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# Python script to compile Cython to C++
#
# this script compiles the *.pyx infile (pyopenms/pyopenms.pyx) to .cpp
#
# It can be run in the build process of pyopenms when manual changes to the pyx
# files need to be made (not recommended!).
#
# == taken from autowrap/Main.py run(), lower part
infile = "pyopenms/pyopenms.pyx"
import cPickle
persisted_data_path = "include_dir.bin"
autowrap_include_dirs = cPickle.load(open(persisted_data_path, "rb"))
# autowrap_include_dirs = ['/usr/local/lib/python2.7/dist-packages/autowrap/data_files/boost', '/usr/local/lib/python2.7/dist-packages/autowrap/data_files', '/path/to/pyOpenMS/pxds', 'from Map cimport Map as _Map']
from Cython.Compiler.Main import compile, CompilationOptions
from Cython.Compiler.Options import directive_defaults
directive_defaults["boundscheck"] = False
directive_defaults["wraparound"] = False
options = dict(include_path=autowrap_include_dirs,
compiler_directives=directive_defaults,
#output_dir=".",
#gdb_debug=True,
cplus=True)
print "Compiling with Cython the file", infile
print "Using include_path", autowrap_include_dirs
options = CompilationOptions(**options)
compile(infile, options=options)
print "Success!"
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