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## # TODO nested STL
## # void computeHighestPeptides(libcpp_vector[libcpp_vector[double] ] & peptide_site_scores, libcpp_vector[ProbablePhosphoSites] & sites, libcpp_vector[libcpp_vector[Size] ] & permutations) nogil except +
## #Computes the site determing_ions for the given AS and sequences in candidates
## void compute_site_determining_ions(libcpp_vector[MSSpectrum[RichPeak1D]] & th_spectra, ProbablePhosphoSites & candidates, Int charge, libcpp_vector[MSSpectrum[RichPeak1D]] & site_determining_ions) nogil except +
## libcpp_vector[ size_t ] computeTupel_(AASequence & without_phospho)
## # TODO nested STL
## # libcpp_vector[ libcpp_vector[ size_t ] ] computePermutations_(libcpp_vector[ size_t ] tupel, Int number_of_phospho_sites)
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