1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
|
// --------------------------------------------------------------------------
// OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2013.
//
// This software is released under a three-clause BSD license:
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of any author or any participating institution
// may be used to endorse or promote products derived from this software
// without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
// --------------------------------------------------------------------------
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// --------------------------------------------------------------------------
// $Maintainer: Sandro Andreotti $
// $Authors: Andreas Bertsch $
// --------------------------------------------------------------------------
#include <OpenMS/CONCEPT/ClassTest.h>
///////////////////////////
#include <OpenMS/ANALYSIS/DENOVO/CompNovoIdentificationBase.h>
///////////////////////////
using namespace OpenMS;
using namespace std;
START_TEST(CompNovoIdentificationBase, "$Id: CompNovoIdentificationBase_test.C 10915 2013-04-04 20:14:57Z aiche $")
/////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////
START_SECTION(CompNovoIdentificationBase())
{
NOT_TESTABLE
}
END_SECTION
START_SECTION((CompNovoIdentificationBase(const CompNovoIdentificationBase &source)))
{
NOT_TESTABLE
}
END_SECTION
START_SECTION((virtual ~CompNovoIdentificationBase()))
{
NOT_TESTABLE
}
END_SECTION
START_SECTION((virtual void getIdentifications(std::vector< PeptideIdentification > &ids, const PeakMap &exp)=0))
{
NOT_TESTABLE
}
END_SECTION
START_SECTION((CompNovoIdentificationBase& operator=(const CompNovoIdentificationBase &source)))
{
NOT_TESTABLE
}
END_SECTION
std::set<String>str_set;
str_set.insert("TESTSTRING");
std::set<String>::const_iterator it = str_set.begin();
START_SECTION([CompNovoIdentificationBase::Permut] Permut(const std::set< String >::const_iterator &permut, DoubleReal s))
CompNovoIdentificationBase::Permut perm(it, 50.0);
TEST_EQUAL(perm.getScore(), 50.0)
TEST_EQUAL(*perm.getPermut(), "TESTSTRING")
END_SECTION
START_SECTION([CompNovoIdentificationBase::Permut] Permut(const Permut &rhs))
CompNovoIdentificationBase::Permut perm(it, 50.0);
CompNovoIdentificationBase::Permut copy(perm);
TEST_EQUAL(perm.getScore(), copy.getScore())
TEST_EQUAL(*perm.getPermut(), *copy.getPermut())
END_SECTION
START_SECTION([CompNovoIdentificationBase::Permut] Permut& operator=(const Permut &rhs))
CompNovoIdentificationBase::Permut perm(it, 50.0);
CompNovoIdentificationBase::Permut copy(it, 0.0);
copy=perm;
TEST_EQUAL(perm.getScore(), copy.getScore())
END_SECTION
START_SECTION([CompNovoIdentificationBase::Permut] virtual ~Permut())
CompNovoIdentificationBase::Permut * ptr = new CompNovoIdentificationBase::Permut(it, 50.0);
delete ptr;
END_SECTION
START_SECTION([CompNovoIdentificationBase::Permut] void setPermut(const std::set< String >::const_iterator &it))
std::set<String>str_set;
str_set.insert("zero");
std::set<String>::const_iterator it_zero = str_set.begin();
CompNovoIdentificationBase::Permut perm(it_zero, 50.0);
perm.setPermut(it);
TEST_EQUAL(*perm.getPermut(), "TESTSTRING");
END_SECTION
START_SECTION([CompNovoIdentificationBase::Permut] void setScore(DoubleReal score))
CompNovoIdentificationBase::Permut perm(it, 50.0);
perm.setScore(0.0);
TEST_EQUAL(perm.getScore(), 0.0)
END_SECTION
START_SECTION([CompNovoIdentificationBase::Permut] DoubleReal getScore() const)
NOT_TESTABLE //already tested above
END_SECTION
START_SECTION([CompNovoIdentificationBase::Permut] const std::set<String>::const_iterator& getPermut() const)
NOT_TESTABLE //already tested above
END_SECTION
/////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////
END_TEST
|
