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<TITLE>FeatureFinderAlgorithmPickedHelperStructs::MassTraces&lt; PeakType &gt; Struct Template Reference</TITLE>
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<p>Helper struct for a collection of mass traces used in <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html" title="FeatureFinderAlgorithm for picked peaks. ">FeatureFinderAlgorithmPicked</a>.  
 <a href="structOpenMS_1_1FeatureFinderAlgorithmPickedHelperStructs_1_1MassTraces.html#details">More...</a></p>

<p><code>#include &lt;<a class="el" href="FeatureFinderAlgorithmPickedHelperStructs_8h_source.html">OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPickedHelperStructs.h</a>&gt;</code></p>
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Inheritance diagram for FeatureFinderAlgorithmPickedHelperStructs::MassTraces&lt; PeakType &gt;:</div>
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  <img src="structOpenMS_1_1FeatureFinderAlgorithmPickedHelperStructs_1_1MassTraces.png" usemap="#FeatureFinderAlgorithmPickedHelperStructs::MassTraces&lt; PeakType &gt;_map" alt=""/>
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<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:ac95e5275b214e4ba06718f1efdcc0cca"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1FeatureFinderAlgorithmPickedHelperStructs_1_1MassTraces.html#ac95e5275b214e4ba06718f1efdcc0cca">MassTraces</a> ()</td></tr>
<tr class="memdesc:ac95e5275b214e4ba06718f1efdcc0cca"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructor.  <a href="#ac95e5275b214e4ba06718f1efdcc0cca">More...</a><br/></td></tr>
<tr class="separator:ac95e5275b214e4ba06718f1efdcc0cca"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a34c827b6d53a8c171b233332bfe4d634"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1FeatureFinderAlgorithmPickedHelperStructs_1_1MassTraces.html#a34c827b6d53a8c171b233332bfe4d634">getPeakCount</a> () const </td></tr>
<tr class="memdesc:a34c827b6d53a8c171b233332bfe4d634"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns the peak count of all traces.  <a href="#a34c827b6d53a8c171b233332bfe4d634">More...</a><br/></td></tr>
<tr class="separator:a34c827b6d53a8c171b233332bfe4d634"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a7e409d85407a4cfbc76fdc4aac06f185"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1FeatureFinderAlgorithmPickedHelperStructs_1_1MassTraces.html#a7e409d85407a4cfbc76fdc4aac06f185">isValid</a> (<a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> seed_mz, <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> trace_tolerance)</td></tr>
<tr class="memdesc:a7e409d85407a4cfbc76fdc4aac06f185"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if still valid (seed still contained and enough traces)  <a href="#a7e409d85407a4cfbc76fdc4aac06f185">More...</a><br/></td></tr>
<tr class="separator:a7e409d85407a4cfbc76fdc4aac06f185"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:abd839e76d16452338866dd6bf6290c72"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1FeatureFinderAlgorithmPickedHelperStructs_1_1MassTraces.html#abd839e76d16452338866dd6bf6290c72">getTheoreticalmaxPosition</a> () const </td></tr>
<tr class="memdesc:abd839e76d16452338866dd6bf6290c72"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns the theoretical maximum trace index.  <a href="#abd839e76d16452338866dd6bf6290c72">More...</a><br/></td></tr>
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<tr class="memitem:ac342b58a6d6d5e6fae39d3300c37178d"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1FeatureFinderAlgorithmPickedHelperStructs_1_1MassTraces.html#ac342b58a6d6d5e6fae39d3300c37178d">updateBaseline</a> ()</td></tr>
<tr class="memdesc:ac342b58a6d6d5e6fae39d3300c37178d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets the baseline to the lowest contained peak of the trace.  <a href="#ac342b58a6d6d5e6fae39d3300c37178d">More...</a><br/></td></tr>
<tr class="separator:ac342b58a6d6d5e6fae39d3300c37178d"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:adee689cac2b64d7164dbfc3d48110d91"><td class="memItemLeft" align="right" valign="top">std::pair&lt; <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a>, <a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1FeatureFinderAlgorithmPickedHelperStructs_1_1MassTraces.html#adee689cac2b64d7164dbfc3d48110d91">getRTBounds</a> () const </td></tr>
<tr class="memdesc:adee689cac2b64d7164dbfc3d48110d91"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns the RT boundaries of the mass traces.  <a href="#adee689cac2b64d7164dbfc3d48110d91">More...</a><br/></td></tr>
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Public Attributes</h2></td></tr>
<tr class="memitem:ac71f27c40d35a3658e5753647c3e63ca"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1FeatureFinderAlgorithmPickedHelperStructs_1_1MassTraces.html#ac71f27c40d35a3658e5753647c3e63ca">max_trace</a></td></tr>
<tr class="memdesc:ac71f27c40d35a3658e5753647c3e63ca"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum intensity trace.  <a href="#ac71f27c40d35a3658e5753647c3e63ca">More...</a><br/></td></tr>
<tr class="separator:ac71f27c40d35a3658e5753647c3e63ca"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:acb405e09b194cb848140c99da3d6c34b"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1FeatureFinderAlgorithmPickedHelperStructs_1_1MassTraces.html#acb405e09b194cb848140c99da3d6c34b">baseline</a></td></tr>
<tr class="memdesc:acb405e09b194cb848140c99da3d6c34b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Estimated baseline in the region of the feature (used for the fit)  <a href="#acb405e09b194cb848140c99da3d6c34b">More...</a><br/></td></tr>
<tr class="separator:acb405e09b194cb848140c99da3d6c34b"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pub_attribs_classstd_1_1vector"><td colspan="2" onclick="javascript:toggleInherit('pub_attribs_classstd_1_1vector')"><img src="closed.png" alt="-"/>&#160;Public Attributes inherited from <a class="el" href="classstd_1_1vector.html">vector&lt; T &gt;</a></td></tr>
<tr class="memitem:af400dbe3fe1572c567f882190c772196 inherit pub_attribs_classstd_1_1vector"><td class="memItemLeft" align="right" valign="top">T&#160;</td><td class="memItemRight" valign="bottom"><b>elements</b></td></tr>
<tr class="memdesc:af400dbe3fe1572c567f882190c772196 inherit pub_attribs_classstd_1_1vector"><td class="mdescLeft">&#160;</td><td class="mdescRight">STL member.  <a href="#af400dbe3fe1572c567f882190c772196">More...</a><br/></td></tr>
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><h3>template&lt;class PeakType&gt;<br/>
struct OpenMS::FeatureFinderAlgorithmPickedHelperStructs::MassTraces&lt; PeakType &gt;</h3>

<p>Helper struct for a collection of mass traces used in <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html" title="FeatureFinderAlgorithm for picked peaks. ">FeatureFinderAlgorithmPicked</a>. </p>
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<p>Constructor. </p>

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          <td class="memname"><a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> getPeakCount </td>
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<p>Returns the peak count of all traces. </p>

<p>References <a class="el" href="group__MathFunctionsStatistics.html#ga55edf7ee469b3d635c367d9c83fe87f5">OpenMS::Math::sum()</a>.</p>

<p>Referenced by <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#aef59aef1baf90c9ea2376d677c9bf79d">FeatureFinderAlgorithmPicked&lt; PeakType, FeatureType &gt;::checkFeatureQuality_()</a>, <a class="el" href="classOpenMS_1_1TraceFitter.html#a69d24e3ee5021aebcec9f61015fb5313">TraceFitter&lt; PeakType &gt;::optimize_()</a>, and <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#ad608d4f3d2a370fe2c1672c7818146b4">FeatureFinderAlgorithmPicked&lt; PeakType, FeatureType &gt;::writeFeatureDebugInfo_()</a>.</p>

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<p>Returns the RT boundaries of the mass traces. </p>
<dl class="exception"><dt>Exceptions</dt><dd>
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    <tr><td class="paramname"><a class="el" href="classOpenMS_1_1Exception_1_1Precondition.html" title="Precondition failed exception. ">Exception::Precondition</a></td><td>is thrown if there are no mass traces (not only in debug mode) </td></tr>
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<p>Referenced by <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#aef59aef1baf90c9ea2376d677c9bf79d">FeatureFinderAlgorithmPicked&lt; PeakType, FeatureType &gt;::checkFeatureQuality_()</a>.</p>

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<p>Returns the theoretical maximum trace index. </p>
<dl class="exception"><dt>Exceptions</dt><dd>
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    <tr><td class="paramname"><a class="el" href="classOpenMS_1_1Exception_1_1Precondition.html" title="Precondition failed exception. ">Exception::Precondition</a></td><td>is thrown if there are not mass traces (not only in debug mode) </td></tr>
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<p>Referenced by <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a72fcb26a14f6beb1c3fbace9ab3e7dbb">FeatureFinderAlgorithmPicked&lt; PeakType, FeatureType &gt;::run()</a>.</p>

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          <td class="paramname"><em>seed_mz</em>, </td>
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<p>Checks if still valid (seed still contained and enough traces) </p>

<p>Referenced by <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#aef59aef1baf90c9ea2376d677c9bf79d">FeatureFinderAlgorithmPicked&lt; PeakType, FeatureType &gt;::checkFeatureQuality_()</a>, and <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a72fcb26a14f6beb1c3fbace9ab3e7dbb">FeatureFinderAlgorithmPicked&lt; PeakType, FeatureType &gt;::run()</a>.</p>

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<p>Sets the baseline to the lowest contained peak of the trace. </p>

<p>Referenced by <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a72fcb26a14f6beb1c3fbace9ab3e7dbb">FeatureFinderAlgorithmPicked&lt; PeakType, FeatureType &gt;::run()</a>.</p>

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          <td class="memname"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a> baseline</td>
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<p>Estimated baseline in the region of the feature (used for the fit) </p>

<p>Referenced by <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#aef59aef1baf90c9ea2376d677c9bf79d">FeatureFinderAlgorithmPicked&lt; PeakType, FeatureType &gt;::checkFeatureQuality_()</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a1f44db8f9a5426ed4be51833385f5d6a">FeatureFinderAlgorithmPicked&lt; PeakType, FeatureType &gt;::cropFeature_()</a>, <a class="el" href="classOpenMS_1_1GaussTraceFitter.html#a27af5678c8951895a47f28421bbfbbdf">GaussTraceFitter&lt; PeakType &gt;::residual_()</a>, <a class="el" href="classOpenMS_1_1EGHTraceFitter.html#a27af5678c8951895a47f28421bbfbbdf">EGHTraceFitter&lt; PeakType &gt;::residual_()</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a72fcb26a14f6beb1c3fbace9ab3e7dbb">FeatureFinderAlgorithmPicked&lt; PeakType, FeatureType &gt;::run()</a>, <a class="el" href="classOpenMS_1_1GaussTraceFitter.html#ab72ddfa388b35ef3e76649c7215047a3">GaussTraceFitter&lt; PeakType &gt;::setInitialParameters_()</a>, <a class="el" href="classOpenMS_1_1EGHTraceFitter.html#ab72ddfa388b35ef3e76649c7215047a3">EGHTraceFitter&lt; PeakType &gt;::setInitialParameters_()</a>, and <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#ad608d4f3d2a370fe2c1672c7818146b4">FeatureFinderAlgorithmPicked&lt; PeakType, FeatureType &gt;::writeFeatureDebugInfo_()</a>.</p>

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          <td class="memname"><a class="el" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> max_trace</td>
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<p>Maximum intensity trace. </p>

<p>Referenced by <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a1f44db8f9a5426ed4be51833385f5d6a">FeatureFinderAlgorithmPicked&lt; PeakType, FeatureType &gt;::cropFeature_()</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a00f443c46b1d9f3485ef02d844b2433d">FeatureFinderAlgorithmPicked&lt; PeakType, FeatureType &gt;::extendMassTraces_()</a>, <a class="el" href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html#a72fcb26a14f6beb1c3fbace9ab3e7dbb">FeatureFinderAlgorithmPicked&lt; PeakType, FeatureType &gt;::run()</a>, <a class="el" href="classOpenMS_1_1GaussTraceFitter.html#ab72ddfa388b35ef3e76649c7215047a3">GaussTraceFitter&lt; PeakType &gt;::setInitialParameters_()</a>, and <a class="el" href="classOpenMS_1_1EGHTraceFitter.html#ab72ddfa388b35ef3e76649c7215047a3">EGHTraceFitter&lt; PeakType &gt;::setInitialParameters_()</a>.</p>

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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:34 using doxygen 1.8.5</font></TD>
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