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// --------------------------------------------------------------------------
// OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2013.
//
// This software is released under a three-clause BSD license:
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of any author or any participating institution
// may be used to endorse or promote products derived from this software
// without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
// --------------------------------------------------------------------------
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// --------------------------------------------------------------------------
// $Maintainer: Hendrik Weisser $
// $Authors: Steffen Sass, Hendrik Weisser $
// --------------------------------------------------------------------------
#include <OpenMS/DATASTRUCTURES/GridFeature.h>
using namespace std;
namespace OpenMS
{
GridFeature::GridFeature(const BaseFeature & feature, Size map_index,
Size feature_index) :
feature_(feature),
map_index_(map_index), feature_index_(feature_index), annotations_()
{
const vector<PeptideIdentification> & peptides =
feature.getPeptideIdentifications();
for (vector<PeptideIdentification>::const_iterator pep_it =
peptides.begin(); pep_it != peptides.end(); ++pep_it)
{
if (pep_it->getHits().empty())
continue; // shouldn't be the case
annotations_.insert(pep_it->getHits()[0].getSequence());
}
}
GridFeature::~GridFeature()
{
}
const BaseFeature & GridFeature::getFeature() const
{
return feature_;
}
Size GridFeature::getMapIndex() const
{
return map_index_;
}
Size GridFeature::getFeatureIndex() const
{
return feature_index_;
}
Int GridFeature::getID() const
{
return (Int)feature_index_;
}
const set<AASequence> & GridFeature::getAnnotations() const
{
return annotations_;
}
DoubleReal GridFeature::getRT() const
{
return feature_.getRT();
}
DoubleReal GridFeature::getMZ() const
{
return feature_.getMZ();
}
}
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