1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
|
// --------------------------------------------------------------------------
// OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2013.
//
// This software is released under a three-clause BSD license:
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of any author or any participating institution
// may be used to endorse or promote products derived from this software
// without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
// --------------------------------------------------------------------------
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// --------------------------------------------------------------------------
// $Maintainer: David Wojnar $
// $Authors: David Wojnar $
// --------------------------------------------------------------------------
#include <OpenMS/FORMAT/CsvFile.h>
#include <OpenMS/DATASTRUCTURES/StringList.h>
#include <OpenMS/CONCEPT/Exception.h>
using namespace std;
namespace OpenMS
{
CsvFile::CsvFile() :
TextFile(), itemseperator_(','), itemenclosed_(false)
{
}
CsvFile::~CsvFile()
{
}
CsvFile::CsvFile(const String & filename, char is, bool ie, Int first_n) :
TextFile(), itemseperator_(is), itemenclosed_(ie)
{
load(filename, false, first_n);
}
void CsvFile::fload(const String & filename, char is, bool ie, Int first_n)
{
itemseperator_ = is;
itemenclosed_ = ie;
load(filename, true, first_n);
}
bool CsvFile::getRow(Size row, StringList & list)
{
if (row > this->size())
{
throw Exception::InvalidIterator(__FILE__, __LINE__, __PRETTY_FUNCTION__);
}
bool splitted = this->operator[](row).split(itemseperator_, list);
if (!splitted)
{
return splitted;
}
for (Size i = 0; i < list.size(); i++)
{
if (itemenclosed_)
{
list[i] = list[i].substr(1, list[i].size() - 2);
}
}
return true;
}
} // namespace OpenMS
|
