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// --------------------------------------------------------------------------
// OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2013.
//
// This software is released under a three-clause BSD license:
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of any author or any participating institution
// may be used to endorse or promote products derived from this software
// without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
// --------------------------------------------------------------------------
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// --------------------------------------------------------------------------
// $Maintainer: Hendrik Weisser $
// $Authors: Steffen Sass, Hendrik Weisser $
// --------------------------------------------------------------------------
#ifndef OPENMS_DATASTRUCTURES_GRIDFEATURE_H
#define OPENMS_DATASTRUCTURES_GRIDFEATURE_H
#include <OpenMS/KERNEL/StandardTypes.h>
#include <OpenMS/KERNEL/BaseFeature.h>
namespace OpenMS
{
/**
* @brief Representation of a feature in a hash grid.
*
* A GridFeature can be stored in a HashGrid and points to a BaseFeature (Feature or ConsensusFeature). Used for QT feature grouping (see QTClusterFinder).
*/
class OPENMS_DLLAPI GridFeature
{
private:
/// Reference to the contained feature
const BaseFeature & feature_;
/// Index of the feature map or consensus map
Size map_index_;
/// Index of the feature in the map
Size feature_index_;
/// Set of peptide sequences annotated to the feature
std::set<AASequence> annotations_;
public:
/**
* @brief Detailed constructor
* @param feature Reference to the contained feature
* @param map_index Index of the feature map or consensus map
* @param feature_index Index of the feature in the map
*/
GridFeature(const BaseFeature & feature, Size map_index, Size feature_index);
/// Returns the feature
const BaseFeature & getFeature() const;
/// Destructor
virtual ~GridFeature();
/// Returns the map index
Size getMapIndex() const;
/// Returns the feature index
Size getFeatureIndex() const;
/// Returns the ID of the GridFeature (same as the feature index)
Int getID() const;
/// Returns the set of peptide sequences annotated to the cluster center
const std::set<AASequence> & getAnnotations() const;
/// Returns the feature RT
DoubleReal getRT() const;
/// Returns the feature m/z
DoubleReal getMZ() const;
};
}
#endif // OPENMS_DATASTRUCTURES_GRIDFEATURE_H
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