File: CsvFile_test.C

package info (click to toggle)
openms 1.11.1-5
  • links: PTS, VCS
  • area: main
  • in suites: jessie, jessie-kfreebsd
  • size: 436,688 kB
  • ctags: 150,907
  • sloc: cpp: 387,126; xml: 71,547; python: 7,764; ansic: 2,626; php: 2,499; sql: 737; ruby: 342; sh: 325; makefile: 128
file content (114 lines) | stat: -rw-r--r-- 4,344 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
// --------------------------------------------------------------------------
//                   OpenMS -- Open-Source Mass Spectrometry               
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2013.
// 
// This software is released under a three-clause BSD license:
//  * Redistributions of source code must retain the above copyright
//    notice, this list of conditions and the following disclaimer.
//  * Redistributions in binary form must reproduce the above copyright
//    notice, this list of conditions and the following disclaimer in the
//    documentation and/or other materials provided with the distribution.
//  * Neither the name of any author or any participating institution 
//    may be used to endorse or promote products derived from this software 
//    without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS. 
// --------------------------------------------------------------------------
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING 
// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, 
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, 
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; 
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, 
// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR 
// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF 
// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
// 
// --------------------------------------------------------------------------
// $Maintainer: David Wojnar $
// $Authors: David Wojnar $
// --------------------------------------------------------------------------

#include <OpenMS/CONCEPT/ClassTest.h>

///////////////////////////

#include <OpenMS/FORMAT/CsvFile.h>
#include <OpenMS/DATASTRUCTURES/StringList.h>

///////////////////////////

START_TEST(DTAFile, "$Id: CsvFile_test.C 10915 2013-04-04 20:14:57Z aiche $")

/////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////

using namespace OpenMS;

CsvFile* ptr = 0;
CsvFile* nullPointer = 0;
START_SECTION(CsvFile())
	ptr = new CsvFile;
	TEST_NOT_EQUAL(ptr, nullPointer)
END_SECTION

START_SECTION(~CsvFile())
	delete ptr;
END_SECTION

#if 0

// Something is terribly wrong here ... looks like an unintentional commit?

START_SECTION(CsvFile(const String& filename, char is = ',',bool ie = false, Int first_n = -1))
//tested in getRow
TEST_EXCEPTION(Exception::FileNotFound, CsvFile("CsvFile_1.csv"))
END_SECTION

START_SECTION(void fload(const String& filename, char is = ',', bool ie = false, Int first_n = -1))
//tested in getRow
TEST_EXCEPTION(Exception::FileNotFound, f1.fload("CsvFile_1.csv"))	


END_SECTION

#endif

START_SECTION(bool getRow(Size row,StringList &list))
	TOLERANCE_ABSOLUTE(0.01)
	CsvFile f1,f3,f4;
	
	
	CsvFile f2(OPENMS_GET_TEST_DATA_PATH("CsvFile_1.csv"), '\t');
	StringList list;
	f2.getRow(0,list);
	TEST_EQUAL(list,StringList::create("hello,world"))
	f2.getRow(1,list);
	TEST_EQUAL(list,StringList::create("the,dude"))
	f2.getRow(2,list);
	TEST_EQUAL(list,StringList::create("spectral,search"))
	
	f3.fload(OPENMS_GET_TEST_DATA_PATH("CsvFile_1.csv"),'\t');
	f3.getRow(0,list);
	TEST_EQUAL(list,StringList::create("hello,world"))
	f3.getRow(1,list);
	TEST_EQUAL(list,StringList::create("the,dude"))
	f3.getRow(2,list);
	TEST_EQUAL(list,StringList::create("spectral,search"))
	
	f4.fload(OPENMS_GET_TEST_DATA_PATH("CsvFile_2.csv"),'\t',true);
	f4.getRow(0,list);
	TEST_EQUAL(list,StringList::create("hello,world"))
	f4.getRow(1,list);
	TEST_EQUAL(list,StringList::create("the,dude"))
	f4.getRow(2,list);
	TEST_EQUAL(list,StringList::create("spectral,search"))	
	
END_SECTION

/////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////
END_TEST