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// --------------------------------------------------------------------------
// OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2013.
//
// This software is released under a three-clause BSD license:
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of any author or any participating institution
// may be used to endorse or promote products derived from this software
// without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
// --------------------------------------------------------------------------
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// --------------------------------------------------------------------------
// $Maintainer: Andreas Bertsch $
// $Authors: Andreas Bertsch $
// --------------------------------------------------------------------------
#include <OpenMS/DATASTRUCTURES/CVMappings.h>
using namespace std;
namespace OpenMS
{
CVMappings::CVMappings()
{
}
CVMappings::CVMappings(const CVMappings & rhs) :
mapping_rules_(rhs.mapping_rules_),
cv_references_(rhs.cv_references_),
cv_references_vector_(rhs.cv_references_vector_)
{
}
CVMappings::~CVMappings()
{
}
CVMappings & CVMappings::operator=(const CVMappings & rhs)
{
if (this != &rhs)
{
mapping_rules_ = rhs.mapping_rules_;
cv_references_ = rhs.cv_references_;
cv_references_vector_ = rhs.cv_references_vector_;
}
return *this;
}
bool CVMappings::operator==(const CVMappings & rhs) const
{
return mapping_rules_ == rhs.mapping_rules_ &&
cv_references_ == rhs.cv_references_ &&
cv_references_vector_ == rhs.cv_references_vector_;
}
bool CVMappings::operator!=(const CVMappings & rhs) const
{
return !(*this == rhs);
}
void CVMappings::setMappingRules(const vector<CVMappingRule> & cv_mapping_rules)
{
mapping_rules_ = cv_mapping_rules;
}
const vector<CVMappingRule> & CVMappings::getMappingRules() const
{
return mapping_rules_;
}
void CVMappings::addMappingRule(const CVMappingRule & cv_mapping_rule)
{
mapping_rules_.push_back(cv_mapping_rule);
}
void CVMappings::setCVReferences(const vector<CVReference> & cv_references)
{
for (vector<CVReference>::const_iterator it = cv_references.begin(); it != cv_references.end(); ++it)
{
cv_references_[it->getIdentifier()] = *it;
cv_references_vector_.push_back(*it);
}
}
const vector<CVReference> & CVMappings::getCVReferences() const
{
return cv_references_vector_;
}
void CVMappings::addCVReference(const CVReference & cv_reference)
{
if (hasCVReference(cv_reference.getIdentifier()))
{
cerr << "CVMappings: Warning: CV reference with identifier '" << cv_reference.getIdentifier() << "' already existing, ignoring it!" << endl;
return;
}
cv_references_[cv_reference.getIdentifier()] = cv_reference;
cv_references_vector_.push_back(cv_reference);
}
bool CVMappings::hasCVReference(const String & identifier)
{
return cv_references_.has(identifier);
}
} // namespace OpenMS
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