1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
|
<HTML>
<HEAD>
<TITLE>OpenMS::Math Namespace Reference</TITLE>
<LINK HREF="doxygen.css" REL="stylesheet" TYPE="text/css">
<LINK HREF="style_ini.css" REL="stylesheet" TYPE="text/css">
</HEAD>
<BODY BGCOLOR="#FFFFFF">
<A href="index.html">Home</A> ·
<A href="classes.html">Classes</A> ·
<A href="annotated.html">Annotated Classes</A> ·
<A href="modules.html">Modules</A> ·
<A href="functions_func.html">Members</A> ·
<A href="namespaces.html">Namespaces</A> ·
<A href="pages.html">Related Pages</A>
<HR style="height:1px; border:none; border-top:1px solid #c0c0c0;">
<!-- Generated by Doxygen 1.8.5 -->
<div id="nav-path" class="navpath">
<ul>
<li class="navelem"><a class="el" href="namespaceOpenMS.html">OpenMS</a></li><li class="navelem"><a class="el" href="namespaceOpenMS_1_1Math.html">Math</a></li> </ul>
</div>
</div><!-- top -->
<div class="header">
<div class="summary">
<a href="#nested-classes">Classes</a> |
<a href="#func-members">Functions</a> </div>
<div class="headertitle">
<div class="title">OpenMS::Math Namespace Reference<div class="ingroups"><a class="el" href="group__Concept.html">Concept</a></div></div> </div>
</div><!--header-->
<div class="contents">
<p>Math namespace.
<a href="#details">More...</a></p>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
Classes</h2></td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Math_1_1BilinearInterpolation.html">BilinearInterpolation</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Provides access to bilinearly interpolated values (and derivatives) from discrete data points. Values beyond the given range of data points are implicitly taken as zero. <a href="classOpenMS_1_1Math_1_1BilinearInterpolation.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Math_1_1LinearInterpolation.html">LinearInterpolation</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Provides access to linearly interpolated values (and derivatives) from discrete data points. Values beyond the given range of data points are implicitly taken as zero. <a href="classOpenMS_1_1Math_1_1LinearInterpolation.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Math_1_1AsymmetricStatistics.html">AsymmetricStatistics</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="namespaceOpenMS_1_1Internal.html" title="Namespace used to hide implementation details from users. ">Internal</a> class for asymmetric distributions. <a href="classOpenMS_1_1Math_1_1AsymmetricStatistics.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Math_1_1AveragePosition.html">AveragePosition</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Maintain an average position by summing up positions with weights. <a href="classOpenMS_1_1Math_1_1AveragePosition.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Math_1_1BasicStatistics.html">BasicStatistics</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Calculates some basic statistical parameters of a distribution: sum, mean, variance, and provides the normal approximation. <a href="classOpenMS_1_1Math_1_1BasicStatistics.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Math_1_1GammaDistributionFitter.html">GammaDistributionFitter</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Implements a fitter for the Gamma distribution. <a href="classOpenMS_1_1Math_1_1GammaDistributionFitter.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Math_1_1GaussFitter.html">GaussFitter</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Implements a fitter for gaussian functions. <a href="classOpenMS_1_1Math_1_1GaussFitter.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Math_1_1GumbelDistributionFitter.html">GumbelDistributionFitter</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Implements a fitter for the Gumbel distribution. <a href="classOpenMS_1_1Math_1_1GumbelDistributionFitter.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Math_1_1Histogram.html">Histogram</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Representation of a histogram. <a href="classOpenMS_1_1Math_1_1Histogram.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Math_1_1LinearRegression.html">LinearRegression</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">This class offers functions to perform least-squares fits to a straight line model, <img class="formulaInl" alt="$ Y(c,x) = c_0 + c_1 x $" src="form_84.png"/>. <a href="classOpenMS_1_1Math_1_1LinearRegression.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Math_1_1PosteriorErrorProbabilityModel.html">PosteriorErrorProbabilityModel</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Implements a mixture model of the inverse gumbel and the gauss distribution or a gaussian mixture. <a href="classOpenMS_1_1Math_1_1PosteriorErrorProbabilityModel.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1Math_1_1ROCCurve.html">ROCCurve</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">ROCCurves show the tradeoff in sensitivity and specitivity for binary classifiers using different cutoff values. <a href="classOpenMS_1_1Math_1_1ROCCurve.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
Functions</h2></td></tr>
<tr class="memitem:ga8c08348404d21e0cffa72ea474ad07c6"><td class="memItemLeft" align="right" valign="top">static <a class="el" href="classdouble.html">double</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__MathFunctionsMisc.html#ga8c08348404d21e0cffa72ea474ad07c6">ceilDecimal</a> (<a class="el" href="classdouble.html">double</a> x, int decPow)</td></tr>
<tr class="memdesc:ga8c08348404d21e0cffa72ea474ad07c6"><td class="mdescLeft"> </td><td class="mdescRight">rounds <code>x</code> up to the next decimal power 10 ^ <code>decPow</code> <a href="group__MathFunctionsMisc.html#ga8c08348404d21e0cffa72ea474ad07c6">More...</a><br/></td></tr>
<tr class="separator:ga8c08348404d21e0cffa72ea474ad07c6"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ga329ad34d4dd857860f3b62acbffac81d"><td class="memItemLeft" align="right" valign="top">static <a class="el" href="classdouble.html">double</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__MathFunctionsMisc.html#ga329ad34d4dd857860f3b62acbffac81d">roundDecimal</a> (<a class="el" href="classdouble.html">double</a> x, int decPow)</td></tr>
<tr class="memdesc:ga329ad34d4dd857860f3b62acbffac81d"><td class="mdescLeft"> </td><td class="mdescRight">rounds <code>x</code> to the next decimal power 10 ^ <code>decPow</code> <a href="group__MathFunctionsMisc.html#ga329ad34d4dd857860f3b62acbffac81d">More...</a><br/></td></tr>
<tr class="separator:ga329ad34d4dd857860f3b62acbffac81d"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ga7ef2b76663a3979d5f6580ca42fa7d46"><td class="memItemLeft" align="right" valign="top">static <a class="el" href="classdouble.html">double</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__MathFunctionsMisc.html#ga7ef2b76663a3979d5f6580ca42fa7d46">intervalTransformation</a> (<a class="el" href="classdouble.html">double</a> x, <a class="el" href="classdouble.html">double</a> left1, <a class="el" href="classdouble.html">double</a> right1, <a class="el" href="classdouble.html">double</a> left2, <a class="el" href="classdouble.html">double</a> right2)</td></tr>
<tr class="memdesc:ga7ef2b76663a3979d5f6580ca42fa7d46"><td class="mdescLeft"> </td><td class="mdescRight">transforms point <code>x</code> of interval [left1,right1] into interval [left2,right2] <a href="group__MathFunctionsMisc.html#ga7ef2b76663a3979d5f6580ca42fa7d46">More...</a><br/></td></tr>
<tr class="separator:ga7ef2b76663a3979d5f6580ca42fa7d46"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ga36a865b11e5ad3aee14ce8b5705a3b9b"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classdouble.html">double</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__MathFunctionsMisc.html#ga36a865b11e5ad3aee14ce8b5705a3b9b">linear2log</a> (<a class="el" href="classdouble.html">double</a> x)</td></tr>
<tr class="memdesc:ga36a865b11e5ad3aee14ce8b5705a3b9b"><td class="mdescLeft"> </td><td class="mdescRight">Transforms a number from linear to log10 scale. Avoids negative logarithms by adding 1. <a href="group__MathFunctionsMisc.html#ga36a865b11e5ad3aee14ce8b5705a3b9b">More...</a><br/></td></tr>
<tr class="separator:ga36a865b11e5ad3aee14ce8b5705a3b9b"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ga5e6462b4b9ae8a247bd9294892e2e0eb"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classdouble.html">double</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__MathFunctionsMisc.html#ga5e6462b4b9ae8a247bd9294892e2e0eb">log2linear</a> (<a class="el" href="classdouble.html">double</a> x)</td></tr>
<tr class="memdesc:ga5e6462b4b9ae8a247bd9294892e2e0eb"><td class="mdescLeft"> </td><td class="mdescRight">Transforms a number from log10 to to linear scale. Subtracts the 1 added by <a class="el" href="group__MathFunctionsMisc.html#ga36a865b11e5ad3aee14ce8b5705a3b9b" title="Transforms a number from linear to log10 scale. Avoids negative logarithms by adding 1...">linear2log(double)</a> <a href="group__MathFunctionsMisc.html#ga5e6462b4b9ae8a247bd9294892e2e0eb">More...</a><br/></td></tr>
<tr class="separator:ga5e6462b4b9ae8a247bd9294892e2e0eb"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:gadaeb3f406822442307da5b2b94c40885"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="group__MathFunctionsMisc.html#gadaeb3f406822442307da5b2b94c40885">isOdd</a> (<a class="el" href="group__Concept.html#gaba0996d26f7be2572973245b51852757">UInt</a> x)</td></tr>
<tr class="memdesc:gadaeb3f406822442307da5b2b94c40885"><td class="mdescLeft"> </td><td class="mdescRight">Returns true if the given interger is odd. <a href="group__MathFunctionsMisc.html#gadaeb3f406822442307da5b2b94c40885">More...</a><br/></td></tr>
<tr class="separator:gadaeb3f406822442307da5b2b94c40885"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ga3994eea4342458b8d83ae1984b72d6ac"><td class="memTemplParams" colspan="2">template<typename T > </td></tr>
<tr class="memitem:ga3994eea4342458b8d83ae1984b72d6ac"><td class="memTemplItemLeft" align="right" valign="top">T </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="group__MathFunctionsMisc.html#ga3994eea4342458b8d83ae1984b72d6ac">round</a> (T x)</td></tr>
<tr class="memdesc:ga3994eea4342458b8d83ae1984b72d6ac"><td class="mdescLeft"> </td><td class="mdescRight">Rounds the value. <a href="group__MathFunctionsMisc.html#ga3994eea4342458b8d83ae1984b72d6ac">More...</a><br/></td></tr>
<tr class="separator:ga3994eea4342458b8d83ae1984b72d6ac"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ga3c56bd90567ff1edc267267ffdb6adc1"><td class="memItemLeft" align="right" valign="top">static bool </td><td class="memItemRight" valign="bottom"><a class="el" href="group__MathFunctionsMisc.html#ga3c56bd90567ff1edc267267ffdb6adc1">approximatelyEqual</a> (<a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> a, <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> b, <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> tol)</td></tr>
<tr class="memdesc:ga3c56bd90567ff1edc267267ffdb6adc1"><td class="mdescLeft"> </td><td class="mdescRight">Returns if <code>a</code> is approximately equal <code>b</code> , allowing a tolerance of <code>tol</code>. <a href="group__MathFunctionsMisc.html#ga3c56bd90567ff1edc267267ffdb6adc1">More...</a><br/></td></tr>
<tr class="separator:ga3c56bd90567ff1edc267267ffdb6adc1"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ga1cb9666a99e571c3fa1eb07c546bdf92"><td class="memTemplParams" colspan="2">template<typename T > </td></tr>
<tr class="memitem:ga1cb9666a99e571c3fa1eb07c546bdf92"><td class="memTemplItemLeft" align="right" valign="top">T </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="group__MathFunctionsMisc.html#ga1cb9666a99e571c3fa1eb07c546bdf92">gcd</a> (T a, T b)</td></tr>
<tr class="memdesc:ga1cb9666a99e571c3fa1eb07c546bdf92"><td class="mdescLeft"> </td><td class="mdescRight">Returns the greatest common divisor (gcd) of two numbers by applying the Euclidean algorithm. <a href="group__MathFunctionsMisc.html#ga1cb9666a99e571c3fa1eb07c546bdf92">More...</a><br/></td></tr>
<tr class="separator:ga1cb9666a99e571c3fa1eb07c546bdf92"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:gad1c15acd54bb0012cc490de35e19cf34"><td class="memTemplParams" colspan="2">template<typename T > </td></tr>
<tr class="memitem:gad1c15acd54bb0012cc490de35e19cf34"><td class="memTemplItemLeft" align="right" valign="top">T </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="group__MathFunctionsMisc.html#gad1c15acd54bb0012cc490de35e19cf34">gcd</a> (T a, T b, T &u1, T &u2)</td></tr>
<tr class="memdesc:gad1c15acd54bb0012cc490de35e19cf34"><td class="mdescLeft"> </td><td class="mdescRight">Returns the greatest common divisor by applying the extended Euclidean algorithm (Knuth TAoCP vol. 2, p342). Calculates u1, u2 and u3 (which is returned) so that a * u1 + b * u2 = u3 = gcd(a, b, u1, u2) <a href="group__MathFunctionsMisc.html#gad1c15acd54bb0012cc490de35e19cf34">More...</a><br/></td></tr>
<tr class="separator:gad1c15acd54bb0012cc490de35e19cf34"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a653635463730ec2dc07da8778f41f22e"><td class="memTemplParams" colspan="2">template<typename ValueType , typename BinSizeType > </td></tr>
<tr class="memitem:a653635463730ec2dc07da8778f41f22e"><td class="memTemplItemLeft" align="right" valign="top">std::ostream & </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="namespaceOpenMS_1_1Math.html#a653635463730ec2dc07da8778f41f22e">operator<<</a> (std::ostream &os, const <a class="el" href="classOpenMS_1_1Math_1_1Histogram.html">Histogram</a>< ValueType, BinSizeType > &hist)</td></tr>
<tr class="memdesc:a653635463730ec2dc07da8778f41f22e"><td class="mdescLeft"> </td><td class="mdescRight">Print the contents to a stream. <a href="#a653635463730ec2dc07da8778f41f22e">More...</a><br/></td></tr>
<tr class="separator:a653635463730ec2dc07da8778f41f22e"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ga55edf7ee469b3d635c367d9c83fe87f5"><td class="memTemplParams" colspan="2">template<typename IteratorType > </td></tr>
<tr class="memitem:ga55edf7ee469b3d635c367d9c83fe87f5"><td class="memTemplItemLeft" align="right" valign="top">static <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="group__MathFunctionsStatistics.html#ga55edf7ee469b3d635c367d9c83fe87f5">sum</a> (IteratorType begin, IteratorType end)</td></tr>
<tr class="memdesc:ga55edf7ee469b3d635c367d9c83fe87f5"><td class="mdescLeft"> </td><td class="mdescRight">Calculates the sum of a range of values. <a href="group__MathFunctionsStatistics.html#ga55edf7ee469b3d635c367d9c83fe87f5">More...</a><br/></td></tr>
<tr class="separator:ga55edf7ee469b3d635c367d9c83fe87f5"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ga3b4f6f94ad2e4cc1c10753b5f84679c2"><td class="memTemplParams" colspan="2">template<typename IteratorType > </td></tr>
<tr class="memitem:ga3b4f6f94ad2e4cc1c10753b5f84679c2"><td class="memTemplItemLeft" align="right" valign="top">static <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="group__MathFunctionsStatistics.html#ga3b4f6f94ad2e4cc1c10753b5f84679c2">mean</a> (IteratorType begin, IteratorType end)</td></tr>
<tr class="memdesc:ga3b4f6f94ad2e4cc1c10753b5f84679c2"><td class="mdescLeft"> </td><td class="mdescRight">Calculates the mean of a range of values. <a href="group__MathFunctionsStatistics.html#ga3b4f6f94ad2e4cc1c10753b5f84679c2">More...</a><br/></td></tr>
<tr class="separator:ga3b4f6f94ad2e4cc1c10753b5f84679c2"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:gafcd2e67b4c1266a30180148566bb4566"><td class="memTemplParams" colspan="2">template<typename IteratorType > </td></tr>
<tr class="memitem:gafcd2e67b4c1266a30180148566bb4566"><td class="memTemplItemLeft" align="right" valign="top">static <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="group__MathFunctionsStatistics.html#gafcd2e67b4c1266a30180148566bb4566">median</a> (IteratorType begin, IteratorType end, bool sorted=FALSE)</td></tr>
<tr class="memdesc:gafcd2e67b4c1266a30180148566bb4566"><td class="mdescLeft"> </td><td class="mdescRight">Calculates the median of a range of values. <a href="group__MathFunctionsStatistics.html#gafcd2e67b4c1266a30180148566bb4566">More...</a><br/></td></tr>
<tr class="separator:gafcd2e67b4c1266a30180148566bb4566"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:gae779ba2dbd04c288fa89326f31ebdb61"><td class="memTemplParams" colspan="2">template<typename IteratorType > </td></tr>
<tr class="memitem:gae779ba2dbd04c288fa89326f31ebdb61"><td class="memTemplItemLeft" align="right" valign="top">static <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="group__MathFunctionsStatistics.html#gae779ba2dbd04c288fa89326f31ebdb61">quantile</a> (IteratorType begin, IteratorType end, <a class="el" href="group__Concept.html#gaba0996d26f7be2572973245b51852757">UInt</a> quantile, bool sorted=FALSE)</td></tr>
<tr class="memdesc:gae779ba2dbd04c288fa89326f31ebdb61"><td class="mdescLeft"> </td><td class="mdescRight">Calculates the quantile of a range of values. <a href="group__MathFunctionsStatistics.html#gae779ba2dbd04c288fa89326f31ebdb61">More...</a><br/></td></tr>
<tr class="separator:gae779ba2dbd04c288fa89326f31ebdb61"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:gaf576fb029562af7a9cba9ad7b61fff69"><td class="memTemplParams" colspan="2">template<typename IteratorType1 , typename IteratorType2 > </td></tr>
<tr class="memitem:gaf576fb029562af7a9cba9ad7b61fff69"><td class="memTemplItemLeft" align="right" valign="top">static <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="group__MathFunctionsStatistics.html#gaf576fb029562af7a9cba9ad7b61fff69">meanSquareError</a> (IteratorType1 begin_a, IteratorType1 end_a, IteratorType2 begin_b, IteratorType2 end_b)</td></tr>
<tr class="memdesc:gaf576fb029562af7a9cba9ad7b61fff69"><td class="mdescLeft"> </td><td class="mdescRight">Calculates the mean square error for the values in [begin_a, end_a) and [begin_b, end_b) <a href="group__MathFunctionsStatistics.html#gaf576fb029562af7a9cba9ad7b61fff69">More...</a><br/></td></tr>
<tr class="separator:gaf576fb029562af7a9cba9ad7b61fff69"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:gacea2a92810337b295cf1a1fde5f8aa62"><td class="memTemplParams" colspan="2">template<typename IteratorType1 , typename IteratorType2 > </td></tr>
<tr class="memitem:gacea2a92810337b295cf1a1fde5f8aa62"><td class="memTemplItemLeft" align="right" valign="top">static <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="group__MathFunctionsStatistics.html#gacea2a92810337b295cf1a1fde5f8aa62">classificationRate</a> (IteratorType1 begin_a, IteratorType1 end_a, IteratorType2 begin_b, IteratorType2 end_b)</td></tr>
<tr class="memdesc:gacea2a92810337b295cf1a1fde5f8aa62"><td class="mdescLeft"> </td><td class="mdescRight">Calculates the classification rate for the values in [begin_a, end_a) and [begin_b, end_b) <a href="group__MathFunctionsStatistics.html#gacea2a92810337b295cf1a1fde5f8aa62">More...</a><br/></td></tr>
<tr class="separator:gacea2a92810337b295cf1a1fde5f8aa62"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:gaa5a00f16c976d14177d9f30224ab9576"><td class="memTemplParams" colspan="2">template<typename IteratorType1 , typename IteratorType2 > </td></tr>
<tr class="memitem:gaa5a00f16c976d14177d9f30224ab9576"><td class="memTemplItemLeft" align="right" valign="top">static <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="group__MathFunctionsStatistics.html#gaa5a00f16c976d14177d9f30224ab9576">matthewsCorrelationCoefficient</a> (IteratorType1 begin_a, IteratorType1 end_a, IteratorType2 begin_b, IteratorType2 end_b)</td></tr>
<tr class="memdesc:gaa5a00f16c976d14177d9f30224ab9576"><td class="mdescLeft"> </td><td class="mdescRight">Calculates the Matthews correlation coefficient for the values in [begin_a, end_a) and [begin_b, end_b) <a href="group__MathFunctionsStatistics.html#gaa5a00f16c976d14177d9f30224ab9576">More...</a><br/></td></tr>
<tr class="separator:gaa5a00f16c976d14177d9f30224ab9576"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:gac7a454e1847d508ba6635d47f49fbe8c"><td class="memTemplParams" colspan="2">template<typename IteratorType1 , typename IteratorType2 > </td></tr>
<tr class="memitem:gac7a454e1847d508ba6635d47f49fbe8c"><td class="memTemplItemLeft" align="right" valign="top">static <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="group__MathFunctionsStatistics.html#gac7a454e1847d508ba6635d47f49fbe8c">pearsonCorrelationCoefficient</a> (IteratorType1 begin_a, IteratorType1 end_a, IteratorType2 begin_b, IteratorType2 end_b)</td></tr>
<tr class="memdesc:gac7a454e1847d508ba6635d47f49fbe8c"><td class="mdescLeft"> </td><td class="mdescRight">Calculates the Pearson correlation coefficient for the values in [begin_a, end_a) and [begin_b, end_b) <a href="group__MathFunctionsStatistics.html#gac7a454e1847d508ba6635d47f49fbe8c">More...</a><br/></td></tr>
<tr class="separator:gac7a454e1847d508ba6635d47f49fbe8c"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aa1afedb13081dd5b98600a0b8bf63059"><td class="memTemplParams" colspan="2">template<typename Value > </td></tr>
<tr class="memitem:aa1afedb13081dd5b98600a0b8bf63059"><td class="memTemplItemLeft" align="right" valign="top">static void </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="namespaceOpenMS_1_1Math.html#aa1afedb13081dd5b98600a0b8bf63059">computeRank</a> (std::vector< Value > &w)</td></tr>
<tr class="memdesc:aa1afedb13081dd5b98600a0b8bf63059"><td class="mdescLeft"> </td><td class="mdescRight">Replaces the elements in vector <code>w</code> by their ranks. <a href="#aa1afedb13081dd5b98600a0b8bf63059">More...</a><br/></td></tr>
<tr class="separator:aa1afedb13081dd5b98600a0b8bf63059"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ga67443c0e3d0ee860daf4f6f1e371ce2c"><td class="memTemplParams" colspan="2">template<typename IteratorType1 , typename IteratorType2 > </td></tr>
<tr class="memitem:ga67443c0e3d0ee860daf4f6f1e371ce2c"><td class="memTemplItemLeft" align="right" valign="top">static <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="group__MathFunctionsStatistics.html#ga67443c0e3d0ee860daf4f6f1e371ce2c">rankCorrelationCoefficient</a> (IteratorType1 begin_a, IteratorType1 end_a, IteratorType2 begin_b, IteratorType2 end_b)</td></tr>
<tr class="memdesc:ga67443c0e3d0ee860daf4f6f1e371ce2c"><td class="mdescLeft"> </td><td class="mdescRight">calculates the rank correlation coefficient for the values in [begin_a, end_a) and [begin_b, end_b) <a href="group__MathFunctionsStatistics.html#ga67443c0e3d0ee860daf4f6f1e371ce2c">More...</a><br/></td></tr>
<tr class="separator:ga67443c0e3d0ee860daf4f6f1e371ce2c"><td class="memSeparator" colspan="2"> </td></tr>
</table>
<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>Math namespace. </p>
<p>Contains mathematical auxiliary functions. </p>
</div><h2 class="groupheader">Function Documentation</h2>
<a class="anchor" id="aa1afedb13081dd5b98600a0b8bf63059"></a>
<div class="memitem">
<div class="memproto">
<table class="mlabels">
<tr>
<td class="mlabels-left">
<table class="memname">
<tr>
<td class="memname">static void OpenMS::Math::computeRank </td>
<td>(</td>
<td class="paramtype">std::vector< Value > & </td>
<td class="paramname"><em>w</em></td><td>)</td>
<td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">static</span></span> </td>
</tr>
</table>
</div><div class="memdoc">
<p>Replaces the elements in vector <code>w</code> by their ranks. </p>
<p>Referenced by <a class="el" href="group__MathFunctionsStatistics.html#ga67443c0e3d0ee860daf4f6f1e371ce2c">rankCorrelationCoefficient()</a>.</p>
</div>
</div>
<a class="anchor" id="a653635463730ec2dc07da8778f41f22e"></a>
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname">std::ostream& OpenMS::Math::operator<< </td>
<td>(</td>
<td class="paramtype">std::ostream & </td>
<td class="paramname"><em>os</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const Histogram< ValueType, BinSizeType > & </td>
<td class="paramname"><em>hist</em> </td>
</tr>
<tr>
<td></td>
<td>)</td>
<td></td><td></td>
</tr>
</table>
</div><div class="memdoc">
<p>Print the contents to a stream. </p>
</div>
</div>
</div><!-- contents -->
<HR style="height:1px; border:none; border-top:1px solid #c0c0c0;">
<TABLE width="100%" border="0">
<TR>
<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:38 using doxygen 1.8.5</font></TD>
</TR>
</TABLE>
</BODY>
</HTML>
|
