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// --------------------------------------------------------------------------
// OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2013.
//
// This software is released under a three-clause BSD license:
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of any author or any participating institution
// may be used to endorse or promote products derived from this software
// without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
// --------------------------------------------------------------------------
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// --------------------------------------------------------------------------
// $Maintainer: Stephan Aiche$
// $Authors: Stephan Aiche$
// --------------------------------------------------------------------------
#include <OpenMS/CONCEPT/ClassTest.h>
///////////////////////////
#include <OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantifier.h>
///////////////////////////
#include <OpenMS/ANALYSIS/QUANTITATION/ItraqFourPlexQuantitationMethod.h>
#include <OpenMS/FORMAT/ConsensusXMLFile.h>
using namespace OpenMS;
using namespace std;
START_TEST(IsobaricQuantifier, "$Id: IsobaricQuantifier_test.C 11264 2013-05-19 11:45:28Z aiche $")
/////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////
IsobaricQuantifier* ptr = 0;
IsobaricQuantifier* null_ptr = 0;
ItraqFourPlexQuantitationMethod quant_meth;
START_SECTION((IsobaricQuantifier(const IsobaricQuantitationMethod *const quant_method)))
{
ptr = new IsobaricQuantifier(&quant_meth);
TEST_NOT_EQUAL(ptr, null_ptr)
}
END_SECTION
START_SECTION(~IsobaricQuantifier())
{
delete ptr;
}
END_SECTION
START_SECTION((IsobaricQuantifier(const IsobaricQuantifier &other)))
{
IsobaricQuantifier quantifier(&quant_meth);
IsobaricQuantifier * quantifier2 = new IsobaricQuantifier(quantifier);
TEST_NOT_EQUAL(quantifier2, null_ptr)
delete quantifier2;
// equality cannot be checked
NOT_TESTABLE
}
END_SECTION
START_SECTION((IsobaricQuantifier& operator=(const IsobaricQuantifier &rhs)))
{
IsobaricQuantifier quantifier(&quant_meth);
IsobaricQuantifier quantifier2(&quant_meth);
quantifier2 = quantifier;
// equality cannot be checked
NOT_TESTABLE
}
END_SECTION
START_SECTION((void quantify(const ConsensusMap &consensus_map_in, ConsensusMap &consensus_map_out)))
{
ConsensusXMLFile cm_file;
ConsensusMap cm_in, cm_out;
cm_file.load(OPENMS_GET_TEST_DATA_PATH("IsobaricQuantifier.consensusXML"),cm_in);
IsobaricQuantifier iq(&quant_meth);
Param p;
p.setValue("normalization", "true");
p.setValue("isotope_correction", "true");
iq.setParameters(p);
iq.quantify(cm_in,cm_out);
String cm_file_out;
NEW_TMP_FILE(cm_file_out);
cm_file.store(cm_file_out,cm_out);
WHITELIST("<?xml-stylesheet");
// WHITELIST("<?xml-stylesheet,consensusElement id=");
TEST_FILE_SIMILAR(cm_file_out,OPENMS_GET_TEST_DATA_PATH("IsobaricQuantifier_out.consensusXML"));
}
END_SECTION
/////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////
END_TEST
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