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<TITLE>FeatureFinderDefs Struct Reference</TITLE>
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<li class="navelem"><a class="el" href="namespaceOpenMS.html">OpenMS</a></li><li class="navelem"><a class="el" href="structOpenMS_1_1FeatureFinderDefs.html">FeatureFinderDefs</a></li> </ul>
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<div class="title">FeatureFinderDefs Struct Reference</div> </div>
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<p>The purpose of this struct is to provide definitions of classes and typedefs which are used throughout all <a class="el" href="classOpenMS_1_1FeatureFinder.html" title="The main feature finder class. ">FeatureFinder</a> classes.
<a href="structOpenMS_1_1FeatureFinderDefs.html#details">More...</a></p>
<p><code>#include <<a class="el" href="FeatureFinderDefs_8h_source.html">OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderDefs.h</a>></code></p>
<div class="dynheader">
Inheritance diagram for FeatureFinderDefs:</div>
<div class="dyncontent">
<div class="center">
<img src="structOpenMS_1_1FeatureFinderDefs.png" usemap="#FeatureFinderDefs_map" alt=""/>
<map id="FeatureFinderDefs_map" name="FeatureFinderDefs_map">
<area href="classOpenMS_1_1FeatureFinder.html" title="The main feature finder class. " alt="FeatureFinder" shape="rect" coords="363,56,716,80"/>
<area href="classOpenMS_1_1FeatureFinderAlgorithmMRM.html" title="FeatureFinderAlgorithm for MRM experiments. " alt="FeatureFinderAlgorithmMRM< PeakType, FeatureType >" shape="rect" coords="363,112,716,136"/>
<area href="classOpenMS_1_1FeatureFinderAlgorithmPicked.html" title="FeatureFinderAlgorithm for picked peaks. " alt="FeatureFinderAlgorithmPicked< PeakType, FeatureType >" shape="rect" coords="363,168,716,192"/>
<area href="classOpenMS_1_1FeatureFinderAlgorithmSH.html" title="The Superhirn FeatureFinderAlgorithm. " alt="FeatureFinderAlgorithmSH< PeakType, FeatureType >" shape="rect" coords="363,224,716,248"/>
<area href="classOpenMS_1_1FeatureFinderAlgorithmSimple.html" title="FeatureFinderAlgorithm implementation using the Simple* modules. " alt="FeatureFinderAlgorithmSimple< PeakType, FeatureType >" shape="rect" coords="363,280,716,304"/>
<area href="classOpenMS_1_1FeatureFinderAlgorithmSimplest.html" title="FeatureFinderAlgorithm implementation using the Simple* modules. " alt="FeatureFinderAlgorithmSimplest< PeakType, FeatureType >" shape="rect" coords="363,336,716,360"/>
<area href="classOpenMS_1_1Fitter1D.html" title="Abstract base class for all 1D-dimensional model fitter. " alt="Fitter1D" shape="rect" coords="363,392,716,416"/>
<area href="classOpenMS_1_1ModelFitter.html" title="Tests a group of data points in an LC-MS map for goodness-of-fit with a 2D averagine model..." alt="ModelFitter< PeakType, FeatureType >" shape="rect" coords="363,448,716,472"/>
<area href="classOpenMS_1_1SimpleExtender.html" title="Simple feature extension algorithm. " alt="SimpleExtender< PeakType, FeatureType >" shape="rect" coords="363,504,716,528"/>
<area href="classOpenMS_1_1SimpleSeeder.html" title="Simple seeding class that uses the strongest peak as next seed. " alt="SimpleSeeder< PeakType, FeatureType >" shape="rect" coords="363,560,716,584"/>
</map>
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<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
Classes</h2></td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenMS_1_1FeatureFinderDefs_1_1NoSuccessor.html">NoSuccessor</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="namespaceOpenMS_1_1Exception.html" title="Exception namespace ">Exception</a> that is thrown if a method an invalid IndexPair is given. <a href="classOpenMS_1_1FeatureFinderDefs_1_1NoSuccessor.html#details">More...</a><br/></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-types"></a>
Public Types</h2></td></tr>
<tr class="memitem:a3f3de3e0d751949b8d0b60ffb302944a"><td class="memItemLeft" align="right" valign="top">enum  </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#a3f3de3e0d751949b8d0b60ffb302944a">Flag</a> { <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#a3f3de3e0d751949b8d0b60ffb302944aaa09b651ef326a9d8efcee5cc5b720ab4">UNUSED</a>,
<a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#a3f3de3e0d751949b8d0b60ffb302944aa1e780c62cb3fd2edcac39f739bbe6f6c">USED</a>
}</td></tr>
<tr class="memdesc:a3f3de3e0d751949b8d0b60ffb302944a"><td class="mdescLeft"> </td><td class="mdescRight">Flags that indicate if a peak is already used in a feature. <a href="structOpenMS_1_1FeatureFinderDefs.html#a3f3de3e0d751949b8d0b60ffb302944a">More...</a><br/></td></tr>
<tr class="separator:a3f3de3e0d751949b8d0b60ffb302944a"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aaee0bfd850887fdc58115cead9e9b8b9"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="structOpenMS_1_1IsotopeCluster.html#a0cab124671a3ada269f0553e1c8934da">IsotopeCluster::IndexPair</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#aaee0bfd850887fdc58115cead9e9b8b9">IndexPair</a></td></tr>
<tr class="memdesc:aaee0bfd850887fdc58115cead9e9b8b9"><td class="mdescLeft"> </td><td class="mdescRight">Index to peak consisting of two UInts (scan index / peak index) <a href="#aaee0bfd850887fdc58115cead9e9b8b9">More...</a><br/></td></tr>
<tr class="separator:aaee0bfd850887fdc58115cead9e9b8b9"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:af01a99958d0b18999737158daf8820ac"><td class="memItemLeft" align="right" valign="top">typedef <br class="typebreak"/>
<a class="el" href="structOpenMS_1_1IsotopeCluster_1_1ChargedIndexSet.html">IsotopeCluster::ChargedIndexSet</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#af01a99958d0b18999737158daf8820ac">ChargedIndexSet</a></td></tr>
<tr class="memdesc:af01a99958d0b18999737158daf8820ac"><td class="mdescLeft"> </td><td class="mdescRight">Index to peak consisting of two UInts (scan index / peak index) with charge information. <a href="#af01a99958d0b18999737158daf8820ac">More...</a><br/></td></tr>
<tr class="separator:af01a99958d0b18999737158daf8820ac"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:af7439235b89a75354a2e87350e36834f"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="structOpenMS_1_1IsotopeCluster.html#aed4049efd4228c847ab300ac4c466eca">IsotopeCluster::IndexSet</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#af7439235b89a75354a2e87350e36834f">IndexSet</a></td></tr>
<tr class="memdesc:af7439235b89a75354a2e87350e36834f"><td class="mdescLeft"> </td><td class="mdescRight">A set of peak indices. <a href="#af7439235b89a75354a2e87350e36834f">More...</a><br/></td></tr>
<tr class="separator:af7439235b89a75354a2e87350e36834f"><td class="memSeparator" colspan="2"> </td></tr>
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>The purpose of this struct is to provide definitions of classes and typedefs which are used throughout all <a class="el" href="classOpenMS_1_1FeatureFinder.html" title="The main feature finder class. ">FeatureFinder</a> classes. </p>
</div><h2 class="groupheader">Member Typedef Documentation</h2>
<a class="anchor" id="af01a99958d0b18999737158daf8820ac"></a>
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<td class="memname">typedef <a class="el" href="structOpenMS_1_1IsotopeCluster_1_1ChargedIndexSet.html">IsotopeCluster::ChargedIndexSet</a> <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#af01a99958d0b18999737158daf8820ac">ChargedIndexSet</a></td>
</tr>
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</div><div class="memdoc">
<p>Index to peak consisting of two UInts (scan index / peak index) with charge information. </p>
</div>
</div>
<a class="anchor" id="aaee0bfd850887fdc58115cead9e9b8b9"></a>
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<table class="memname">
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<td class="memname">typedef <a class="el" href="structOpenMS_1_1IsotopeCluster.html#a0cab124671a3ada269f0553e1c8934da">IsotopeCluster::IndexPair</a> <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#aaee0bfd850887fdc58115cead9e9b8b9">IndexPair</a></td>
</tr>
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</div><div class="memdoc">
<p>Index to peak consisting of two UInts (scan index / peak index) </p>
</div>
</div>
<a class="anchor" id="af7439235b89a75354a2e87350e36834f"></a>
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<td class="memname">typedef <a class="el" href="structOpenMS_1_1IsotopeCluster.html#aed4049efd4228c847ab300ac4c466eca">IsotopeCluster::IndexSet</a> <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#af7439235b89a75354a2e87350e36834f">IndexSet</a></td>
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</div><div class="memdoc">
<p>A set of peak indices. </p>
</div>
</div>
<h2 class="groupheader">Member Enumeration Documentation</h2>
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<td class="memname">enum <a class="el" href="structOpenMS_1_1FeatureFinderDefs.html#a3f3de3e0d751949b8d0b60ffb302944a">Flag</a></td>
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<p>Flags that indicate if a peak is already used in a feature. </p>
<table class="fieldtable">
<tr><th colspan="2">Enumerator</th></tr><tr><td class="fieldname"><em><a class="anchor" id="a3f3de3e0d751949b8d0b60ffb302944aaa09b651ef326a9d8efcee5cc5b720ab4"></a>UNUSED</em> </td><td class="fielddoc">
</td></tr>
<tr><td class="fieldname"><em><a class="anchor" id="a3f3de3e0d751949b8d0b60ffb302944aa1e780c62cb3fd2edcac39f739bbe6f6c"></a>USED</em> </td><td class="fielddoc">
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:34 using doxygen 1.8.5</font></TD>
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