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// --------------------------------------------------------------------------
// OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2013.
//
// This software is released under a three-clause BSD license:
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of any author or any participating institution
// may be used to endorse or promote products derived from this software
// without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
// --------------------------------------------------------------------------
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// --------------------------------------------------------------------------
// $Maintainer: Stephan Aiche $
// $Authors: Stephan Aiche $
// --------------------------------------------------------------------------
#include <OpenMS/CONCEPT/ClassTest.h>
///////////////////////////
#include <OpenMS/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSAlphabetParser.h>
///////////////////////////
using namespace OpenMS;
using namespace ims;
using namespace std;
class IMSAlphabetParserImpl
: public IMSAlphabetParser<>
{
private:
ContainerType elements_;
public:
virtual ContainerType& getElements()
{
return elements_;
}
virtual void parse(std::istream& )
{
// ignore istream, just enter something into the map
elements_.insert(std::make_pair("A", 71.03711));
elements_.insert(std::make_pair("R", 156.10111));
}
};
START_TEST(IMSAlphabetParser, "$Id: IMSAlphabetParser_test.C 10915 2013-04-04 20:14:57Z aiche $")
/////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////
// this is an abstract class, that only provides the load method
// it cannot be instanciated so it cannot be tested, therefor we
// test the implementation from above
IMSAlphabetParser<>* ptr = 0;
IMSAlphabetParser<>* null_ptr = 0;
START_SECTION(IMSAlphabetParser())
{
ptr = new IMSAlphabetParserImpl();
TEST_NOT_EQUAL(ptr, null_ptr)
}
END_SECTION
START_SECTION(~IMSAlphabetParser())
{
delete ptr;
}
END_SECTION
IMSAlphabetParser<> * parser = new IMSAlphabetParserImpl();
START_SECTION((void load(const std::string &fname)))
{
TEST_EXCEPTION(Exception::IOException ,parser->load(""))
String filename;
NEW_TMP_FILE(filename)
// just create the file
ofstream of;
of.open(filename.c_str());
of << "just text" << std::endl;
of.close();
parser->load(filename);
TEST_EQUAL(parser->getElements().empty(), false)
}
END_SECTION
START_SECTION((virtual ContainerType& getElements()))
{
TEST_EQUAL(parser->getElements().size(), 2)
TEST_REAL_SIMILAR(parser->getElements()["A"], 71.03711)
TEST_REAL_SIMILAR(parser->getElements()["R"], 156.10111)
}
END_SECTION
START_SECTION((virtual void parse(InputSource &is)))
{
// already tested by load
NOT_TESTABLE
}
END_SECTION
delete parser;
/////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////
END_TEST
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