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<HTML>
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<TITLE>OpenMS::ims Namespace Reference</TITLE>
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<li class="navelem"><a class="el" href="namespaceOpenMS.html">OpenMS</a></li><li class="navelem"><a class="el" href="namespaceOpenMS_1_1ims.html">ims</a></li> </ul>
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<div class="title">OpenMS::ims Namespace Reference</div> </div>
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<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
Classes</h2></td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ims_1_1IMSAlphabet.html">IMSAlphabet</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Holds an indexed list of bio-chemical elements. <a href="classOpenMS_1_1ims_1_1IMSAlphabet.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ims_1_1IMSAlphabetParser.html">IMSAlphabetParser</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">An abstract templatized parser to load the data that is used to initialize <code>Alphabet</code> objects. <a href="classOpenMS_1_1ims_1_1IMSAlphabetParser.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ims_1_1IMSAlphabetTextParser.html">IMSAlphabetTextParser</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Implements abstract <code>AlphabetParser</code> to read data from the plain text format. <a href="classOpenMS_1_1ims_1_1IMSAlphabetTextParser.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ims_1_1IMSElement.html">IMSElement</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Represents a chemical atom with name and isotope distribution. <a href="classOpenMS_1_1ims_1_1IMSElement.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ims_1_1IMSIsotopeDistribution.html">IMSIsotopeDistribution</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Represents a distribution of isotopes restricted to the first K elements. <a href="classOpenMS_1_1ims_1_1IMSIsotopeDistribution.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html">IntegerMassDecomposer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Implements <code><a class="el" href="classOpenMS_1_1ims_1_1MassDecomposer.html" title="An inteface to handle decomposing of integer values/masses over a set of integer weights (alphabet)...">MassDecomposer</a></code> interface using algorithm and data structures described in paper "Efficient Mass Decomposition" S. Bcker, Zs. Liptk, ACM SAC-BIO, 2004. <a href="classOpenMS_1_1ims_1_1IntegerMassDecomposer.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ims_1_1MassDecomposer.html">MassDecomposer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">An inteface to handle decomposing of integer values/masses over a set of integer weights (alphabet). <a href="classOpenMS_1_1ims_1_1MassDecomposer.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ims_1_1RealMassDecomposer.html">RealMassDecomposer</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Handles decomposing of non-integer values/masses over a set of non-integer weights with an error allowed. <a href="classOpenMS_1_1ims_1_1RealMassDecomposer.html#details">More...</a><br/></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1ims_1_1Weights.html">Weights</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">Represents a set of weights (double values and scaled with a certain precision their integer counterparts) with a quick access. <a href="classOpenMS_1_1ims_1_1Weights.html#details">More...</a><br/></td></tr>
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</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
Functions</h2></td></tr>
<tr class="memitem:a98ad29ea6eda375e52432d546bdd9a48"><td class="memItemLeft" align="right" valign="top">std::ostream & </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS_1_1ims.html#a98ad29ea6eda375e52432d546bdd9a48">operator<<</a> (std::ostream &os, const <a class="el" href="classOpenMS_1_1ims_1_1IMSAlphabet.html">IMSAlphabet</a> &alphabet)</td></tr>
<tr class="separator:a98ad29ea6eda375e52432d546bdd9a48"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a794461a38c014cfbe0d0abae1b2d4c52"><td class="memItemLeft" align="right" valign="top">std::ostream & </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS_1_1ims.html#a794461a38c014cfbe0d0abae1b2d4c52">operator<<</a> (std::ostream &os, const <a class="el" href="classOpenMS_1_1ims_1_1IMSElement.html">IMSElement</a> &element)</td></tr>
<tr class="separator:a794461a38c014cfbe0d0abae1b2d4c52"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ab8bc54ab1da86f5e6680750bc1862ec4"><td class="memItemLeft" align="right" valign="top">std::ostream & </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS_1_1ims.html#ab8bc54ab1da86f5e6680750bc1862ec4">operator<<</a> (std::ostream &os, const <a class="el" href="classOpenMS_1_1ims_1_1IMSIsotopeDistribution.html">IMSIsotopeDistribution</a> &distribution)</td></tr>
<tr class="separator:ab8bc54ab1da86f5e6680750bc1862ec4"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a5402454b841f3950a873efa085e54bf8"><td class="memItemLeft" align="right" valign="top">std::ostream & </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenMS_1_1ims.html#a5402454b841f3950a873efa085e54bf8">operator<<</a> (std::ostream &os, const <a class="el" href="classOpenMS_1_1ims_1_1Weights.html">Weights</a> &weights)</td></tr>
<tr class="separator:a5402454b841f3950a873efa085e54bf8"><td class="memSeparator" colspan="2"> </td></tr>
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<h2 class="groupheader">Function Documentation</h2>
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<td class="memname">std::ostream& OpenMS::ims::operator<< </td>
<td>(</td>
<td class="paramtype">std::ostream & </td>
<td class="paramname"><em>os</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const Weights & </td>
<td class="paramname"><em>weights</em> </td>
</tr>
<tr>
<td></td>
<td>)</td>
<td></td><td></td>
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</div><div class="memdoc">
<p>Prints weights to the stream <code>os</code>.</p>
<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">os</td><td>Output stream to which weights are written. </td></tr>
<tr><td class="paramname">weights</td><td><a class="el" href="classOpenMS_1_1ims_1_1Weights.html" title="Represents a set of weights (double values and scaled with a certain precision their integer counterp...">Weights</a> to be written. </td></tr>
</table>
</dd>
</dl>
</div>
</div>
<a class="anchor" id="a794461a38c014cfbe0d0abae1b2d4c52"></a>
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<td class="memname">std::ostream& OpenMS::ims::operator<< </td>
<td>(</td>
<td class="paramtype">std::ostream & </td>
<td class="paramname"><em>os</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const IMSElement & </td>
<td class="paramname"><em>element</em> </td>
</tr>
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<td></td>
<td>)</td>
<td></td><td></td>
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<p>Prints element to the stream <code>os</code>.</p>
<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">os</td><td>Output stream to which element is printed out. </td></tr>
<tr><td class="paramname">element</td><td><a class="el" href="classOpenMS_1_1Element.html" title="Representation of an element. ">Element</a> to be printed out. </td></tr>
</table>
</dd>
</dl>
</div>
</div>
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<td class="memname">std::ostream& OpenMS::ims::operator<< </td>
<td>(</td>
<td class="paramtype">std::ostream & </td>
<td class="paramname"><em>os</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const IMSIsotopeDistribution & </td>
<td class="paramname"><em>distribution</em> </td>
</tr>
<tr>
<td></td>
<td>)</td>
<td></td><td></td>
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<p>Prints isotope distribution to the stream <code>os</code>.</p>
<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">os</td><td>Output stream to which distribution is printed out. </td></tr>
<tr><td class="paramname">distribution</td><td>Distribution to be printed out. </td></tr>
</table>
</dd>
</dl>
</div>
</div>
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<td class="memname">std::ostream& OpenMS::ims::operator<< </td>
<td>(</td>
<td class="paramtype">std::ostream & </td>
<td class="paramname"><em>os</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">const IMSAlphabet & </td>
<td class="paramname"><em>alphabet</em> </td>
</tr>
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<td></td>
<td>)</td>
<td></td><td></td>
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<p>Prints alphabet to the stream <code>os</code>.</p>
<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">os</td><td>Output stream to which alphabet is written </td></tr>
<tr><td class="paramname">alphabet</td><td>Alphabet to be written. </td></tr>
</table>
</dd>
</dl>
</div>
</div>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:37 using doxygen 1.8.5</font></TD>
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