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// --------------------------------------------------------------------------
// OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2013.
//
// This software is released under a three-clause BSD license:
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of any author or any participating institution
// may be used to endorse or promote products derived from this software
// without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
// --------------------------------------------------------------------------
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg$
// $Authors: Timo Sachsenberg $
// --------------------------------------------------------------------------
#ifndef OPENMS_VISUAL_TOPPVIEWIDENTIFICATIONVIEWBEHAVIOR_H
#define OPENMS_VISUAL_TOPPVIEWIDENTIFICATIONVIEWBEHAVIOR_H
#include <OpenMS/METADATA/SpectrumSettings.h>
#include <OpenMS/VISUAL/LayerData.h>
#include <vector>
#include <OpenMS/VISUAL/TOPPViewBehaviorInterface.h>
namespace OpenMS
{
class TOPPViewBase;
/**
@brief Behavior of TOPPView in identification mode.
*/
class TOPPViewIdentificationViewBehavior :
public TOPPViewBehaviorInterface
{
Q_OBJECT
///@name Type definitions
//@{
//Feature map type
typedef LayerData::FeatureMapType FeatureMapType;
//Feature map managed type
typedef LayerData::FeatureMapSharedPtrType FeatureMapSharedPtrType;
//Consensus feature map type
typedef LayerData::ConsensusMapType ConsensusMapType;
//Consensus map managed type
typedef LayerData::ConsensusMapSharedPtrType ConsensusMapSharedPtrType;
//Peak map type
typedef LayerData::ExperimentType ExperimentType;
//Main managed data type (experiment)
typedef LayerData::ExperimentSharedPtrType ExperimentSharedPtrType;
///Peak spectrum type
typedef ExperimentType::SpectrumType SpectrumType;
//@}
public:
/// Construct the behaviour with its parent
TOPPViewIdentificationViewBehavior(TOPPViewBase * parent);
public slots:
/// Behavior for showSpectraumAs1D
virtual void showSpectrumAs1D(int index);
/// Behavior for activate1DSpectrum
virtual void activate1DSpectrum(int index);
/// Behavior for activate1DSpectrum
virtual void activate1DSpectrum(std::vector<int, std::allocator<int> > indices);
/// Behavior for deactivate1DSpectrum
virtual void deactivate1DSpectrum(int index);
/// Slot for behavior activation
virtual void activateBehavior();
/// Slot for behavior deactivation
virtual void deactivateBehavior();
void setVisibleArea1D(DoubleReal l, DoubleReal h);
private:
/// Adds labels for the provided precursors to the 1D spectrum
void addPrecursorLabels1D_(const std::vector<Precursor> & pcs);
/// Removes the precursor labels for from the specified 1D spectrum
void removeTemporaryAnnotations_(Size spectrum_index);
/// Adds a theoretical spectrum as set from the preferences dialog for the peptide hit.
void addTheoreticalSpectrumLayer_(const PeptideHit & ph);
/// removes all layer with theoretical spectrum generated in identification view
void removeTheoreticalSpectrumLayer_();
private:
TOPPViewBase * tv_;
/// Used to check which annotation handles have been added automaticaly by the identification view. Ownership
/// of the AnnotationItems has the Annotation1DContainer
std::vector<Annotation1DItem *> temporary_annotations_;
};
}
#endif // OPENMS_VISUAL_TOPPVIEWIDENTIFICATIONVIEWBEHAVIOR_H
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