145a9f1f2689d0f54565ffbdb1f5d6">CoordinateType</a> </td>
<td class="paramname"><em>scalar</em>, </td>
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<td class="paramtype">DPosition< D, TCoordinateType > </td>
<td class="paramname"><em>position</em> </td>
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<p>Scalar multiplication (a bit inefficient) </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1DPosition.html">DPosition</a><D, TCoordinateType> OpenMS::operator/ </td>
<td>(</td>
<td class="paramtype">DPosition< D, TCoordinateType > </td>
<td class="paramname"><em>position</em>, </td>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">typename DPosition< D, TCoordinateType >::<a class="el" href="AdditiveSeries_8C.html#a75145a9f1f2689d0f54565ffbdb1f5d6">CoordinateType</a> </td>
<td class="paramname"><em>scalar</em> </td>
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<p>Scalar multiplication (a bit inefficient) </p>
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<td class="memname">std::ostream& OpenMS::operator<< </td>
<td>(</td>
<td class="paramtype">std::ostream & </td>
<td class="paramname"><em>out</em>, </td>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">RawData & </td>
<td class="paramname"><em>data</em> </td>
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<td class="memname">std::ostream& OpenMS::operator<< </td>
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<td class="paramtype">std::ostream & </td>
<td class="paramname"><em>os</em>, </td>
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<td class="paramtype">const AnnotationStatistics & </td>
<td class="paramname"><em>ann</em> </td>
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<td>)</td>
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<p>Print content of an <a class="el" href="structOpenMS_1_1AnnotationStatistics.html">AnnotationStatistics</a> object to a stream. </p>
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<td class="memname">std::ostream& OpenMS::operator<< </td>
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<td class="paramtype">std::ostream & </td>
<td class="paramname">, </td>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">Deisotoper & </td>
<td class="paramname"> </td>
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<td>)</td>
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<td class="paramname">, </td>
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<td></td>
<td class="paramtype">CentroidData & </td>
<td class="paramname"> </td>
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<td></td>
<td>)</td>
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<td class="memname">std::ostream& OpenMS::operator<< </td>
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<td class="paramname"><em>os</em>, </td>
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<td></td>
<td class="paramtype">const ExperimentalSettings & </td>
<td class="paramname"><em>exp</em> </td>
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<td></td>
<td>)</td>
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<p>Print the contents to a stream. </p>
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<td class="memname">std::ostream& OpenMS::operator<< </td>
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<td class="paramtype">std::ostream & </td>
<td class="paramname">, </td>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">CentroidPeak & </td>
<td class="paramname"> </td>
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<td>)</td>
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<td class="paramtype">DeconvPeak & </td>
<td class="paramname"> </td>
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<td class="paramtype">const Element & </td>
<td class="paramname"> </td>
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<td class="paramtype">const ItraqQuantifier::ItraqQuantifierStats & </td>
<td class="paramname"><em>stats</em> </td>
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<p>Referenced by <a class="el" href="classOpenMS_1_1SVOutStream.html#ab255b8ec3e71a0b60073b1f61cc6f28b">SVOutStream::writeValueOrNan()</a>.</p>
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<td class="paramtype">StreamHandler const & </td>
<td class="paramname"><em>stream_handler</em> </td>
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<p>Overload for the <em>insertion</em> <em>operator</em> (operator<<) to have a formated output of the <a class="el" href="classOpenMS_1_1StreamHandler.html" title="Provides a central class to register globally used output streams. Currently supported streams are...">StreamHandler</a>. </p>
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<td class="paramtype">const ChromatogramSettings & </td>
<td class="paramname"><em>spec</em> </td>
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<p>Print the contents to a stream. </p>
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<td class="paramtype">const SpectrumSettings & </td>
<td class="paramname"><em>spec</em> </td>
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<td class="paramtype">const ControlledVocabulary & </td>
<td class="paramname"><em>cv</em> </td>
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<p>Print the contents to a stream. </p>
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<td></td>
<td class="paramtype">LogConfigHandler const & </td>
<td class="paramname"><em>lch</em> </td>
</tr>
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<td></td>
<td>)</td>
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<p>Overload for the <em>insertion</em> <em>operator</em> (operator<<) to have a formated output of the <a class="el" href="classOpenMS_1_1LogConfigHandler.html" title="The LogConfigHandler provides the functionality to configure the internal logging of OpenMS algorithm...">LogConfigHandler</a>. </p>
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<td class="paramtype">std::ostream & </td>
<td class="paramname"><em>os</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const DBoundingBox< D > & </td>
<td class="paramname"><em>bounding_box</em> </td>
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<td></td>
<td>)</td>
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<p>Print the contents to a stream. </p>
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<td class="memname">std::ostream& OpenMS::operator<< </td>
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<td class="paramtype">std::ostream & </td>
<td class="paramname"><em>os</em>, </td>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">const FeatureHandle & </td>
<td class="paramname"><em>cons</em> </td>
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<td></td>
<td>)</td>
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<p>Print the contents of a <a class="el" href="classOpenMS_1_1FeatureHandle.html" title="Representation of a Peak2D, RichPeak2D or Feature . ">FeatureHandle</a> to a stream. </p>
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<td class="memname">std::ostream& OpenMS::operator<< </td>
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<td class="paramtype">std::ostream & </td>
<td class="paramname"><em>os</em>, </td>
</tr>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">const ChargePair & </td>
<td class="paramname"><em>cons</em> </td>
</tr>
<tr>
<td></td>
<td>)</td>
<td></td><td></td>
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<p>Print the contents of a <a class="el" href="classOpenMS_1_1ChargePair.html" title="Representation of a (putative) link between two Features, which stem from the same compound but have ...">ChargePair</a> to a stream. </p>
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<td class="paramtype">std::ostream & </td>
<td class="paramname"><em>os</em>, </td>
</tr>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">const Peak1D & </td>
<td class="paramname"><em>point</em> </td>
</tr>
<tr>
<td></td>
<td>)</td>
<td></td><td></td>
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<p>Print the contents to a stream. </p>
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<td class="memname">std::ostream& OpenMS::operator<< </td>
<td>(</td>
<td class="paramtype">std::ostream & </td>
<td class="paramname"><em>os</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const EmpiricalFormula & </td>
<td class="paramname"><em>formula</em> </td>
</tr>
<tr>
<td></td>
<td>)</td>
<td></td><td></td>
</tr>
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<td class="memname">std::ostream& OpenMS::operator<< </td>
<td>(</td>
<td class="paramtype">std::ostream & </td>
<td class="paramname"><em>os</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const ChromatogramPeak & </td>
<td class="paramname"><em>point</em> </td>
</tr>
<tr>
<td></td>
<td>)</td>
<td></td><td></td>
</tr>
</table>
</div><div class="memdoc">
<p>Print the contents to a stream. </p>
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<td class="mlabels-left">
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<tr>
<td class="memname">std::ostream& OpenMS::operator<< </td>
<td>(</td>
<td class="paramtype">std::ostream & </td>
<td class="paramname"><em>os</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const PSLPFormulation::IndexTriple & </td>
<td class="paramname"><em>triple</em> </td>
</tr>
<tr>
<td></td>
<td>)</td>
<td></td><td></td>
</tr>
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<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">inline</span></span> </td>
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<p>References <a class="el" href="structOpenMS_1_1PSLPFormulation_1_1IndexTriple.html#a2b11212b5257b0c9f05b5d36f266dd67">PSLPFormulation::IndexTriple::feature</a>, <a class="el" href="structOpenMS_1_1PSLPFormulation_1_1IndexTriple.html#a24b2e6838da320481d4725b945c06e1f">PSLPFormulation::IndexTriple::prot_acc</a>, <a class="el" href="structOpenMS_1_1PSLPFormulation_1_1IndexTriple.html#a70e4788ce6e5dd2fb7780bc492db20d5">PSLPFormulation::IndexTriple::scan</a>, and <a class="el" href="structOpenMS_1_1PSLPFormulation_1_1IndexTriple.html#ac8ce2b86c4cf3b7dc5e9961155e21f92">PSLPFormulation::IndexTriple::variable</a>.</p>
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<td class="memname">std::ostream& OpenMS::operator<< </td>
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<td class="paramtype">std::ostream & </td>
<td class="paramname"><em>os</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const DRange< D > & </td>
<td class="paramname"><em>area</em> </td>
</tr>
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<td></td>
<td>)</td>
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<p>Print the contents to a stream. </p>
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<td class="paramtype">std::ostream & </td>
<td class="paramname"><em>os</em>, </td>
</tr>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">const LayerData & </td>
<td class="paramname"><em>rhs</em> </td>
</tr>
<tr>
<td></td>
<td>)</td>
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<p>Print the contents to a stream. </p>
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<td class="memname">std::ostream& OpenMS::operator<< </td>
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<td class="paramtype">std::ostream & </td>
<td class="paramname"><em>os</em>, </td>
</tr>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">const ConsensusFeature & </td>
<td class="paramname"><em>cons</em> </td>
</tr>
<tr>
<td></td>
<td>)</td>
<td></td><td></td>
</tr>
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<p>Print the contents of a <a class="el" href="classOpenMS_1_1ConsensusFeature.html" title="A 2-dimensional consensus feature. ">ConsensusFeature</a> to a stream. </p>
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<td class="memname">std::ostream& OpenMS::operator<< </td>
<td>(</td>
<td class="paramtype">std::ostream & </td>
<td class="paramname"><em>os</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const Peak2D & </td>
<td class="paramname"><em>point</em> </td>
</tr>
<tr>
<td></td>
<td>)</td>
<td></td><td></td>
</tr>
</table>
</div><div class="memdoc">
<p>Print the contents to a stream. </p>
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<td class="memname">std::ostream& OpenMS::operator<< </td>
<td>(</td>
<td class="paramtype">std::ostream & </td>
<td class="paramname"><em>os</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const PrecisionWrapper< FloatingPointType > & </td>
<td class="paramname"><em>rhs</em> </td>
</tr>
<tr>
<td></td>
<td>)</td>
<td></td><td></td>
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<p>Output operator for a <a class="el" href="structOpenMS_1_1PrecisionWrapper.html" title="Wrapper class to implement output with appropriate precision. See precisionWrapper(). ">PrecisionWrapper</a>. Specializations are defined for float, double, long double. </p>
<p>References <a class="el" href="structOpenMS_1_1PrecisionWrapper.html#a99c5de27ecd7952a2587fe6d069d515c">PrecisionWrapper< FloatingPointType >::ref_</a>, and <a class="el" href="namespaceOpenMS.html#aea04da6adf64cf9ebd7ad8b4f2dc864e">writtenDigits()</a>.</p>
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<td class="memname">std::ostream & operator<< </td>
<td>(</td>
<td class="paramtype">std::ostream & </td>
<td class="paramname"><em>os</em>, </td>
</tr>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">const Matrix< Value > & </td>
<td class="paramname"><em>matrix</em> </td>
</tr>
<tr>
<td></td>
<td>)</td>
<td></td><td></td>
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<p>Print the contents to a stream. </p>
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<td class="memname">std::ostream& OpenMS::operator<< </td>
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<td class="paramname"><em>os</em>, </td>
</tr>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">const DPosition< D, TCoordinateType > & </td>
<td class="paramname"><em>pos</em> </td>
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<td></td>
<td>)</td>
<td></td><td></td>
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<p>Print the contents to a stream. </p>
<p>References <a class="el" href="namespaceOpenMS.html#af27ce8637a6a7cc24cc6fcbd3358791d">precisionWrapper()</a>.</p>
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<td class="memname">std::ostream & operator<< </td>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">const DistanceMatrix< Value > & </td>
<td class="paramname"><em>matrix</em> </td>
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<p>Print the contents to a stream. </p>
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<td class="memname">std::ostream& OpenMS::operator<< </td>
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<td class="paramname"><em>os</em>, </td>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">const ConsensusMap & </td>
<td class="paramname"><em>cons_map</em> </td>
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<td></td>
<td>)</td>
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<p>Print the contents of a <a class="el" href="classOpenMS_1_1ConsensusMap.html" title="A container for consensus elements. ">ConsensusMap</a> to a stream. </p>
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<td class="memname">std::ostream& OpenMS::operator<< </td>
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<td class="paramname"><em>os</em>, </td>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">const FeatureMap< FeatureType > & </td>
<td class="paramname"><em>map</em> </td>
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<p>Print content of a feature map to a stream. </p>
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<td class="memname">std::ostream& OpenMS::operator<< </td>
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<td class="paramname"><em>os</em>, </td>
</tr>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">const AASequence & </td>
<td class="paramname"><em>peptide</em> </td>
</tr>
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<td></td>
<td>)</td>
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<td class="memname">std::ostream& OpenMS::operator<< </td>
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<td class="paramtype">std::ostream & </td>
<td class="paramname"><em>os</em>, </td>
</tr>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">const Param & </td>
<td class="paramname"><em>param</em> </td>
</tr>
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<td></td>
<td>)</td>
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<p>Output of <a class="el" href="classOpenMS_1_1Param.html" title="Management and storage of parameters / INI files. ">Param</a> to a stream. </p>
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<td></td>
<td class="paramtype">const MSChromatogram< <a class="el" href="classPeakT.html">PeakT</a> > & </td>
<td class="paramname"><em>spec</em> </td>
</tr>
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<p>Print the contents to a stream. </p>
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<td class="memname">std::ostream& OpenMS::operator<< </td>
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<td class="paramname"><em>os</em>, </td>
</tr>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">const MSSpectrum< <a class="el" href="classPeakT.html">PeakT</a> > & </td>
<td class="paramname"><em>spec</em> </td>
</tr>
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<p>Print the contents to a stream. </p>
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<td></td>
<td class="paramtype">const Residue & </td>
<td class="paramname"><em>residue</em> </td>
</tr>
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<td></td>
<td>)</td>
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<td class="memname">std::ostream& OpenMS::operator<< </td>
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<td class="paramname"><em>os</em>, </td>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">const MSExperiment< <a class="el" href="classPeakT.html">PeakT</a>, ChromatogramPeakT > & </td>
<td class="paramname"><em>exp</em> </td>
</tr>
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<td class="memname">std::istream& OpenMS::operator>> </td>
<td>(</td>
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<td class="paramname"><em>os</em>, </td>
</tr>
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<td></td>
<td class="paramtype">const AASequence & </td>
<td class="paramname"><em>peptide</em> </td>
</tr>
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<td>)</td>
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<td class="memname"><a class="el" href="structOpenMS_1_1PointerComparator.html">PointerComparator</a>< Cmp > pointerComparator </td>
<td>(</td>
<td class="paramtype">Cmp const & </td>
<td class="paramname"><em>cmp</em></td><td>)</td>
<td></td>
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<p>Make-function to create a <a class="el" href="structOpenMS_1_1PointerComparator.html" title="Wrapper that takes a comparator for `something' and makes a comparator for pointers to `something' ou...">PointerComparator</a> from another comparator without the need to specify the template arguments. </p>
<p>For example, </p>
<pre>
int i = 88, j = 99;
if ( pointerComparator(std::less<int>())(&i,&j) )
{
  // yes, 88 < 99.
}
</pre>
<p>Referenced by <a class="el" href="classOpenMS_1_1ConstRefVector.html#a90038ea4a6900fd26d4d69717294551b">ConstRefVector< ContainerT >::sortByComparator()</a>, <a class="el" href="classOpenMS_1_1ConstRefVector.html#a93f1c9f620403aec160d98e83e125502">ConstRefVector< ContainerT >::sortByIntensity()</a>, and <a class="el" href="classOpenMS_1_1ConstRefVector.html#a86f7b200260209865e730a2e4fcaa628">ConstRefVector< ContainerT >::sortByPosition()</a>.</p>
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<td class="memname">bool OpenMS::positionComparator </td>
<td>(</td>
<td class="paramtype">const PeakType & </td>
<td class="paramname"><em>a</em>, </td>
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<td class="paramkey"></td>
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<td class="paramtype">const PeakType & </td>
<td class="paramname"><em>b</em> </td>
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<td></td>
<td>)</td>
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<p>References <a class="el" href="classOpenMS_1_1Peak2D.html#a6fefef82aae7a3208e71648e763d5ea4">Peak2D::getMZ()</a>.</p>
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<td class="memname">const <a class="el" href="structOpenMS_1_1PrecisionWrapper.html">PrecisionWrapper</a><FloatingPointType> OpenMS::precisionWrapper </td>
<td>(</td>
<td class="paramtype">const FloatingPointType </td>
<td class="paramname"><em>rhs</em></td><td>)</td>
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<p>Wrapper function that sets the appropriate precision for output temporarily. The original precision is restored afterwards so that no side effects remain. This is a "make"-function that deduces the typename FloatingPointType from its argument and returns a PrecisionWrapper<FloatingPointType>. </p>
<p>Example: </p>
<div class="fragment"><div class="line">std::cout</div>
<div class="line"><< 0.1234567890123456789f << <span class="charliteral">' '</span> << 0.1234567890123456789 << <span class="charliteral">' '</span> << 0.1234567890123456789l << <span class="charliteral">'\n'</span></div>
<div class="line"><< <a class="code" href="namespaceOpenMS.html#af27ce8637a6a7cc24cc6fcbd3358791d">precisionWrapper</a>(0.1234567890123456789f) << <span class="charliteral">'\n'</span> <span class="comment">// float</span></div>
<div class="line"><< 0.1234567890123456789f << <span class="charliteral">' '</span> << 0.1234567890123456789 << <span class="charliteral">' '</span> << 0.1234567890123456789l << <span class="charliteral">'\n'</span></div>
<div class="line"><< <a class="code" href="namespaceOpenMS.html#af27ce8637a6a7cc24cc6fcbd3358791d">precisionWrapper</a>(0.1234567890123456789) << <span class="charliteral">'\n'</span> <span class="comment">// double</span></div>
<div class="line"><< 0.1234567890123456789f << <span class="charliteral">' '</span> << 0.1234567890123456789 << <span class="charliteral">' '</span> << 0.1234567890123456789l << <span class="charliteral">'\n'</span></div>
<div class="line"><< <a class="code" href="namespaceOpenMS.html#af27ce8637a6a7cc24cc6fcbd3358791d">precisionWrapper</a>(0.1234567890123456789l) << <span class="charliteral">'\n'</span> <span class="comment">// long double</span></div>
<div class="line"><< 0.1234567890123456789f << <span class="charliteral">' '</span> << 0.1234567890123456789 << <span class="charliteral">' '</span> << 0.1234567890123456789l << <span class="charliteral">'\n'</span>;</div>
</div><!-- fragment --><p> Result: </p>
<div class="fragment"><div class="line">0.123457 0.123457 0.123457</div>
<div class="line">0.123457</div>
<div class="line">0.123457 0.123457 0.123457</div>
<div class="line">0.123456789012346</div>
<div class="line">0.123457 0.123457 0.123457</div>
<div class="line">0.123456789012345679</div>
<div class="line">0.123457 0.123457 0.123457</div>
</div><!-- fragment --><p>Note: Unfortunately we cannot return a const& - this will change when rvalue references become part of the new C++ standard. In the meantime, we need a copy constructor for <a class="el" href="structOpenMS_1_1PrecisionWrapper.html" title="Wrapper class to implement output with appropriate precision. See precisionWrapper(). ">PrecisionWrapper</a>. </p>
<p>Referenced by <a class="el" href="namespaceOpenMS.html#a641a4eb6a407faea7361191a05c8e2e3">operator<<()</a>, <a class="el" href="classOpenMS_1_1DTA2DFile.html#adb795d215478320be7c6130ff7ddf853">DTA2DFile::store()</a>, and <a class="el" href="classOpenMS_1_1DTA2DFile.html#a4dc28e36e6da7b6618b255a4e1d82ded">DTA2DFile::storeTIC()</a>.</p>
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<td class="memname"><a class="el" href="structOpenMS_1_1ReverseComparator.html">ReverseComparator</a>< Cmp > reverseComparator </td>
<td>(</td>
<td class="paramtype">Cmp const & </td>
<td class="paramname"><em>cmp</em></td><td>)</td>
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<p>Make-function to create a <a class="el" href="structOpenMS_1_1ReverseComparator.html" title="Wrapper that reverses (exchanges) the two arguments of a comparator. Normally you should use the make...">ReverseComparator</a> from another comparator without the need to specify the template arguments. </p>
<p>For example, </p>
<pre>
int i = 88, j = 99;
if ( reverseComparator(std::less<int>())(j,i) )
{
  // yes, 99 > 88.
}
</pre>
<p>Referenced by <a class="el" href="classOpenMS_1_1ConsensusMap.html#ae48739acf91763132e117f8b608da145">ConsensusMap::convert()</a>, <a class="el" href="classOpenMS_1_1WindowMower.html#a0075845d43b498a236e1977a1e558301">WindowMower::filterPeakSpectrumForTopNInJumpingWindow()</a>, <a class="el" href="classOpenMS_1_1SimpleSeeder.html#a6aca068dd3cf1a6c7e78091c9bdae961">SimpleSeeder< PeakType, FeatureType >::initialize_()</a>, <a class="el" href="classOpenMS_1_1MSChromatogram.html#a93f1c9f620403aec160d98e83e125502">MSChromatogram< ChromatogramPeakType >::sortByIntensity()</a>, <a class="el" href="classOpenMS_1_1MSSpectrum.html#a93f1c9f620403aec160d98e83e125502">MSSpectrum< RichPeak1D >::sortByIntensity()</a>, <a class="el" href="classOpenMS_1_1ConstRefVector.html#a93f1c9f620403aec160d98e83e125502">ConstRefVector< ContainerT >::sortByIntensity()</a>, and <a class="el" href="classOpenMS_1_1FeatureMap.html#a099506e6c3af2ab3e2ad1ed8781e0691">FeatureMap< OpenMS::Feature >::sortByOverallQuality()</a>.</p>
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<td class="memname">void OpenMS::scoreOnDevice </td>
<td>(</td>
<td class="paramtype">int * </td>
<td class="paramname"><em>sorted_positions_indices</em>, </td>
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<td class="paramtype">float * </td>
<td class="paramname"><em>trans_intensities</em>, </td>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">float * </td>
<td class="paramname"><em>pos</em>, </td>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">float * </td>
<td class="paramname"><em>scores</em>, </td>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">const int </td>
<td class="paramname"><em>c</em>, </td>
</tr>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">const int </td>
<td class="paramname"><em>num_of_scores</em>, </td>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">const int </td>
<td class="paramname"><em>overall_size</em>, </td>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">const unsigned int </td>
<td class="paramname"><em>max_peak_cutoff</em>, </td>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">const float </td>
<td class="paramname"><em>ampl_cutoff</em> </td>
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<td></td>
<td>)</td>
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<td class="memname">int OpenMS::sortOnDevice </td>
<td>(</td>
<td class="paramtype">float * </td>
<td class="paramname"><em>array</em>, </td>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">int * </td>
<td class="paramname"><em>pos_indices</em>, </td>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">int </td>
<td class="paramname"><em>numElements</em>, </td>
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<td></td>
<td class="paramtype">int </td>
<td class="paramname"><em>padding</em> </td>
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<td>)</td>
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<td class="memname">std::string OpenMS::typeAsString </td>
<td>(</td>
<td class="paramtype">const Type & </td>
<td class="paramname"> = <code>Type()</code></td><td>)</td>
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<p>Returns the <code>Type</code> as as std::string. </p>
<p>Have you ever spent a long time trying to find out what a <code>typedef</code> actually "points" to? Then this can help.</p>
<p>typeAsString is implemented as a function template. There are two ways to us this: </p>
<div class="fragment"><div class="line">SomeType instance;</div>
<div class="line"><span class="keywordtype">string</span> what_type_1 = <a class="code" href="namespaceOpenMS.html#a6f7145ffc251038582da541efc38a0d1">typeAsString</a>(instance);</div>
<div class="line"><span class="keywordtype">string</span> what_type_2 = typeAsString< SomeType >();</div>
</div><!-- fragment --><p> The typeAsString< SomeType >() version seems to go a bit deeper. Sometimes the results depend on how the typeAsString() is instantiated in the first place. The argument given to the function is never used, it only serves to infer the type. You can even supply function pointers, etc.</p>
<p>Example (Tutorial_typeAsString.C): <div class="fragment"><div class="line"><span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><span class="comment">// OpenMS -- Open-Source Mass Spectrometry</span></div>
<div class="line"><span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
<div class="line"><span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
<div class="line"><span class="comment">//</span></div>
<div class="line"><span class="comment">// This software is released under a three-clause BSD license:</span></div>
<div class="line"><span class="comment">// * Redistributions of source code must retain the above copyright</span></div>
<div class="line"><span class="comment">// notice, this list of conditions and the following disclaimer.</span></div>
<div class="line"><span class="comment">// * Redistributions in binary form must reproduce the above copyright</span></div>
<div class="line"><span class="comment">// notice, this list of conditions and the following disclaimer in the</span></div>
<div class="line"><span class="comment">// documentation and/or other materials provided with the distribution.</span></div>
<div class="line"><span class="comment">// * Neither the name of any author or any participating institution</span></div>
<div class="line"><span class="comment">// may be used to endorse or promote products derived from this software</span></div>
<div class="line"><span class="comment">// without specific prior written permission.</span></div>
<div class="line"><span class="comment">// For a full list of authors, refer to the file AUTHORS.</span></div>
<div class="line"><span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><span class="comment">// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"</span></div>
<div class="line"><span class="comment">// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE</span></div>
<div class="line"><span class="comment">// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE</span></div>
<div class="line"><span class="comment">// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING</span></div>
<div class="line"><span class="comment">// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,</span></div>
<div class="line"><span class="comment">// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,</span></div>
<div class="line"><span class="comment">// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;</span></div>
<div class="line"><span class="comment">// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,</span></div>
<div class="line"><span class="comment">// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR</span></div>
<div class="line"><span class="comment">// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF</span></div>
<div class="line"><span class="comment">// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</span></div>
<div class="line"><span class="comment">//</span></div>
<div class="line"></div>
<div class="line"><span class="preprocessor">#include <<a class="code" href="Types_8h.html">OpenMS/CONCEPT/Types.h</a>></span></div>
<div class="line"><span class="preprocessor">#include <<a class="code" href="DPeak_8h.html">OpenMS/KERNEL/DPeak.h</a>></span></div>
<div class="line"><span class="preprocessor">#include <iostream></span></div>
<div class="line"></div>
<div class="line"><span class="keywordtype">double</span> someFunc(<span class="keywordtype">int</span>, <span class="keywordtype">int</span> *)</div>
<div class="line">{</div>
<div class="line"> <span class="keywordflow">return</span> 9.9;</div>
<div class="line">}</div>
<div class="line"></div>
<div class="line"><span class="keyword">template</span> <<span class="keyword">typename</span>, <span class="keywordtype">int</span> = 5></div>
<div class="line"><span class="keyword">struct </span>WOW</div>
<div class="line">{</div>
<div class="line"> <span class="keyword">static</span> <span class="keywordtype">float</span> staticMemberFunc(<span class="keywordtype">float</span> &) {<span class="keywordflow">return</span> 0; }</div>
<div class="line"> <span class="keywordtype">double</span> memberFunc(<span class="keyword">const</span> <span class="keywordtype">double</span> &) {<span class="keywordflow">return</span> 0; }</div>
<div class="line">};</div>
<div class="line"></div>
<div class="line"><span class="keyword">template</span> <<span class="keyword">typename</span> X, <span class="keywordtype">int</span> I, <span class="keywordtype">unsigned</span> J = 666, <span class="keyword">template</span> <<span class="keyword">class</span>, <span class="keywordtype">int</span>> <span class="keyword">class </span>WauWau = WOW></div>
<div class="line"><span class="keyword">struct </span>Oink {};</div>
<div class="line"></div>
<div class="line"><span class="keywordtype">int</span> <a class="code" href="RNPxl_8C.html#a217dbf8b442f20279ea00b898af96f52">main</a>()</div>
<div class="line">{</div>
<div class="line"> <span class="keyword">using namespace </span>OpenMS;</div>
<div class="line"> <span class="keyword">using namespace </span>std;</div>
<div class="line"></div>
<div class="line"> cout << <a class="code" href="namespaceOpenMS.html#a6f7145ffc251038582da541efc38a0d1">typeAsString</a>(1) << endl;</div>
<div class="line"> cout << <a class="code" href="namespaceOpenMS.html#a6f7145ffc251038582da541efc38a0d1">typeAsString</a>(2u) << endl;</div>
<div class="line"> cout << <a class="code" href="namespaceOpenMS.html#a6f7145ffc251038582da541efc38a0d1">typeAsString</a>(3.) << endl;</div>
<div class="line"> cout << <a class="code" href="namespaceOpenMS.html#a6f7145ffc251038582da541efc38a0d1">typeAsString</a>(4.f) << endl;</div>
<div class="line"> cout << endl;</div>
<div class="line"> cout << typeAsString<Int>() << endl;</div>
<div class="line"> cout << typeAsString<PointerSizeUInt>() << endl;</div>
<div class="line"> cout << endl;</div>
<div class="line"> cout << <a class="code" href="namespaceOpenMS.html#a6f7145ffc251038582da541efc38a0d1">typeAsString</a>(<a class="code" href="classOpenMS_1_1Peak1D.html">Peak1D</a>()) << endl;</div>
<div class="line"> cout << typeAsString(DPeak<1>::Type()) << endl;</div>
<div class="line"> cout << typeAsString(DPeak<1>::Type::PositionType()) << endl;</div>
<div class="line"> <a class="code" href="AdditiveSeries_8C.html#a75145a9f1f2689d0f54565ffbdb1f5d6">cout << typeAsString<DPeak<1>::Type::CoordinateType</a>>() << endl;</div>
<div class="line"> cout << typeAsString<DPeak<1>::Type::IntensityType>() << endl;</div>
<div class="line"> cout << endl;</div>
<div class="line"> cout << <a class="code" href="namespaceOpenMS.html#a6f7145ffc251038582da541efc38a0d1">typeAsString</a>(&someFunc) << endl;</div>
<div class="line"> cout << typeAsString<WOW<char const * const *** const &> >() << endl;</div>
<div class="line"> cout << typeAsString<Oink<double, 55> >() << endl;</div>
<div class="line"> cout << typeAsString(&WOW<string, 8>::staticMemberFunc) << endl;</div>
<div class="line"> cout << typeAsString(&WOW<char, 8>::memberFunc) << endl;</div>
<div class="line"></div>
<div class="line"> <span class="keywordflow">return</span> 0;</div>
<div class="line">} <span class="comment">// end of Tutorial_typeAsString.C</span></div>
</div><!-- fragment --> On a 64 bit platform running GCC 4.3.1, this produced the following output: </p>
<div class="fragment"><div class="line"><span class="keywordtype">int</span></div>
<div class="line"><span class="keywordtype">unsigned</span> <span class="keywordtype">int</span></div>
<div class="line"><span class="keywordtype">double</span></div>
<div class="line"><span class="keywordtype">float</span></div>
<div class="line"></div>
<div class="line"><span class="keywordtype">int</span></div>
<div class="line"><span class="keywordtype">long</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span></div>
<div class="line"></div>
<div class="line"><a class="code" href="classOpenMS_1_1Peak1D.html">OpenMS::Peak1D</a></div>
<div class="line"><a class="code" href="classOpenMS_1_1Peak1D.html">OpenMS::Peak1D</a></div>
<div class="line"><a class="code" href="classOpenMS_1_1DPosition.html">OpenMS::DPosition<1u></a></div>
<div class="line"><span class="keywordtype">double</span></div>
<div class="line"><span class="keywordtype">float</span></div>
<div class="line"></div>
<div class="line"><a class="code" href="classdouble.html">double</a> ()(int, <span class="keywordtype">int</span>*)</div>
<div class="line">WOW<const char* const*** const&, 5></div>
<div class="line">Oink<double, 55, 666u, WOW></div>
<div class="line"><span class="keywordtype">float</span> ()(<span class="keywordtype">float</span>&)</div>
<div class="line"><span class="keywordtype">double</span> (WOW<char, 8>::*)(<span class="keyword">const</span> <span class="keywordtype">double</span>&)</div>
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<td class="memname"><a class="el" href="classOpenMS_1_1UnaryComposeFunctionAdapter.html">UnaryComposeFunctionAdapter</a><OP1, OP2> OpenMS::unaryCompose </td>
<td>(</td>
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<p>convenience function for the <code><a class="el" href="classOpenMS_1_1UnaryComposeFunctionAdapter.html" title="Represents the function object unary adapter. ">UnaryComposeFunctionAdapter</a></code> adapter </p>
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<td class="memname"><a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> writtenDigits </td>
<td>(</td>
<td class="paramtype">const FloatingPointType & </td>
<td class="paramname"> = <code>FloatingPointType()</code></td><td>)</td>
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<p>Number of digits commonly used for writing a floating point type (a.k.a. precision). Specializations are defined for float, double, long double. </p>
<p>The general template definition will force a compile-time error if FloatingPointType is in fact not a floating point type. Only the template specializations for float, double, long double shall be used. </p>
<p>Referenced by <a class="el" href="namespaceOpenMS.html#a3a807457e27c47a1f9df50e693f09820">operator<<()</a>.</p>
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<td class="memname"><a class="el" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> <a class="el" href="namespaceOpenMS.html#aea04da6adf64cf9ebd7ad8b4f2dc864e">OpenMS::writtenDigits</a>< <a class="el" href="classOpenMS_1_1DataValue.html">DataValue</a> > </td>
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<p><a class="el" href="classOpenMS_1_1DataValue.html" title="Class to hold strings, numeric values, lists of strings and lists of numeric values. ">DataValue</a> will be printed like double. </p>
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<p>Number of digits commonly used for writing a <code>double</code> (a.k.a. precision). </p>
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<p>Number of digits commonly used for writing a <code>float</code> (a.k.a. precision). </p>
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<p>We do not want to bother people who unintentionally provide an int argument to this. </p>
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<p>Number of digits commonly used for writing a <code>long</code> <code>double</code> (a.k.a. precision). ... </p>
<p>Note: On Microsoft platforms, the I/O sytem seems to treat <code>long</code> <code>double</code> just like <code>double</code>. We observed that <code>std::numeric_limits<long double>::digits10 == 18</code> with GCC 3.4 on MinGW, but this promise is <em>not</em> kept by the Microsoft I/O sytem libraries. Therefore we use the value of <code>digits10</code> for <code>double</code> also for <code>long</code> <code>double</code>. See <a href="http://msdn.microsoft.com/">http://msdn.microsoft.com/</a> + search: "long double". </p>
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<p>We do not want to bother people who unintentionally provide a long int argument to this. </p>
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<p>We do not want to bother people who unintentionally provide an unsigned int argument to this. </p>
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<p>We do not want to bother people who unintentionally provide an unsigned long int argument to this. </p>
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<h2 class="groupheader">Variable Documentation</h2>
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<td class="memname"><a class="el" href="classOpenMS_1_1Logger_1_1LogStream.html">Logger::LogStream</a> Log_debug</td>
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<p>Global static instance of a LogStream to capture messages classified as debug output. By default it is not bound to any output stream. </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1Logger_1_1LogStream.html">Logger::LogStream</a> Log_error</td>
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<p>Global static instance of a LogStream to capture messages classified as errors. By default it is bound to <b>cerr</b>. </p>
<p>Referenced by <a class="el" href="TOPPAS_8C.html#a217dbf8b442f20279ea00b898af96f52">main()</a>.</p>
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<td class="memname"><a class="el" href="classOpenMS_1_1Logger_1_1LogStream.html">Logger::LogStream</a> Log_fatal</td>
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<p>Global static instance of a LogStream to capture messages classified as fatal errors. By default it is bound to <b>cerr</b>. </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1Logger_1_1LogStream.html">Logger::LogStream</a> Log_info</td>
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<p>Global static instance of a LogStream to capture messages classified as information. By default it is bound to <b>cout</b>. </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1Logger_1_1LogStream.html">Logger::LogStream</a> Log_warn</td>
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<p>Global static instance of a LogStream to capture messages classified as warnings. By default it is bound to <b>cout</b>. </p>
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<td class="memname"><a class="el" href="classOpenMS_1_1StreamHandler.html">StreamHandler</a> STREAM_HANDLER</td>
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<p>Global <a class="el" href="classOpenMS_1_1StreamHandler.html" title="Provides a central class to register globally used output streams. Currently supported streams are...">StreamHandler</a> instance. </p>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:25 using doxygen 1.8.5</font></TD>
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