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<p>Class for the penalty factors used during the optimization.  
 <a href="structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactorsIntensity.html#details">More...</a></p>

<p><code>#include &lt;<a class="el" href="OptimizePeakDeconvolution_8h_source.html">OpenMS/TRANSFORMATIONS/RAW2PEAK/OptimizePeakDeconvolution.h</a>&gt;</code></p>
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Inheritance diagram for PenaltyFactorsIntensity:</div>
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Public Member Functions</h2></td></tr>
<tr class="memitem:a5b66388814c059aaec8d6eeda3df3d2e"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactorsIntensity.html#a5b66388814c059aaec8d6eeda3df3d2e">PenaltyFactorsIntensity</a> ()</td></tr>
<tr class="separator:a5b66388814c059aaec8d6eeda3df3d2e"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aba5315f3df88767f76e619b759351a15"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactorsIntensity.html#aba5315f3df88767f76e619b759351a15">PenaltyFactorsIntensity</a> (const <a class="el" href="structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactorsIntensity.html">PenaltyFactorsIntensity</a> &amp;p)</td></tr>
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<tr class="memitem:a51a8354251e6d8a3645819f09bd9d6ce"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactorsIntensity.html">PenaltyFactorsIntensity</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactorsIntensity.html#a51a8354251e6d8a3645819f09bd9d6ce">operator=</a> (const <a class="el" href="structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactorsIntensity.html">PenaltyFactorsIntensity</a> &amp;p)</td></tr>
<tr class="separator:a51a8354251e6d8a3645819f09bd9d6ce"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aa27cf62a260fdd78c82a41571981c124"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactorsIntensity.html#aa27cf62a260fdd78c82a41571981c124">~PenaltyFactorsIntensity</a> ()</td></tr>
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<tr class="inherit_header pub_methods_structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactors"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactors')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactors.html">PenaltyFactors</a></td></tr>
<tr class="memitem:ab17f5ae37b7817df4c3479ebfa6f3f48 inherit pub_methods_structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactors"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactors.html#ab17f5ae37b7817df4c3479ebfa6f3f48">PenaltyFactors</a> ()</td></tr>
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<tr class="memitem:ae2acb9d1e3e0cd8ac48b11e58974aca0 inherit pub_methods_structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactors"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactors.html#ae2acb9d1e3e0cd8ac48b11e58974aca0">PenaltyFactors</a> (const <a class="el" href="structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactors.html">PenaltyFactors</a> &amp;p)</td></tr>
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<tr class="memitem:ad586941d523262bc710038ecb19af79e inherit pub_methods_structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactors"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactors.html">PenaltyFactors</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactors.html#ad586941d523262bc710038ecb19af79e">operator=</a> (const <a class="el" href="structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactors.html">PenaltyFactors</a> &amp;p)</td></tr>
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<tr class="memitem:ae89675bc0b01641aeece694576987c77 inherit pub_methods_structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactors"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactors.html#ae89675bc0b01641aeece694576987c77">~PenaltyFactors</a> ()</td></tr>
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Public Attributes</h2></td></tr>
<tr class="memitem:a5343d7f469d61e6d3f4808a609094175"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Concept.html#gace75bfb1aba684e874dffee13738bd15">DoubleReal</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactorsIntensity.html#a5343d7f469d61e6d3f4808a609094175">height</a></td></tr>
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<tr class="inherit_header pub_attribs_structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactors"><td colspan="2" onclick="javascript:toggleInherit('pub_attribs_structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactors')"><img src="closed.png" alt="-"/>&#160;Public Attributes inherited from <a class="el" href="structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactors.html">PenaltyFactors</a></td></tr>
<tr class="memitem:a5e9dd75fc35bca3ebe4981821077aebe inherit pub_attribs_structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactors"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classdouble.html">double</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactors.html#a5e9dd75fc35bca3ebe4981821077aebe">pos</a></td></tr>
<tr class="memdesc:a5e9dd75fc35bca3ebe4981821077aebe inherit pub_attribs_structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactors"><td class="mdescLeft">&#160;</td><td class="mdescRight">Penalty factor for the peak shape's position.  <a href="#a5e9dd75fc35bca3ebe4981821077aebe">More...</a><br/></td></tr>
<tr class="separator:a5e9dd75fc35bca3ebe4981821077aebe inherit pub_attribs_structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactors"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:abb10592f0ea83f824c0a14f4afa95be4 inherit pub_attribs_structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactors"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classdouble.html">double</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactors.html#abb10592f0ea83f824c0a14f4afa95be4">lWidth</a></td></tr>
<tr class="memdesc:abb10592f0ea83f824c0a14f4afa95be4 inherit pub_attribs_structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactors"><td class="mdescLeft">&#160;</td><td class="mdescRight">Penalty factor for the peak shape's left width parameter.  <a href="#abb10592f0ea83f824c0a14f4afa95be4">More...</a><br/></td></tr>
<tr class="separator:abb10592f0ea83f824c0a14f4afa95be4 inherit pub_attribs_structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactors"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a478a632c0b5a363e215061428eee1a1c inherit pub_attribs_structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactors"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classdouble.html">double</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactors.html#a478a632c0b5a363e215061428eee1a1c">rWidth</a></td></tr>
<tr class="memdesc:a478a632c0b5a363e215061428eee1a1c inherit pub_attribs_structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactors"><td class="mdescLeft">&#160;</td><td class="mdescRight">Penalty factor for the peak shape's right width parameter.  <a href="#a478a632c0b5a363e215061428eee1a1c">More...</a><br/></td></tr>
<tr class="separator:a478a632c0b5a363e215061428eee1a1c inherit pub_attribs_structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactors"><td class="memSeparator" colspan="2">&#160;</td></tr>
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>Class for the penalty factors used during the optimization. </p>
<p>A great deviation (squared deviation) of a peak shape's position or its left or right width parameter can be penalised. During the optimization negative heights may occur, they are penalised as well. </p>
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          <td class="paramtype">const <a class="el" href="structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactorsIntensity.html">PenaltyFactorsIntensity</a> &amp;&#160;</td>
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<h2 class="groupheader">Member Function Documentation</h2>
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<p>References <a class="el" href="structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactorsIntensity.html#a5343d7f469d61e6d3f4808a609094175">PenaltyFactorsIntensity::height</a>, <a class="el" href="structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactors.html#abb10592f0ea83f824c0a14f4afa95be4">PenaltyFactors::lWidth</a>, <a class="el" href="structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactors.html#a5e9dd75fc35bca3ebe4981821077aebe">PenaltyFactors::pos</a>, and <a class="el" href="structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactors.html#a478a632c0b5a363e215061428eee1a1c">PenaltyFactors::rWidth</a>.</p>

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<p>Referenced by <a class="el" href="structOpenMS_1_1OptimizationFunctions_1_1PenaltyFactorsIntensity.html#a51a8354251e6d8a3645819f09bd9d6ce">PenaltyFactorsIntensity::operator=()</a>, and <a class="el" href="classOpenMS_1_1TwoDOptimization.html#a165bfd792d0e5b693e0cdd6a9782d27f">TwoDOptimization::setPenalties()</a>.</p>

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