1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
|
import os
import glob
pxd_files = glob.glob("../pxds/*.pxd")
classdocu_base = "http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html"
classdocu_base = "http://www.openms.de/current_doxygen/html/"
# after how many characters should a line be wrapped
Linebreak = 85
remove_nogil = True
ignores = ["ctime", "smart_ptr", "Time"]
# Apply line break
def line_break(line):
# print "trying to break line ", line
if len(line) < Linebreak:return line
for i in reversed(range(Linebreak)):
if line[i] == " ":
break
if len(line) - i < 9: return line
if i == 0:
print "Could not break line", line
# return line
return line[:Linebreak] + "\\\n" + " "*6 + line_break(line[Linebreak:])
# print "call again with i", i, "and len ", len(line)
return line[:i] + "\\\n" + " "*6 + line_break(line[i:])
# Prepare a line for printing
def prepare_line(line):
# replace the indent from 4/8 to 2/4 -> get more space
line = line.replace(" ", "xxxx")
line = line.replace(" ", " ")
line = line.replace("xxxx", " ")
return line
def get_namespace(pxd):
filehandle = open(pxd)
fulltext = filehandle.read()
filehandle.close()
import re
match = re.search("cdef extern.*?namespace\s*\"([^\"]*)\"", fulltext)
if not match:
return "OpenMS"
else:
return match.group(1)
def get_header(title, ns):
return r"""
$\rightarrow$ \textit{\href{%s/class%s_1_1%s.html}{Link
to OpenMS documentation}}
Wrapped functions in Python:
""" % (classdocu_base, ns, title)
write_handle = open("appendix.tex", "w")
print pxd_files
for pxd in sorted(pxd_files):
# get title for latex section
title = pxd[8:-4]
if title in ignores:
continue
title = title.replace("_", "\\_")
write_handle.write("\subsection{%s}\n\n" % title)
write_handle.write("\label{%s}\n\n" % title)
# write_handle.write("{\\tiny\n \\begin{verbatim}")
write_handle.write( get_header(title, get_namespace(pxd)) )
write_handle.write("{ \\begin{verbatim}")
filehandle = open(pxd)
found_start = False
for line in filehandle:
if line.find("import") == -1 and len(line.strip() ) > 0:
found_start = True
if line.find("import") == -1 and found_start:
# print line.strip()
line = prepare_line(line)
line = line_break(line)
write_handle.write(line)
write_handle.write("\end{verbatim}\n}\n\n")
write_handle.close()
|
