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<p>This class stores helper structures that are used in multiple classes of the <a class="el" href="classOpenMS_1_1TargetedExperiment.html" title="This class stores an prediction of an SRM/MRM transition. ">TargetedExperiment</a> (e.g. <a class="el" href="classOpenMS_1_1ReactionMonitoringTransition.html" title="This class stores a SRM/MRM transition. ">ReactionMonitoringTransition</a> and <a class="el" href="classOpenMS_1_1IncludeExcludeTarget.html" title="This class stores a SRM/MRM transition. ">IncludeExcludeTarget</a>).  
<a href="#details">More...</a></p>
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
Classes</h2></td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1TargetedExperimentHelper_1_1Configuration.html">Configuration</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1TargetedExperimentHelper_1_1CV.html">CV</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1TargetedExperimentHelper_1_1Protein.html">Protein</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TargetedExperimentHelper_1_1RetentionTime.html">RetentionTime</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TargetedExperimentHelper_1_1Compound.html">Compound</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html">Peptide</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1TargetedExperimentHelper_1_1Contact.html">Contact</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1TargetedExperimentHelper_1_1Publication.html">Publication</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1TargetedExperimentHelper_1_1Instrument.html">Instrument</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1TargetedExperimentHelper_1_1Prediction.html">Prediction</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1TargetedExperimentHelper_1_1TraMLProduct.html">TraMLProduct</a></td></tr>
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</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
Functions</h2></td></tr>
<tr class="memitem:ab235a14eca5a54244a08b3e10a180e6f"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classOpenMS_1_1AASequence.html">OpenMS::AASequence</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS_1_1TargetedExperimentHelper.html#ab235a14eca5a54244a08b3e10a180e6f">getAASequence</a> (const <a class="el" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html">Peptide</a> &amp;peptide)</td></tr>
<tr class="memdesc:ab235a14eca5a54244a08b3e10a180e6f"><td class="mdescLeft">&#160;</td><td class="mdescRight">helper function that converts a <a class="el" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html">Peptide</a> object to a <a class="el" href="classOpenMS_1_1AASequence.html" title="Representation of a peptide/protein sequence. ">AASequence</a> object  <a href="#ab235a14eca5a54244a08b3e10a180e6f">More...</a><br/></td></tr>
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<tr class="memitem:af43c41475ceea0dc1fa07f4957c816e7"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS_1_1TargetedExperimentHelper.html#af43c41475ceea0dc1fa07f4957c816e7">setModification</a> (int location, int max_size, <a class="el" href="classOpenMS_1_1String.html">String</a> modification, <a class="el" href="classOpenMS_1_1AASequence.html">OpenMS::AASequence</a> &amp;aas)</td></tr>
<tr class="memdesc:af43c41475ceea0dc1fa07f4957c816e7"><td class="mdescLeft">&#160;</td><td class="mdescRight">helper function that sets a modifiction on a <a class="el" href="classOpenMS_1_1AASequence.html" title="Representation of a peptide/protein sequence. ">AASequence</a> object  <a href="#af43c41475ceea0dc1fa07f4957c816e7">More...</a><br/></td></tr>
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>This class stores helper structures that are used in multiple classes of the <a class="el" href="classOpenMS_1_1TargetedExperiment.html" title="This class stores an prediction of an SRM/MRM transition. ">TargetedExperiment</a> (e.g. <a class="el" href="classOpenMS_1_1ReactionMonitoringTransition.html" title="This class stores a SRM/MRM transition. ">ReactionMonitoringTransition</a> and <a class="el" href="classOpenMS_1_1IncludeExcludeTarget.html" title="This class stores a SRM/MRM transition. ">IncludeExcludeTarget</a>). </p>
</div><h2 class="groupheader">Function Documentation</h2>
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          <td class="memname"><a class="el" href="classOpenMS_1_1AASequence.html">OpenMS::AASequence</a> OpenMS::TargetedExperimentHelper::getAASequence </td>
          <td>(</td>
          <td class="paramtype">const Peptide &amp;&#160;</td>
          <td class="paramname"><em>peptide</em></td><td>)</td>
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<p>helper function that converts a <a class="el" href="classOpenMS_1_1TargetedExperimentHelper_1_1Peptide.html">Peptide</a> object to a <a class="el" href="classOpenMS_1_1AASequence.html" title="Representation of a peptide/protein sequence. ">AASequence</a> object </p>

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          <td class="memname">void OpenMS::TargetedExperimentHelper::setModification </td>
          <td>(</td>
          <td class="paramtype">int&#160;</td>
          <td class="paramname"><em>location</em>, </td>
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          <td class="paramkey"></td>
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          <td class="paramtype">int&#160;</td>
          <td class="paramname"><em>max_size</em>, </td>
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          <td class="paramkey"></td>
          <td></td>
          <td class="paramtype">String&#160;</td>
          <td class="paramname"><em>modification</em>, </td>
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          <td class="paramkey"></td>
          <td></td>
          <td class="paramtype"><a class="el" href="classOpenMS_1_1AASequence.html">OpenMS::AASequence</a> &amp;&#160;</td>
          <td class="paramname"><em>aas</em>&#160;</td>
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          <td></td>
          <td>)</td>
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<p>helper function that sets a modifiction on a <a class="el" href="classOpenMS_1_1AASequence.html" title="Representation of a peptide/protein sequence. ">AASequence</a> object </p>

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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
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